Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AAK1	22848	bcgsc.ca	37	2	69741721	69741721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	AAK1	NM_014911	exon13	c.A1658G	p.Q553R	.	.	105	5	55	0	.	333
ABCA13	154664	bcgsc.ca	37	7	48375050	48375050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ABCA13	NM_152701	exon28	c.T10031C	p.L3344P	.	.	78	4	52	0	.	521
ABCA2	20	bcgsc.ca	37	9	139913220	139913220	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ABCA2	NM_212533	exon13	c.C1860A	p.V620V	.	.	57	4	44	1	.	90
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89039357	89039357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ABCG2	NM_004827	exon7	c.A745G	p.I249V	.	.	109	34	80	0	.	90
ABI1	10006	bcgsc.ca	37	10	27037671	27037671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ABI1	NM_005470	exon12	c.T1355C	p.V452A	.	.	95	4	56	0	.	1082
ACOT11	26027	ucsc.edu	37	1	55059714	55059714	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ACOT11	NM_015547	exon5	c.471+2T>C	.	.	.	45	4	36	0	.	90
ACTR3	10096	bcgsc.ca	37	2	114713220	114713220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ACTR3	NM_005721	exon11	c.A1098G	p.I366M	.	.	192	6	86	0	.	91
ADAM21	8747	ucsc.edu	37	14	70924852	70924852	+	Silent	SNP	A	A	C	rs78990308		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ADAM21	NM_003813	exon2	c.A636C	p.L212L	.	.	216	73	103	24	C|1.000;|0.000	92
ADAM21P1	145241	broad.mit.edu	37	14	70714259	70714259	+	RNA	SNP	A	A	G	rs7144638	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	156	16	99	3	A|0.719;G|0.281	.
ADAM7	8756	bcgsc.ca	37	8	24348315	24348315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ADAM7	NM_003817	exon13	c.T1270C	p.C424R	.	.	264	9	145	1	.	230
ADAMTS1	9510	bcgsc.ca	37	21	28212632	28212632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ADAMTS1	NM_006988	exon5	c.G1628A	p.G543D	.	.	62	5	37	0	.	272
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	131797673	131797673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ADCY8	NM_001115	exon16	c.G3109A	p.G1037S	.	.	109	9	51	0	.	157
AGBL2	79841	bcgsc.ca	37	11	47721015	47721015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	AGBL2	NM_024783	exon8	c.T677C	p.V226A	.	.	183	6	105	0	.	92
AGBL4	84871	broad.mit.edu;bcgsc.ca	37	1	50317133	50317133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	AGBL4	NM_032785	exon2	c.T92C	p.L31P	.	.	282	7	126	0	.	137
AGL	178	bcgsc.ca	37	1	100327842	100327842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	AGL	NM_000644	exon4	c.T323C	p.V108A	.	.	231	6	112	0	.	92
AKAP9	10142	bcgsc.ca	37	7	91712751	91712751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	AKAP9	NM_005751	exon33	c.A8428G	p.S2810G	.	.	80	4	67	0	.	755
AKT1S1	84335	bcgsc.ca	37	19	50374830	50374830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	AKT1S1	NM_032375	exon4	c.C661T	p.R221W	.	.	81	4	39	0	.	186
ALAD	210	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116151330	116151330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ALAD	NM_000031	exon11	c.G858C	p.W286C	.	.	70	12	49	0	.	90
ALB	213	ucsc.edu	37	4	74283904	74283904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ALB	NM_000477	exon12	c.C1528T	p.P510S	.	.	110	5	50	0	.	96
ALLC	55821	bcgsc.ca	37	2	3726124	3726124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ALLC	NM_018436	exon4	c.A151G	p.T51A	.	.	73	4	65	1	.	23
ALMS1	7840	bcgsc.ca	37	2	73682398	73682398	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ALMS1	NM_015120	exon9	c.T7647A	p.H2549Q	.	.	93	4	54	0	.	142
ALOXE3	59344	ucsc.edu	37	17	8021805	8021805	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ALOXE3	.	.	.	.	.	.	16	6	16	0	.	229
ALS2CR8	79800	hgsc.bcm.edu	37	2	203831759	203831759	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ALS2CR8	NM_024744	exon10	c.891delA	p.L297fs	.	.	929	13	176	1	.	136
AMMECR1	9949	bcgsc.ca	37	X	109459746	109459746	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	AMMECR1	NM_015365	exon3	c.G699A	p.E233E	.	.	72	4	83	0	.	130
ANGPT1	284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108297062	108297062	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANGPT1	NM_001146	exon7	c.C1053A	p.P351P	.	.	278	40	76	0	.	521
ANKRD20A8P	729171	ucsc.edu;bcgsc.ca	37	2	95461642	95461642	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	15	13	25	0	.	.
ANKRD27	84079	bcgsc.ca	37	19	33140638	33140638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANKRD27	NM_032139	exon3	c.T163C	p.S55P	.	.	62	4	34	0	.	95
ANKRD36BP2	645784	broad.mit.edu	37	2	89082254	89082254	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	13	5	14	0	.	.
ANKRD55	79722	bcgsc.ca	37	5	55407523	55407523	+	Missense_Mutation	SNP	C	C	T	rs76363118	byfrequency;alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANKRD55	NM_024669	exon10	c.G1052A	p.C351Y	.	.	320	11	117	0	C|0.996;A|0.004	91
ANO2	57101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5936960	5936960	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANO2	NM_020373	exon7	c.C855T	p.A285A	.	.	80	31	33	0	.	139
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101365128	101365128	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANO4	NM_178826	exon5	c.C396T	p.A132A	.	.	152	30	80	0	.	96
ANO9	338440	bcgsc.ca	37	11	428119	428119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANO9	NM_001012302	exon15	c.T1303C	p.S435P	.	.	180	6	87	0	.	227
ANP32A	8125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69076893	69076893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_006305	exon4	c.C369T	p.C123C	.	.	255	60	120	0	.	.
ANXA3	306	bcgsc.ca	37	4	79516991	79516991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANXA3	NM_005139	exon9	c.A584G	p.D195G	.	.	180	7	94	0	.	90
APOBEC3F	200316	ucsc.edu	37	22	39441096	39441096	+	Missense_Mutation	SNP	G	G	T	rs77279243		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	APOBEC3F	NM_145298	exon3	c.G322T	p.A108S	.	.	129	43	60	18	T|1.000;|0.000	226
APOL6	80830	bcgsc.ca	37	22	36055361	36055361	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	APOL6	NM_030641	exon3	c.C750A	p.A250A	.	.	49	4	40	0	.	90
ARHGAP42	143872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	100792230	100792230	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_152432	exon6	c.T492C	p.D164D	.	.	130	45	76	0	.	.
ARHGAP44	9912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12819314	12819314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ARHGAP44	NM_014859	exon5	c.T373A	p.F125I	.	.	99	29	61	0	.	90
ASAP2	8853	hgsc.bcm.edu	37	2	9528642	9528643	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ASAP2	NM_003887	exon22	c.2350_2351insC	p.A784fs	.	.	70	11	33	0	.	90
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31016044	31016044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ASXL1	NM_015338	exon4	c.A366G	p.E122E	.	.	142	17	73	0	.	2057
ASXL3	80816	bcgsc.ca	37	18	31263473	31263473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ASXL3	NM_030632	exon8	c.T820C	p.S274P	.	.	62	4	32	0	.	49
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31314285	31314285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ASXL3	NM_030632	exon10	c.C988T	p.P330S	.	.	211	56	126	0	.	49
ATG14	22863	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55857663	55857663	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATG14	NM_014924	exon4	c.A375G	p.Q125Q	.	.	216	29	117	1	.	90
ATG2A	23130	bcgsc.ca	37	11	64678535	64678535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATG2A	NM_015104	exon10	c.A1441G	p.R481G	.	.	58	6	46	1	.	69
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	96809512	96809512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATG2B	NM_018036	exon5	c.T688A	p.W230R	.	.	192	14	106	0	.	93
ATP5O	539	bcgsc.ca	37	21	35279666	35279666	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATP5O	NM_001697	exon5	c.T420C	p.P140P	.	.	60	5	49	0	.	91
ATP6V0A4	50617	bcgsc.ca	37	7	138437492	138437492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATP6V0A4	NM_130841	exon10	c.A907G	p.K303E	.	.	137	5	82	1	.	91
ATP8A2	51761	bcgsc.ca	37	13	26273415	26273415	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATP8A2	NM_016529	exon25	c.G2316A	p.A772A	.	.	106	5	55	0	.	138
ATP8B1	5205	bcgsc.ca	37	18	55364896	55364896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATP8B1	NM_005603	exon8	c.T652C	p.S218P	.	.	150	5	84	1	.	587
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50287725	50287725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATP9A	NM_006045	exon12	c.G1109A	p.G370E	.	.	107	30	47	0	.	94
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142215986	142215986	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATR	NM_001184	exon33	c.G5607A	p.Q1869Q	.	.	96	42	43	0	.	1139
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52440270	52440276	+	Frame_Shift_Del	DEL	TGCTGCA	TGCTGCA	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TGCTGCA	TGCTGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	BAP1,NS,carcinoma,-1	BAP1	NM_004656	exon9	c.776_782del	p.259_261del	.	.	53	14	61	0	.	1032
BARX2	8538	bcgsc.ca	37	11	129306889	129306889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BARX2	NM_003658	exon2	c.A431G	p.Q144R	.	.	145	6	70	0	.	90
BEST3	144453	bcgsc.ca	37	12	70087507	70087507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BEST3	NM_032735	exon4	c.T428C	p.V143A	.	.	89	4	49	0	.	248
BIK	638	hgsc.bcm.edu	37	22	43525235	43525252	+	In_Frame_Del	DEL	TGCTGCTGGCGCTGCTGC	TGCTGCTGGCGCTGCTGC	-	rs78298603	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TGCTGCTGGCGCTGCTGC	TGCTGCTGGCGCTGCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BIK	NM_001197	exon5	c.407_424del	p.136_142del	.	.	66	13	23	0	.	651
BLOC1S6	26258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45884374	45884374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_012388	exon2	c.T124A	p.L42M	.	.	73	25	53	0	.	.
