Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AARS2	57505	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44272531	44272531	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AARS2	NM_020745	exon12	c.G1603C	p.V535L	.	.	229	33	72	1	.	91
ABCA1	19	bcgsc.ca	37	9	107574930	107574930	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ABCA1	NM_005502	exon28	c.A3975G	p.T1325T	.	.	130	5	46	0	.	1016
ABCA1	19	bcgsc.ca	37	9	107624029	107624029	+	Silent	SNP	C	C	T	rs2230805	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ABCA1	NM_005502	exon6	c.G474A	p.L158L	.	.	197	10	53	0	C|0.656;T|0.344	1016
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48559835	48559835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ABCA13	NM_152701	exon53	c.A13996G	p.T4666A	.	.	275	92	98	0	.	521
ABR	29	bcgsc.ca	37	17	916349	916349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ABR	NM_021962	exon17	c.A1847G	p.N616S	.	.	170	8	84	1	.	91
ACR	49	ucsc.edu	37	22	51178200	51178200	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ACR	NM_001097	exon3	c.G360A	p.L120L	.	.	41	4	41	0	.	90
ADAM21	8747	ucsc.edu	37	14	70924852	70924852	+	Silent	SNP	A	A	C	rs78990308		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ADAM21	NM_003813	exon2	c.A636C	p.L212L	.	.	348	110	106	21	C|1.000;|0.000	92
ADAM21	8747	ucsc.edu	37	14	70925818	70925818	+	Silent	SNP	T	T	C	rs59688260	bycluster;byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ADAM21	NM_003813	exon2	c.T1602C	p.N534N	.	.	132	48	59	0	T|0.233;C|0.767	92
ADAM21P1	145241	ucsc.edu	37	14	70714162	70714162	+	RNA	SNP	A	A	G	rs4899340	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	138	46	50	10	A|0.192;G|0.808	.
ADAM21P1	145241	ucsc.edu	37	14	70714172	70714172	+	RNA	SNP	T	T	C	rs4899341	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	142	47	48	7	T|0.183;C|0.817	.
ADH1C	126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100266044	100266044	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	159	113	99	0	.	.
ADNP2	22850	bcgsc.ca	37	18	77894844	77894844	+	Silent	SNP	G	G	A	rs3744877	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ADNP2	NM_014913	exon4	c.G1548A	p.P516P	.	.	304	9	97	0	G|0.596;A|0.404	140
ADRBK1	156	ucsc.edu	37	11	67050255	67050255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ADRBK1	NM_001619	exon14	c.A1193G	p.D398G	.	.	56	6	20	0	.	521
AGTR2	186	hgsc.bcm.edu	37	X	115303928	115303928	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AGTR2	NM_000686	exon3	c.395delT	p.I132fs	.	.	576	11	168	2	.	565
AGXT	189	bcgsc.ca	37	2	241817049	241817049	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AGXT	NM_000030	exon9	c.G942T	p.P314P	.	.	138	5	77	0	.	90
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu	37	1	247007131	247007131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AHCTF1	NM_015446	exon34	c.6518delA	p.N2173fs	.	.	2036	14	195	0	.	97
AHNAK2	113146	bcgsc.ca	37	14	105411866	105411866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AHNAK2	NM_138420	exon7	c.T9922C	p.F3308L	.	.	243	7	88	0	.	47
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105418058	105418058	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AHNAK2	NM_138420	exon7	c.G3730C	p.G1244R	.	.	63	54	41	1	.	47
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15512065	15512065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AKAP8L	NM_014371	exon5	c.G712A	p.G238S	.	.	22	17	19	0	.	1
AKD1	221264	bcgsc.ca	37	6	109894722	109894722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AKD1	NM_001145128	exon21	c.C2267T	p.A756V	.	.	168	6	63	0	.	91
AKR1C4	1109	bcgsc.ca	37	10	5247784	5247784	+	Missense_Mutation	SNP	C	C	G	rs3829125	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AKR1C4	NM_001818	exon4	c.C434G	p.S145C	.	.	423	11	135	0	C|0.697;G|0.303	91
ALPK1	80216	bcgsc.ca	37	4	113352899	113352899	+	Missense_Mutation	SNP	G	G	A	rs2074379	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ALPK1	NM_001102406	exon11	c.G2196A	p.M732I	.	.	138	5	60	0	G|0.353;A|0.647	337
ALPPL2	251	ucsc.edu;bcgsc.ca	37	2	233273018	233273018	+	Silent	SNP	G	G	A	rs75080031	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ALPPL2	NM_031313	exon6	c.G690A	p.G230G	.	.	92	48	83	2	G|0.984;A|0.016	91
AMD1	262	bcgsc.ca	37	6	111214737	111214737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AMD1	NM_001634	exon9	c.T923C	p.L308P	.	.	211	6	90	0	.	91
ANAPC1	64682	ucsc.edu	37	2	112605302	112605302	+	Silent	SNP	C	C	T	rs77448997	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANAPC1	NM_022662	exon15	c.G1791A	p.L597L	.	.	278	76	83	28	C|0.500;T|0.500	228
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114278315	114278315	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANK2	NM_001148	exon38	c.A8541T	p.S2847S	.	.	212	76	67	0	.	583
ANKRD20A1	84210	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	67968357	67968357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANKRD20A1	NM_032250	exon15	c.A1916T	p.D639V	.	.	1051	289	165	0	.	68
ANKRD20A5P	440482	broad.mit.edu	37	18	14179258	14179258	+	RNA	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANKRD20A5P	.	.	.	.	.	.	53	4	20	0	.	90
ANKRD20A5P	440482	ucsc.edu	37	18	14183734	14183734	+	RNA	SNP	A	A	G	rs62085005	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANKRD20A5P	.	.	.	.	.	.	170	43	56	10	A|0.938;G|0.062	90
ANKRD30B	374860	ucsc.edu	37	18	14851756	14851756	+	Silent	SNP	G	G	A	rs9676225	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANKRD30B	NM_001145029	exon36	c.G3456A	p.T1152T	.	.	356	101	109	23	G|0.500;A|0.500	24
ANKS1B	56899	broad.mit.edu;bcgsc.ca	37	12	99223051	99223051	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_152788	exon19	c.C2967T	p.D989D	.	.	362	10	115	0	.	.
ANO10	55129	hgsc.bcm.edu	37	3	43647212	43647213	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANO10	NM_001204833	exon2	c.133_134insA	p.D45fs	.	.	725	0	159	0	.	92
ANO5	203859	bcgsc.ca	37	11	22242700	22242700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANO5	NM_213599	exon5	c.A238G	p.I80V	.	.	87	5	43	0	.	515
ANO5	203859	bcgsc.ca	37	11	22272545	22272545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANO5	NM_213599	exon12	c.A1168G	p.M390V	.	.	124	5	66	0	.	515
AP2A2	161	ucsc.edu	37	11	993829	993829	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AP2A2	NM_001242837	exon13	c.C1629T	p.S543S	.	.	47	4	24	0	.	90
AP3D1	8943	bcgsc.ca	37	19	2111322	2111322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AP3D1	NM_001261826	exon26	c.A2947G	p.S983G	.	.	75	5	34	0	.	90
APBA1	320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	72064664	72064664	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	APBA1	NM_001163	exon10	c.G2017T	p.E673X	.	.	98	38	48	0	.	91
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57283493	57283493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	APPL1	NM_012096	exon11	c.G969T	p.M323I	.	.	162	66	77	0	.	153
AQP7	364	hgsc.bcm.edu	37	9	33386144	33386144	+	Silent	SNP	G	G	A	rs76209395	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AQP7	NM_001170	exon6	c.C456T	p.V152V	.	.	267	28	74	0	G|0.375;A|0.625	90
ARAP3	64411	bcgsc.ca	37	5	141046044	141046044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARAP3	NM_022481	exon17	c.C2519T	p.P840L	.	.	179	6	47	0	.	291
ARHGAP12	94134	bcgsc.ca	37	10	32106735	32106735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGAP12	NM_018287	exon13	c.G1712A	p.S571N	.	.	73	4	36	0	.	227
ARHGEF2	9181	broad.mit.edu;mdanderson.org	37	1	155931469	155931469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF2	NM_001162383	exon11	c.C1451A	p.A484E	.	.	37	6	11	0	.	228
ARHGEF40	55701	mdanderson.org	37	14	21556134	21556134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF40	NM_018071	exon22	c.A4395C	p.E1465D	.	.	37	10	21	0	.	228
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135767930	135767930	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF6	NM_004840	exon12	c.C1298G	p.S433C	.	.	320	118	103	0	.	227
ARHGEF9	23229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	62926264	62926264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF9	NM_015185	exon3	c.C255A	p.D85E	.	.	102	45	49	0	.	233
ARL5C	390790	broad.mit.edu;bcgsc.ca	37	17	37319029	37319029	+	Missense_Mutation	SNP	T	T	G	rs544198	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARL5C	NM_001143968	exon3	c.A190C	p.M64L	.	.	171	8	59	0	T|0.752;G|0.248	68
ARMC3	219681	bcgsc.ca	37	10	23295839	23295839	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARMC3	NM_173081	exon14	c.T1758C	p.P586P	.	.	50	4	34	0	.	90
ARMC8	25852	bcgsc.ca	37	3	138007955	138007955	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARMC8	NM_015396	exon21	c.A1845G	p.E615E	.	.	342	9	122	0	.	90
ASAP2	8853	hgsc.bcm.edu	37	2	9528600	9528601	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ASAP2	NM_003887	exon22	c.2308_2309insG	p.S770fs	.	.	128	11	43	0	.	90
ASH2L	9070	bcgsc.ca	37	8	37974197	37974197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ASH2L	NM_004674	exon8	c.C807A	p.D269E	.	.	94	4	50	0	.	131
ASIC3	9311	broad.mit.edu	37	7	150746080	150746080	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_020322	exon1	c.C108A	p.G36G	.	.	46	4	13	1	.	.
ASPM	259266	bcgsc.ca	37	1	197071573	197071573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ASPM	NM_018136	exon18	c.C6808A	p.Q2270K	.	.	268	7	83	0	.	615
ATF2	1386	bcgsc.ca	37	2	175982841	175982841	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATF2	NM_001880	exon7	c.T324C	p.P108P	.	.	85	4	36	0	.	586
ATG4A	115201	bcgsc.ca	37	X	107381423	107381423	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATG4A	NM_052936	exon9	c.814+2T>A	.	.	.	146	5	62	0	.	131
ATG5	9474	bcgsc.ca	37	6	106634424	106634424	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATG5	NM_004849	exon8	c.A819G	p.P273P	.	.	78	4	47	0	.	153
ATP13A5	344905	bcgsc.ca	37	3	193032779	193032779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATP13A5	NM_198505	exon18	c.A2140G	p.R714G	.	.	146	6	47	0	.	144
ATP6V0A2	23545	bcgsc.ca	37	12	124209332	124209332	+	Silent	SNP	T	T	C	rs1139789	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATP6V0A2	NM_012463	exon4	c.T426C	p.N142N	.	.	84	7	35	0	T|0.250;G|0.228	92
ATP6V1C2	245973	bcgsc.ca	37	2	10922381	10922381	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATP6V1C2	NM_001039362	exon13	c.A1074G	p.P358P	.	.	112	5	52	0	.	91
ATR	545	bcgsc.ca	37	3	142168331	142168331	+	Silent	SNP	C	C	T	rs1802904	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATR	NM_001184	exon47	c.G7875A	p.Q2625Q	.	.	329	10	108	0	C|0.100;T|0.900	1139
ATXN3	4287	bcgsc.ca	37	14	92537388	92537388	+	Missense_Mutation	SNP	T	T	C	rs12896589		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATXN3	NM_001164778	exon6	c.A397G	p.K133E	.	.	40	6	21	0	T|0.929;C|0.071	522
ATXN3L	92552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13337139	13337139	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATXN3L	NM_001135995	exon1	c.C915A	p.G305G	.	.	457	213	141	0	.	542
AXDND1	126859	bcgsc.ca	37	1	179414265	179414265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AXDND1	NM_144696	exon16	c.A1724G	p.Q575R	.	.	155	5	42	0	.	93
AZIN1	51582	ucsc.edu	37	8	103841636	103841636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AZIN1	NM_015878	exon12	c.A1099G	p.S367G	.	.	286	3	82	0	.	90
BBS12	166379	bcgsc.ca	37	4	123664204	123664204	+	Missense_Mutation	SNP	G	G	A	rs309370	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BBS12	NM_001178007	exon3	c.G1157A	p.R386Q	.	.	139	5	56	0	G|0.542;A|0.458	92
BBS9	27241	bcgsc.ca	37	7	33303900	33303900	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BBS9	NM_198428	exon7	c.618-2A>G	.	.	.	159	5	52	0	.	230
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	24989464	24989464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BCAT1	NM_001178093	exon8	c.T920C	p.L307P	.	.	171	67	80	0	.	522
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	136589325	136589325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BCLAF1	NM_014739	exon10	c.G2372T	p.G791V	.	.	333	37	106	0	.	228
BDP1	55814	bcgsc.ca	37	5	70849021	70849021	+	Silent	SNP	G	G	T	rs469039	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BDP1	NM_018429	exon35	c.G7074T	p.P2358P	.	.	119	5	56	0	G|0.560;T|0.440	92
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107391941	107391941	+	Missense_Mutation	SNP	C	C	T	rs142662918	byfrequency;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BEND3	NM_001080450	exon5	c.G454A	p.V152M	.	.	144	59	54	0	C|1.000;G|0.000	71
BIRC3	330	bcgsc.ca	37	11	102196086	102196086	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BIRC3	NM_001165	exon2	c.T846C	p.Y282Y	.	.	72	4	60	0	.	662
BPIFA1	51297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	31825880	31825880	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_016583	exon3	c.G180T	p.L60L	.	.	95	38	37	0	.	.
BPNT1	10380	ucsc.edu	37	1	220231254	220231254	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BPNT1	.	.	.	.	.	.	177	3	69	0	.	91
BPTF	2186	hgsc.bcm.edu	37	17	65899950	65899951	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BPTF	NM_004459	exon10	c.2967_2968insA	p.V989fs	.	.	1327	0	167	0	.	94
BRAF	673	bcgsc.ca	37	7	140476877	140476877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BRAF	NM_004333	exon13	c.A1529G	p.H510R	.	.	151	5	47	0	.	92146
BRWD1	54014	bcgsc.ca	37	21	40642264	40642264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BRWD1	NM_018963	exon14	c.A1340G	p.D447G	.	.	309	7	110	1	.	94
BSN	8927	bcgsc.ca	37	3	49694517	49694517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BSN	NM_003458	exon5	c.T7528C	p.F2510L	.	.	140	8	51	0	.	97
BTAF1	9044	bcgsc.ca	37	10	93757402	93757402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BTAF1	NM_003972	exon25	c.T3554C	p.V1185A	.	.	143	6	71	0	.	92
BTK	695	bcgsc.ca	37	X	100617221	100617221	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BTK	NM_000061	exon7	c.A528G	p.K176K	.	.	140	5	73	1	.	1395
C10orf118	55088	bcgsc.ca	37	10	115891942	115891942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C10orf118	NM_018017	exon11	c.G1657T	p.G553C	.	.	74	4	46	0	.	92
C10orf68	79741	bcgsc.ca	37	10	33123774	33123774	+	Silent	SNP	T	T	C	rs11009107	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C10orf68	NM_024688	exon14	c.T1113C	p.N371N	.	.	296	8	125	0	T|0.707;C|0.293	47
C10orf76	79591	bcgsc.ca	37	10	103766372	103766372	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C10orf76	NM_024541	exon14	c.T973C	p.L325L	.	.	75	4	41	0	.	90
C12orf5	57103	bcgsc.ca	37	12	4461466	4461466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C12orf5	NM_020375	exon6	c.A422G	p.Q141R	.	.	66	4	40	0	.	226
C14orf182	283551	bcgsc.ca	37	14	50472405	50472405	+	Missense_Mutation	SNP	G	G	A	rs6572635	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C14orf182	NM_001012706	exon1	c.C113T	p.P38L	.	.	417	10	119	0	G|0.739;A|0.261	90
C19orf18	147685	bcgsc.ca	37	19	58470048	58470048	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C19orf18	NM_152474	exon6	c.A570G	p.K190K	.	.	257	7	102	0	.	91
C4orf21	55345	bcgsc.ca	37	4	113462367	113462367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C4orf21	NM_018392	exon25	c.A5656G	p.I1886V	.	.	227	7	92	0	.	90
C4orf26	152816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76489342	76489342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C4orf26	NM_001206981	exon3	c.C130T	p.R44C	.	.	71	36	46	0	.	90
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu	37	6	121638709	121638709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C6orf170	NM_152730	exon3	c.427delA	p.I143fs	.	.	1533	14	196	0	.	92
C7orf63	79846	bcgsc.ca	37	7	89933405	89933405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C7orf63	NM_001039706	exon18	c.A2173G	p.I725V	.	.	157	5	58	0	.	91
CA3	761	ucsc.edu	37	8	86351954	86351954	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CA3	NM_005181	exon2	c.G48A	p.W16X	.	.	26	4	13	0	.	514
CABLES2	81928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60968622	60968622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CABLES2	NM_031215	exon6	c.C754A	p.L252M	.	.	120	57	52	0	.	91
CAPN12	147968	ucsc.edu	37	19	39221830	39221830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CAPN12	NM_144691	exon19	c.T1991C	p.L664P	.	.	70	17	21	1	.	91
CARD6	84674	hgsc.bcm.edu	37	5	40853094	40853094	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CARD6	NM_032587	exon3	c.1660delT	p.F554fs	.	.	1059	13	172	4	.	230
CASC5	57082	bcgsc.ca	37	15	40913067	40913067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CASC5	NM_170589	exon11	c.C683A	p.S228Y	.	.	57	4	32	0	.	660
CASK	8573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41428985	41428985	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CASK	NM_001126054	exon16	c.A1518G	p.K506K	.	.	411	162	137	0	.	616
CCDC108	255101	bcgsc.ca	37	2	219886547	219886547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CCDC108	NM_194302	exon18	c.T3085C	p.Y1029H	.	.	93	5	62	0	.	94
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31691634	31691634	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001257968	exon13	c.G2871T	p.R957R	.	.	444	210	113	0	.	.