BOC	91653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	112969411	112969411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BOC	NM_033254	exon4	c.C107T	p.P36L	.	.	94	7	47	0	.	157
BRD4	23476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15376412	15376412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BRD4	NM_058243	exon5	c.A602C	p.Q201P	.	.	330	44	119	1	.	767
BRIP1	83990	bcgsc.ca	37	17	59853873	59853873	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BRIP1	NM_032043	exon14	c.T1986C	p.A662A	.	.	101	5	62	0	.	660
BZW2	28969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	16720997	16720997	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BZW2	NM_014038	exon4	c.G307T	p.E103X	.	.	107	19	57	0	.	92
C10orf12	26148	bcgsc.ca	37	10	98742741	98742741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C10orf12	NM_015652	exon1	c.T1594C	p.C532R	.	.	101	5	53	0	.	92
C12orf42	374470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	103696092	103696092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C12orf42	NM_001099336	exon6	c.C877T	p.R293W	.	.	75	10	45	0	.	91
C17orf104	284071	bcgsc.ca	37	17	42744070	42744070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C17orf104	NM_001145080	exon5	c.C791T	p.P264L	.	.	91	4	58	0	.	22
C17orf70	80233	bcgsc.ca	37	17	79518050	79518050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C17orf70	NM_025161	exon3	c.A470G	p.Q157R	.	.	56	4	31	0	.	92
C18orf54	162681	bcgsc.ca	37	18	51892160	51892160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C18orf54	NM_173529	exon5	c.T812C	p.V271A	.	.	74	4	53	0	.	92
C19orf69	100170765	bcgsc.ca	37	19	41950107	41950107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001130514	exon2	c.C371A	p.P124H	.	.	64	4	39	0	.	.
C1orf162	128346	bcgsc.ca	37	1	112019452	112019452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C1orf162	NM_174896	exon3	c.A70G	p.T24A	.	.	159	5	92	0	.	91
C21orf58	54058	bcgsc.ca	37	21	47742561	47742561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C21orf58	NM_058180	exon1	c.T92C	p.L31P	.	.	113	5	54	0	.	91
C2CD4C	126567	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	408227	408227	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C2CD4C	NM_001136263	exon2	c.C135G	p.D45E	.	.	259	21	90	1	.	46
C2orf81	388963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74641896	74641896	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001145054	exon4	c.C1327T	p.L443L	.	.	102	19	48	0	.	.
C6orf163	206412	bcgsc.ca	37	6	88075095	88075095	+	Missense_Mutation	SNP	A	A	G	rs74563361	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C6orf163	NM_001010868	exon5	c.A971G	p.N324S	.	.	185	6	116	0	T|1.000;|0.000	23
C6orf211	79624	broad.mit.edu	37	6	151779673	151779673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C6orf211	NM_024573	exon3	c.A358G	p.M120V	.	.	178	5	67	0	.	90
CA2	760	hgsc.bcm.edu	37	8	86386635	86386635	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CA2	NM_000067	exon4	c.434delT	p.I145fs	.	.	703	15	146	3	.	90
CA8	767	bcgsc.ca	37	8	61192367	61192367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CA8	NM_004056	exon2	c.A173G	p.E58G	.	.	260	8	78	0	.	90
CABP2	51475	ucsc.edu	37	11	67287557	67287557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CABP2	NM_016366	exon5	c.A454G	p.I152V	.	.	45	4	24	0	.	91
CACUL1	143384	bcgsc.ca	37	10	120467101	120467101	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_153810	exon5	c.598-2A>G	.	.	.	61	4	47	0	.	.
CALCA	796	bcgsc.ca	37	11	14992683	14992683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CALCA	NM_001033953	exon2	c.A56G	p.Q19R	.	.	95	4	54	0	.	514
CALCOCO2	10241	bcgsc.ca	37	17	46925460	46925460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CALCOCO2	NM_001261390	exon4	c.T287C	p.F96S	.	.	65	4	47	0	.	91
CAMKK2	10645	hgsc.bcm.edu	37	12	121711966	121711989	+	In_Frame_Del	DEL	TGCAGCGTCCGTTCATGTCCAGGC	TGCAGCGTCCGTTCATGTCCAGGC	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TGCAGCGTCCGTTCATGTCCAGGC	TGCAGCGTCCGTTCATGTCCAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CAMKK2	NM_153500	exon2	c.341_364del	p.114_122del	.	.	55	15	12	0	.	450
CASC5	57082	bcgsc.ca	37	15	40903682	40903682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CASC5	NM_170589	exon8	c.A335G	p.E112G	.	.	95	5	84	0	.	660
CAST	831	bcgsc.ca	37	5	96071943	96071943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CAST	NM_001042440	exon8	c.A575G	p.K192R	.	.	47	4	41	0	.	517
CAST	831	bcgsc.ca	37	5	96073610	96073610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CAST	NM_001042440	exon9	c.A634G	p.T212A	.	.	64	4	44	0	.	517
CBX3	11335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26248077	26248077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CBX3	NM_016587	exon4	c.A232G	p.N78D	.	.	248	102	116	0	.	227
CBY1	25776	bcgsc.ca	37	22	39066933	39066933	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CBY1	NM_001002880	exon4	c.A252G	p.G84G	.	.	74	4	33	0	.	91
CCDC169-SOHLH2	100526761	bcgsc.ca	37	13	36776208	36776208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001198910	exon7	c.T302C	p.V101A	.	.	114	5	66	0	.	.
CCDC173	129881	bcgsc.ca	37	2	170502410	170502410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001085447	exon9	c.T1600C	p.S534P	.	.	58	4	60	0	.	.
CCDC174	51244	bcgsc.ca	37	3	14697103	14697103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_016474	exon3	c.A215G	p.K72R	.	.	229	6	97	0	.	.
CCDC84	338657	bcgsc.ca	37	11	118869732	118869732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CCDC84	NM_198489	exon3	c.A296G	p.K99R	.	.	82	4	60	0	.	91
CCDC93	54520	bcgsc.ca	37	2	118766203	118766203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CCDC93	NM_019044	exon2	c.T74C	p.V25A	.	.	179	8	89	0	.	154
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1322749	1322749	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CCNL2	NM_030937	exon11	c.G1425A	p.E475E	.	.	96	31	56	0	.	70
CD163L1	283316	bcgsc.ca	37	12	7519862	7519862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CD163L1	NM_174941	exon18	c.A4249G	p.R1417G	.	.	112	6	64	0	.	100
CD1D	912	broad.mit.edu;bcgsc.ca	37	1	158151980	158151980	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CD1D	NM_001766	exon4	c.A487T	p.I163F	.	.	324	8	114	0	.	92
CD200R1L	344807	bcgsc.ca	37	3	112546023	112546023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CD200R1L	NM_001008784	exon4	c.A496G	p.K166E	.	.	169	5	92	0	.	91
CDC27	996	bcgsc.ca	37	17	45234626	45234626	+	Silent	SNP	T	T	G	rs76359747	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CDC27	NM_001114091	exon6	c.A600C	p.T200T	.	.	195	26	99	8	T|0.500;G|0.500	291
CDC27	996	broad.mit.edu	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CDC27	NM_001114091	exon6	c.G601A	p.V201I	.	.	191	7	99	0	.	291
CDH1	999	bcgsc.ca	37	16	68862150	68862150	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CDH1	NM_004360	exon14	c.T2238C	p.D746D	.	.	82	4	57	0	.	3377
CDH8	1006	bcgsc.ca	37	16	62055162	62055162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CDH8	NM_001796	exon2	c.T146C	p.L49P	.	.	60	4	54	0	.	161
CDHR5	53841	bcgsc.ca	37	11	618833	618833	+	Missense_Mutation	SNP	G	G	C	rs139058512	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CDHR5	NM_021924	exon13	c.C1726G	p.P576A	.	.	306	27	82	1	G|0.998;C|0.002	90
CEL	1056	bcgsc.ca	37	9	135946015	135946015	+	Missense_Mutation	SNP	T	T	C	rs77696629	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CEL	NM_001807	exon10	c.T1463C	p.I488T	.	.	228	18	105	7	T|0.980;C|0.020	91
CELA3A	10136	hgsc.bcm.edu	37	1	22332241	22332241	+	Missense_Mutation	SNP	A	A	G	rs75527968	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CELA3A	NM_005747	exon4	c.A314G	p.E105G	.	.	133	9	70	0	A|0.500;G|0.500	45
CELA3A	10136	hgsc.bcm.edu	37	1	22332245	22332245	+	Missense_Mutation	SNP	G	G	C	rs74958230	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CELA3A	NM_005747	exon4	c.G318C	p.E106D	.	.	140	10	69	0	G|0.500;C|0.500	45
CELP	1057	ucsc.edu	37	9	135962189	135962189	+	RNA	SNP	C	C	G	rs76509213		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CELP	.	.	.	.	.	.	45	11	28	4	C|0.250;G|0.750	46
CEP135	9662	bcgsc.ca	37	4	56835274	56835274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CEP135	NM_025009	exon9	c.A1090G	p.T364A	.	.	222	6	121	0	.	94
CEP152	22995	bcgsc.ca	37	15	49060463	49060463	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CEP152	NM_014985	exon15	c.A1971G	p.R657R	.	.	215	6	118	0	.	70
CEP250	11190	bcgsc.ca	37	20	34063440	34063440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CEP250	NM_007186	exon15	c.A1685G	p.E562G	.	.	84	4	44	0	.	27
CEP350	9857	bcgsc.ca	37	1	180023561	180023561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CEP350	NM_014810	exon25	c.A5186G	p.D1729G	.	.	127	5	62	0	.	26
CERS6	253782	bcgsc.ca	37	2	169313127	169313127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001256126	exon1	c.A169G	p.R57G	.	.	117	5	51	0	.	.
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67006590	67006590	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CES3	NM_024922	exon12	c.G1461A	p.E487E	.	.	66	17	43	0	.	517
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4408946	4408946	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CHAF1A	NM_005483	exon3	c.C150T	p.A50A	.	.	129	16	58	0	.	92
CHGA	1113	bcgsc.ca	37	14	93398027	93398027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CHGA	NM_001275	exon6	c.A788G	p.K263R	.	.	90	4	52	0	.	516
CHIT1	1118	bcgsc.ca	37	1	203186947	203186947	+	Missense_Mutation	SNP	G	G	C	rs201682373	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CHIT1	NM_003465	exon10	c.C1076G	p.A359G	.	.	54	8	26	0	G|0.988;C|0.012	90
CHIT1	1118	ucsc.edu	37	1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	rs201320385	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CHIT1	NM_003465	exon10	c.G1073A	p.W358X	.	.	56	11	26	0	C|0.989;T|0.011	90
CKAP5	9793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46804849	46804849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CKAP5	NM_001008938	exon18	c.G2224A	p.A742T	.	.	56	6	43	0	.	92
CKMT2	1160	ucsc.edu	37	5	80562109	80562109	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CKMT2	.	.	.	.	.	.	30	5	26	0	.	90
CLASP2	23122	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33673843	33673843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CLASP2	NM_015097	exon9	c.G886A	p.A296T	.	.	212	74	95	1	.	93
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140140017	140140017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CLSTN2	NM_022131	exon5	c.G688C	p.E230Q	.	.	87	8	47	0	.	157
CLUH	23277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2604781	2604781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_015229	exon6	c.G664A	p.G222R	.	.	53	18	23	0	.	.
CMAS	55907	bcgsc.ca	37	12	22213801	22213801	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CMAS	NM_018686	exon5	c.A729G	p.E243E	.	.	79	4	48	0	.	93
CMIP	80790	ucsc.edu	37	16	81730230	81730230	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_198390	exon14	c.A1596G	p.G532G	.	.	38	4	24	0	.	.