CCDC136	64753	bcgsc.ca	37	7	128452166	128452166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CCDC136	NM_022742	exon13	c.A2341G	p.T781A	.	.	113	5	55	0	.	24
CCDC144NL	339184	bcgsc.ca	37	17	20768744	20768744	+	Missense_Mutation	SNP	G	G	T	rs62066974	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CCDC144NL	NM_001004306	exon4	c.C650A	p.S217Y	.	.	94	11	50	0	G|0.200;T|0.800	90
CCDC38	120935	hgsc.bcm.edu	37	12	96292432	96292432	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CCDC38	NM_182496	exon6	c.447delA	p.K149fs	.	.	999	8	185	1	.	91
CCR3	1232	bcgsc.ca	37	3	46307575	46307575	+	Missense_Mutation	SNP	G	G	A	rs200478041		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CCR3	NM_178328	exon3	c.G989A	p.R330Q	.	.	98	5	45	0	.	660
CCSER1	401145	bcgsc.ca	37	4	91230480	91230480	+	Missense_Mutation	SNP	T	T	A	rs72659490	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001145065	exon2	c.T1045A	p.L349I	.	.	99	6	76	0	T|0.990;A|0.010	.
CD79A	973	bcgsc.ca	37	19	42384932	42384932	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CD79A	NM_021601	exon5	c.454-2A>G	.	.	.	50	4	27	0	.	93
CDH15	1013	ucsc.edu	37	16	89261498	89261498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH15	NM_004933	exon14	c.C2380A	p.H794N	.	.	44	4	12	0	.	523
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	19612615	19612615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH18	NM_001167667	exon6	c.G739T	p.G247W	.	.	375	192	91	0	.	159
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26906920	26906920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH9	NM_016279	exon4	c.C551T	p.T184I	.	.	228	121	67	0	.	99
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176003023	176003023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDHR2	NM_017675	exon12	c.T1031C	p.M344T	.	.	110	34	42	0	.	70
CDHR3	222256	bcgsc.ca	37	7	105672921	105672921	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDHR3	NM_152750	exon19	c.A2436G	p.K812K	.	.	139	5	54	0	.	23
CDKL5	6792	bcgsc.ca	37	X	18638064	18638064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDKL5	NM_003159	exon16	c.A2354G	p.K785R	.	.	221	6	95	0	.	838
CDRT15P1	94158	ucsc.edu;bcgsc.ca	37	17	13927856	13927856	+	RNA	SNP	T	T	C	rs201680053		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	43	31	69	14	.	.
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104060948	104060948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CENPE	NM_001813	exon38	c.A6202G	p.R2068G	.	.	227	153	114	0	.	277
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu	37	14	105351860	105351860	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001112726	exon10	c.1925delC	p.A642fs	.	.	32	16	8	0	.	.
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88486497	88486497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CEP290	NM_025114	exon29	c.T3422C	p.L1141S	.	.	366	150	119	0	.	96
CES1	1066	bcgsc.ca	37	16	55866932	55866932	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CES1	NM_001025195	exon1	c.T36C	p.S12S	.	.	322	9	96	0	.	68
CFTR	1080	broad.mit.edu	37	7	117188806	117188806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CFTR	NM_000492	exon10	c.C1321A	p.L441M	.	.	1311	41	195	0	.	518
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	146714372	146714372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CHD1L	NM_004284	exon1	c.A19G	p.T7A	.	.	37	14	9	0	.	231
CHMP7	91782	bcgsc.ca	37	8	23104294	23104294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CHMP7	NM_152272	exon2	c.A86G	p.E29G	.	.	78	5	42	2	.	90
CHRM5	1133	bcgsc.ca	37	15	34355086	34355086	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CHRM5	NM_012125	exon3	c.A168G	p.K56K	.	.	152	6	73	0	.	91
CHUK	1147	bcgsc.ca	37	10	101964390	101964390	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CHUK	NM_001278	exon13	c.T1380C	p.A460A	.	.	219	6	79	0	.	961
CHUK	1147	bcgsc.ca	37	10	101979069	101979069	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CHUK	NM_001278	exon6	c.A522G	p.Q174Q	.	.	205	6	81	0	.	961
CLASP2	23122	broad.mit.edu	37	3	33759318	33759318	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CLASP2	NM_015097	exon1	c.G177A	p.V59V	.	.	51	4	17	0	.	93
CLCN7	1186	bcgsc.ca	37	16	1504437	1504437	+	Silent	SNP	C	C	T	rs12935737	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CLCN7	NM_001287	exon13	c.G1128A	p.P376P	.	.	102	6	38	0	C|0.926;T|0.074	92
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190030689	190030689	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CLDN1	NM_021101	exon2	c.C360A	p.V120V	.	.	155	53	67	0	.	91
CLSTN3	9746	ucsc.edu	37	12	7303147	7303147	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CLSTN3	NM_014718	exon15	c.G2253A	p.E751E	.	.	33	4	17	0	.	153
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79027939	79027953	+	In_Frame_Del	DEL	ATATTTAGAGCCTGA	ATATTTAGAGCCTGA	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	ATATTTAGAGCCTGA	ATATTTAGAGCCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CMYA5	NM_153610	exon2	c.3351_3365del	p.1117_1122del	.	.	191	28	90	0	.	77
CNOT1	23019	bcgsc.ca	37	16	58564170	58564170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CNOT1	NM_016284	exon43	c.C6259T	p.P2087S	.	.	78	4	33	0	.	95
COBL	23242	bcgsc.ca	37	7	51096974	51096974	+	Missense_Mutation	SNP	C	C	T	rs2240090	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	COBL	NM_015198	exon10	c.G1819A	p.V607I	.	.	266	8	89	0	C|0.360;T|0.640	95
COL4A4	1286	bcgsc.ca	37	2	227954599	227954599	+	Missense_Mutation	SNP	G	G	A	rs2229814	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	COL4A4	NM_000092	exon21	c.C1444T	p.P482S	.	.	314	7	149	0	G|0.219;T|0.291	142
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107807134	107807134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	COL4A5	NM_000495	exon4	c.C254A	p.P85Q	.	.	498	220	148	0	.	133
COMMD3-BMI1	0	bcgsc.ca	37	10	22616685	22616685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001204062	exon9	c.A709G	p.R237G	.	.	191	7	74	0	.	.
COPG1	22820	bcgsc.ca	37	3	128990734	128990734	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_016128	exon19	c.C1968T	p.T656T	.	.	70	4	33	0	.	.
COPG1	22820	bcgsc.ca	37	3	128993735	128993735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_016128	exon22	c.A2311G	p.N771D	.	.	196	6	86	0	.	.
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47746441	47746441	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CORIN	NM_006587	exon5	c.T777G	p.P259P	.	.	127	41	61	0	.	91
CPNE6	9362	bcgsc.ca	37	14	24545055	24545055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CPNE6	NM_006032	exon10	c.T884C	p.F295S	.	.	191	7	49	0	.	93
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43273593	43273593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CRIP3	NM_206922	exon8	c.G574C	p.G192R	.	.	178	56	74	0	.	91
CROCCP2	84809	broad.mit.edu	37	1	16956555	16956555	+	RNA	SNP	C	C	T	rs9329440	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	104	6	39	1	C|0.625;T|0.375	.
CROCCP3	114819	broad.mit.edu	37	1	16812970	16812970	+	RNA	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	85	9	32	2	.	.
CRYM-AS1	400508	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21328280	21328280	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	182	59	76	0	.	.
CSK	1445	ucsc.edu	37	15	75091696	75091696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSK	NM_001127190	exon6	c.G326A	p.S109N	.	.	41	4	20	1	.	510
CSMD1	64478	bcgsc.ca	37	8	2910017	2910017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSMD1	NM_033225	exon50	c.T7627C	p.W2543R	.	.	201	6	55	0	.	86
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2976080	2976080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSMD1	NM_033225	exon42	c.C6271A	p.P2091T	.	.	140	55	57	0	.	86
CSMD3	114788	bcgsc.ca	37	8	113529340	113529340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSMD3	NM_198123	exon28	c.T4679C	p.L1560P	.	.	163	5	81	0	.	1132
CSN1S1	1446	bcgsc.ca	37	4	70807771	70807771	+	Missense_Mutation	SNP	C	C	T	rs10030475	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001890	exon13	c.C350T	p.A117V	.	.	666	13	183	0	C|0.659;T|0.341	.
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37678916	37678916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSNK1A1L	NM_145203	exon1	c.T478A	p.L160M	.	.	743	336	152	0	.	396
CTAGE7P	119437	bcgsc.ca	37	10	131906856	131906856	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	2	2	15	0	.	.
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	67829142	67829142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTNNA3	NM_001127384	exon15	c.G2083T	p.D695Y	.	.	354	140	121	0	.	234
CTRL	1506	bcgsc.ca	37	16	67965072	67965072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTRL	NM_001907	exon2	c.A85G	p.S29G	.	.	65	4	31	0	.	90
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117375351	117375351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTTNBP2	NM_033427	exon15	c.C3660A	p.S1220R	.	.	151	67	72	0	.	94
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43153266	43153266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CUL9	NM_015089	exon3	c.G668A	p.R223H	.	.	121	52	37	0	.	529
CUX1	1523	ucsc.edu	37	7	101713653	101713653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CUX1	NM_181500	exon4	c.A257G	p.E86G	.	.	37	4	20	0	.	160
CYFIP1	23191	bcgsc.ca	37	15	22933835	22933835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CYFIP1	NM_014608	exon8	c.A754G	p.R252G	.	.	142	5	56	0	.	99
CYLD	1540	bcgsc.ca	37	16	50784112	50784112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CYLD	NM_001042355	exon3	c.T503C	p.L168P	.	.	45	4	29	0	.	2444
CYP1B1	1545	bcgsc.ca	37	2	38298139	38298139	+	Missense_Mutation	SNP	T	T	C	rs1800440	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	CYP1B1,NS,carcinoma,+1	CYP1B1	NM_000104	exon3	c.A1358G	p.N453S	.	.	197	8	65	0	T|0.882;C|0.118	515
CYP2B6	1555	ucsc.edu	37	19	41515263	41515263	+	Missense_Mutation	SNP	A	A	G	rs28399497	bycluster;byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CYP2B6	NM_000767	exon5	c.A785G	p.K262R	.	.	245	71	90	17	A|0.731;G|0.269	92
CYP4F12	66002	bcgsc.ca	37	19	15789201	15789201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CYP4F12	NM_023944	exon3	c.T329C	p.I110T	.	.	69	4	60	0	.	95
DAPP1	27071	bcgsc.ca	37	4	100787233	100787233	+	Silent	SNP	C	C	A	rs77036069	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DAPP1	NM_014395	exon8	c.C729A	p.T243T	.	.	135	8	81	0	C|0.971;A|0.029	93
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176887553	176887553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DBN1	NM_080881	exon11	c.G841A	p.A281T	.	.	144	69	53	0	.	587
DBR1	51163	hgsc.bcm.edu	37	3	137880741	137880743	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DBR1	NM_016216	exon8	c.1623_1625del	p.541_542del	.	.	487	12	120	3	.	90
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27998516	27998516	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DCAF8L1	NM_001017930	exon1	c.C936T	p.F312F	.	.	183	59	64	0	.	112
DCLK2	166614	bcgsc.ca	37	4	151161004	151161004	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DCLK2	NM_001040261	exon12	c.T1728C	p.A576A	.	.	135	5	51	0	.	300
DDIT4L	115265	bcgsc.ca	37	4	101111120	101111120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DDIT4L	NM_145244	exon2	c.G21T	p.L7F	.	.	71	4	48	0	.	91
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162731029	162731029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DDR2	NM_001014796	exon10	c.G884T	p.G295V	.	.	307	71	83	0	.	1464
DDX11	1663	bcgsc.ca	37	12	31242861	31242861	+	Silent	SNP	A	A	C	rs200751040	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DDX11	NM_030653	exon9	c.A922C	p.R308R	.	.	1083	121	164	15	A|0.977;C|0.023	229
DDX11	1663	bcgsc.ca	37	12	31249861	31249861	+	Missense_Mutation	SNP	C	C	G	rs2075322	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DDX11	NM_030653	exon17	c.C1699G	p.Q567E	.	.	189	8	63	0	C|0.436;G|0.564	229
DEFA6	1671	bcgsc.ca	37	8	6783428	6783428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DEFA6	NM_001926	exon1	c.G130A	p.A44T	.	.	101	5	47	0	.	90
DENND4A	10260	bcgsc.ca	37	15	65959992	65959992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DENND4A	NM_001144823	exon29	c.T5033C	p.V1678A	.	.	178	7	73	0	.	229
DGKB	1607	bcgsc.ca	37	7	14216455	14216455	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DGKB	NM_145695	exon24	c.A2316G	p.T772T	.	.	210	7	66	0	.	276
DIP2C	22982	bcgsc.ca	37	10	465120	465120	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DIP2C	NM_014974	exon6	c.T624C	p.P208P	.	.	84	4	41	0	.	156
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31200854	31200854	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DMD	NM_004016	exon8	c.770+1G>T	.	.	.	151	57	75	0	.	265
DNAH10	196385	bcgsc.ca	37	12	124317874	124317874	+	Silent	SNP	C	C	T	rs78764267	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DNAH10	NM_207437	exon26	c.C4405T	p.L1469L	.	.	240	7	94	0	C|0.956;T|0.044	95
DNAH5	1767	bcgsc.ca	37	5	13928238	13928238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DNAH5	NM_001369	exon3	c.T242C	p.M81T	.	.	145	5	62	0	.	182
DOCK10	55619	bcgsc.ca	37	2	225710033	225710033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DOCK10	NM_014689	exon21	c.G2368A	p.A790T	.	.	55	4	42	0	.	92
DOCK4	9732	bcgsc.ca	37	7	111541858	111541858	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DOCK4	NM_014705	exon15	c.1193-1G>T	.	.	.	74	4	30	0	.	26
DOCK8	81704	bcgsc.ca	37	9	386366	386366	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DOCK8	NM_203447	exon23	c.T2814C	p.Y938Y	.	.	85	4	53	0	.	517
DPEP1	1800	bcgsc.ca	37	16	89704365	89704365	+	Missense_Mutation	SNP	G	G	C	rs1126464	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DPEP1	NM_001128141	exon10	c.G1051C	p.E351Q	.	.	223	8	76	0	C|0.208;G|0.792;N|0.000	153
DPY19L2	283417	ucsc.edu	37	12	64059641	64059641	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DPY19L2	NM_173812	exon3	c.338-2A>G	.	.	.	43	4	24	0	.	515
DPY19L2P1	554236	broad.mit.edu	37	7	35131521	35131521	+	RNA	SNP	G	G	A	rs200009436		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	347	14	111	0	G|0.999;A|0.001	.
DSC2	1824	bcgsc.ca	37	18	28669486	28669486	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DSC2	NM_024422	exon5	c.T546C	p.P182P	.	.	144	5	61	0	.	517
DSG2	1829	bcgsc.ca	37	18	29104698	29104698	+	Silent	SNP	C	C	T	rs2230233	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DSG2	NM_001943	exon8	c.C861T	p.N287N	.	.	227	9	86	0	C|0.490;T|0.510	563
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DSPP	NM_014208	exon5	c.C3456T	p.D1152D	.	.	178	18	65	0	.	90
DST	667	bcgsc.ca	37	6	56417829	56417829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DST	NM_015548	exon42	c.T7892C	p.V2631A	.	.	107	5	50	0	.	523
DSTYK	25778	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	205180511	205180511	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DSTYK	NM_199462	exon1	c.C153T	p.F51F	.	.	30	12	8	0	.	333
DYNC1H1	1778	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102467528	102467528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DYNC1H1	NM_001376	exon20	c.G4232A	p.R1411H	.	.	261	90	109	2	.	98
DYNC2H1	79659	bcgsc.ca	37	11	103052558	103052558	+	Silent	SNP	T	T	C	rs11225584	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DYNC2H1	NM_001377	exon40	c.T6420C	p.N2140N	.	.	184	6	83	0	T|0.871;C|0.129	68
DYRK2	8445	broad.mit.edu	37	12	68051482	68051482	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DYRK2	NM_006482	exon3	c.G795A	p.E265E	.	.	77	4	30	0	.	861
ECI2	10455	bcgsc.ca	37	6	4116262	4116262	+	Missense_Mutation	SNP	G	G	A	rs7166	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ECI2	NM_206836	exon10	c.C1031T	p.A344V	.	.	157	7	75	0	G|0.699;A|0.301	90
ECI2	10455	bcgsc.ca	37	6	4133855	4133855	+	Missense_Mutation	SNP	C	C	T	rs3177253	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ECI2	NM_206836	exon2	c.G141A	p.M47I	.	.	455	11	130	0	C|0.821;T|0.179	90
ECT2L	345930	bcgsc.ca	37	6	139210118	139210118	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ECT2L	NM_001195037	exon19	c.A2364G	p.Q788Q	.	.	79	4	35	0	.	22
EFCAB5	374786	bcgsc.ca	37	17	28382921	28382921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EFCAB5	NM_198529	exon11	c.A2210G	p.E737G	.	.	165	5	83	0	.	70
EFTUD1	79631	bcgsc.ca	37	15	82533699	82533699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EFTUD1	NM_024580	exon5	c.T290C	p.V97A	.	.	126	5	41	0	.	91
EIF3C	8663	hgsc.bcm.edu	37	16	28734579	28734581	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EIF3C	NM_001199142	exon9	c.871_873del	p.291_291del	.	.	1879	16	190	1	.	1
EIF4G2	1982	bcgsc.ca	37	11	10824768	10824768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EIF4G2	NM_001042559	exon10	c.T887C	p.F296S	.	.	78	4	34	0	.	91
ELN	2006	hgsc.bcm.edu	37	7	73474235	73474235	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ELN	NM_001081754	exon23	c.C1449T	p.G483G	.	.	505	28	108	0	.	95
EME2	197342	ucsc.edu	37	16	1826076	1826076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EME2	NM_001257370	exon8	c.A977G	p.E326G	.	.	44	4	17	0	.	229
EML1	2009	bcgsc.ca	37	14	100331876	100331876	+	Silent	SNP	T	T	C	rs11160553	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EML1	NM_001008707	exon3	c.T276C	p.P92P	.	.	134	6	65	0	T|0.760;C|0.240	138
EML5	161436	bcgsc.ca	37	14	89205265	89205265	+	Missense_Mutation	SNP	T	T	C	rs17188228	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EML5	NM_183387	exon6	c.A805G	p.I269V	.	.	241	8	90	0	T|0.733;C|0.267	93
EOMES	8320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27758974	27758974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EOMES	NM_005442	exon6	c.A1648T	p.I550F	.	.	187	67	66	0	.	156
ERCC6	2074	bcgsc.ca	37	10	50708638	50708638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ERCC6	NM_000124	exon7	c.C1631T	p.T544I	.	.	109	6	38	0	.	1153
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	60200656	60200656	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ERCC8	NM_000082	exon5	c.T444C	p.H148H	.	.	322	130	108	0	.	227
EVPL	2125	hgsc.bcm.edu	37	17	74003252	74003252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EVPL	NM_001988	exon22	c.C6034A	p.P2012T	.	.	71	11	6	0	.	93
EXOC3	11336	bcgsc.ca	37	5	453567	453567	+	Silent	SNP	G	G	A	rs2672722	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EXOC3	NM_007277	exon4	c.G447A	p.E149E	.	.	136	7	54	0	G|0.438;A|0.562	90
FAM178B	51252	bcgsc.ca	37	2	97626108	97626108	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM178B	NM_001122646	exon6	c.T804C	p.F268F	.	.	191	6	61	0	.	90
FAM180A	389558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135418945	135418945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM180A	NM_205855	exon3	c.C300A	p.S100R	.	.	93	41	41	0	.	92
FAM182A	284800	bcgsc.ca	37	20	26061960	26061960	+	RNA	SNP	T	T	C	rs74714331	bycluster	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	317	39	94	11	.	.