CNBD1	168975	bcgsc.ca	37	8	88298867	88298867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CNBD1	NM_173538	exon8	c.T1010C	p.L337P	.	.	151	6	41	0	.	3
CNTNAP5	129684	bcgsc.ca	37	2	124979375	124979375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CNTNAP5	NM_130773	exon2	c.A176G	p.N59S	.	.	99	5	67	0	.	524
CNTROB	116840	bcgsc.ca	37	17	7836648	7836648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CNTROB	NM_001037144	exon1	c.A251G	p.E84G	.	.	63	4	44	0	.	153
COL4A2	1284	ucsc.edu;bcgsc.ca	37	13	111077155	111077155	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	COL4A2	NM_001846	exon5	c.A255G	p.G85G	.	.	27	4	30	0	.	95
COL6A2	1292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	47531490	47531492	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	COL6A2	NM_058175	exon2	c.100_102del	p.34_34del	.	.	112	22	52	0	.	515
CORO1C	23603	bcgsc.ca	37	12	109048114	109048114	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CORO1C	NM_014325	exon7	c.A823A	p.R275R	.	.	183	6	87	0	.	228
CPT1A	1374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68530229	68530229	+	Missense_Mutation	SNP	C	C	A	rs201706909	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CPT1A	NM_001876	exon15	c.G1741T	p.D581Y	.	.	39	24	20	0	C|0.999;T|0.001	149
CRIPAK	285464	bcgsc.ca	37	4	1388666	1388666	+	Missense_Mutation	SNP	C	C	T	rs9760377	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CRIPAK	NM_175918	exon1	c.C367T	p.R123W	.	.	115	16	31	0	C|0.999;T|0.001	90
CRIPAK	285464	bcgsc.ca	37	4	1388697	1388697	+	Missense_Mutation	SNP	C	C	T	rs113316888	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CRIPAK	NM_175918	exon1	c.C398T	p.A133V	.	.	98	24	20	0	C|0.982;T|0.018	90
CRY1	1407	bcgsc.ca	37	12	107393360	107393360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CRY1	NM_004075	exon7	c.A1106G	p.D369G	.	.	91	4	43	0	.	93
CRYL1	51084	bcgsc.ca	37	13	21063507	21063507	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CRYL1	NM_015974	exon4	c.276+2T>C	.	.	.	63	6	29	0	.	90
CTCFL	140690	bcgsc.ca	37	20	56090877	56090877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CTCFL	NM_001269044	exon5	c.A1073G	p.K358R	.	.	67	4	35	0	.	292
CTNS	1497	bcgsc.ca	37	17	3561333	3561333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CTNS	NM_001031681	exon10	c.G716A	p.G239D	.	.	107	5	38	0	.	90
CTTN	2017	bcgsc.ca	37	11	70266507	70266507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CTTN	NM_001184740	exon10	c.C681G	p.D227E	.	.	266	7	123	0	.	227
CTXN2	399697	broad.mit.edu	37	15	48493660	48493660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001145668	exon2	c.C163T	p.P55S	.	.	364	8	146	0	.	.
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17130262	17130262	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CUBN	NM_001081	exon15	c.T1848C	p.C616C	.	.	140	28	52	0	.	166
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767037	105767037	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CYLC2	NM_001340	exon4	c.T241C	p.L81L	.	.	128	35	76	0	.	91
CYP11B2	1585	ucsc.edu	37	8	143994266	143994266	+	Missense_Mutation	SNP	A	A	G	rs76151760	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CYP11B2	NM_000498	exon7	c.T1157C	p.V386A	.	.	114	100	36	7	A|0.500;G|0.500	90
CYP2B6	1555	ucsc.edu	37	19	41515263	41515263	+	Missense_Mutation	SNP	A	A	G	rs28399497	bycluster;byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CYP2B6	NM_000767	exon5	c.A785G	p.K262R	.	.	217	85	99	13	A|0.731;G|0.269	92
CYP2R1	120227	bcgsc.ca	37	11	14902178	14902178	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CYP2R1	NM_024514	exon3	c.T504C	p.A168A	.	.	68	4	64	0	.	91
CYP3A7	1551	bcgsc.ca	37	7	99308514	99308514	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CYP3A7	NM_000765	exon10	c.T867C	p.A289A	.	.	79	4	61	0	.	91
DARS	1615	bcgsc.ca	37	2	136673825	136673825	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DARS	NM_001349	exon11	c.A1077G	p.G359G	.	.	70	5	56	0	.	91
DCAF4	26094	bcgsc.ca	37	14	73406519	73406519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DCAF4	NM_001163509	exon3	c.C68T	p.P23L	.	.	89	4	58	0	.	92
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155278437	155278437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DCHS2	NM_017639	exon6	c.A734G	p.N245S	.	.	60	19	46	0	.	94
DDX12P	440081	mdanderson.org	37	12	9572801	9572801	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	42	7	13	0	.	.
DDX4	54514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55083699	55083699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DDX4	NM_024415	exon15	c.C1043T	p.A348V	.	.	128	30	81	0	.	227
DDX58	23586	bcgsc.ca	37	9	32476988	32476988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DDX58	NM_014314	exon13	c.T1916C	p.L639P	.	.	192	6	90	0	.	230
DENND5A	23258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9202573	9202573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DENND5A	NM_001243254	exon6	c.C1196A	p.P399Q	.	.	161	35	82	0	.	91
DGKZ	8525	bcgsc.ca	37	11	46388128	46388128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DGKZ	NM_001105540	exon2	c.C322A	p.L108M	.	.	97	5	50	0	.	676
DHCR7	1717	ucsc.edu	37	11	71148876	71148876	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DHCR7	NM_001163817	exon8	c.T945C	p.P315P	.	.	39	4	15	0	.	228
DHODH	1723	bcgsc.ca	37	16	72057472	72057472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DHODH	NM_001361	exon8	c.T1073C	p.L358P	.	.	77	4	46	0	.	227
DHRS9	10170	bcgsc.ca	37	2	169948305	169948305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DHRS9	NM_005771	exon7	c.A578G	p.D193G	.	.	130	5	72	0	.	90
DHX16	8449	hgsc.bcm.edu;broad.mit.edu	37	6	30621048	30621048	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DHX16	NM_003587	exon20	c.3097delA	p.I1033X	.	.	518	10	152	0	.	228
DIP2C	22982	bcgsc.ca	37	10	436315	436315	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DIP2C	NM_014974	exon13	c.1385-2A>G	.	.	.	91	4	53	0	.	156
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	436697	436697	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DIP2C	NM_014974	exon11	c.A1367T	p.E456V	.	.	94	23	54	0	.	156
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38135225	38135225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DLEC1	NM_007337	exon12	c.C1886T	p.T629M	.	.	189	54	68	0	.	161
DMD	1756	bcgsc.ca	37	X	31152234	31152234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DMD	NM_004006	exon77	c.T10999C	p.F3667L	.	.	85	4	72	0	.	265
DMRT2	10655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	1056606	1056606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DMRT2	NM_181872	exon4	c.G1019T	p.R340I	.	.	89	22	66	0	.	514
DNAH11	8701	bcgsc.ca	37	7	21631052	21631052	+	Missense_Mutation	SNP	A	A	G	rs72655997		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAH11	.	.	.	.	.	.	71	4	36	0	A|0.997;G|0.003	146
DNAH11	8701	bcgsc.ca	37	7	21920318	21920318	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAH11	NM_001277115	exon75	c.12196-2A>G	.	.	.	91	4	62	0	.	146
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225147985	225147985	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAH14	NM_144989	exon4	c.T348C	p.P116P	.	.	150	37	79	0	.	23
DNAH9	1770	bcgsc.ca	37	17	11687030	11687030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAH9	NM_001372	exon40	c.A7786G	p.T2596A	.	.	57	4	51	1	.	168
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11786904	11786904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAH9	NM_001372	exon56	c.C10808A	p.S3603Y	.	.	73	15	52	0	.	168
DNAJC21	134218	bcgsc.ca	37	5	34941285	34941285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAJC21	NM_001012339	exon7	c.A980G	p.K327R	.	.	215	6	84	0	.	154
DNASE1L3	1776	bcgsc.ca	37	3	58186731	58186731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNASE1L3	NM_004944	exon5	c.A539G	p.K180R	.	.	71	6	42	0	.	153
DNM1P46	196968	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100332658	100332658	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	44	9	22	0	.	.
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169484584	169484584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DOCK2	NM_004946	exon44	c.T4381C	p.S1461P	.	.	101	17	70	0	.	97
DOCK3	1795	bcgsc.ca	37	3	51264874	51264874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DOCK3	NM_004947	exon16	c.C1538T	p.S513F	.	.	91	7	64	0	.	22
DPP10	57628	bcgsc.ca	37	2	116101400	116101400	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DPP10	NM_001178034	exon3	c.C195T	p.L65L	.	.	87	4	63	0	.	142
DPP10	57628	bcgsc.ca	37	2	116283521	116283521	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DPP10	NM_001178034	exon5	c.T426C	p.Y142Y	.	.	84	4	60	0	.	142
DPP8	54878	bcgsc.ca	37	15	65748640	65748640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DPP8	NM_197960	exon17	c.T2089C	p.Y697H	.	.	72	4	56	0	.	91
DPY19L1	23333	bcgsc.ca	37	7	35013155	35013155	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DPY19L1	NM_015283	exon8	c.T666C	p.L222L	.	.	141	5	99	0	.	68
DPY19L1	23333	broad.mit.edu	37	7	35009120	35009120	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DPY19L1	NM_015283	exon9	c.C720T	p.S240S	.	.	433	10	163	0	.	68
DPYD	1806	bcgsc.ca	37	1	97770933	97770933	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DPYD	NM_000110	exon18	c.T2181C	p.G727G	.	.	122	5	85	0	.	278
DRAXIN	374946	bcgsc.ca	37	1	11775205	11775205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_198545	exon6	c.T877C	p.C293R	.	.	138	5	70	1	.	.
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65180960	65180960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DSEL	NM_032160	exon2	c.C916T	p.R306C	.	.	103	36	71	0	.	157
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28956907	28956907	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	DSG4,NS,carcinoma,+1	DSG4	NM_001134453	exon1	c.T33C	p.L11L	.	.	142	53	85	0	.	177
DSPP	1834	bcgsc.ca	37	4	88536609	88536609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DSPP	NM_014208	exon5	c.A2795G	p.N932S	.	.	293	34	114	0	.	90
DTWD1	56986	bcgsc.ca	37	15	49917563	49917563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DTWD1	NM_001144955	exon2	c.T199C	p.F67L	.	.	304	8	138	1	.	226
DUSP27	92235	broad.mit.edu;mdanderson.org	37	1	167095361	167095361	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DUSP27	NM_001080426	exon5	c.G993A	p.K331K	.	.	19	5	10	1	.	71
DYNC1H1	1778	bcgsc.ca	37	14	102483822	102483822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DYNC1H1	NM_001376	exon40	c.A8158G	p.R2720G	.	.	110	6	68	0	.	98
DYNC2H1	79659	bcgsc.ca	37	11	103270396	103270396	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DYNC2H1	NM_001080463	exon85	c.A12183G	p.S4061S	.	.	58	4	48	0	.	68
DZANK1	55184	bcgsc.ca	37	20	18396075	18396075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001099407	exon11	c.A973G	p.K325E	.	.	123	5	65	0	.	.