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50724480	50724480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM186A	NM_001145475	exon7	c.A6910T	p.I2304L	.	.	285	110	92	0	.	68
FAM205B	389715	broad.mit.edu	37	9	34834937	34834937	+	RNA	SNP	A	A	G	rs524341	bycluster;by2hit2allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	128	11	67	0	A|0.500;G|0.500	.
FAM217A	222826	bcgsc.ca	37	6	4069685	4069685	+	Missense_Mutation	SNP	C	C	T	rs639905	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_173563	exon7	c.G772A	p.A258T	.	.	263	9	102	0	C|0.732;T|0.268	.
FAM22G	441457	bcgsc.ca	37	9	99699485	99699485	+	Missense_Mutation	SNP	G	G	C	rs7866127	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM22G	NM_001045477	exon5	c.G1122C	p.E374D	.	.	198	7	79	0	G|0.893;C|0.107	69
FAM9A	171482	bcgsc.ca	37	X	8766455	8766455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM9A	NM_174951	exon4	c.G286A	p.V96I	.	.	1029	18	172	0	.	130
FASLG	356	bcgsc.ca	37	1	172635110	172635110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FASLG	NM_000639	exon4	c.T800C	p.V267A	.	.	318	8	84	1	.	618
FAT4	79633	bcgsc.ca	37	4	126367627	126367627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAT4	NM_024582	exon8	c.A7373G	p.D2458G	.	.	229	7	70	0	.	108
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48780612	48780612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FBN1	NM_000138	exon26	c.G3161A	p.R1054K	.	.	123	52	40	0	.	92
FBXW9	84261	bcgsc.ca	37	19	12805433	12805433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FBXW9	NM_032301	exon3	c.G653A	p.G218D	.	.	80	4	53	0	.	227
FHAD1	114827	broad.mit.edu;bcgsc.ca	37	1	15723843	15723843	+	Silent	SNP	G	G	A	rs2294490	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FHAD1	NM_052929	exon31	c.G4173A	p.L1391L	.	.	188	9	78	0	G|0.663;A|0.337	69
FMN2	56776	bcgsc.ca	37	1	240370266	240370266	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FMN2	NM_020066	exon5	c.A2154G	p.S718S	.	.	109	5	46	0	.	145
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70316754	70316754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FOXO4	NM_005938	exon1	c.C376G	p.Q126E	.	.	283	115	91	0	.	986
FRG1	2483	bcgsc.ca	37	4	190878577	190878577	+	Missense_Mutation	SNP	A	A	G	rs75883191	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRG1	NM_004477	exon6	c.A457G	p.N153D	.	.	753	57	139	6	A|0.700;G|0.300	90
FRG1B	284802	broad.mit.edu;bcgsc.ca	37	20	29628300	29628300	+	RNA	SNP	G	G	A	rs71229055		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRG1B	.	.	.	.	.	.	1713	45	134	1	G|0.500;A|0.500	22
FRG1B	284802	broad.mit.edu;ucsc.edu	37	20	29625935	29625935	+	RNA	SNP	A	A	G	rs62198354	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRG1B	.	.	.	.	.	.	343	157	81	1	A|0.417;G|0.583	22
FRG1B	284802	bcgsc.ca	37	20	29623182	29623182	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRG1B	.	.	.	.	.	.	999	63	189	11	.	22
FRG1B	284802	bcgsc.ca	37	20	29628299	29628299	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRG1B	.	.	.	.	.	.	1765	70	134	3	.	22
FRK	2444	bcgsc.ca	37	6	116325142	116325142	+	Missense_Mutation	SNP	C	C	T	rs3756772	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRK	NM_002031	exon2	c.G364A	p.G122R	.	.	250	7	96	0	C|0.605;T|0.395	948
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12712563	12712563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRMPD4	NM_014728	exon9	c.T923C	p.L308P	.	.	328	132	103	0	.	263
FSD2	123722	bcgsc.ca	37	15	83434040	83434040	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FSD2	NM_001007122	exon11	c.T1698C	p.F566F	.	.	138	5	55	0	.	90
G6PC3	92579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42152763	42152763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	G6PC3	NM_138387	exon5	c.G621A	p.M207I	.	.	286	99	93	0	.	91
G6PD	2539	bcgsc.ca	37	X	153761272	153761272	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	G6PD	NM_000402	exon9	c.C1026A	p.P342P	.	.	181	6	53	0	.	135
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46967062	46967062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GABRA4	NM_000809	exon8	c.G1059T	p.R353S	.	.	620	230	165	0	.	156
GABRR2	2570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90009577	90009577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GABRR2	NM_002043	exon2	c.T121C	p.Y41H	.	.	190	79	74	0	.	68
GANAB	23193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62407128	62407128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GANAB	NM_198334	exon2	c.T114C	p.F38F	.	.	194	86	90	0	.	94
GAPT	202309	bcgsc.ca	37	5	57790725	57790725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GAPT	NM_152687	exon3	c.A362G	p.E121G	.	.	146	5	59	0	.	90
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34876612	34876612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GART	NM_001136005	exon22	c.A2852T	p.D951V	.	.	99	35	46	0	.	91
GCH1	2643	bcgsc.ca	37	14	55310562	55310562	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GCH1	NM_001024070	exon6	c.T652C	p.L218L	.	.	90	5	53	0	.	91
GEN1	348654	bcgsc.ca	37	2	17962898	17962898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GEN1	NM_182625	exon14	c.G2419A	p.A807T	.	.	85	4	46	0	.	359
GHSR	2693	ucsc.edu	37	3	172165637	172165637	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GHSR	NM_198407	exon1	c.C567A	p.G189G	.	.	29	4	14	0	.	501
GLDC	2731	bcgsc.ca	37	9	6605232	6605232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GLDC	NM_000170	exon6	c.T760C	p.F254L	.	.	197	6	58	0	.	92
GNE	10020	bcgsc.ca	37	9	36236893	36236893	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GNE	NM_001128227	exon4	c.A798G	p.L266L	.	.	173	6	67	0	.	115
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135487872	135487872	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR112	NM_153834	exon23	c.T8676C	p.S2892S	.	.	487	173	143	0	.	183
GPR126	57211	bcgsc.ca	37	6	142724993	142724993	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR126	NM_198569	exon14	c.A2010G	p.S670S	.	.	135	5	60	0	.	91
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36483358	36483358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR179	NM_001004334	exon11	c.G6094T	p.V2032L	.	.	142	57	70	0	.	93
GPRIN2	9721	bcgsc.ca	37	10	46999732	46999732	+	Silent	SNP	G	G	A	rs4579877	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPRIN2	NM_014696	exon3	c.G852A	p.G284G	.	.	169	9	52	0	G|0.530;A|0.470	90
GRIK4	2900	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	120827654	120827654	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GRIK4	NM_014619	exon14	c.T1866C	p.S622S	.	.	24	14	15	0	.	92
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13720174	13720174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GRIN2B	NM_000834	exon12	c.C2383T	p.L795F	.	.	172	69	61	0	.	231
GSS	2937	bcgsc.ca	37	20	33530397	33530397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GSS	NM_000178	exon5	c.A385G	p.M129V	.	.	125	5	42	0	.	93
GUCY2F	2986	bcgsc.ca	37	X	108619391	108619391	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	GUCY2F,NS,carcinoma,-1	GUCY2F	NM_001522	exon18	c.A3156G	p.K1052K	.	.	219	6	84	0	.	540
GUSBP1	728411	bcgsc.ca	37	5	21482761	21482761	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	109	14	28	1	.	.
GUSBP1	728411	bcgsc.ca	37	5	21482802	21482802	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	149	13	45	1	.	.
HARS2	23438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140077173	140077173	+	Missense_Mutation	SNP	G	G	A	rs150761811		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HARS2	NM_012208	exon11	c.G1217A	p.R406Q	.	.	162	63	63	0	G|1.000;A|0.000	90
HEATR1	55127	bcgsc.ca	37	1	236721633	236721633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HEATR1	NM_018072	exon36	c.A5108G	p.E1703G	.	.	347	9	109	0	.	93
HEATR2	54919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	810170	810170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HEATR2	NM_017802	exon9	c.T1846C	p.S616P	.	.	228	133	54	2	.	69
HECW2	57520	bcgsc.ca	37	2	197184221	197184221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HECW2	NM_020760	exon9	c.T1393C	p.S465P	.	.	191	6	73	0	.	668
HESX1	8820	hgsc.bcm.edu	37	3	57232250	57232250	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HESX1	NM_003865	exon4	c.533delA	p.N178fs	.	.	814	14	172	2	.	227
HEXDC	284004	broad.mit.edu	37	17	80395212	80395212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HEXDC	NM_173620	exon8	c.A872G	p.Q291R	.	.	78	7	13	0	.	92
HLA-A	3105	bcgsc.ca	37	6	29910700	29910700	+	Silent	SNP	G	G	T	rs1059452	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HLA-A	NM_001242758	exon2	c.G240T	p.G80G	.	.	242	36	59	0	G|0.769;T|0.231	92
HLA-B	3106	bcgsc.ca	37	6	31324077	31324077	+	Silent	SNP	C	C	G	rs709053	bycluster;byfrequency;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HLA-B	NM_005514	exon3	c.G486C	p.T162T	.	.	159	24	44	2	G|0.630;C|0.370	90
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185950141	185950141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HMCN1	NM_031935	exon17	c.T2598G	p.I866M	.	.	204	51	64	0	.	113
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121416711	121416714	+	Frame_Shift_Del	DEL	GGGA	GGGA	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GGGA	GGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HNF1A	NM_000545	exon1	c.140_143del	p.47_48del	.	.	96	33	42	0	.	1745
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	121432014	121432014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HNF1A	NM_000545	exon4	c.T761A	p.L254Q	.	.	71	21	34	0	.	1745
HOOK1	51361	bcgsc.ca	37	1	60287603	60287603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HOOK1	NM_015888	exon2	c.T137C	p.V46A	.	.	76	4	34	0	.	154
HPSE2	60495	bcgsc.ca	37	10	100380400	100380400	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HPSE2	NM_001166246	exon8	c.A1164G	p.G388G	.	.	130	6	56	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657886	49657886	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HRC	NM_002152	exon1	c.G609A	p.E203E	.	.	219	9	79	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657889	49657889	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HRC	NM_002152	exon1	c.A606G	p.E202E	.	.	219	16	79	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HRC	NM_002152	exon1	c.A579G	p.E193E	.	.	238	13	84	0	.	91
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765	bysubmitter	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	573	22	150	1	A|1.000;|0.000	.
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135582923	135582923	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HTATSF1	NM_001163280	exon5	c.T516G	p.L172L	.	.	579	246	155	0	.	132
HTR1F	3355	broad.mit.edu;bcgsc.ca	37	3	88040156	88040156	+	Missense_Mutation	SNP	G	G	A	rs148774926	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HTR1F	NM_000866	exon2	c.G257A	p.R86K	.	.	140	8	84	0	G|0.999;A|0.001	93
IDH3A	3419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78454584	78454584	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IDH3A	NM_005530	exon6	c.T486C	p.D162D	.	.	106	64	26	0	.	226
IFNA5	3442	bcgsc.ca	37	9	21304803	21304803	+	Silent	SNP	G	G	A	rs10757212	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IFNA5	NM_002169	exon1	c.C453T	p.T151T	.	.	441	10	137	0	G|0.717;A|0.283	91
IGSF22	283284	bcgsc.ca	37	11	18738281	18738281	+	Missense_Mutation	SNP	C	C	T	rs10766494	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IGSF22	NM_173588	exon10	c.G1240A	p.V414I	.	.	133	6	55	0	C|0.232;T|0.768	140
IL12A	3592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	159708075	159708075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IL12A	NM_000882	exon2	c.G240T	p.R80S	.	.	142	40	45	0	.	90
IMMT	10989	bcgsc.ca	37	2	86371883	86371883	+	Silent	SNP	T	T	C	rs8244	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IMMT	NM_006839	exon15	c.A1785G	p.A595A	.	.	74	8	44	0	T|0.230;G|0.182;C|0.129;A|0.459	91
ING2	3622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184431731	184431731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ING2	NM_001564	exon2	c.A469G	p.T157A	.	.	211	79	75	0	.	91
INPPL1	3636	bcgsc.ca	37	11	71945631	71945631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	INPPL1	NM_001567	exon21	c.T2387C	p.V796A	.	.	109	6	47	0	.	660
INTS4	92105	ucsc.edu	37	11	77639466	77639466	+	Silent	SNP	A	A	G	rs78915230	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	INTS4	NM_033547	exon11	c.T1293C	p.S431S	.	.	357	69	108	7	A|0.500;G|0.500	92
IRF8	3394	ucsc.edu	37	16	85954877	85954877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IRF8	NM_002163	exon9	c.A1270G	p.I424V	.	.	36	4	24	0	.	154
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145528004	145528004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITGA10	NM_003637	exon3	c.G241C	p.A81P	.	.	253	146	50	0	.	231
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106075119	106075119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITPRIP	NM_001272013	exon2	c.C691T	p.R231C	.	.	77	43	38	0	.	90
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106075611	106075611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITPRIP	NM_001272013	exon2	c.G199C	p.E67Q	.	.	80	25	30	0	.	90
JAK1	3716	hgsc.bcm.edu	37	1	65316546	65316547	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	JAK1	NM_002227	exon12	c.1696_1697insG	p.P566fs	.	.	127	12	38	0	.	3900
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65479799	65479799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KAT5	NM_182710	exon1	c.A61G	p.R21G	.	.	104	37	56	0	.	90
KCNJ18	100134444	bcgsc.ca	37	17	21318948	21318948	+	Silent	SNP	C	C	T	rs112314728		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001194958	exon3	c.C294T	p.F98F	.	.	183	60	74	3	C|0.500;T|0.500	.
KCNJ18	100134444	bcgsc.ca	37	17	21318951	21318951	+	Silent	SNP	C	C	T	rs75757803		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001194958	exon3	c.C297T	p.G99G	.	.	172	51	74	1	C|0.500;T|0.500	.
KCNJ18	100134444	bcgsc.ca	37	17	21319465	21319465	+	Silent	SNP	T	T	C	rs77724065	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001194958	exon3	c.T811C	p.L271L	.	.	117	24	61	0	T|0.500;C|0.500	.
KCNJ18	100134444	bcgsc.ca	37	17	21319488	21319488	+	Silent	SNP	C	C	T	rs77176173	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001194958	exon3	c.C834T	p.S278S	.	.	113	18	54	0	C|0.989;T|0.011	.
KCNJ18	100134444	bcgsc.ca	37	17	21319519	21319519	+	Missense_Mutation	SNP	G	G	C	rs78113532	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001194958	exon3	c.G865C	p.E289Q	.	.	129	26	49	1	G|0.940;C|0.060	.
KCNJ18	100134444	bcgsc.ca	37	17	21319743	21319743	+	Silent	SNP	A	A	G	rs76267885	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001194958	exon3	c.A1089G	p.V363V	.	.	80	31	43	2	A|0.583;G|0.417	.
KCNK16	83795	hgsc.bcm.edu	37	6	39286868	39286870	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KCNK16	NM_001135106	exon2	c.253_255del	p.85_85del	.	.	81	0	30	0	.	229
KCNK16	83795	hgsc.bcm.edu	37	6	39286869	39286870	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KCNK16	NM_001135106	exon2	c.253_254del	p.85_85del	.	.	80	25	30	0	.	229
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44176879	44176879	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KCTD8	NM_198353	exon2	c.C1350T	p.I450I	.	.	210	98	93	0	.	92
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66975117	66975117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM2A	NM_012308	exon6	c.T444A	p.F148L	.	.	125	50	42	0	.	661
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66986855	66986855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM2A	NM_012308	exon10	c.A938G	p.N313S	.	.	153	65	58	0	.	661
KDM4A	9682	bcgsc.ca	37	1	44154609	44154609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM4A	NM_014663	exon13	c.A1880G	p.E627G	.	.	69	4	33	0	.	227
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6981046	6981046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM4C	NM_001146696	exon9	c.C1109T	p.P370L	.	.	92	45	38	0	.	228
KIAA0556	23247	bcgsc.ca	37	16	27639990	27639990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA0556	NM_015202	exon4	c.A149G	p.K50R	.	.	156	5	57	0	.	141
KIAA0753	9851	bcgsc.ca	37	17	6515387	6515387	+	Missense_Mutation	SNP	A	A	G	rs2289642	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA0753	NM_014804	exon8	c.T1397C	p.L466P	.	.	202	8	103	0	A|0.341;G|0.659	90
KIAA0895L	653319	bcgsc.ca	37	16	67214416	67214416	+	Missense_Mutation	SNP	C	C	T	rs59692769	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA0895L	NM_001040715	exon2	c.G98A	p.R33Q	.	.	150	5	49	0	C|0.948;T|0.052	68
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155899509	155899509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA0907	NM_014949	exon3	c.A378C	p.Q126H	.	.	219	68	59	0	.	90
KIAA1210	57481	broad.mit.edu	37	X	118222123	118222123	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA1210	NM_020721	exon11	c.C3070T	p.Q1024X	.	.	285	7	90	0	.	67
KIAA1244	57221	bcgsc.ca	37	6	138649263	138649263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA1244	NM_020340	exon32	c.G5107A	p.G1703R	.	.	67	4	34	0	.	228
KIAA1731	85459	bcgsc.ca	37	11	93417257	93417257	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA1731	NM_033395	exon9	c.A1077G	p.P359P	.	.	91	4	41	0	.	22
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86457172	86457172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIF27	NM_017576	exon17	c.G3701A	p.R1234Q	.	.	603	245	138	0	.	523
KIF5B	3799	hgsc.bcm.edu	37	10	32311826	32311826	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIF5B	NM_004521	exon16	c.1864delA	p.M622fs	.	.	807	16	159	1	.	399
KLHL38	340359	bcgsc.ca	37	8	124658214	124658214	+	Missense_Mutation	SNP	C	C	T	rs11779866	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KLHL38	NM_001081675	exon3	c.G1511A	p.C504Y	.	.	186	8	67	0	C|0.937;T|0.063	68
KPNA4	3840	bcgsc.ca	37	3	160222757	160222757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KPNA4	NM_002268	exon16	c.T1456C	p.S486P	.	.	114	6	47	0	.	226
KRT15	3866	bcgsc.ca	37	17	39672243	39672243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRT15	NM_002275	exon5	c.A920G	p.E307G	.	.	258	7	78	0	.	90
KRT37	8688	bcgsc.ca	37	17	39580559	39580559	+	Missense_Mutation	SNP	T	T	A	rs9916475	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRT37	NM_003770	exon1	c.A217T	p.S73C	.	.	119	6	37	0	T|0.605;A|0.395	91
KRT38	8687	bcgsc.ca	37	17	39594468	39594468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRT38	NM_006771	exon6	c.T1118C	p.L373P	.	.	164	6	62	0	.	92
KRT76	51350	bcgsc.ca	37	12	53164982	53164986	+	Frame_Shift_Del	DEL	TTGCC	TTGCC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	TTGCC	TTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRT76	NM_015848	exon7	c.1281_1285del	p.427_429del	.	.	192	5	73	0	.	154
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP10-4	NM_198687	exon1	c.C216T	p.C72C	.	.	101	19	45	0	C|1.000;|0.000	90
KRTAP10-6	386674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46011435	46011435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP10-6	NM_198688	exon1	c.G931T	p.V311L	.	.	306	119	95	0	.	90
KRTAP10-9	386676	bcgsc.ca	37	21	46047354	46047354	+	Missense_Mutation	SNP	A	A	G	rs62220927	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_198690	exon1	c.A266G	p.Y89C	.	.	166	43	34	1	A|0.897;G|0.103	.
KRTAP4-4	84616	ucsc.edu	37	17	39316870	39316870	+	Missense_Mutation	SNP	T	T	C	rs385055	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP4-4	NM_032524	exon1	c.A74G	p.Y25C	.	.	131	38	42	2	T|0.891;C|0.109	44
KRTAP4-6	81871	broad.mit.edu	37	17	39296412	39296412	+	Missense_Mutation	SNP	T	T	A	rs200470462		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_030976	exon1	c.A328T	p.S110C	.	.	72	8	32	0	.	.
KRTAP5-8	57830	bcgsc.ca	37	11	71249471	71249471	+	Missense_Mutation	SNP	A	A	T	rs112605265		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP5-8	NM_021046	exon1	c.A370T	p.S124C	.	.	202	20	65	1	A|0.500;T|0.500	44
KRTAP5-8	57830	hgsc.bcm.edu;bcgsc.ca	37	11	71249121	71249121	+	Missense_Mutation	SNP	C	C	G	rs200585722		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP5-8	NM_021046	exon1	c.C20G	p.S7C	.	.	325	17	72	0	.	44
KRTAP5-8	57830	ucsc.edu	37	11	71249125	71249125	+	Silent	SNP	A	A	G	rs113379698		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP5-8	NM_021046	exon1	c.A24G	p.G8G	.	.	318	67	68	7	A|0.500;G|0.500	44
KRTAP9-2	83899	ucsc.edu	37	17	39382942	39382942	+	Silent	SNP	C	C	A	rs79961737		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP9-2	NM_031961	exon1	c.C36A	p.T12T	.	.	162	66	51	12	C|0.125;A|0.875	23
L1TD1	54596	bcgsc.ca	37	1	62673287	62673287	+	Missense_Mutation	SNP	A	A	C	rs2457828	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	L1TD1	NM_001164835	exon4	c.A987C	p.K329N	.	.	96	4	52	0	A|0.905;C|0.095	92
LACE1	246269	bcgsc.ca	37	6	108687466	108687466	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LACE1	NM_145315	exon6	c.G678T	p.L226L	.	.	89	4	47	0	.	90
LAMB1	3912	bcgsc.ca	37	7	107569517	107569517	+	Silent	SNP	A	A	G	rs1131398	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LAMB1	NM_002291	exon31	c.T4879C	p.L1627L	.	.	783	17	176	0	A|0.547;G|0.453	97
LAMC1	3915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183106886	183106886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LAMC1	NM_002293	exon26	c.A4397G	p.K1466R	.	.	524	149	129	1	.	252
LDLR	3949	bcgsc.ca	37	19	11238682	11238682	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LDLR	NM_001195803	exon14	c.1778-2A>G	.	.	.	54	4	31	0	.	94
LILRA6	79168	ucsc.edu	37	19	54745978	54745978	+	Silent	SNP	T	T	C	rs1052964	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LILRA6	NM_024318	exon3	c.A279G	p.A93A	.	.	2395	583	186	23	T|0.500;C|0.500	24
LILRA6	79168	ucsc.edu	37	19	54745989	54745989	+	Missense_Mutation	SNP	G	G	C	rs16985555	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LILRA6	NM_024318	exon3	c.C268G	p.Q90E	.	.	2599	492	188	13	G|0.667;C|0.333	24
LILRB1	10859	bcgsc.ca	37	19	55143982	55143982	+	Silent	SNP	T	T	C	rs10427127	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LILRB1	NM_001081637	exon6	c.T729C	p.T243T	.	.	318	9	113	1	T|0.900;C|0.100	137
LILRB1	10859	hgsc.bcm.edu	37	19	55148088	55148088	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LILRB1	NM_001081637	exon14	c.G1797A	p.R599R	.	.	289	12	99	0	.	137
LILRB2	10288	bcgsc.ca	37	19	54782710	54782710	+	Silent	SNP	A	A	G	rs7247208	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LILRB2	NM_005874	exon6	c.T912C	p.S304S	.	.	166	61	41	2	A|0.695;G|0.305	91
LILRP2	79166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55222131	55222131	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	123	48	59	0	.	.
LIN28B	389421	bcgsc.ca	37	6	105526647	105526647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LIN28B	NM_001004317	exon4	c.A742G	p.K248E	.	.	67	4	40	0	.	90
LMTK2	22853	bcgsc.ca	37	7	97834788	97834788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LMTK2	NM_014916	exon14	c.A4496G	p.D1499G	.	.	78	4	33	0	.	1381
LOC100132247	0	broad.mit.edu;bcgsc.ca	37	16	22545897	22545897	+	Missense_Mutation	SNP	G	G	T	rs143579045		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001135865	exon7	c.G1593T	p.K531N	.	.	55	8	26	0	.	.
LOC100653515	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76886840	76886840	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001243540	exon3	c.C1746T	p.D582D	.	.	599	126	120	0	.	.
LPHN3	23284	bcgsc.ca	37	4	62800728	62800728	+	Silent	SNP	T	T	C	rs734644	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LPHN3	NM_015236	exon11	c.T2079C	p.N693N	.	.	185	7	63	0	T|0.303;C|0.697	508
LPIN2	9663	ucsc.edu;bcgsc.ca	37	18	2923820	2923820	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LPIN2	NM_014646	exon16	c.A2127G	p.K709K	.	.	45	4	28	0	.	227
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197592314	197592314	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LRCH3	NM_032773	exon16	c.T1737C	p.A579A	.	.	253	93	107	0	.	91
LRP1B	53353	bcgsc.ca	37	2	141291692	141291692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LRP1B	NM_018557	exon47	c.A7660G	p.R2554G	.	.	97	7	45	0	.	311
LRP4	4038	bcgsc.ca	37	11	46898049	46898049	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LRP4	NM_002334	exon25	c.T3504C	p.S1168S	.	.	134	7	42	0	.	94
LRP4	4038	bcgsc.ca	37	11	46898769	46898769	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LRP4	NM_002334	exon23	c.T3258C	p.I1086I	.	.	130	5	56	0	.	94
LRP8	7804	bcgsc.ca	37	1	53728119	53728119	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LRP8	NM_004631	exon11	c.G1773T	p.L591L	.	.	79	4	32	0	.	90
MACF1	23499	ucsc.edu	37	1	39924917	39924917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MACF1	NM_012090	exon88	c.A15179G	p.E5060G	.	.	53	12	22	1	.	165
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166974345	166974345	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAEL	NM_032858	exon7	c.G681A	p.L227L	.	.	398	104	113	0	.	91
MAGEA3	4102	hgsc.bcm.edu	37	X	151936132	151936132	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAGEA3	NM_005362	exon3	c.35delC	p.P12fs	.	.	226	23	119	0	.	90
MAGEA6	4105	hgsc.bcm.edu	37	X	151869343	151869343	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAGEA6	NM_005363	exon3	c.33delG	p.K11fs	.	.	238	25	111	0	.	90
MAGEL2	54551	broad.mit.edu;mdanderson.org	37	15	23889987	23889987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_019066	exon1	c.G2903T	p.S968I	.	.	17	6	10	0	.	.
MAML2	84441	hgsc.bcm.edu	37	11	95825206	95825206	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAML2	NM_032427	exon2	c.G1989A	p.Q663Q	.	.	241	25	57	0	.	850
MAML2	84441	ucsc.edu	37	11	95825383	95825383	+	Silent	SNP	C	C	T	rs113349418		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAML2	NM_032427	exon2	c.G1812A	p.Q604Q	.	.	282	2	29	9	C|0.500;T|0.500	850
MAN2A1	4124	bcgsc.ca	37	5	109110591	109110591	+	Silent	SNP	G	G	A	rs61735369	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAN2A1	NM_002372	exon8	c.G1299A	p.T433T	.	.	143	5	58	0	G|0.920;A|0.080	92
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	43652777	43652777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAOB	NM_000898	exon8	c.C817A	p.H273N	.	.	461	152	142	0	.	555
MAP1A	4130	bcgsc.ca	37	15	43813898	43813898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAP1A	NM_002373	exon4	c.T227C	p.V76A	.	.	72	4	35	0	.	141
MAP2	4133	bcgsc.ca	37	2	210594977	210594977	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAP2	NM_002374	exon15	c.A5340G	p.T1780T	.	.	133	5	72	0	.	591
MAP2K1	5604	bcgsc.ca	37	15	66781553	66781553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAP2K1	NM_002755	exon9	c.C961T	p.P321S	.	.	158	5	65	0	.	978
MAP3K6	9064	broad.mit.edu;ucsc.edu	37	1	27687685	27687685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAP3K6	NM_004672	exon13	c.G1795A	p.V599I	.	.	45	5	14	0	.	1523
MARCH10	162333	bcgsc.ca	37	17	60814273	60814273	+	Missense_Mutation	SNP	A	A	G	rs9891498	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MARCH10	NM_001100875	exon6	c.T956C	p.F319S	.	.	633	14	121	0	A|0.682;G|0.318	90
MB21D1	115004	bcgsc.ca	37	6	74135016	74135016	+	Silent	SNP	C	C	T	rs311678	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MB21D1	NM_138441	exon5	c.G1503A	p.K501K	.	.	73	4	33	0	C|0.291;T|0.709	90
MB21D1	115004	bcgsc.ca	37	6	74155345	74155345	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MB21D1	NM_138441	exon2	c.T783C	p.P261P	.	.	164	5	73	0	.	90
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182756877	182756877	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MCCC1	NM_020166	exon12	c.C1314G	p.V438V	.	.	194	89	70	0	.	92
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	88025144	88025144	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MEF2C	NM_001193347	exon10	c.C885A	p.S295S	.	.	119	43	54	0	.	704
MEIS2	4212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	37329148	37329148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MEIS2	NM_170676	exon8	c.A767T	p.D256V	.	.	236	114	83	0	.	92
MFSD5	84975	bcgsc.ca	37	12	53647095	53647095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MFSD5	NM_001170790	exon2	c.G797T	p.R266L	.	.	98	6	51	1	.	93
MFSD6L	162387	bcgsc.ca	37	17	8701060	8701060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MFSD6L	NM_152599	exon1	c.T1379C	p.I460T	.	.	87	6	36	0	.	90
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42059127	42059127	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGA	NM_001164273	exon24	c.G8847A	p.K2949K	.	.	80	26	49	0	.	522
MGAM	8972	ucsc.edu	37	7	141759274	141759274	+	Silent	SNP	T	T	C	rs77338861		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGAM	NM_004668	exon32	c.T3822C	p.D1274D	.	.	181	35	62	5	C|1.000;|0.000	70
MGAM	8972	ucsc.edu	37	7	141759340	141759340	+	Silent	SNP	T	T	C	rs77280574		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGAM	NM_004668	exon32	c.T3888C	p.A1296A	.	.	319	65	87	0	C|1.000;|0.000	70
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	86374008	86374008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGAT4C	NM_013244	exon7	c.G496T	p.A166S	.	.	109	48	44	0	.	93
MGST3	4259	bcgsc.ca	37	1	165619170	165619170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGST3	NM_004528	exon2	c.T86C	p.V29A	.	.	133	6	31	0	.	90
MIA3	375056	bcgsc.ca	37	1	222833538	222833538	+	Silent	SNP	C	C	G	rs2291835	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MIA3	NM_198551	exon24	c.C4995G	p.G1665G	.	.	196	6	89	0	C|0.832;G|0.168	98
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18273818	18273818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MICAL3	NM_015241	exon31	c.G5770A	p.E1924K	.	.	52	21	21	0	.	68
MKI67	4288	hgsc.bcm.edu	37	10	129904535	129904535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MKI67	NM_002417	exon13	c.5569delA	p.I1857fs	.	.	1051	13	184	0	.	519
MLF1	4291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	158322940	158322940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MLF1	NM_001195432	exon9	c.G849C	p.L283F	.	.	267	119	102	0	.	658
MMP16	4325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	89339405	89339405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MMP16	NM_005941	exon1	c.C31G	p.R11G	.	.	113	32	65	0	.	231
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	58979138	58979139	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MPEG1	NM_001039396	exon1	c.1201_1202insC	p.E401fs	.	.	127	36	55	0	.	70
MST1L	11223	broad.mit.edu	37	1	17083807	17083807	+	Missense_Mutation	SNP	T	T	C	rs9286084		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001271733	exon15	c.A1990G	p.T664A	.	.	212	76	51	0	.	.
MST1L	11223	ucsc.edu	37	1	17085564	17085564	+	Missense_Mutation	SNP	A	A	G	rs80308386	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001271733	exon9	c.T1157C	p.L386P	.	.	86	30	31	6	A|0.625;G|0.375	.
MST1P2	11209	ucsc.edu	37	1	16976193	16976193	+	RNA	SNP	C	C	T	rs61772256		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	194	69	74	13	C|0.616;T|0.384	.