EBF2	64641	bcgsc.ca	37	8	25745442	25745442	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EBF2	NM_022659	exon9	c.A798G	p.T266T	.	.	69	4	61	0	.	26
EFCAB7	84455	bcgsc.ca	37	1	64027464	64027464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EFCAB7	NM_032437	exon11	c.A1433G	p.D478G	.	.	81	4	49	0	.	68
EHBP1	23301	bcgsc.ca	37	2	63206361	63206361	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EHBP1	NM_015252	exon16	c.A2604G	p.R868R	.	.	74	4	52	0	.	154
EHBP1L1	254102	bcgsc.ca	37	11	65351997	65351997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EHBP1L1	NM_001099409	exon11	c.A3292G	p.N1098D	.	.	73	6	45	0	.	69
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184910999	184910999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EHHADH	NM_001966	exon7	c.T1187G	p.L396R	.	.	169	64	98	0	.	93
EHMT1	79813	ucsc.edu;bcgsc.ca	37	9	140707934	140707934	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EHMT1	NM_024757	exon21	c.C3132T	p.N1044N	.	.	45	4	29	0	.	154
EIF2AK1	27102	bcgsc.ca	37	7	6089566	6089566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EIF2AK1	NM_001134335	exon3	c.T388C	p.S130P	.	.	104	6	54	0	.	408
EIF2B3	8891	bcgsc.ca	37	1	45345682	45345682	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EIF2B3	NM_020365	exon9	c.785-2A>G	.	.	.	91	5	66	0	.	92
ELN	2006	ucsc.edu;bcgsc.ca	37	7	73459618	73459618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ELN	NM_001081753	exon10	c.C551T	p.A184V	.	.	39	4	29	0	.	95
ELP2	55250	bcgsc.ca	37	18	33747150	33747150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ELP2	NM_001242875	exon20	c.A2236G	p.S746G	.	.	156	5	86	0	.	290
EPG5	57724	bcgsc.ca	37	18	43447711	43447711	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EPG5	NM_020964	exon37	c.G6228A	p.V2076V	.	.	65	4	44	0	.	580
EPHA5	2044	bcgsc.ca	37	4	66467421	66467421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EPHA5	NM_004439	exon3	c.T848C	p.L283P	.	.	83	4	44	0	.	1430
EPS8	2059	bcgsc.ca	37	12	15822717	15822717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EPS8	NM_004447	exon5	c.A247G	p.T83A	.	.	155	6	84	0	.	94
EPS8L1	54869	bcgsc.ca	37	19	55593170	55593170	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EPS8L1	NM_133180	exon9	c.A804G	p.V268V	.	.	181	6	47	0	.	115
ERI3	79033	bcgsc.ca	37	1	44785336	44785336	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ERI3	NM_024066	exon4	c.T570C	p.P190P	.	.	117	5	57	0	.	92
EVPL	2125	ucsc.edu;bcgsc.ca	37	17	74006092	74006092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EVPL	NM_001988	exon22	c.A3194G	p.K1065R	.	.	43	4	46	0	.	93
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	242035389	242035389	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EXO1	NM_130398	exon12	c.G1323A	p.K441K	.	.	376	32	140	0	.	661
EYS	346007	bcgsc.ca	37	6	65655730	65655730	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EYS	NM_001142800	exon15	c.T2337C	p.P779P	.	.	247	7	107	1	.	660
F13B	2165	bcgsc.ca	37	1	197008523	197008523	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	F13B	NM_001994	exon12	c.A1971G	p.E657E	.	.	253	8	116	1	.	92
FAM169B	283777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99023985	99023985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_182562	exon4	c.G28C	p.V10L	.	.	105	29	63	0	.	.
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	88	6	48	1	G|0.994;C|0.006	.
FAM189B	10712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155224577	155224577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAM189B	NM_001267608	exon1	c.T92G	p.L31R	.	.	170	19	47	0	.	154
FAM194B	220081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46135603	46135603	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAM194B	NM_182542	exon11	c.T1308C	p.P436P	.	.	382	35	149	0	.	68
FAM209A	200232	bcgsc.ca	37	20	55100891	55100891	+	Missense_Mutation	SNP	A	A	G	rs1054342	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001012971	exon2	c.A281G	p.Q94R	.	.	117	6	59	0	A|1.000;|0.000	.
FAM216A	29902	bcgsc.ca	37	12	110922915	110922915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_013300	exon3	c.C217T	p.H73Y	.	.	207	8	61	0	.	.
FAM83G	644815	ucsc.edu	37	17	18891724	18891724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAM83G	NM_001039999	exon3	c.A526G	p.I176V	.	.	44	4	22	0	.	69
FANCA	2175	bcgsc.ca	37	16	89825041	89825041	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FANCA	NM_000135	exon30	c.A2925G	p.G975G	.	.	68	4	39	0	.	1130
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150922777	150922777	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAT2	NM_001447	exon9	c.C7911T	p.N2637N	.	.	53	18	49	0	.	96
FBF1	85302	bcgsc.ca	37	17	73922401	73922401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FBF1	NM_001080542	exon10	c.C660A	p.S220R	.	.	65	4	44	0	.	205
FBN1	2200	bcgsc.ca	37	15	48741028	48741028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FBN1	NM_000138	exon46	c.G5608A	p.G1870R	.	.	77	4	45	0	.	92
FBRSL1	57666	ucsc.edu	37	12	133102343	133102343	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FBRSL1	NM_001142641	exon3	c.G513A	p.G171G	.	.	60	3	21	0	.	70
FBXL22	283807	ucsc.edu	37	15	63889923	63889923	+	Missense_Mutation	SNP	T	T	A	rs149590841	byfrequency;alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FBXL22	NM_203373	exon1	c.T332A	p.F111Y	.	.	26	4	11	0	T|1.000;G|0.000	90
FBXO18	84893	bcgsc.ca	37	10	5979233	5979233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FBXO18	NM_032807	exon22	c.T3275C	p.L1092P	.	.	82	4	49	0	.	228
FDXACB1	91893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111746109	111746109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FDXACB1	NM_138378	exon5	c.T1412C	p.I471T	.	.	85	48	69	0	.	22
FERMT3	83706	bcgsc.ca	37	11	63988073	63988073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FERMT3	NM_178443	exon12	c.T1489C	p.S497P	.	.	72	4	34	0	.	23
FES	2242	bcgsc.ca	37	15	91437205	91437205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FES	NM_002005	exon18	c.T2243C	p.I748T	.	.	73	5	45	0	.	546
FKBP14	55033	bcgsc.ca	37	7	30062351	30062351	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FKBP14	NM_017946	exon2	c.A279G	p.K93K	.	.	142	6	67	0	.	226
FNIP2	57600	bcgsc.ca	37	4	159789745	159789745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FNIP2	NM_020840	exon13	c.A1957G	p.K653E	.	.	80	4	54	0	.	68
FOLH1	2346	ucsc.edu	37	11	49207315	49207315	+	Silent	SNP	A	A	G	rs182169	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FOLH1	NM_004476	exon6	c.T732C	p.D244D	.	.	173	17	76	14	T|0.456;G|0.072	579
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79428611	79428611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FRAS1	NM_025074	exon62	c.C9353T	p.S3118F	.	.	179	51	99	0	.	68
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	RNA	SNP	G	G	A	rs7266938	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FRG1B	.	.	.	.	.	.	203	7	109	0	G|0.019;A|0.981	22
FRG1B	284802	bcgsc.ca	37	20	29628229	29628229	+	RNA	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FRG1B	.	.	.	.	.	.	1892	116	197	5	.	22
FRG1B	284802	ucsc.edu	37	20	29625935	29625935	+	RNA	SNP	A	A	G	rs62198354	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FRG1B	.	.	.	.	.	.	188	59	70	0	A|0.417;G|0.583	22
FRY	10129	bcgsc.ca	37	13	32823793	32823793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FRY	NM_023037	exon49	c.C7139T	p.P2380L	.	.	44	4	43	0	.	142
FTO	79068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53878098	53878098	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FTO	NM_001080432	exon4	c.T783A	p.H261Q	.	.	203	34	107	0	.	68
FUS	2521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31201608	31201608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FUS	NM_004960	exon12	c.G1181T	p.R394L	.	.	168	29	84	0	.	1719
GABRR2	2570	bcgsc.ca	37	6	90009582	90009582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GABRR2	NM_002043	exon2	c.A116G	p.H39R	.	.	67	5	74	0	.	68
GALNT4	8693	bcgsc.ca	37	12	89918032	89918032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_003774	exon1	c.A295G	p.R99G	.	.	176	6	79	0	.	.
GBP4	115361	ucsc.edu	37	1	89652097	89652097	+	Missense_Mutation	SNP	C	C	T	rs1142886	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GBP4	NM_052941	exon10	c.G1626A	p.M542I	.	.	401	114	152	4	C|0.619;T|0.381	90
GLMN	11146	bcgsc.ca	37	1	92733527	92733527	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GLMN	NM_053274	exon11	c.A1041G	p.E347E	.	.	159	5	103	0	.	227
GNAT3	346562	bcgsc.ca	37	7	80103645	80103645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GNAT3	NM_001102386	exon5	c.A512G	p.E171G	.	.	58	4	45	0	.	23
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42475346	42475346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPATCH8	NM_001002909	exon8	c.G4099A	p.A1367T	.	.	206	12	80	0	.	94
GPR107	57720	bcgsc.ca	37	9	132891006	132891006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPR107	NM_001136557	exon19	c.T1672C	p.S558P	.	.	89	4	64	0	.	91
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135453612	135453612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPR112	NM_153834	exon14	c.A7522G	p.M2508V	.	.	191	86	138	0	.	183
GPR153	387509	bcgsc.ca	37	1	6314670	6314670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPR153	NM_207370	exon2	c.T296C	p.F99S	.	.	138	6	78	0	.	514
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107115448	107115448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPR22	NM_005295	exon3	c.T943C	p.S315P	.	.	330	109	153	0	.	92
GPRC6A	222545	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	117150115	117150115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPRC6A	NM_148963	exon1	c.G62A	p.C21Y	.	.	173	25	77	1	.	96
GTF2E1	2960	bcgsc.ca	37	3	120499918	120499918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GTF2E1	NM_005513	exon5	c.G921T	p.E307D	.	.	88	4	51	0	.	91
GTF3C3	9330	bcgsc.ca	37	2	197629387	197629387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GTF3C3	NM_012086	exon18	c.A2561G	p.D854G	.	.	85	4	33	0	.	97
HAUS5	23354	ucsc.edu;bcgsc.ca	37	19	36106246	36106246	+	Missense_Mutation	SNP	A	A	G	rs199705430	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HAUS5	NM_015302	exon6	c.A443G	p.Q148R	.	.	43	4	30	0	A|0.999;C|0.001	68
HBS1L	10767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	135358101	135358102	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HBS1L	NM_001145207	exon5	c.1494_1495insA	p.N498fs	.	.	142	34	109	0	.	92
HCFC1	3054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153222832	153222832	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HCFC1	NM_005334	exon13	c.G2286A	p.K762K	.	.	211	89	111	0	.	132
HDGFRP3	0	bcgsc.ca	37	15	83832775	83832775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HDGFRP3	NM_016073	exon2	c.T137C	p.I46T	.	.	92	4	77	0	.	90
HECTD1	25831	bcgsc.ca	37	14	31576212	31576212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HECTD1	NM_015382	exon38	c.A6866G	p.E2289G	.	.	68	4	52	0	.	570
HECW1	23072	bcgsc.ca	37	7	43546738	43546738	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HECW1	NM_015052	exon22	c.T3634C	p.L1212L	.	.	48	4	42	0	.	669
HELZ2	85441	bcgsc.ca	37	20	62203544	62203544	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001037335	exon2	c.A195G	p.A65A	.	.	63	4	29	0	.	.