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121530146	121530146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MTBP	NM_022045	exon19	c.A2302G	p.N768D	.	.	108	46	34	0	.	228
MTOR	2475	bcgsc.ca	37	1	11175463	11175463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MTOR	NM_004958	exon51	c.A7079G	p.D2360G	.	.	96	4	55	0	.	1439
MUC16	94025	bcgsc.ca	37	19	9074661	9074661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC16	NM_024690	exon3	c.T12785C	p.I4262T	.	.	168	7	68	1	.	566
MUC21	394263	bcgsc.ca	37	6	30954309	30954309	+	Silent	SNP	A	A	T	rs150035336	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC21	NM_001010909	exon2	c.A357T	p.T119T	.	.	238	17	73	2	A|0.999;T|0.001	92
MUC21	394263	bcgsc.ca	37	6	30954648	30954648	+	Silent	SNP	G	G	A	rs147486343	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC21	NM_001010909	exon2	c.G696A	p.T232T	.	.	130	28	45	2	G|0.993;A|0.007	92
MUC4	4585	bcgsc.ca	37	3	195505835	195505835	+	Missense_Mutation	SNP	C	C	T	rs58500707		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.G12616A	p.A4206T	.	.	229	27	79	1	.	90
MUC4	4585	bcgsc.ca	37	3	195506917	195506917	+	Missense_Mutation	SNP	A	A	C	rs150128295		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.T11534G	p.I3845S	.	.	103	22	35	0	A|0.832;C|0.168	90
MUC4	4585	bcgsc.ca	37	3	195508005	195508005	+	Silent	SNP	A	A	G	rs79196348		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.T10446C	p.S3482S	.	.	235	50	74	3	A|0.200;G|0.800	90
MUC4	4585	bcgsc.ca	37	3	195508510	195508510	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.T9941A	p.L3314H	.	.	155	15	47	1	.	90
MUC4	4585	bcgsc.ca	37	3	195511412	195511412	+	Missense_Mutation	SNP	T	T	A	rs199878638		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.A7039T	p.T2347S	.	.	220	48	66	0	.	90
MUC4	4585	bcgsc.ca	37	3	195511431	195511431	+	Silent	SNP	A	A	G	rs201715837	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.T7020C	p.T2340T	.	.	227	61	65	0	A|0.981;G|0.019	90
MUC4	4585	bcgsc.ca	37	3	195511446	195511446	+	Silent	SNP	C	C	G	rs78227722	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.G7005C	p.T2335T	.	.	231	93	59	3	C|0.697;G|0.303	90
MUC4	4585	bcgsc.ca	37	3	195511465	195511465	+	Missense_Mutation	SNP	G	G	A	rs200967978	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.C6986T	p.A2329V	.	.	219	65	52	1	G|0.996;A|0.005	90
MUC4	4585	broad.mit.edu	37	3	195505833	195505833	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.C12618T	p.A4206A	.	.	237	7	79	1	.	90
MUC4	4585	broad.mit.edu	37	3	195513758	195513758	+	Missense_Mutation	SNP	G	G	C	rs202045385		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.C4693G	p.H1565D	.	.	256	9	88	2	.	90
MUC4	4585	broad.mit.edu	37	3	195513806	195513806	+	Missense_Mutation	SNP	C	C	G	rs199976859	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.G4645C	p.D1549H	.	.	159	15	52	1	C|0.932;G|0.068	90
MUC4	4585	broad.mit.edu	37	3	195513812	195513812	+	Missense_Mutation	SNP	T	T	A	rs201142885	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.A4639T	p.T1547S	.	.	150	8	50	1	T|0.976;A|0.023	90
MUC4	4585	hgsc.bcm.edu	37	3	195515368	195515415	+	In_Frame_Del	DEL	GTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCTG	GTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCTG	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCTG	GTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC4	NM_018406	exon2	c.3036_3083del	p.1012_1028del	.	.	208	0	63	0	.	90
MUC6	4588	hgsc.bcm.edu	37	11	1017519	1017519	+	Missense_Mutation	SNP	A	A	G	rs112553306	bycluster;byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC6	NM_005961	exon31	c.T5282C	p.V1761A	.	.	1513	139	182	0	A|0.500;G|0.500	23
MUC6	4588	ucsc.edu;bcgsc.ca	37	11	1018031	1018031	+	Silent	SNP	G	G	A	rs10751678	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC6	NM_005961	exon31	c.C4770T	p.P1590P	.	.	397	142	106	0	G|0.595;A|0.405	23
MUC7	4589	ucsc.edu;bcgsc.ca	37	4	71347207	71347207	+	Missense_Mutation	SNP	T	T	C	rs78564790	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MUC7	NM_001145007	exon4	c.T746C	p.L249P	.	.	796	106	168	2	T|0.935;C|0.065	93
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3240505	3240505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MXRA5	NM_015419	exon5	c.A3221T	p.E1074V	.	.	520	190	132	0	.	136
MYBPC3	4607	bcgsc.ca	37	11	47364379	47364379	+	Splice_Site	SNP	A	A	G	rs112999777	bycluster	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYBPC3	NM_000256	exon16	c.1457+2T>C	.	.	.	153	7	62	0	T|1.000	92
MYH11	4629	bcgsc.ca	37	16	15818225	15818225	+	Silent	SNP	G	G	A	rs112377790	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYH11	NM_001040114	exon32	c.C4179T	p.T1393T	.	.	207	7	73	0	G|0.992;A|0.008	666
MYH13	8735	bcgsc.ca	37	17	10265491	10265491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYH13	NM_003802	exon5	c.A449G	p.E150G	.	.	230	9	90	2	.	6
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23897841	23897841	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYH7	NM_000257	exon15	c.C1446T	p.N482N	.	.	381	19	96	0	.	94
MYH8	4626	broad.mit.edu;bcgsc.ca	37	17	10296419	10296419	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYH8	NM_002472	exon36	c.A5275C	p.K1759Q	.	.	431	16	165	0	.	101
MYO16	23026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	109540788	109540788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO16	NM_001198950	exon14	c.G1622T	p.G541V	.	.	202	81	69	0	.	142
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27493801	27493801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO18A	NM_078471	exon2	c.A158G	p.K53R	.	.	225	81	79	0	.	22
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423608	26423608	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO18B	NM_032608	exon43	c.T7668C	p.D2556D	.	.	93	35	39	0	.	142
MYO1C	4641	ucsc.edu;bcgsc.ca	37	17	1381481	1381481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO1C	NM_001080779	exon12	c.A1301G	p.E434G	.	.	32	4	35	0	.	90
MYO1E	4643	bcgsc.ca	37	15	59510189	59510189	+	Silent	SNP	G	G	A	rs2230155	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO1E	NM_004998	exon10	c.C1008T	p.S336S	.	.	305	11	100	0	T|0.099;G|0.485;C|0.101;A|0.315	514
MYO9A	4649	bcgsc.ca	37	15	72120332	72120332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO9A	NM_006901	exon41	c.C7076T	p.P2359L	.	.	191	6	81	0	.	93
NAA15	80155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140272693	140272693	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NAA15	NM_057175	exon9	c.A942G	p.L314L	.	.	216	96	86	0	.	92
NAALADL2	254827	broad.mit.edu;bcgsc.ca	37	3	175293976	175293976	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NAALADL2	NM_207015	exon10	c.1800+1G>T	.	.	.	169	7	57	0	.	47
NASP	4678	ucsc.edu	37	1	46073273	46073273	+	Silent	SNP	G	G	A	rs200423416		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NASP	NM_002482	exon6	c.G690A	p.G230G	.	.	93	27	28	9	G|0.998;A|0.002	91
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35672500	35672500	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NBEA	NM_015678	exon11	c.G1638T	p.L546L	.	.	178	64	70	0	.	144
NBPF10	100132406	bcgsc.ca	37	1	145293566	145293566	+	Missense_Mutation	SNP	G	G	A	rs78185633	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001039703	exon1	c.G161A	p.R54Q	.	.	450	97	81	9	G|0.667;A|0.333	.
NBPF14	25832	bcgsc.ca	37	1	148010942	148010942	+	Silent	SNP	G	G	A	rs184356822		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NBPF14	NM_015383	exon14	c.C1680T	p.Y560Y	.	.	1403	81	156	4	.	91
NBPF14	25832	broad.mit.edu	37	1	148010987	148010987	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NBPF14	NM_015383	exon14	c.A1635G	p.S545S	.	.	1283	44	129	0	.	91
NBPF9	400818	broad.mit.edu	37	1	144828583	144828583	+	Silent	SNP	G	G	A	rs76717388		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	483	42	98	0	G|0.500;A|0.500	.
NCOA1	8648	bcgsc.ca	37	2	24930657	24930657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NCOA1	NM_147223	exon11	c.T2318C	p.V773A	.	.	306	7	108	0	.	228
NCOA4	8031	bcgsc.ca	37	10	51585169	51585169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NCOA4	NM_001145261	exon9	c.A1316G	p.E439G	.	.	190	8	79	0	.	1042
NCOR1P1	149934	bcgsc.ca	37	20	26084228	26084228	+	RNA	SNP	G	G	A	rs75212180	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	391	24	111	0	G|0.500;A|0.500	.
NCR2	9436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41309741	41309741	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NCR2	NM_001199509	exon4	c.G534T	p.P178P	.	.	63	27	29	0	.	91
ND2	0	bcgsc.ca	37	MT	5040	5040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	ENST00000361453	exon1	c.A571G	p.I191V	.	.	307	11	58	0	.	.
ND6	0	broad.mit.edu;bcgsc.ca	37	MT	14459	14459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	ENST00000361681	exon1	c.C215A	p.A72E	.	.	358	24	76	0	.	.
NDST4	64579	bcgsc.ca	37	4	115748991	115748991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NDST4	NM_022569	exon14	c.A2600G	p.E867G	.	.	130	6	53	0	.	94
NDUFAF7	55471	bcgsc.ca	37	2	37468914	37468914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_144736	exon5	c.A602G	p.D201G	.	.	100	5	43	0	.	.
NEB	4703	bcgsc.ca	37	2	152424670	152424670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NEB	NM_001271208	exon113	c.A17759G	p.E5920G	.	.	181	8	78	0	.	145
NEB	4703	bcgsc.ca	37	2	152492814	152492814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NEB	NM_001271208	exon64	c.A9029G	p.K3010R	.	.	59	5	35	0	.	145
NEBL	10529	bcgsc.ca	37	10	21108377	21108377	+	Silent	SNP	C	C	T	rs1006363	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NEBL	NM_006393	exon20	c.G2031A	p.R677R	.	.	316	9	105	0	C|0.789;T|0.211	92
NELFB	25920	ucsc.edu;bcgsc.ca	37	9	140157661	140157661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_015456	exon5	c.A770G	p.D257G	.	.	41	4	30	0	.	.
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156640645	156640645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NES	NM_006617	exon4	c.G3335T	p.G1112V	.	.	141	43	37	0	.	520
NEUROG1	4762	ucsc.edu;bcgsc.ca	37	5	134871330	134871330	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NEUROG1	NM_006161	exon1	c.C51T	p.S17S	.	.	48	4	31	0	.	90
NGEF	25791	ucsc.edu;bcgsc.ca	37	2	233745877	233745877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NGEF	NM_019850	exon14	c.A1921G	p.I641V	.	.	46	4	33	0	.	313
NID2	22795	broad.mit.edu;mdanderson.org	37	14	52535526	52535526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NID2	NM_007361	exon1	c.A187T	p.N63Y	.	.	33	10	17	0	.	158
NIPA2	81614	bcgsc.ca	37	15	23006250	23006250	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NIPA2	NM_001184889	exon10	c.C1054A	p.R352R	.	.	108	5	44	0	.	91
NIPSNAP3A	25934	bcgsc.ca	37	9	107515214	107515214	+	Missense_Mutation	SNP	G	G	A	rs2274870	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NIPSNAP3A	NM_015469	exon3	c.G299A	p.R100Q	.	.	308	8	112	0	G|0.331;A|0.669	90
NKTR	4820	bcgsc.ca	37	3	42675093	42675093	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NKTR	NM_005385	exon10	c.C795T	p.T265T	.	.	96	5	47	0	.	93
NOC2L	26155	bcgsc.ca	37	1	892288	892288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NOC2L	NM_015658	exon4	c.A472G	p.K158E	.	.	71	5	62	0	.	92
NOTCH1	4851	ucsc.edu	37	9	139410452	139410452	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NOTCH1	NM_017617	exon10	c.C1650T	p.Y550Y	.	.	32	4	11	0	.	5459
NOX4	50507	bcgsc.ca	37	11	89133230	89133230	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NOX4	NM_001143836	exon11	c.T1029C	p.C343C	.	.	195	8	95	0	.	515
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101554302	101554302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NPAS2	NM_002518	exon5	c.361delC	p.P121fs	.	.	222	97	72	0	.	94
NPHS2	7827	bcgsc.ca	37	1	179533915	179533915	+	Silent	SNP	G	G	A	rs3738423	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NPHS2	NM_014625	exon2	c.C288T	p.S96S	.	.	182	6	63	0	G|0.920;A|0.080	90
NPLOC4	55666	bcgsc.ca	37	17	79596811	79596811	+	Silent	SNP	C	C	T	rs9894429	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NPLOC4	NM_017921	exon2	c.G36A	p.P12P	.	.	875	20	126	0	C|0.375;T|0.625	24
NRBP2	340371	ucsc.edu	37	8	144921111	144921111	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NRBP2	NM_178564	exon10	c.689-1G>T	.	.	.	48	4	17	0	.	354
NSRP1	84081	bcgsc.ca	37	17	28512271	28512271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NSRP1	NM_032141	exon7	c.A1256G	p.E419G	.	.	245	7	111	0	.	91
NUP160	23279	hgsc.bcm.edu	37	11	47857265	47857266	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NUP160	NM_015231	exon7	c.1039_1040insT	p.A347fs	.	.	389	22	76	0	.	209
OBSCN	84033	bcgsc.ca	37	1	228475848	228475848	+	Missense_Mutation	SNP	G	G	A	rs437129	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OBSCN	NM_001271223	exon42	c.G11185A	p.A3729T	.	.	168	8	64	0	G|0.692;A|0.308	403
OCRL	4952	bcgsc.ca	37	X	128674732	128674732	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OCRL	NM_000276	exon2	c.T51C	p.G17G	.	.	149	7	58	1	.	206
ODC1	4953	bcgsc.ca	37	2	10583629	10583629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ODC1	NM_002539	exon7	c.T653C	p.V218A	.	.	74	4	37	0	.	69
OLFML2B	25903	broad.mit.edu	37	1	161953623	161953623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OLFML2B	NM_015441	exon8	c.G2095A	p.A699T	.	.	924	21	142	0	.	69
OPHN1	4983	bcgsc.ca	37	X	67430012	67430012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OPHN1	NM_002547	exon9	c.T815C	p.L272P	.	.	218	6	89	0	.	110
OR10A5	144124	hgsc.bcm.edu;mdanderson.org	37	11	6867462	6867462	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR10A5	NM_178168	exon1	c.G549A	p.P183P	.	.	433	30	105	0	.	71
OR10G2	26534	ucsc.edu	37	14	22102592	22102592	+	Missense_Mutation	SNP	T	T	C	rs10138694	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR10G2	NM_001005466	exon1	c.A407G	p.H136R	.	.	163	35	39	1	T|0.629;C|0.371	69
OR10G2	26534	ucsc.edu	37	14	22102612	22102612	+	Silent	SNP	T	T	C	rs10138704	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR10G2	NM_001005466	exon1	c.A387G	p.L129L	.	.	154	38	36	0	T|0.628;C|0.372	69
OR10R2	343406	broad.mit.edu;mdanderson.org	37	1	158450632	158450632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR10R2	NM_001004472	exon1	c.G965T	p.R322I	.	.	100	24	48	0	.	161
OR11H12	440153	bcgsc.ca	37	14	19378036	19378036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR11H12	NM_001013354	exon1	c.C443T	p.P148L	.	.	2236	114	189	2	.	24
OR1L4	254973	hgsc.bcm.edu	37	9	125487015	125487039	+	Frame_Shift_Del	DEL	GGTCCTGTTCTATGGGAGTGTCATC	GGTCCTGTTCTATGGGAGTGTCATC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GGTCCTGTTCTATGGGAGTGTCATC	GGTCCTGTTCTATGGGAGTGTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR1L4	NM_001005235	exon1	c.747_771del	p.249_257del	.	.	433	0	141	0	.	68
OR1S1	219959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57983007	57983007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR1S1	NM_001004458	exon1	c.T791A	p.F264Y	.	.	255	112	91	1	.	113
OR2AG2	338755	broad.mit.edu;bcgsc.ca	37	11	6790153	6790153	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR2AG2	NM_001004490	exon1	c.C36T	p.F12F	.	.	155	7	53	0	.	71
OR2L3	391192	ucsc.edu	37	1	248224489	248224489	+	Missense_Mutation	SNP	A	A	G	rs56834114	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR2L3	NM_001004687	exon1	c.A506G	p.Q169R	.	.	160	119	105	3	A|0.720;G|0.280	68
OR2L8	391190	mdanderson.org	37	1	248112546	248112546	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR2L8	NM_001001963	exon1	c.C387T	p.L129L	.	.	401	70	121	1	.	70
OR2T27	403239	ucsc.edu	37	1	248813827	248813827	+	Missense_Mutation	SNP	T	T	C	rs61834488	bycluster;byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR2T27	NM_001001824	exon1	c.A359G	p.Y120C	.	.	154	129	89	46	T|0.333;C|0.667	47
OR4C3	256144	bcgsc.ca	37	11	48346513	48346513	+	Silent	SNP	T	T	C	rs78206553	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4C3	NM_001004702	exon1	c.T21C	p.L7L	.	.	382	28	127	1	T|0.914;C|0.086	69
OR4C45	403257	bcgsc.ca	37	11	48367133	48367133	+	RNA	SNP	C	C	A	rs79453749	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	100	27	38	1	C|0.583;A|0.417	.
OR4C45	403257	bcgsc.ca	37	11	48367136	48367136	+	RNA	SNP	C	C	T	rs78927905	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	98	27	37	1	C|0.571;T|0.429	.
OR4K1	79544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20404418	20404418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4K1	NM_001004063	exon1	c.T593G	p.M198R	.	.	284	74	132	0	.	71
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20344661	20344661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4K2	NM_001005501	exon1	c.C235A	p.P79T	.	.	413	119	124	0	.	72
OR4N3P	390539	ucsc.edu	37	15	22413700	22413700	+	RNA	SNP	A	A	G	rs76957661	bycluster;byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	547	366	160	92	A|0.625;G|0.375	.
OR52I2	143502	ucsc.edu	37	11	4608262	4608262	+	Missense_Mutation	SNP	A	A	C	rs79116379		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR52I2	NM_001005170	exon1	c.A220C	p.I74L	.	.	734	376	156	72	A|0.500;C|0.500	91
OR52R1	119695	bcgsc.ca	37	11	4825722	4825722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR52R1	.	.	.	.	.	.	112	9	65	1	.	69
OR5H2	79310	bcgsc.ca	37	3	98002419	98002419	+	Missense_Mutation	SNP	A	A	G	rs16839214	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR5H2	NM_001005482	exon1	c.A688G	p.I230V	.	.	363	9	133	0	A|0.855;G|0.145	71
OR6C74	254783	bcgsc.ca	37	12	55641367	55641367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR6C74	NM_001005490	exon1	c.T296C	p.L99P	.	.	191	6	86	0	.	68
OR7A10	390892	bcgsc.ca	37	19	14952539	14952539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR7A10	NM_001005190	exon1	c.T151C	p.S51P	.	.	88	4	57	0	.	68
OR7D4	125958	ucsc.edu	37	19	9324820	9324820	+	Missense_Mutation	SNP	T	T	C	rs145364350		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR7D4	NM_001005191	exon1	c.A694G	p.K232E	.	.	95	21	57	11	T|0.999;C|0.001	71
OR8G2	26492	ucsc.edu	37	11	124096195	124096195	+	Silent	SNP	G	G	A	rs7946214	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001007249	exon1	c.G798A	p.G266G	.	.	379	111	101	21	G|0.648;A|0.352	.