HIST1H3I	8354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27839822	27839822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HIST1H3I	NM_003533	exon1	c.T272C	p.M91T	.	.	180	85	65	0	.	91
HKDC1	80201	bcgsc.ca	37	10	71002973	71002973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HKDC1	NM_025130	exon7	c.A727G	p.S243G	.	.	108	6	52	0	.	95
HLA-DRB1	3123	bcgsc.ca	37	6	32549424	32549424	+	Missense_Mutation	SNP	C	C	T	rs112116022		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HLA-DRB1	NM_002124	exon3	c.G562A	p.V188M	.	.	388	74	106	8	C|0.500;T|0.500	1
HLA-DRB1	3123	bcgsc.ca	37	6	32549428	32549428	+	Silent	SNP	G	G	T	rs113663708	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HLA-DRB1	NM_002124	exon3	c.C558A	p.T186T	.	.	401	79	111	9	G|0.989;T|0.011	1
HLA-DRB1	3123	bcgsc.ca	37	6	32549481	32549481	+	Missense_Mutation	SNP	C	C	T	rs78916069	bycluster	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HLA-DRB1	NM_002124	exon3	c.G505A	p.A169T	.	.	422	53	146	21	.	1
HMCN1	83872	bcgsc.ca	37	1	186055449	186055449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HMCN1	NM_031935	exon58	c.T8956C	p.C2986R	.	.	209	6	83	0	.	113
HMGXB3	22993	bcgsc.ca	37	5	149431533	149431533	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HMGXB3	NM_014983	exon20	c.C3657A	p.P1219P	.	.	83	4	44	0	.	24
HNRNPA3P1	10151	ucsc.edu	37	10	44285217	44285217	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	31	4	14	0	.	.
HNRNPH1	3187	hgsc.bcm.edu	37	5	179043886	179043886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HNRNPH1	NM_001257293	exon11	c.G1191A	p.M397I	.	.	290	12	134	0	.	22
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HRC	NM_002152	exon1	c.A579G	p.E193E	.	.	201	18	96	0	.	91
HSD3B1	3283	bcgsc.ca	37	1	120054256	120054256	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HSD3B1	NM_000862	exon3	c.T276C	p.T92T	.	.	151	6	80	0	.	92
HSF5	124535	bcgsc.ca	37	17	56540365	56540365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HSF5	NM_001080439	exon4	c.G1320A	p.M440I	.	.	148	5	108	0	.	71
HYAL1	3373	bcgsc.ca	37	3	50339845	50339845	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HYAL1	NM_033159	exon2	c.C543A	p.A181A	.	.	52	4	38	1	.	278
HYDIN	54768	bcgsc.ca	37	16	70866784	70866784	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HYDIN	NM_001270974	exon80	c.T13866C	p.S4622S	.	.	61	4	38	0	.	92
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94223595	94223595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IDE	NM_004969	exon21	c.A2654T	p.H885L	.	.	521	78	163	0	.	92
IFIT3	3437	bcgsc.ca	37	10	91099382	91099382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IFIT3	NM_001549	exon2	c.A970G	p.K324E	.	.	89	4	72	0	.	90
IFNA4	3441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	21187344	21187344	+	Missense_Mutation	SNP	C	C	G	rs3203576		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IFNA4	NM_021068	exon1	c.G187C	p.E63Q	.	.	326	103	135	0	.	92
IFT46	56912	bcgsc.ca	37	11	118425756	118425756	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IFT46	NM_020153	exon7	c.T456C	p.P152P	.	.	155	5	80	0	.	90
IL31RA	133396	bcgsc.ca	37	5	55168118	55168118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IL31RA	NM_001242637	exon4	c.A293G	p.D98G	.	.	97	4	65	0	.	91
ILVBL	10994	bcgsc.ca	37	19	15230026	15230026	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ILVBL	NM_006844	exon9	c.G1002A	p.R334R	.	.	63	4	30	0	.	92
INSR	3643	bcgsc.ca	37	19	7120683	7120683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	INSR	NM_000208	exon20	c.A3607G	p.M1203V	.	.	63	4	39	0	.	1381
IQGAP2	10788	bcgsc.ca	37	5	75973144	75973144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IQGAP2	NM_006633	exon28	c.T3629C	p.I1210T	.	.	58	4	48	0	.	96
ITGA4	3676	bcgsc.ca	37	2	182388171	182388171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ITGA4	NM_000885	exon19	c.A2081G	p.K694R	.	.	168	7	91	0	.	230
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4732940	4732940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ITPR1	NM_001099952	exon32	c.G3914A	p.R1305Q	.	.	225	67	106	0	.	710
ITSN2	50618	bcgsc.ca	37	2	24521542	24521542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ITSN2	NM_147152	exon13	c.G1486A	p.E496K	.	.	148	5	79	0	.	539
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64950774	64950774	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	JMJD1C	NM_032776	exon17	c.C6171T	p.S2057S	.	.	529	161	151	0	.	275
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	64966479	64966479	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	JMJD1C	NM_032776	exon10	c.C4950G	p.Y1650X	.	.	525	161	174	0	.	275
KANK1	23189	bcgsc.ca	37	9	711632	711632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KANK1	NM_001256876	exon7	c.T866C	p.V289A	.	.	61	4	36	0	.	517
KCNA4	3739	bcgsc.ca	37	11	30033395	30033395	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KCNA4	NM_002233	exon2	c.A831G	p.R277R	.	.	107	6	48	0	.	517
KCNE1	3753	bcgsc.ca	37	21	35821897	35821897	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KCNE1	NM_001127669	exon3	c.T36C	p.F12F	.	.	80	4	42	0	.	92
KCNK13	56659	bcgsc.ca	37	14	90650486	90650486	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KCNK13	NM_022054	exon2	c.A366G	p.G122G	.	.	155	6	94	0	.	91
KCNQ1	3784	bcgsc.ca	37	11	2593301	2593301	+	Missense_Mutation	SNP	T	T	C	rs199473459		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KCNQ1	NM_000218	exon5	c.T742C	p.W248R	.	.	63	5	35	1	.	515
KHK	3795	bcgsc.ca	37	2	27315254	27315254	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KHK	NM_006488	exon2	c.T147C	p.V49V	.	.	45	4	30	1	.	115
KIAA0141	9812	bcgsc.ca	37	5	141318164	141318164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIAA0141	NM_001142603	exon12	c.T1388C	p.L463P	.	.	77	4	51	0	.	91
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27761333	27761333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIAA0556	NM_015202	exon16	c.A3052G	p.I1018V	.	.	83	14	54	0	.	141
KIAA1009	22832	bcgsc.ca	37	6	84871498	84871498	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIAA1009	NM_014895	exon20	c.A2643G	p.E881E	.	.	151	5	116	0	.	91
KIAA1107	23285	bcgsc.ca	37	1	92646375	92646375	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_015237	exon8	c.A1821G	p.K607K	.	.	100	5	73	0	.	.
KIF17	57576	bcgsc.ca	37	1	21014231	21014231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIF17	NM_020816	exon8	c.T1588C	p.S530P	.	.	63	4	41	0	.	94
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91474892	91474892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIF20B	NM_016195	exon8	c.A893G	p.K298R	.	.	174	64	107	0	.	93
KIF21A	55605	bcgsc.ca	37	12	39688276	39688276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIF21A	NM_001173464	exon38	c.G4975A	p.G1659S	.	.	236	6	96	0	.	97
KLC2	64837	bcgsc.ca	37	11	66026103	66026103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KLC2	NM_001134774	exon2	c.G38T	p.S13I	.	.	123	5	50	0	.	90
KLHDC2	23588	bcgsc.ca	37	14	50246370	50246370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KLHDC2	NM_014315	exon7	c.T691C	p.F231L	.	.	197	7	87	0	.	91
KRT14	3861	bcgsc.ca	37	17	39738724	39738724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KRT14	NM_000526	exon8	c.T1382C	p.V461A	.	.	51	4	32	0	.	91
KRT34	3885	broad.mit.edu;bcgsc.ca	37	17	39537390	39537390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KRT34	NM_021013	exon3	c.T632C	p.L211P	.	.	215	7	120	0	.	90
KRT73	319101	hgsc.bcm.edu	37	12	53001991	53001991	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KRT73	NM_175068	exon9	c.1612delA	p.T538fs	.	.	889	13	178	2	.	157
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KRTAP10-4	NM_198687	exon1	c.C216T	p.C72C	.	.	89	22	43	0	C|1.000;|0.000	90
KRTAP4-9	100132386	ucsc.edu	37	17	39261933	39261933	+	Missense_Mutation	SNP	C	C	T	rs7207685	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001146041	exon1	c.C293T	p.A98V	.	.	39	15	22	5	C|0.977;T|0.023	.
KRTAP5-7	440050	mdanderson.org	37	11	71238553	71238553	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KRTAP5-7	NM_001012503	exon1	c.C207T	p.S69S	.	.	97	36	54	0	.	68
KRTAP5-7	440050	ucsc.edu;bcgsc.ca	37	11	71238541	71238541	+	Silent	SNP	A	A	G	rs199810185	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KRTAP5-7	NM_001012503	exon1	c.A195G	p.G65G	.	.	91	57	56	4	A|0.996;G|0.004	68
KRTAP9-1	728318	bcgsc.ca	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001190460	exon1	c.C453T	p.P151P	.	.	89	24	21	0	C|0.500;T|0.500	.