ORC5	5001	bcgsc.ca	37	7	103777231	103777231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ORC5	NM_002553	exon13	c.C1259A	p.A420E	.	.	74	4	33	0	.	206
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125295107	125295107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OSBPL11	NM_022776	exon5	c.G592T	p.V198F	.	.	196	74	84	0	.	135
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80761993	80761993	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_173591	exon54	c.A6492G	p.V2164V	.	.	207	74	90	0	.	.
OXER1	165140	hgsc.bcm.edu	37	2	42990341	42990342	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OXER1	NM_148962	exon1	c.979_980insC	p.C327fs	.	.	122	10	34	0	.	500
P2RX5	5026	bcgsc.ca	37	17	3592012	3592012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	P2RX5	NM_002561	exon8	c.T795C	p.L265L	.	.	81	4	60	0	.	22
PAK2	5062	bcgsc.ca	37	3	196534718	196534718	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PAK2	NM_002577	exon7	c.T642C	p.A214A	.	.	258	7	87	0	.	957
PARM1	25849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75971384	75971384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PARM1	NM_015393	exon4	c.A860G	p.Y287C	.	.	219	83	89	1	.	1
PARS2	25973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55223846	55223846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PARS2	NM_152268	exon2	c.G989A	p.G330D	.	.	165	66	54	0	.	92
PARVA	55742	bcgsc.ca	37	11	12525925	12525925	+	Silent	SNP	C	C	T	rs11547363	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PARVA	NM_018222	exon6	c.C726T	p.R242R	.	.	337	8	108	0	C|0.846;T|0.154	93
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164768965	164768965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PBX1	NM_001204963	exon4	c.G540T	p.M180I	.	.	211	68	56	0	.	659
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140580796	140580796	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PCDHB11	NM_018931	exon1	c.C1449T	p.N483N	.	.	171	65	64	0	.	96
PCNA	5111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5096123	5096123	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PCNA	NM_002592	exon6	c.A678G	p.T226T	.	.	239	104	93	0	.	651
PDCD7	10081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65426109	65426109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDCD7	NM_005707	exon1	c.C11T	p.P4L	.	.	71	29	26	0	.	227
PDE4A	5141	bcgsc.ca	37	19	10572564	10572564	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDE4A	NM_001111307	exon13	c.G1632T	p.T544T	.	.	58	4	27	0	.	523
PDE4D	5144	bcgsc.ca	37	5	58271533	58271533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDE4D	NM_001104631	exon14	c.A1964G	p.E655G	.	.	217	6	84	0	.	226
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144852472	144852472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDE4DIP	NM_014644	exon44	c.A7027G	p.T2343A	.	.	180	36	63	0	.	663
PDE4DIP	9659	ucsc.edu	37	1	144855866	144855866	+	Silent	SNP	A	A	G	rs72473741		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDE4DIP	NM_014644	exon41	c.T6687C	p.G2229G	.	.	117	25	39	5	.	663
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103870889	103870889	+	Silent	SNP	G	G	A	rs200239592	alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDGFD	NM_025208	exon2	c.C219T	p.Y73Y	.	.	423	163	113	0	G|0.999;C|0.000	723
PDP2	57546	bcgsc.ca	37	16	66919142	66919142	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDP2	NM_020786	exon2	c.C955A	p.R319R	.	.	69	4	35	0	.	91
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70190496	70190496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDPR	NM_017990	exon19	c.G2354T	p.W785L	.	.	177	24	65	0	.	135
PDPR	55066	ucsc.edu	37	16	70161263	70161263	+	Missense_Mutation	SNP	T	T	C	rs2549532	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDPR	NM_017990	exon4	c.T328C	p.Y110H	.	.	562	300	126	53	T|0.563;C|0.437	135
PDSS2	57107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	107475922	107475922	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDSS2	NM_020381	exon8	c.C1101G	p.Y367X	.	.	122	53	51	0	.	92
PEG10	23089	bcgsc.ca	37	7	94292919	94292919	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PEG10	NM_001172438	exon2	c.A279G	p.R93R	.	.	206	6	69	0	.	23
PHF7	51533	bcgsc.ca	37	3	52448023	52448023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PHF7	NM_016483	exon3	c.A53G	p.K18R	.	.	90	4	40	0	.	153
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79688429	79688429	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PHIP	NM_017934	exon25	c.2770-1G>T	.	.	.	151	61	61	0	.	579
PIGG	54872	bcgsc.ca	37	4	509768	509768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PIGG	NM_017733	exon6	c.T908C	p.I303T	.	.	177	6	67	1	.	92
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204408086	204408086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PIK3C2B	NM_002646	exon24	c.C3493G	p.P1165A	.	.	111	22	43	0	.	1310
PIK3R3	8503	bcgsc.ca	37	1	46509383	46509383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PIK3R3	NM_001114172	exon11	c.T1348C	p.Y450H	.	.	135	6	68	1	.	1309
PIPSL	266971	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95719360	95719360	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	273	119	101	0	.	.
PITPNM3	83394	bcgsc.ca	37	17	6380353	6380353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PITPNM3	NM_031220	exon9	c.T1081C	p.S361P	.	.	106	6	53	0	.	228
PIWIL1	9271	bcgsc.ca	37	12	130832672	130832672	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PIWIL1	NM_004764	exon7	c.A678G	p.Q226Q	.	.	131	6	64	0	.	92
PKD1	5310	ucsc.edu	37	16	2159119	2159119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PKD1	NM_000296	exon15	c.T6049C	p.S2017P	.	.	39	4	20	0	.	91
PKDREJ	10343	bcgsc.ca	37	22	46654323	46654323	+	Silent	SNP	G	G	A	rs6007740	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PKDREJ	NM_006071	exon1	c.C4897T	p.L1633L	.	.	140	5	93	0	G|0.736;A|0.264	156
PLA2G7	7941	broad.mit.edu;bcgsc.ca	37	6	46672428	46672428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLA2G7	NM_005084	exon12	c.C1195G	p.H399D	.	.	301	8	86	0	.	90
PLAA	9373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	26923264	26923264	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLAA	NM_001031689	exon7	c.G951T	p.L317L	.	.	343	122	111	0	.	514
PLAC4	191585	hgsc.bcm.edu	37	21	42551311	42551311	+	Missense_Mutation	SNP	A	A	G	rs201045863		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_182832	exon1	c.T245C	p.I82T	.	.	395	36	123	0	.	.
PLCXD3	345557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41381972	41381972	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLCXD3	NM_001005473	exon2	c.G768A	p.V256V	.	.	291	162	72	0	.	229
PLD2	5338	bcgsc.ca	37	17	4721335	4721335	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLD2	NM_001243108	exon18	c.G1854A	p.L618L	.	.	64	4	53	0	.	291
PLEKHA6	22874	bcgsc.ca	37	1	204228712	204228712	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLEKHA6	NM_014935	exon8	c.A681G	p.E227E	.	.	133	8	37	0	.	654
PLEKHM1P	440456	ucsc.edu	37	17	62796759	62796759	+	RNA	SNP	A	A	C	rs2074182	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	132	55	27	5	A|0.782;C|0.218	.
PLOD2	5352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	145828234	145828234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLOD2	NM_182943	exon4	c.T340C	p.F114L	.	.	109	47	61	0	.	92
PLSCR1	5359	hgsc.bcm.edu	37	3	146246480	146246494	+	In_Frame_Del	DEL	ACTGGCTGATTATAT	ACTGGCTGATTATAT	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	ACTGGCTGATTATAT	ACTGGCTGATTATAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLSCR1	NM_021105	exon4	c.219_233del	p.73_78del	.	.	132	25	49	0	.	92
PLXNA1	5361	bcgsc.ca	37	3	126708488	126708488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLXNA1	NM_032242	exon1	c.C1052T	p.P351L	.	.	111	5	46	0	.	93
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131883315	131883315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLXNA4	NM_020911	exon13	c.C2667A	p.D889E	.	.	41	9	23	0	.	91
PLXNC1	10154	hgsc.bcm.edu	37	12	94542869	94542869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLXNC1	NM_005761	exon1	c.G122T	p.R41L	.	.	18	10	0	0	.	92
PNN	5411	bcgsc.ca	37	14	39646881	39646881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PNN	NM_002687	exon5	c.G412A	p.G138R	.	.	78	4	50	0	.	91
POC5	134359	bcgsc.ca	37	5	74988236	74988236	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POC5	NM_001099271	exon7	c.C780A	p.V260V	.	.	277	8	84	0	.	45
POLN	353497	bcgsc.ca	37	4	2200433	2200433	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POLN	NM_181808	exon4	c.T726C	p.S242S	.	.	68	4	38	0	.	539
POLR3A	11128	bcgsc.ca	37	10	79778944	79778944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POLR3A	NM_007055	exon9	c.A1265G	p.Q422R	.	.	155	5	71	0	.	90
POM121	9883	ucsc.edu	37	7	72413581	72413581	+	Missense_Mutation	SNP	G	G	A	rs71554687	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POM121	NM_172020	exon11	c.G2254A	p.V752I	.	.	303	59	93	13	G|0.924;A|0.076	226
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	77751296	77751296	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POMT2	NM_013382	exon14	c.A1573T	p.K525X	.	.	126	50	52	0	.	91
PON1	5444	bcgsc.ca	37	7	94931540	94931540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PON1	NM_000446	exon8	c.T886C	p.S296P	.	.	80	4	42	1	.	91
POSTN	10631	bcgsc.ca	37	13	38160298	38160298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POSTN	NM_006475	exon7	c.G873A	p.M291I	.	.	110	8	42	0	.	516
PPA2	27068	bcgsc.ca	37	4	106317429	106317429	+	Missense_Mutation	SNP	C	C	G	rs13787	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PPA2	NM_176869	exon9	c.G846C	p.K282N	.	.	264	8	129	0	C|0.611;G|0.389	91
PPIAL4G	644591	ucsc.edu	37	1	143767643	143767643	+	Missense_Mutation	SNP	T	T	C	rs78862507	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001123068	exon1	c.A206G	p.H69R	.	.	417	146	65	0	T|0.667;C|0.333	.
PPIP5K2	23262	bcgsc.ca	37	5	102537285	102537285	+	Missense_Mutation	SNP	A	A	G	rs36046591	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PPIP5K2	NM_001276277	exon31	c.A3682G	p.S1228G	.	.	648	13	156	0	A|0.969;G|0.031	92
PPP1R32	220004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	61249803	61249803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001170753	exon3	c.C130T	p.R44C	.	.	71	22	31	0	.	.
PPWD1	23398	bcgsc.ca	37	5	64881936	64881936	+	Silent	SNP	A	A	G	rs27141	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PPWD1	NM_015342	exon10	c.A1725G	p.P575P	.	.	211	8	68	0	A|0.396;G|0.604	91
PRAMEF1	65121	ucsc.edu	37	1	12854356	12854356	+	Missense_Mutation	SNP	T	T	C	rs80079739	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PRAMEF1	NM_023013	exon3	c.T580C	p.Y194H	.	.	1048	389	178	42	T|0.500;C|0.500	22
PRDM1	639	bcgsc.ca	37	6	106554321	106554321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PRDM1	NM_001198	exon6	c.C1849A	p.H617N	.	.	63	4	30	0	.	862
PRDM4	11108	bcgsc.ca	37	12	108145578	108145578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PRDM4	NM_012406	exon5	c.A740G	p.D247G	.	.	90	5	46	0	.	154
PREB	10113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27355507	27355507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PREB	NM_013388	exon5	c.C716T	p.T239I	.	.	191	61	62	0	.	91
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47269916	47269916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PREX1	NM_020820	exon20	c.C2329T	p.R777W	.	.	55	27	22	0	.	231
PRH2	5555	ucsc.edu	37	12	11083356	11083356	+	Missense_Mutation	SNP	A	A	G	rs116998526	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PRH2	NM_001110213	exon3	c.A196G	p.N66D	.	.	530	166	114	23	A|0.989;G|0.011	90
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48839799	48839799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PRKDC	.	.	.	.	.	.	139	59	58	0	.	1515
PRRG4	79056	bcgsc.ca	37	11	32852172	32852172	+	Missense_Mutation	SNP	G	G	A	rs33962176	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PRRG4	NM_024081	exon2	c.G97A	p.E33K	.	.	83	5	36	0	G|0.902;A|0.098	90
PSG9	5678	bcgsc.ca	37	19	43763042	43763042	+	Missense_Mutation	SNP	G	G	T	rs1058281	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PSG9	NM_002784	exon4	c.C955A	p.L319I	.	.	76	18	31	0	T|0.049;G|0.951	92
PTCD2	79810	bcgsc.ca	37	5	71630875	71630875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PTCD2	NM_024754	exon5	c.T499C	p.S167P	.	.	364	8	125	1	.	90
PTPN22	26191	bcgsc.ca	37	1	114380646	114380646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PTPN22	NM_015967	exon13	c.A1376G	p.E459G	.	.	106	5	51	0	.	227
PTPRB	5787	hgsc.bcm.edu	37	12	70954544	70954545	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PTPRB	NM_001109754	exon17	c.4339_4340insG	p.F1447fs	.	.	242	17	68	0	.	226
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70970186	70970186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PTPRB	NM_001109754	exon11	c.C2818A	p.H940N	.	.	234	81	88	0	.	226
PXDNL	137902	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	52321693	52321693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PXDNL	NM_144651	exon17	c.C2491T	p.P831S	.	.	67	35	25	1	.	70
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	QRICH2	NM_032134	exon4	c.A1802T	p.D601V	.	.	348	5	59	0	.	94
QSOX2	169714	bcgsc.ca	37	9	139113693	139113693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	QSOX2	NM_181701	exon6	c.T770C	p.V257A	.	.	68	4	40	0	.	91
RAB5C	5878	bcgsc.ca	37	17	40280740	40280740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RAB5C	NM_001252039	exon4	c.G344T	p.R115L	.	.	120	5	44	0	.	722
RALGDS	5900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135984101	135984101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RALGDS	NM_006266	exon5	c.C737T	p.A246V	.	.	50	32	33	0	.	722
RANBP2	5903	bcgsc.ca	37	2	109384234	109384234	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RANBP2	NM_006267	exon20	c.A7239G	p.E2413E	.	.	78	4	55	0	.	675
RASSF6	166824	bcgsc.ca	37	4	74442142	74442142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RASSF6	NM_201431	exon10	c.A1019G	p.Q340R	.	.	257	8	84	0	.	319
RB1CC1	9821	bcgsc.ca	37	8	53555115	53555115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RB1CC1	NM_001083617	exon18	c.T4133C	p.L1378S	.	.	158	5	73	0	.	170
RBKS	64080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28065967	28065967	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RBKS	NM_022128	exon5	c.T481C	p.L161L	.	.	151	44	56	0	.	92
RBM20	282996	broad.mit.edu	37	10	112572213	112572213	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001134363	exon9	c.A2058C	p.E686D	.	.	30	6	15	0	.	.
RFPL2	10739	ucsc.edu	37	22	32586875	32586875	+	Missense_Mutation	SNP	G	G	A	rs136468	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RFPL2	NM_001098527	exon5	c.C1021T	p.R341C	.	.	244	68	73	7	G|0.561;A|0.439	91
RFPL2	10739	ucsc.edu	37	22	32586878	32586878	+	Silent	SNP	A	A	G	rs136469	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RFPL2	NM_001098527	exon5	c.T1018C	p.L340L	.	.	245	70	75	7	A|0.589;G|0.411	91
RFX4	5992	bcgsc.ca	37	12	107075771	107075771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RFX4	NM_001206691	exon5	c.A343G	p.I115V	.	.	86	4	34	0	.	91
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182443063	182443063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RGSL1	NM_001137669	exon6	c.G817T	p.D273Y	.	.	200	67	66	0	.	226
RNF113A	7737	bcgsc.ca	37	X	119004614	119004614	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RNF113A	NM_006978	exon1	c.A963G	p.R321R	.	.	134	5	42	0	.	129
RNF220	55182	bcgsc.ca	37	1	45101769	45101769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RNF220	NM_018150	exon8	c.A1061G	p.E354G	.	.	150	7	54	0	.	228
RNR2	6053	broad.mit.edu	37	MT	2300	2300	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	306	297	74	0	.	.
RP1L1	94137	bcgsc.ca	37	8	10467636	10467636	+	Silent	SNP	T	T	C	rs4840500		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RP1L1	NM_178857	exon4	c.A3972G	p.E1324E	.	.	582	39	129	1	.	139
RP1L1	94137	bcgsc.ca	37	8	10467702	10467702	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RP1L1	NM_178857	exon4	c.A3906G	p.Q1302Q	.	.	319	119	80	0	.	139
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10467681	10467686	+	In_Frame_Del	DEL	TCCTTC	TCCTTC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	TCCTTC	TCCTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RP1L1	NM_178857	exon4	c.3922_3927del	p.1308_1309del	.	.	374	0	83	0	.	139
RPGRIP1L	23322	bcgsc.ca	37	16	53691502	53691502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPGRIP1L	NM_001127897	exon13	c.A1444G	p.K482E	.	.	124	5	67	0	.	91
RPS6KA1	6195	ucsc.edu;bcgsc.ca	37	1	26898357	26898357	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPS6KA1	NM_001006665	exon18	c.C1797T	p.G599G	.	.	44	4	27	0	.	510
RPS6KA2	6196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166944752	166944752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPS6KA2	NM_001006932	exon4	c.C290T	p.A97V	.	.	108	34	47	0	.	1405
RPS9	6203	bcgsc.ca	37	19	54705111	54705111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPS9	NM_001013	exon2	c.T59C	p.F20S	.	.	143	6	39	0	.	153
RSC1A1	6248	bcgsc.ca	37	1	15987087	15987087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RSC1A1	NM_006511	exon1	c.T724C	p.C242R	.	.	130	6	46	0	.	91
RSPH3	83861	bcgsc.ca	37	6	159403565	159403565	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RSPH3	NM_031924	exon5	c.T1074C	p.A358A	.	.	147	7	47	0	.	92
RTN1	6252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	60097163	60097163	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RTN1	NM_206852	exon2	c.61+1G>T	.	.	.	78	23	31	0	.	516
RTN1	6252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60074128	60074128	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RTN1	NM_021136	exon4	c.C1848A	p.T616T	.	.	78	33	18	0	.	516
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237580423	237580423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RYR2	NM_001035	exon11	c.C848T	p.A283V	.	.	177	68	57	0	.	158
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237972285	237972285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RYR2	NM_001035	exon100	c.A14383G	p.K4795E	.	.	308	133	101	0	.	158
SBNO1	55206	bcgsc.ca	37	12	123812307	123812307	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SBNO1	NM_001167856	exon11	c.T1485C	p.G495G	.	.	103	6	46	0	.	292
SCML1	6322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17768332	17768332	+	Missense_Mutation	SNP	G	G	T	rs199560760	alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SCML1	NM_001037540	exon6	c.G622T	p.G208W	.	.	173	58	77	0	G|1.000;A|0.000	290
SCN10A	6336	bcgsc.ca	37	3	38833600	38833600	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SCN10A	NM_006514	exon2	c.G330A	p.L110L	.	.	124	5	59	0	.	99
SDHAP1	255812	ucsc.edu	37	3	195690233	195690233	+	RNA	SNP	A	A	G	rs199975852		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	131	25	45	9	.	.
SEC22B	9554	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145109670	145109670	+	RNA	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	887	65	146	0	.	.
SELP	6403	bcgsc.ca	37	1	169580885	169580885	+	Missense_Mutation	SNP	C	C	T	rs6131	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SELP	NM_003005	exon7	c.G992A	p.S331N	.	.	235	6	47	0	C|0.778;T|0.221	94
SEMA3E	9723	bcgsc.ca	37	7	83037731	83037731	+	Missense_Mutation	SNP	C	C	G	rs61729612	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SEMA3E	NM_012431	exon6	c.G623C	p.R208P	.	.	211	7	76	0	C|0.877;G|0.123	93
SEMA6D	80031	bcgsc.ca	37	15	48058087	48058087	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SEMA6D	NM_153617	exon14	c.A1449G	p.E483E	.	.	195	6	80	0	.	138
SETDB1	9869	bcgsc.ca	37	1	150902472	150902472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SETDB1	NM_012432	exon3	c.A290G	p.K97R	.	.	207	6	62	0	.	228
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26706636	26706636	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SEZ6L	NM_021115	exon7	c.G1515A	p.R505R	.	.	102	36	44	0	.	95
SGCD	6444	bcgsc.ca	37	5	156022007	156022007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_000337	exon6	c.T448C	p.F150L	.	.	144	5	75	0	.	.
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	13965672	13965672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SGCZ	NM_139167	exon6	c.G620A	p.R207K	.	.	178	64	76	0	.	93
SHROOM3	57619	bcgsc.ca	37	4	77661235	77661235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SHROOM3	NM_020859	exon5	c.A1909G	p.N637D	.	.	45	4	30	0	.	93
SIGLEC16	400709	broad.mit.edu	37	19	50473221	50473221	+	RNA	SNP	T	T	C	rs440731	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	90	9	24	0	T|0.500;C|0.500	.
SIL1	64374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138287486	138287486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIL1	NM_001037633	exon9	c.A855G	p.A285A	.	.	64	22	17	0	.	90
SIRPA	140885	bcgsc.ca	37	20	1895984	1895984	+	Missense_Mutation	SNP	C	C	A	rs17855615	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIRPA	NM_001040022	exon3	c.C319A	p.R107S	.	.	651	40	151	0	C|0.700;A|0.300	227
SIRPA	140885	bcgsc.ca	37	20	1895990	1895990	+	Missense_Mutation	SNP	G	G	A	rs201545978		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIRPA	NM_001040022	exon3	c.G325A	p.G109S	.	.	623	37	149	0	.	227
SIRT4	23409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120741415	120741415	+	Silent	SNP	C	C	T	rs199859894		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIRT4	NM_012240	exon2	c.C51T	p.I17I	.	.	86	25	40	0	.	226
SLC14A1	6563	bcgsc.ca	37	18	43316538	43316538	+	Silent	SNP	A	A	G	rs2298718	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC14A1	NM_001146037	exon5	c.A756G	p.P252P	.	.	179	9	76	0	A|0.362;G|0.638	515
SLC25A5	292	bcgsc.ca	37	X	118603742	118603742	+	Missense_Mutation	SNP	A	A	C	rs148294496	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC25A5	NM_001152	exon2	c.A230C	p.N77T	.	.	163	14	59	3	A|0.990;C|0.010	131
SLC27A2	11001	broad.mit.edu;bcgsc.ca	37	15	50518239	50518239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC27A2	NM_003645	exon6	c.C1222T	p.R408C	.	.	197	8	75	0	.	92
SLC27A2	11001	hgsc.bcm.edu	37	15	50474665	50474666	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC27A2	NM_003645	exon1	c.41_42insC	p.F14fs	.	.	182	10	54	0	.	92
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	128368891	128368891	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC27A6	NM_001017372	exon10	c.C1776A	p.Y592X	.	.	422	160	123	0	.	90
SLC2A3	6515	ucsc.edu	37	12	8082367	8082367	+	Silent	SNP	T	T	C	rs17847967	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC2A3	NM_006931	exon6	c.A774G	p.L258L	.	.	410	122	93	0	T|0.846;C|0.154	94
SLC35G5	83650	ucsc.edu	37	8	11189535	11189535	+	Missense_Mutation	SNP	T	T	C	rs12681991	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_054028	exon1	c.T920C	p.L307P	.	.	258	127	54	17	T|0.557;C|0.443	.
SLCO1B3	28234	hgsc.bcm.edu	37	12	21028267	21028267	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLCO1B3	NM_019844	exon9	c.826delT	p.F276fs	.	.	531	9	140	2	.	155
SMC4	10051	bcgsc.ca	37	3	160131347	160131347	+	Missense_Mutation	SNP	A	A	G	rs33999879	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMC4	NM_005496	exon7	c.A1067G	p.N356S	.	.	326	9	146	0	A|0.954;G|0.046	291
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72879327	72879327	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMC5	NM_015110	exon2	c.C293G	p.A98G	.	.	331	155	92	0	.	229
SMR3A	26952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71232505	71232505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMR3A	NM_012390	exon3	c.C199A	p.L67I	.	.	307	119	105	0	.	90
SNTB1	6641	bcgsc.ca	37	8	121551150	121551150	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SNTB1	NM_021021	exon7	c.A1584G	p.S528S	.	.	159	6	51	0	.	228
SOGA1	140710	bcgsc.ca	37	20	35457559	35457559	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_080627	exon3	c.A969G	p.K323K	.	.	141	8	54	0	.	.
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	186533094	186533094	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SORBS2	NM_001270771	exon21	c.G3224A	p.W1075X	.	.	351	22	113	0	.	91
SPATA19	219938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133714431	133714431	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPATA19	NM_174927	exon3	c.C240A	p.G80G	.	.	219	91	78	0	.	90
SPATA22	84690	bcgsc.ca	37	17	3346547	3346547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPATA22	NM_032598	exon8	c.T821C	p.V274A	.	.	184	6	98	0	.	90
SPATA31D5P	347127	ucsc.edu	37	9	84531982	84531982	+	RNA	SNP	G	G	C	rs515389	bycluster;byfrequency;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	141	52	40	11	G|0.106;C|0.894	.
SPATA31D5P	347127	ucsc.edu	37	9	84531984	84531984	+	RNA	SNP	A	A	C	rs28602355	bycluster;byfrequency;by1000genomes	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	143	53	41	13	A|0.891;C|0.109	.
SPINK2	6691	bcgsc.ca	37	4	57677928	57677928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPINK2	NM_001271719	exon2	c.T242C	p.V81A	.	.	71	5	28	0	.	90
SPTY2D1	144108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18638422	18638422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPTY2D1	NM_194285	exon2	c.G175C	p.A59P	.	.	255	107	103	0	.	90
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30750324	30750324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SRCAP	NM_006662	exon34	c.C8963T	p.T2988I	.	.	91	35	40	0	.	94
SREK1	140890	bcgsc.ca	37	5	65473438	65473438	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SREK1	NM_001077199	exon11	c.T1677C	p.N559N	.	.	129	5	49	0	.	91
SRSF1	6426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56083127	56083127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SRSF1	NM_001078166	exon3	c.A587G	p.N196S	.	.	117	39	58	0	.	290
SSR2	6746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155988138	155988138	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SSR2	NM_003145	exon3	c.A177G	p.L59L	.	.	94	33	30	0	.	90
ST18	9705	hgsc.bcm.edu	37	8	53062482	53062482	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ST18	NM_014682	exon16	c.1862delA	p.N621fs	.	.	593	9	151	2	.	95
SUCO	51430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172557990	172557990	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_014283	exon18	c.G1749C	p.E583D	.	.	262	75	69	0	.	.
SUGP1	57794	bcgsc.ca	37	19	19420974	19420974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SUGP1	NM_172231	exon3	c.A242G	p.N81S	.	.	154	5	64	0	.	91
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53254291	53254291	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SUGT1	NM_001130912	exon13	c.996+1G>T	.	.	.	142	44	76	0	.	226
SULT1A1	6817	ucsc.edu	37	16	28617514	28617514	+	Missense_Mutation	SNP	C	C	T	rs9282861	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SULT1A1	NM_177534	exon6	c.G638A	p.R213H	.	.	202	76	57	16	C|0.776;T|0.224	90
SULT1A2	6799	ucsc.edu	37	16	28607228	28607228	+	Silent	SNP	A	A	G	rs1690407		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SULT1A2	NM_001054	exon2	c.T24C	p.S8S	.	.	101	27	25	1	A|0.992;G|0.008	90
SUOX	6821	bcgsc.ca	37	12	56396412	56396412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SUOX	NM_000456	exon5	c.T136C	p.S46P	.	.	192	6	68	0	.	90
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123846536	123846536	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TACC2	NM_206862	exon4	c.G4521T	p.R1507R	.	.	53	17	27	0	.	296
TACC2	10579	ucsc.edu	37	10	123903198	123903198	+	Silent	SNP	A	A	G	rs150954247		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TACC2	NM_206862	exon7	c.A5811G	p.P1937P	.	.	57	5	15	0	A|1.000;G|0.000	296
TARBP1	6894	bcgsc.ca	37	1	234596087	234596087	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TARBP1	NM_005646	exon7	c.T1455C	p.V485V	.	.	227	8	97	0	.	93
TBC1D17	79735	bcgsc.ca	37	19	50386303	50386303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TBC1D17	NM_024682	exon9	c.A1001G	p.E334G	.	.	53	4	39	0	.	90
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	76055603	76055603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TBC1D4	NM_014832	exon1	c.G301A	p.A101T	.	.	80	39	26	0	.	95
TBC1D5	9779	bcgsc.ca	37	3	17255768	17255768	+	Silent	SNP	T	T	C	rs116772060	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TBC1D5	NM_001134381	exon20	c.A1749G	p.K583K	.	.	131	5	62	0	T|0.974;C|0.026	91
TCEAL3	85012	bcgsc.ca	37	X	102864442	102864442	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCEAL3	NM_001006933	exon3	c.A450G	p.Q150Q	.	.	1954	479	195	9	.	90
TCEAL3	85012	mdanderson.org	37	X	102864334	102864334	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCEAL3	NM_001006933	exon3	c.G342A	p.T114T	.	.	591	56	153	1	.	90
TCEB3B	51224	ucsc.edu;bcgsc.ca	37	18	44561516	44561516	+	Silent	SNP	C	C	G	rs61733488	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCEB3B	NM_016427	exon1	c.G120C	p.T40T	.	.	266	65	79	5	C|0.467;G|0.533	156
TCF25	22980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89960138	89960138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCF25	NM_014972	exon7	c.C700G	p.L234V	.	.	153	42	30	0	.	90
TCHH	7062	bcgsc.ca	37	1	152083665	152083665	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCHH	NM_007113	exon3	c.T2028G	p.H676Q	.	.	422	34	77	0	.	72
TCHH	7062	bcgsc.ca	37	1	152083818	152083820	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCHH	NM_007113	exon3	c.1873_1875del	p.625_625del	.	.	421	93	89	0	.	72
TCP10	6953	ucsc.edu	37	6	167791530	167791530	+	Missense_Mutation	SNP	G	G	C	rs56018421	bycluster	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCP10	NM_004610	exon4	c.C330G	p.D110E	.	.	418	107	116	20	C|1.000;|0.000	89
TDO2	6999	bcgsc.ca	37	4	156832715	156832715	+	Missense_Mutation	SNP	A	A	C	rs116105292	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TDO2	NM_005651	exon7	c.A685C	p.N229H	.	.	293	9	119	1	A|0.967;C|0.033	514
TECTB	6975	bcgsc.ca	37	10	114053565	114053565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TECTB	NM_058222	exon5	c.T553C	p.F185L	.	.	156	6	86	0	.	90
TECTB	6975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114046139	114046139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TECTB	NM_058222	exon4	c.A473G	p.N158S	.	.	142	55	66	0	.	90
TEKT4	150483	ucsc.edu	37	2	95542476	95542476	+	Missense_Mutation	SNP	C	C	T	rs1052809	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TEKT4	NM_144705	exon6	c.C1270T	p.R424C	.	.	41	4	13	0	C|0.985;T|0.015	155
TENM2	57451	bcgsc.ca	37	5	167653141	167653141	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001122679	exon24	c.G5130A	p.V1710V	.	.	81	5	37	0	.	.
TET2	54790	ucsc.edu	37	4	106158351	106158351	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TET2	NM_001127208	exon3	c.A3252T	p.Q1084H	.	.	42	4	41	0	.	4618
TEX35	84066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	178489807	178489807	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001170724	exon7	c.342-1G>C	.	.	.	105	22	38	0	.	.
TFEC	22797	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	115624439	115624439	+	Silent	SNP	C	C	A	rs34738022	byfrequency;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TFEC	NM_001018058	exon2	c.G57T	p.V19V	.	.	393	158	127	0	C|0.983;T|0.017	153
TG	7038	bcgsc.ca	37	8	133906008	133906008	+	Silent	SNP	T	T	C	rs140945750	alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TG	NM_003235	exon11	c.T2835C	p.A945A	.	.	205	8	93	0	T|1.000;A|0.000	145
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	89177576	89177576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TGIF2LX	NM_138960	exon2	c.G492T	p.K164N	.	.	165	65	68	0	.	92
THOC1	9984	bcgsc.ca	37	18	246425	246425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	THOC1	NM_005131	exon11	c.A817G	p.S273G	.	.	202	6	134	0	.	91
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	11464348	11464348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	THSD7A	NM_015204	exon15	c.G3358C	p.E1120Q	.	.	153	14	57	0	.	71
TIAM2	26230	bcgsc.ca	37	6	155469439	155469439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TIAM2	NM_012454	exon6	c.C1999T	p.P667S	.	.	115	5	34	0	.	93
TJP3	27134	bcgsc.ca	37	19	3738649	3738649	+	Silent	SNP	A	A	C	rs599587	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TJP3	NM_001267561	exon12	c.A1408C	p.R470R	.	.	118	7	48	0	A|0.306;C|0.694	92
TLE1	7088	bcgsc.ca	37	9	84208151	84208151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TLE1	NM_005077	exon15	c.A1370G	p.Q457R	.	.	120	5	54	0	.	92
TLE6	79816	bcgsc.ca	37	19	2987030	2987030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TLE6	NM_001143986	exon7	c.A335G	p.D112G	.	.	64	4	33	0	.	91
TLL2	7093	bcgsc.ca	37	10	98136452	98136452	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TLL2	NM_012465	exon18	c.A2445G	p.K815K	.	.	101	6	39	0	.	93
TMCC3	57458	bcgsc.ca	37	12	94976159	94976159	+	Silent	SNP	T	T	C	rs3747551	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TMCC3	NM_020698	exon2	c.A234G	p.V78V	.	.	124	5	72	0	T|0.673;C|0.327	92
TMEM192	201931	bcgsc.ca	37	4	166021811	166021811	+	Silent	SNP	G	G	C	rs6536890	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TMEM192	NM_001100389	exon3	c.C408G	p.L136L	.	.	248	10	86	0	G|0.671;C|0.329	69
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001145051	exon2	c.C382G	p.Q128E	.	.	107	13	29	0	G|1.000;|0.000	.