KRTAP9-2	83899	ucsc.edu	37	17	39382942	39382942	+	Silent	SNP	C	C	A	rs79961737		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KRTAP9-2	NM_031961	exon1	c.C36A	p.T12T	.	.	122	51	60	24	C|0.125;A|0.875	23
KRTAP9-4	85280	ucsc.edu	37	17	39406104	39406104	+	Silent	SNP	T	T	G	rs11655843	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KRTAP9-4	NM_033191	exon1	c.T132G	p.V44V	.	.	43	16	25	4	T|0.453;G|0.547	44
L1CAM	3897	bcgsc.ca	37	X	153138124	153138124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	L1CAM	NM_000425	exon3	c.G120T	p.Q40H	.	.	136	5	80	0	.	138
LCE1E	353135	ucsc.edu	37	1	152760093	152760093	+	Silent	SNP	T	T	C	rs112600788	bycluster;byfrequency;by1000genomes	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LCE1E	NM_178353	exon2	c.T318C	p.C106C	.	.	314	69	95	3	T|0.901;C|0.099	90
LCE1E	353135	ucsc.edu	37	1	152760096	152760096	+	Silent	SNP	A	A	T	rs115864544	bycluster;byfrequency;by1000genomes	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LCE1E	NM_178353	exon2	c.A321T	p.G107G	.	.	328	86	96	8	A|0.901;T|0.099	90
LIFR	3977	bcgsc.ca	37	5	38489349	38489349	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LIFR	NM_002310	exon17	c.2168-2A>G	.	.	.	46	4	34	0	.	1173
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55106781	55106781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LILRA1	NM_006863	exon5	c.G575A	p.R192K	.	.	376	65	120	0	.	93
LILRA6	79168	ucsc.edu	37	19	54745989	54745989	+	Missense_Mutation	SNP	G	G	C	rs16985555	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LILRA6	NM_024318	exon3	c.C268G	p.Q90E	.	.	1674	433	183	11	G|0.667;C|0.333	24
LILRB1	10859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55143186	55143186	+	Silent	SNP	C	C	T	rs187037404		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LILRB1	NM_001081637	exon4	c.C306T	p.S102S	.	.	212	43	83	0	C|0.999;T|0.001	137
LILRB1	10859	bcgsc.ca	37	19	55148322	55148322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LILRB1	NM_001081637	exon15	c.T1952C	p.I651T	.	.	153	6	67	0	.	137
LILRB2	10288	bcgsc.ca	37	19	54782704	54782704	+	Missense_Mutation	SNP	G	G	C	rs7247451	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LILRB2	NM_005874	exon6	c.C918G	p.C306W	.	.	132	57	41	2	G|0.739;C|0.261	91
LILRB2	10288	bcgsc.ca	37	19	54782710	54782710	+	Silent	SNP	A	A	G	rs7247208	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LILRB2	NM_005874	exon6	c.T912C	p.S304S	.	.	142	58	46	2	A|0.695;G|0.305	91
LIPI	149998	hgsc.bcm.edu	37	21	15579205	15579206	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LIPI	NM_198996	exon1	c.40_41insA	p.Y14fs	.	.	72	10	60	0	.	70
LMAN1L	79748	bcgsc.ca	37	15	75114240	75114240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LMAN1L	NM_021819	exon10	c.A1130G	p.K377R	.	.	55	5	30	0	.	90
LMNB1	4001	bcgsc.ca	37	5	126168435	126168435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LMNB1	NM_005573	exon10	c.A1661G	p.E554G	.	.	218	7	117	0	.	226
LOC284009	0	bcgsc.ca	37	17	2310383	2310383	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	87	4	36	0	.	.
LOC643802	0	bcgsc.ca	37	16	53405135	53405135	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	42	4	45	0	.	.
LOC96610	0	bcgsc.ca	37	22	22664174	22664174	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	163	6	77	0	.	.
LPAR4	2846	hgsc.bcm.edu	37	X	78010648	78010649	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LPAR4	NM_005296	exon2	c.282_283insA	p.F94fs	.	.	157	11	94	0	.	133
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2925247	2925247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LPIN2	NM_014646	exon14	c.C1913G	p.S638C	.	.	186	53	88	0	.	227
LPL	4023	bcgsc.ca	37	8	19818434	19818434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LPL	NM_000237	exon8	c.A1162G	p.T388A	.	.	58	4	49	0	.	92
LPL	4023	ucsc.edu	37	8	19810923	19810923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LPL	NM_000237	exon4	c.A532G	p.R178G	.	.	45	4	43	0	.	92
LRIG1	26018	hgsc.bcm.edu	37	3	66444578	66444579	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LRIG1	NM_015541	exon12	c.1354_1355insG	p.P452fs	.	.	190	21	53	0	.	230
LRRC31	79782	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	169557828	169557828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LRRC31	NM_024727	exon9	c.A1601G	p.D534G	.	.	472	30	151	1	.	93
LRRC43	254050	ucsc.edu;bcgsc.ca	37	12	122676081	122676081	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LRRC43	NM_001098519	exon6	c.C1056A	p.G352G	.	.	46	4	32	0	.	135
LRRN3	54674	bcgsc.ca	37	7	110763425	110763425	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LRRN3	NM_018334	exon2	c.A597G	p.P199P	.	.	90	4	62	0	.	154
LY86-AS1	285780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	6347594	6347594	+	RNA	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	31	8	26	0	.	.
LYAR	55646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4275388	4275388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LYAR	NM_017816	exon8	c.G841A	p.D281N	.	.	149	40	76	0	.	90
LYST	1130	bcgsc.ca	37	1	235969159	235969159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LYST	NM_000081	exon6	c.A3277G	p.S1093G	.	.	187	6	89	0	.	143
LYST	1130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	235904821	235904821	+	Silent	SNP	C	C	T	rs116017878		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LYST	NM_000081	exon31	c.G8259A	p.S2753S	.	.	313	27	102	0	C|0.999;T|0.001	143
MAOA	4128	bcgsc.ca	37	X	43591957	43591957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MAOA	NM_000240	exon9	c.T967C	p.C323R	.	.	88	5	62	0	.	194
MAP3K12	7786	bcgsc.ca	37	12	53881090	53881090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MAP3K12	NM_001193511	exon2	c.T86C	p.L29P	.	.	180	6	73	0	.	604
MAP7	9053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136742909	136742909	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MAP7	NM_001198611	exon2	c.G162A	p.K54K	.	.	319	78	127	2	.	90
MAP7D3	79649	broad.mit.edu;bcgsc.ca	37	X	135301782	135301782	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MAP7D3	NM_024597	exon17	c.G2535A	p.A845A	.	.	528	15	181	0	.	110
MAPK14	1432	bcgsc.ca	37	6	36020589	36020589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MAPK14	NM_139012	exon2	c.A230G	p.H77R	.	.	87	4	50	0	.	1444
MARCH9	92979	bcgsc.ca	37	12	58152652	58152652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MARCH9	NM_138396	exon4	c.A1013G	p.E338G	.	.	163	5	56	2	.	492
MARS	4141	hgsc.bcm.edu	37	12	57910075	57910076	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MARS	NM_004990	exon20	c.2511_2512insA	p.A837fs	.	.	273	19	57	0	.	654
MCM2	4171	bcgsc.ca	37	3	127318286	127318286	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MCM2	NM_004526	exon2	c.T132C	p.R44R	.	.	101	5	40	0	.	230
MCOLN2	255231	bcgsc.ca	37	1	85406563	85406563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MCOLN2	NM_153259	exon8	c.A959G	p.K320R	.	.	74	4	43	0	.	94
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150873991	150873991	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MED12L	NM_053002	exon5	c.C600T	p.A200A	.	.	87	27	41	0	.	576
MED27	9442	bcgsc.ca	37	9	134952871	134952871	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MED27	NM_001253881	exon2	c.T306C	p.P102P	.	.	205	7	99	0	.	69
MED8	112950	bcgsc.ca	37	1	43853205	43853205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MED8	NM_052877	exon3	c.T239C	p.V80A	.	.	230	6	109	0	.	68
MELK	9833	bcgsc.ca	37	9	36674926	36674926	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MELK	NM_014791	exon17	c.A1770G	p.V590V	.	.	62	4	48	0	.	760
MESDC2	23184	bcgsc.ca	37	15	81271757	81271757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MESDC2	NM_015154	exon3	c.A508G	p.I170V	.	.	68	4	57	0	.	90
MICA	100507436	ucsc.edu;bcgsc.ca	37	6	31379817	31379817	+	Missense_Mutation	SNP	T	T	C	rs61736348	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001177519	exon4	c.T707C	p.I236T	.	.	101	26	35	3	T|0.565;C|0.435	.
MIR1256	100302155	ucsc.edu	37	X	103216806	103216806	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	50	5	53	0	.	.
MKNK1	8569	bcgsc.ca	37	1	47037757	47037757	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MKNK1	NM_003684	exon7	c.C471A	p.A157A	.	.	168	6	72	0	.	978
MMEL1	79258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2535696	2535696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MMEL1	NM_033467	exon10	c.A841G	p.M281V	.	.	126	82	67	0	.	90
MMP16	4325	broad.mit.edu;bcgsc.ca	37	8	89179912	89179912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MMP16	NM_005941	exon4	c.A695T	p.N232I	.	.	146	6	54	0	.	231
MMRN2	79812	bcgsc.ca	37	10	88704065	88704065	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MMRN2	NM_024756	exon5	c.T609C	p.P203P	.	.	64	4	56	0	.	153
MROH8	140699	bcgsc.ca	37	20	35752066	35752066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	193	7	70	0	.	.
MROH8	140699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35757451	35757451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	102	12	54	0	.	.
MRPL9	65005	bcgsc.ca	37	1	151734954	151734954	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MRPL9	NM_031420	exon3	c.G333A	p.L111L	.	.	87	5	52	0	.	91
MST1L	11223	broad.mit.edu	37	1	17084305	17084305	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001271733	exon13	c.G1712A	p.W571X	.	.	259	8	129	0	.	.
MST1L	11223	ucsc.edu	37	1	17085564	17085564	+	Missense_Mutation	SNP	A	A	G	rs80308386	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001271733	exon9	c.T1157C	p.L386P	.	.	121	21	60	7	A|0.625;G|0.375	.
MST1P2	11209	ucsc.edu	37	1	16975994	16975994	+	RNA	SNP	T	T	C	rs61772255	bycluster;byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	95	21	82	6	T|0.250;C|0.750	.
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55473534	55473534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTIF2	NM_002453	exon10	c.G1045A	p.A349T	.	.	256	24	125	0	.	91
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25823570	25823570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTMR6	NM_004685	exon14	c.T1666G	p.S556A	.	.	237	58	141	0	.	94
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11204794	11204794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTOR	NM_004958	exon34	c.A4783G	p.M1595V	.	.	42	28	28	0	.	1439
MUC1	4582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155160803	155160803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC1	NM_001204286	exon4	c.G751A	p.V251I	.	.	509	90	143	0	.	1147
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	100678400	100678400	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC17	NM_001040105	exon3	c.G3703T	p.E1235X	.	.	102	21	67	0	.	95
MUC21	394263	bcgsc.ca	37	6	30954648	30954648	+	Silent	SNP	G	G	A	rs147486343	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC21	NM_001010909	exon2	c.G696A	p.T232T	.	.	170	37	56	0	G|0.993;A|0.007	92
MUC21	394263	bcgsc.ca	37	6	30954659	30954659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC21	NM_001010909	exon2	c.G707A	p.G236E	.	.	188	13	58	0	.	92
MUC21	394263	bcgsc.ca	37	6	30955143	30955143	+	Silent	SNP	G	G	A	rs41288705	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC21	NM_001010909	exon2	c.G1191A	p.T397T	.	.	147	33	52	0	G|0.967;A|0.033	92
MUC2	4583	bcgsc.ca	37	11	1092951	1092951	+	Silent	SNP	T	T	C	rs187978467		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC2	NM_002457	exon30	c.T4770C	p.T1590T	.	.	116	23	50	8	.	90
MUC2	4583	broad.mit.edu	37	11	1093069	1093069	+	Missense_Mutation	SNP	A	A	G	rs201496058		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC2	NM_002457	exon30	c.A4888G	p.T1630A	.	.	68	9	29	1	.	90
MUC2	4583	hgsc.bcm.edu;bcgsc.ca	37	11	1093344	1093344	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC2	NM_002457	exon30	c.G5163T	p.P1721P	.	.	114	8	63	0	.	90
MUC2	4583	mdanderson.org	37	11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC2	NM_002457	exon30	c.C4790T	p.T1597I	.	.	125	12	38	1	.	90
MUC4	4585	bcgsc.ca	37	3	195505835	195505835	+	Missense_Mutation	SNP	C	C	T	rs58500707		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.G12616A	p.A4206T	.	.	252	40	89	4	.	90
MUC4	4585	bcgsc.ca	37	3	195505838	195505838	+	Missense_Mutation	SNP	G	G	C	rs59101491		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.C12613G	p.H4205D	.	.	254	13	89	4	.	90
MUC4	4585	bcgsc.ca	37	3	195507756	195507756	+	Missense_Mutation	SNP	C	C	G	rs140571210		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.G10695C	p.Q3565H	.	.	328	97	84	10	.	90
MUC4	4585	bcgsc.ca	37	3	195508067	195508067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.A10384G	p.T3462A	.	.	184	31	51	0	.	90
MUC4	4585	bcgsc.ca	37	3	195509443	195509443	+	Missense_Mutation	SNP	A	A	G	rs74585045		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.T9008C	p.I3003T	.	.	161	75	38	6	A|0.250;G|0.750	90
MUC4	4585	bcgsc.ca	37	3	195509886	195509886	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.C8565G	p.S2855S	.	.	239	32	89	3	.	90
MUC4	4585	bcgsc.ca	37	3	195511358	195511358	+	Missense_Mutation	SNP	C	C	G	rs77614482		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.G7093C	p.D2365H	.	.	215	16	76	1	C|0.991;G|0.009	90
MUC4	4585	bcgsc.ca	37	3	195511412	195511412	+	Missense_Mutation	SNP	T	T	A	rs199878638		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.A7039T	p.T2347S	.	.	222	29	62	1	.	90
MUC4	4585	bcgsc.ca	37	3	195511431	195511431	+	Silent	SNP	A	A	G	rs201715837	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.T7020C	p.T2340T	.	.	226	37	57	0	A|0.981;G|0.019	90
MUC4	4585	bcgsc.ca	37	3	195511955	195511955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.A6496G	p.T2166A	.	.	180	35	49	0	.	90
MUC4	4585	broad.mit.edu	37	3	195511943	195511943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.T6508C	p.S2170P	.	.	206	13	56	1	.	90
MUC4	4585	broad.mit.edu	37	3	195513806	195513806	+	Missense_Mutation	SNP	C	C	G	rs199976859	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.G4645C	p.D1549H	.	.	164	11	62	2	C|0.932;G|0.068	90
MUC4	4585	hgsc.bcm.edu	37	3	195515393	195515393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.G3058A	p.G1020S	.	.	243	14	78	0	.	90
MUC4	4585	ucsc.edu	37	3	195515338	195515338	+	Missense_Mutation	SNP	A	A	G	rs13060286	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.T3113C	p.V1038A	.	.	216	32	68	1	A|0.989;G|0.011	90
MUC6	4588	bcgsc.ca	37	11	1016818	1016818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC6	NM_005961	exon31	c.T5983C	p.Y1995H	.	.	1490	70	200	3	.	23
MUC6	4588	bcgsc.ca	37	11	1017186	1017186	+	Missense_Mutation	SNP	A	A	G	rs74579726	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC6	NM_005961	exon31	c.T5615C	p.M1872T	.	.	558	36	165	3	A|0.500;G|0.500	23
MUC6	4588	bcgsc.ca	37	11	1017280	1017280	+	Missense_Mutation	SNP	G	G	T	rs199539548		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC6	NM_005961	exon31	c.C5521A	p.P1841T	.	.	712	39	178	1	.	23
MUC6	4588	bcgsc.ca	37	11	1017470	1017470	+	Silent	SNP	G	G	T	rs75533660		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC6	NM_005961	exon31	c.C5331A	p.G1777G	.	.	580	117	167	0	G|0.500;T|0.500	23
MUC6	4588	bcgsc.ca	37	11	1017483	1017483	+	Missense_Mutation	SNP	T	T	G	rs79986665		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC6	NM_005961	exon31	c.A5318C	p.H1773P	.	.	659	137	173	1	T|0.500;G|0.500	23
MUC6	4588	bcgsc.ca	37	11	1018025	1018025	+	Silent	SNP	C	C	A	rs10751677	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC6	NM_005961	exon31	c.G4776T	p.T1592T	.	.	244	74	106	1	C|0.597;A|0.403	23
MUC6	4588	ucsc.edu;bcgsc.ca	37	11	1018031	1018031	+	Silent	SNP	G	G	A	rs10751678	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC6	NM_005961	exon31	c.C4770T	p.P1590P	.	.	248	68	107	2	G|0.595;A|0.405	23
MYH13	8735	bcgsc.ca	37	17	10258012	10258012	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYH13	NM_003802	exon11	c.A990G	p.E330E	.	.	79	4	36	0	.	6
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10404577	10404577	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYH1	NM_005963	exon27	c.G3588A	p.L1196L	.	.	183	51	103	0	.	171
MYH9	4627	bcgsc.ca	37	22	36722642	36722642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYH9	NM_002473	exon5	c.G583A	p.A195T	.	.	123	5	58	0	.	292
MYLK	4638	bcgsc.ca	37	3	123366116	123366116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYLK	NM_053025	exon27	c.T4574C	p.V1525A	.	.	296	7	93	1	.	365
MYLPF	29895	bcgsc.ca	37	16	30387482	30387482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYLPF	NM_013292	exon3	c.A113G	p.D38G	.	.	51	5	33	0	.	68
MYO1D	4642	bcgsc.ca	37	17	31039011	31039011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYO1D	NM_015194	exon16	c.C2116A	p.Q706K	.	.	19	4	26	0	.	137
MYOC	4653	bcgsc.ca	37	1	171621744	171621744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYOC	NM_000261	exon1	c.T8C	p.F3S	.	.	125	5	48	0	.	226
MYOF	26509	bcgsc.ca	37	10	95097657	95097657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYOF	NM_013451	exon40	c.T4352C	p.V1451A	.	.	74	4	63	0	.	93
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95123767	95123767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYOF	NM_013451	exon27	c.G2819A	p.R940H	.	.	48	19	25	0	.	93
MYOM2	9172	bcgsc.ca	37	8	2054092	2054092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYOM2	NM_003970	exon22	c.G2795A	p.C932Y	.	.	75	4	64	0	.	95
NACAD	23148	ucsc.edu	37	7	45125330	45125330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001146334	exon2	c.A449G	p.D150G	.	.	50	4	41	0	.	.
NBPF9	400818	broad.mit.edu	37	1	144828583	144828583	+	Silent	SNP	G	G	A	rs76717388		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	280	35	93	0	G|0.500;A|0.500	.
NCAPH	23397	bcgsc.ca	37	2	97019110	97019110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NCAPH	NM_015341	exon8	c.A977G	p.Q326R	.	.	75	4	44	0	.	228
NCOR2	9612	mdanderson.org	37	12	124971109	124971109	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NCOR2	NM_006312	exon4	c.C111A	p.V37V	.	.	29	6	20	0	.	229
NDOR1	27158	bcgsc.ca	37	9	140109585	140109585	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NDOR1	NM_001144026	exon9	c.T1104C	p.P368P	.	.	51	4	33	0	.	90
NDUFB5	4711	bcgsc.ca	37	3	179334808	179334808	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NDUFB5	NM_002492	exon4	c.C318A	p.V106V	.	.	90	4	45	0	.	91
NEB	4703	bcgsc.ca	37	2	152375516	152375516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NEB	NM_001271208	exon156	c.T22763C	p.M7588T	.	.	141	5	89	0	.	145
NLGN4X	57502	bcgsc.ca	37	X	5827266	5827266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	NLGN4X,colon,carcinoma,0	NLGN4X	NM_181332	exon4	c.G640A	p.G214S	.	.	159	5	108	0	.	195
NLRC4	58484	ucsc.edu	37	2	32476049	32476049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NLRC4	NM_001199138	exon4	c.C884A	p.A295D	.	.	45	4	43	0	.	276
NLRP8	126205	bcgsc.ca	37	19	56477597	56477597	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NLRP8	NM_176811	exon5	c.C2232T	p.S744S	.	.	116	5	56	0	.	361
NOL4	8715	bcgsc.ca	37	18	31709846	31709846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NOL4	NM_003787	exon2	c.A403G	p.T135A	.	.	77	4	50	0	.	93
NOL9	79707	bcgsc.ca	37	1	6601921	6601921	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NOL9	NM_024654	exon6	c.T1044C	p.I348I	.	.	59	4	51	0	.	515
NOM1	64434	bcgsc.ca	37	7	156759732	156759732	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NOM1	NM_138400	exon9	c.T2244C	p.V748V	.	.	130	5	79	0	.	90
NOP14-AS1	317648	ucsc.edu	37	4	2940485	2940485	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	98	1	67	1	.	.
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	117710212	117710212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NOS1	NM_000620	exon10	c.A1817G	p.N606S	.	.	96	8	51	0	.	154
NRXN1	9378	bcgsc.ca	37	2	50780047	50780047	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NRXN1	NM_001135659	exon10	c.A1557G	p.L519L	.	.	134	6	74	0	.	92
NSDHL	50814	bcgsc.ca	37	X	152031240	152031240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NSDHL	NM_015922	exon5	c.A515G	p.Y172C	.	.	79	4	58	0	.	130
NUP205	23165	bcgsc.ca	37	7	135310101	135310101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NUP205	NM_015135	exon32	c.A4669G	p.M1557V	.	.	66	4	45	0	.	207
NUP98	4928	bcgsc.ca	37	11	3697417	3697417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NUP98	NM_016320	exon33	c.T5375C	p.L1792P	.	.	94	4	47	0	.	703
NXPE4	54827	bcgsc.ca	37	11	114453332	114453332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001077639	exon3	c.T508C	p.F170L	.	.	126	5	85	0	.	.