TMEM25	84866	hgsc.bcm.edu	37	11	118402848	118402979	+	Frame_Shift_Del	DEL	CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG	CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG	CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TMEM25	NM_001144038	exon3	c.71_185del	p.24_62del	.	.	19	0	10	0	.	90
TMEM60	85025	bcgsc.ca	37	7	77423420	77423420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TMEM60	NM_032936	exon2	c.T271C	p.C91R	.	.	83	4	61	0	.	90
TMPRSS15	5651	bcgsc.ca	37	21	19670136	19670136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TMPRSS15	NM_002772	exon19	c.T2176C	p.S726P	.	.	67	4	32	0	.	160
TMTC2	160335	hgsc.bcm.edu	37	12	83250884	83250885	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TMTC2	NM_152588	exon2	c.179_180insC	p.G60fs	.	.	214	13	62	0	.	92
TNPO1	3842	bcgsc.ca	37	5	72151732	72151732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TNPO1	NM_002270	exon4	c.C337A	p.L113M	.	.	133	5	61	0	.	228
TOP2B	7155	bcgsc.ca	37	3	25668153	25668153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TOP2B	NM_001068	exon18	c.G2107A	p.G703S	.	.	112	6	72	0	.	273
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578554	7578554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	TP53,NS,carcinoma,+2	TP53	NM_000546	exon5	c.T376G	p.Y126D	.	.	21	14	17	0	.	70225
TPK1	27010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	144150707	144150707	+	Silent	SNP	G	G	A	rs113536847	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TPK1	NM_022445	exon9	c.C663T	p.Y221Y	.	.	111	47	50	0	G|0.998;A|0.002	188
TRIM32	22954	bcgsc.ca	37	9	119460065	119460065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRIM32	NM_012210	exon2	c.G44T	p.R15L	.	.	78	5	40	0	.	650
TRIM49	57093	bcgsc.ca	37	11	89531540	89531540	+	Missense_Mutation	SNP	C	C	T	rs12417980	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRIM49	NM_020358	exon8	c.G1117A	p.G373R	.	.	555	14	147	1	C|0.707;T|0.293	84
TRIOBP	11078	hgsc.bcm.edu	37	22	38119757	38119757	+	Missense_Mutation	SNP	A	A	T	rs199535040		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRIOBP	NM_001039141	exon7	c.A1194T	p.Q398H	.	.	175	9	61	0	.	136
TRMU	55687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46751486	46751486	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRMU	NM_018006	exon9	c.1018+1G>A	.	.	.	53	39	27	0	.	23
TRNT1	51095	bcgsc.ca	37	3	3189293	3189293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRNT1	NM_182916	exon7	c.A962G	p.N321S	.	.	228	6	87	0	.	90
TSNARE1	203062	ucsc.edu	37	8	143436046	143436046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TSNARE1	NM_145003	exon2	c.A40G	p.S14G	.	.	53	6	27	1	.	90
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	180325533	180325533	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTC14	NM_001042601	exon10	c.1270delA	p.K424fs	.	.	241	102	99	0	.	91
TTC9C	283237	bcgsc.ca	37	11	62496519	62496519	+	Silent	SNP	T	T	C	rs584845	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTC9C	NM_173810	exon1	c.T199C	p.L67L	.	.	126	5	65	0	T|0.690;C|0.310	92
TTLL12	23170	ucsc.edu	37	22	43575694	43575694	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTLL12	NM_015140	exon5	c.G771A	p.L257L	.	.	43	4	29	0	.	90
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179475909	179475909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTN	NM_001267550	exon270	c.G50947C	p.V16983L	.	.	151	77	64	0	.	636
TUBA8	51807	bcgsc.ca	37	22	18607016	18607016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TUBA8	NM_018943	exon3	c.A320G	p.H107R	.	.	134	6	55	0	.	90
TUBGCP2	10844	bcgsc.ca	37	10	135097415	135097415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TUBGCP2	NM_001256617	exon15	c.T2200C	p.W734R	.	.	134	6	74	0	.	90
UBN1	29855	bcgsc.ca	37	16	4910761	4910761	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UBN1	NM_001079514	exon7	c.A768G	p.K256K	.	.	100	5	40	0	.	92
UGT2A3	79799	bcgsc.ca	37	4	69817080	69817080	+	Silent	SNP	C	C	T	rs3749510	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UGT2A3	NM_024743	exon1	c.G399A	p.T133T	.	.	288	8	126	0	C|0.787;T|0.213	92
UMODL1	89766	bcgsc.ca	37	21	43547218	43547218	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UMODL1	NM_173568	exon18	c.T3780C	p.S1260S	.	.	189	6	70	0	.	93
UNC13A	23025	bcgsc.ca	37	19	17756635	17756635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNC13A	NM_001080421	exon18	c.C2204A	p.S735Y	.	.	76	4	50	0	.	25
UNC13B	10497	bcgsc.ca	37	9	35403751	35403751	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNC13B	NM_006377	exon39	c.G4497A	p.L1499L	.	.	116	5	57	0	.	157
UNC13B	10497	hgsc.bcm.edu	37	9	35382500	35382500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNC13B	NM_006377	exon20	c.T2555G	p.F852C	.	.	234	26	73	0	.	157
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73836847	73836847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNC13D	NM_199242	exon8	c.C679A	p.R227S	.	.	251	68	53	0	.	92
UNC79	57578	bcgsc.ca	37	14	94048555	94048555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_020818	exon20	c.A2137G	p.T713A	.	.	50	4	27	0	.	.
UNC79	57578	bcgsc.ca	37	14	94088888	94088888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_020818	exon30	c.A4778G	p.E1593G	.	.	128	6	39	0	.	.
UNKL	64718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	1420138	1420138	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNKL	NM_001193388	exon12	c.C1578T	p.S526S	.	.	33	13	11	0	.	90
UPP1	7378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48147819	48147819	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UPP1	NM_003364	exon9	c.C798T	p.A266A	.	.	58	27	20	0	.	514
USP28	57646	bcgsc.ca	37	11	113704971	113704971	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	USP28	NM_020886	exon6	c.A621G	p.T207T	.	.	87	4	48	0	.	706
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22016544	22016544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	USP48	NM_032236	exon24	c.G2932A	p.D978N	.	.	301	107	96	0	.	659
VASN	114990	ucsc.edu	37	16	4431088	4431088	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VASN	NM_138440	exon2	c.C210T	p.G70G	.	.	40	4	21	0	.	68
VEZF1	7716	bcgsc.ca	37	17	56056607	56056607	+	Silent	SNP	C	C	T	rs73995411	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VEZF1	NM_007146	exon5	c.G1044A	p.Q348Q	.	.	225	8	63	3	C|0.969;T|0.031	136
VGLL1	51442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	135618180	135618180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VGLL1	NM_016267	exon2	c.A1G	p.M1V	.	.	46	23	32	0	.	130
VGLL2	245806	hgsc.bcm.edu	37	6	117589420	117589421	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VGLL2	NM_182645	exon2	c.157_158insC	p.S53fs	.	.	119	10	34	0	.	90
VN1R2	317701	bcgsc.ca	37	19	53762537	53762537	+	Silent	SNP	C	C	T	rs12609049	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VN1R2	NM_173856	exon1	c.C909T	p.L303L	.	.	250	10	94	0	C|0.903;T|0.097	90
VRK1	7443	bcgsc.ca	37	14	97327061	97327061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VRK1	NM_003384	exon11	c.A1057G	p.T353A	.	.	251	7	85	0	.	358
VRTN	55237	hgsc.bcm.edu;broad.mit.edu	37	14	74824462	74824463	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VRTN	NM_018228	exon2	c.976_977insG	p.R326fs	.	.	25	9	20	0	.	155
VWA5B1	127731	hgsc.bcm.edu	37	1	20671955	20671956	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001039500	exon17	c.2633_2634insC	p.N878fs	.	.	140	10	49	0	.	.
WDR16	146845	bcgsc.ca	37	17	9497537	9497537	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WDR16	NM_145054	exon4	c.A435G	p.R145R	.	.	103	7	58	0	.	71
WDR19	57728	bcgsc.ca	37	4	39236424	39236424	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WDR19	NM_025132	exon20	c.A2292G	p.Q764Q	.	.	93	4	50	0	.	67
WDR34	89891	bcgsc.ca	37	9	131396257	131396257	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WDR34	NM_052844	exon9	c.C1377T	p.D459D	.	.	99	6	44	0	.	92
WDR34	89891	bcgsc.ca	37	9	131396263	131396263	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WDR34	NM_052844	exon10	c.1373-2A>G	.	.	.	87	4	42	0	.	92
WDR41	55255	bcgsc.ca	37	5	76736799	76736799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WDR41	NM_018268	exon9	c.C721T	p.H241Y	.	.	127	5	44	0	.	90
WDR63	126820	bcgsc.ca	37	1	85589842	85589842	+	Missense_Mutation	SNP	A	A	G	rs17121745	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WDR63	NM_145172	exon19	c.A2020G	p.T674A	.	.	262	7	84	0	A|0.945;G|0.055	95
WDR67	93594	bcgsc.ca	37	8	124121843	124121843	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WDR67	NM_001145088	exon10	c.A1419G	p.L473L	.	.	130	5	48	0	.	226
WDSUB1	151525	bcgsc.ca	37	2	160112868	160112868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WDSUB1	NM_152528	exon9	c.A971G	p.Q324R	.	.	132	6	71	0	.	90
WNK4	65266	ucsc.edu	37	17	40947816	40947816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WNK4	NM_032387	exon16	c.A3196G	p.T1066A	.	.	37	4	20	0	.	336
WRN	7486	bcgsc.ca	37	8	30999280	30999280	+	Missense_Mutation	SNP	G	G	T	rs1801195	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	WRN	NM_000553	exon26	c.G3222T	p.L1074F	.	.	220	7	88	0	G|0.501;N|0.000	1036
XIRP2	129446	bcgsc.ca	37	2	168107184	168107184	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	XIRP2	NM_152381	exon9	c.T9282C	p.S3094S	.	.	141	7	73	0	.	104
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28112968	28112968	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	XPO6	NM_015171	exon23	c.G3087T	p.V1029V	.	.	40	16	24	0	.	227
YAE1D1	57002	bcgsc.ca	37	7	39610173	39610173	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_020192	exon2	c.T198C	p.Y66Y	.	.	126	6	50	0	.	.
YARS	8565	bcgsc.ca	37	1	33252548	33252548	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	YARS	NM_003680	exon7	c.T813C	p.L271L	.	.	107	5	52	0	.	92
YES1	7525	bcgsc.ca	37	18	751800	751800	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	YES1	NM_005433	exon3	c.T276C	p.G92G	.	.	54	5	49	0	.	547
YIPF1	54432	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	54348948	54348948	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	YIPF1	NM_018982	exon4	c.A33T	p.E11D	.	.	252	45	95	3	.	154
ZC3H13	23091	bcgsc.ca	37	13	46538176	46538176	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZC3H13	NM_015070	exon17	c.T4476C	p.D1492D	.	.	97	6	41	0	.	92
ZC3H13	23091	hgsc.bcm.edu	37	13	46549613	46549614	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZC3H13	NM_015070	exon12	c.2272_2273del	p.758_758del	.	.	816	24	156	1	.	92
ZC3H13	23091	hgsc.bcm.edu	37	13	46549808	46549809	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZC3H13	NM_015070	exon12	c.2077_2078del	p.693_693del	.	.	536	12	124	2	.	92
ZC3H7A	29066	bcgsc.ca	37	16	11862344	11862344	+	Missense_Mutation	SNP	C	C	T	rs146894114		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZC3H7A	NM_014153	exon12	c.G1187A	p.G396D	.	.	52	4	36	0	C|1.000;T|0.000	94
ZDHHC3	51304	broad.mit.edu;ucsc.edu	37	3	44968182	44968182	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZDHHC3	NM_016598	exon8	c.G983A	p.X328X	.	.	143	54	63	1	.	90
ZFP2	80108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178358877	178358877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZFP2	NM_030613	exon5	c.G563T	p.C188F	.	.	52	19	29	0	.	93
ZFX	7543	hgsc.bcm.edu	37	X	24229134	24229134	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZFX	NM_003410	exon10	c.2059delA	p.K687fs	.	.	457	11	136	2	.	132
ZGPAT	84619	bcgsc.ca	37	20	62364990	62364990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZGPAT	NM_032527	exon4	c.A770G	p.E257G	.	.	164	13	56	4	.	90
ZNF141	7700	bcgsc.ca	37	4	367441	367441	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF141	NM_003441	exon4	c.A1215G	p.R405R	.	.	119	6	53	0	.	90
ZNF264	9422	bcgsc.ca	37	19	57723259	57723259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF264	NM_003417	exon4	c.G794A	p.G265E	.	.	70	4	51	1	.	92
ZNF268	10795	ucsc.edu;bcgsc.ca	37	12	133780593	133780593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF268	NM_001165881	exon6	c.A2321G	p.H774R	.	.	28	4	21	0	.	23
ZNF322	79692	hgsc.bcm.edu;broad.mit.edu	37	6	26637760	26637762	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001242797	exon5	c.1020_1022del	p.340_341del	.	.	2022	240	193	0	.	.
ZNF358	140467	ucsc.edu	37	19	7585101	7585101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF358	NM_018083	exon2	c.G973A	p.G325S	.	.	49	4	16	0	.	90
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72346946	72346946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF407	NM_001146190	exon1	c.G3971A	p.G1324D	.	.	104	48	48	0	.	92
ZNF443	10224	bcgsc.ca	37	19	12541547	12541547	+	Missense_Mutation	SNP	T	T	G	rs10402252	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF443	NM_005815	exon4	c.A1439C	p.K480T	.	.	78	6	76	0	T|0.615;G|0.385	91
ZNF45	7596	bcgsc.ca	37	19	44418343	44418343	+	Silent	SNP	C	C	T	rs406968	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF45	NM_003425	exon10	c.G1245A	p.P415P	.	.	269	9	95	0	C|0.504;T|0.496	91
ZNF468	90333	ucsc.edu	37	19	53344118	53344118	+	Missense_Mutation	SNP	C	C	G	rs10419826	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF468	NM_001008801	exon4	c.G1429C	p.G477R	.	.	160	57	33	3	C|0.485;G|0.515	92
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu	37	16	88497694	88497695	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001127464	exon2	c.3732_3733del	p.1244_1245del	.	.	35	18	9	0	.	.
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121487810	121487810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF474	NM_207317	exon2	c.C125T	p.S42F	.	.	242	111	90	0	.	90
ZNF490	57474	ucsc.edu;bcgsc.ca	37	19	12692087	12692087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF490	NM_020714	exon5	c.C802T	p.H268Y	.	.	37	4	55	0	.	90
ZNF491	126069	bcgsc.ca	37	19	11916864	11916864	+	Silent	SNP	T	T	C	rs61736273	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF491	NM_152356	exon3	c.T96C	p.P32P	.	.	75	4	54	0	T|0.956;C|0.044	92
ZNF589	51385	bcgsc.ca	37	3	48309966	48309966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF589	NM_016089	exon4	c.A785G	p.Q262R	.	.	182	6	74	0	.	91
ZNF611	81856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53209133	53209133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF611	NM_030972	exon7	c.A1175G	p.H392R	.	.	107	41	60	0	.	91
ZNF626	199777	bcgsc.ca	37	19	20807297	20807297	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF626	NM_001076675	exon4	c.T1386C	p.F462F	.	.	55	7	31	0	.	515
ZNF626	199777	bcgsc.ca	37	19	20807300	20807300	+	Silent	SNP	A	A	G	rs4808252		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF626	NM_001076675	exon4	c.T1383C	p.A461A	.	.	59	7	30	0	A|0.500;G|0.500	515
ZNF679	168417	broad.mit.edu;bcgsc.ca	37	7	63726678	63726678	+	Missense_Mutation	SNP	T	T	A	rs1830036	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF679	NM_153363	exon5	c.T667A	p.C223S	.	.	127	7	74	0	T|0.899;A|0.101	1
ZNF709	163051	bcgsc.ca	37	19	12575316	12575316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF709	NM_152601	exon4	c.A1420G	p.K474E	.	.	56	4	54	0	.	90
ZNF767	79970	ucsc.edu	37	7	149318409	149318409	+	RNA	SNP	T	T	C	rs62490571	bycluster;byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF767	.	.	.	.	.	.	40	20	11	0	T|0.333;C|0.667	90
ZNF790	388536	bcgsc.ca	37	19	37309820	37309820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF790	NM_206894	exon5	c.A1426G	p.R476G	.	.	88	5	49	0	.	92
ZNF808	388558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53057994	53057994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001039886	exon5	c.G1825T	p.A609S	.	.	77	30	39	0	.	.
ZNF814	730051	broad.mit.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	G	T	rs201682072		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001144989	exon3	c.C1212A	p.D404E	.	.	450	33	138	0	.	.
ZNF846	162993	bcgsc.ca	37	19	9868970	9868970	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF846	NM_001077624	exon6	c.A783G	p.K261K	.	.	197	6	67	0	.	23
ZNF92	168374	bcgsc.ca	37	7	64864607	64864607	+	Missense_Mutation	SNP	G	G	A	rs10239197	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF92	NM_152626	exon4	c.G1580A	p.R527H	.	.	93	5	49	0	G|0.717;A|0.283	514
ZSCAN32	54925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3433548	3433548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_017810	exon6	c.A762C	p.R254S	.	.	307	121	112	0	.	.
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu	37	6	116987857	116987857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZUFSP	NM_145062	exon2	c.G499T	p.E167X	.	.	286	26	95	0	.	69
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	116987856	116987856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZUFSP	NM_145062	exon2	c.A500T	p.E167V	.	.	284	25	95	0	.	69
ZNF880	400713	ucsc.edu	37	19	52888049	52888050	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.Q406R	.	.	.	.	.	.	.	
LILRA6	79168	ucsc.edu	37	19	54745507	54745508	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.T201M	.	.	.	.	.	.	.	
LILRB4	11006	ucsc.edu	37	19	55179128	55179129	+	Missense_Mutation	DNP	AA	AA	CC	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.K363P	.	.	.	.	.	.	.	
SIRPA	140885	ucsc.edu;bcgsc.ca	37	20	1896059	1896060	+	Missense_Mutation	DNP	GT	GT	AC	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.V132T	.	.	.	.	.	.	.	
RP11-156N15.1	0	bcgsc.ca	37	5	75672532	75672533	+	RNA	DNP	AT	AT	CA	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	.	.	.	.	.	
CTD-2089O24.1	0	bcgsc.ca	37	5	110284399	110284400	+	RNA	DNP	CT	CT	TC	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	.	.	.	.	.	.	.	
COL10A1	1300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116441243	116441244	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.P679K	.	.	.	.	.	.	.	
KLHDC10	23008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129760678	129760679	+	Nonsense_Mutation	DNP	GT	GT	TA	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.V189*	.	.	.	.	.	.	.	
ARHGEF5	7984	broad.mit.edu;bcgsc.ca	37	7	144070301	144070302	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.C1355F	.	.	.	.	.	.	.	
GPNMB	10457	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23296688	23296689	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GG	GG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.W182F	.	.	.	.	.	.	.	