NYAP1	222950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100085893	100085893	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_173564	exon4	c.C549T	p.G183G	.	.	67	23	50	0	.	.
OCA2	4948	ucsc.edu;bcgsc.ca	37	15	28235793	28235793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OCA2	NM_000275	exon10	c.A1045G	p.I349V	.	.	19	4	36	0	.	135
OCLN	100506658	bcgsc.ca	37	5	68805025	68805025	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OCLN	NM_001205254	exon3	c.A108G	p.R36R	.	.	133	5	78	0	.	68
OCRL	4952	bcgsc.ca	37	X	128703266	128703266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OCRL	NM_000276	exon15	c.T1492C	p.C498R	.	.	176	6	121	0	.	206
OPTC	26254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203468895	203468895	+	Silent	SNP	G	G	T	rs114294638	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OPTC	NM_014359	exon5	c.G648T	p.L216L	.	.	188	114	74	0	G|0.998;A|0.002	492
OR10A5	144124	mdanderson.org	37	11	6867473	6867473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR10A5	NM_178168	exon1	c.A560G	p.K187R	.	.	298	23	123	3	.	71
OR10G2	26534	ucsc.edu	37	14	22102592	22102592	+	Missense_Mutation	SNP	T	T	C	rs10138694	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR10G2	NM_001005466	exon1	c.A407G	p.H136R	.	.	124	22	56	1	T|0.629;C|0.371	69
OR10G2	26534	ucsc.edu	37	14	22102612	22102612	+	Silent	SNP	T	T	C	rs10138704	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR10G2	NM_001005466	exon1	c.A387G	p.L129L	.	.	119	19	58	0	T|0.628;C|0.372	69
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158435704	158435704	+	Missense_Mutation	SNP	T	T	C	rs145698229	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR10K1	NM_001004473	exon1	c.T353C	p.M118T	.	.	407	68	146	0	T|0.997;C|0.003	69
OR10R2	343406	broad.mit.edu	37	1	158450160	158450160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR10R2	NM_001004472	exon1	c.G493T	p.A165S	.	.	388	8	129	0	.	161
OR13C2	392376	ucsc.edu	37	9	107367431	107367431	+	Missense_Mutation	SNP	A	A	T	rs61735925	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR13C2	NM_001004481	exon1	c.T478A	p.S160T	.	.	251	74	114	9	A|0.158;T|0.842	69
OR13C9	286362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107379994	107379994	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR13C9	NM_001001956	exon1	c.A492G	p.V164V	.	.	206	67	105	0	.	68
OR1Q1	158131	bcgsc.ca	37	9	125377140	125377140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR1Q1	NM_012364	exon1	c.A124G	p.N42D	.	.	204	7	113	1	.	69
OR2B6	26212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	27925139	27925139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR2B6	NM_012367	exon1	c.G121A	p.G41S	.	.	385	16	147	0	.	69
OR2T12	127064	broad.mit.edu	37	1	248458379	248458379	+	Missense_Mutation	SNP	C	C	T	rs139522908		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR2T12	NM_001004692	exon1	c.G502A	p.G168S	.	.	513	6	141	0	C|1.000;T|0.000	71
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525285	248525285	+	Missense_Mutation	SNP	T	T	C	rs28637620	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR2T4	NM_001004696	exon1	c.T403C	p.F135L	.	.	974	138	161	7	T|0.865;C|0.135	68
OR4C45	403257	bcgsc.ca	37	11	48367136	48367136	+	RNA	SNP	C	C	T	rs78927905	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	68	19	43	0	C|0.571;T|0.429	.
OR51A4	401666	ucsc.edu	37	11	4968155	4968155	+	Missense_Mutation	SNP	T	T	C	rs1817206		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR51A4	NM_001005329	exon1	c.A176G	p.E59G	.	.	394	135	182	1	C|1.000;|0.000	71
OR6B3	150681	ucsc.edu	37	2	240985347	240985347	+	Missense_Mutation	SNP	G	G	A	rs61730684	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6B3	NM_173351	exon1	c.C143T	p.T48I	.	.	128	83	73	17	G|0.122;A|0.878	68
OR6C74	254783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55641327	55641327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6C74	NM_001005490	exon1	c.G256A	p.G86S	.	.	260	70	108	0	.	68
OR6K6	128371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158725609	158725609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6K6	NM_001005184	exon1	c.A1004G	p.Q335R	.	.	301	46	118	0	.	69
OR6M1	390261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123676275	123676275	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6M1	NM_001005325	exon1	c.G783A	p.Q261Q	.	.	161	81	84	0	.	70
OR8U1	219417	ucsc.edu	37	11	56143696	56143696	+	Silent	SNP	C	C	T	rs4990122	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR8U1	NM_001005204	exon1	c.C597T	p.I199I	.	.	664	85	179	6	C|0.991;T|0.009	72
OR8U1	219417	ucsc.edu	37	11	56143699	56143699	+	Missense_Mutation	SNP	T	T	G	rs4990121	bycluster;byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR8U1	NM_001005204	exon1	c.T600G	p.F200L	.	.	660	78	181	3	T|0.500;G|0.500	72
OTOP1	133060	ucsc.edu	37	4	4190683	4190683	+	Silent	SNP	G	G	A	rs116072164	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OTOP1	NM_177998	exon6	c.C1686T	p.A562A	.	.	311	94	104	40	G|0.934;A|0.066	92
OVGP1	5016	bcgsc.ca	37	1	111965554	111965554	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OVGP1	NM_002557	exon6	c.A603G	p.L201L	.	.	91	4	49	0	.	135
PABPC1L	80336	broad.mit.edu;bcgsc.ca	37	20	43545448	43545448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PABPC1L	NM_001124756	exon3	c.A439G	p.T147A	.	.	193	8	63	0	.	47
PACSIN1	29993	bcgsc.ca	37	6	34498065	34498065	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PACSIN1	NM_020804	exon7	c.T834C	p.A278A	.	.	127	5	55	0	.	68
PALB2	79728	bcgsc.ca	37	16	23646706	23646706	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PALB2	NM_024675	exon4	c.T1161C	p.S387S	.	.	72	4	67	0	.	1351
PAPOLB	56903	hgsc.bcm.edu	37	7	4899906	4899927	+	Frame_Shift_Del	DEL	TTCTGTTGAGTGTGCTTTCTTG	TTCTGTTGAGTGTGCTTTCTTG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TTCTGTTGAGTGTGCTTTCTTG	TTCTGTTGAGTGTGCTTTCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PAPOLB	NM_020144	exon1	c.1515_1536del	p.505_512del	.	.	65	0	22	0	.	493
PAPOLB	56903	hgsc.bcm.edu;broad.mit.edu	37	7	4899906	4899913	+	Frame_Shift_Del	DEL	TTCTGTTG	TTCTGTTG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TTCTGTTG	TTCTGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PAPOLB	NM_020144	exon1	c.1529_1536del	p.510_512del	.	.	65	11	22	0	.	493
PAPOLB	56903	hgsc.bcm.edu;broad.mit.edu	37	7	4899915	4899927	+	Frame_Shift_Del	DEL	GTGTGCTTTCTTG	GTGTGCTTTCTTG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	GTGTGCTTTCTTG	GTGTGCTTTCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PAPOLB	NM_020144	exon1	c.1515_1527del	p.505_509del	.	.	62	11	25	0	.	493
PATL1	219988	bcgsc.ca	37	11	59426359	59426359	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PATL1	NM_152716	exon4	c.C406A	p.R136R	.	.	136	5	87	0	.	1
PAXIP1	22976	bcgsc.ca	37	7	154755463	154755463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PAXIP1	NM_007349	exon9	c.A1907G	p.H636R	.	.	84	4	55	0	.	228
PCCB	5096	bcgsc.ca	37	3	136048839	136048839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCCB	NM_001178014	exon16	c.T1651C	p.W551R	.	.	149	6	62	0	.	90
PCDHA2	56146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140175842	140175842	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHA2	NM_031495	exon1	c.C1293T	p.G431G	.	.	110	16	66	1	.	94
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140188279	140188279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHA4	NM_031500	exon1	c.G1507A	p.A503T	.	.	112	36	40	0	.	96
PCDHA9	9752	ucsc.edu	37	5	140228410	140228410	+	Silent	SNP	A	A	G	rs17844322		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHA9	NM_031857	exon1	c.A330G	p.V110V	.	.	126	36	61	5	A|0.821;G|0.179	138
PCDHA9	9752	ucsc.edu	37	5	140228413	140228413	+	Missense_Mutation	SNP	C	C	A	rs17844323		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHA9	NM_031857	exon1	c.C333A	p.D111E	.	.	135	40	64	7	C|0.819;A|0.181	138
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140723657	140723657	+	Silent	SNP	C	C	T	rs200693710	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHGA3	NM_032011	exon1	c.C57T	p.L19L	.	.	61	17	47	0	C|0.999;G|0.000	68
PCP4L1	654790	hgsc.bcm.edu;broad.mit.edu	37	1	161254154	161254156	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001102566	exon3	c.90_92del	p.30_31del	.	.	634	10	153	0	.	.
PDE11A	50940	bcgsc.ca	37	2	178769849	178769849	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PDE11A	NM_016953	exon3	c.A1137G	p.S379S	.	.	213	6	98	0	.	93
PDE4DIP	9659	ucsc.edu	37	1	144855866	144855866	+	Silent	SNP	A	A	G	rs72473741		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PDE4DIP	NM_014644	exon41	c.T6687C	p.G2229G	.	.	69	18	31	3	.	663
PDE6A	5145	bcgsc.ca	37	5	149276329	149276329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PDE6A	NM_000440	exon11	c.A1418G	p.E473G	.	.	77	6	50	0	.	92
PDGFRA	5156	bcgsc.ca	37	4	55127304	55127304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PDGFRA	NM_006206	exon3	c.T92C	p.L31P	.	.	233	7	105	0	.	9497
PFKFB3	5209	bcgsc.ca	37	10	6265921	6265921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PFKFB3	NM_004566	exon12	c.A1214G	p.E405G	.	.	86	5	57	0	.	117
PFKFB3	5209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6258734	6258734	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PFKFB3	NM_004566	exon5	c.T432C	p.N144N	.	.	83	30	59	0	.	117
PGLYRP1	8993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46525997	46525997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PGLYRP1	NM_005091	exon1	c.T283A	p.Y95N	.	.	278	20	85	0	.	92
PHF15	23338	bcgsc.ca	37	5	133909377	133909377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PHF15	NM_015288	exon10	c.A1477G	p.K493E	.	.	100	6	63	0	.	90
PHGDH	26227	bcgsc.ca	37	1	120284444	120284444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PHGDH	NM_006623	exon10	c.T1133C	p.L378P	.	.	57	5	42	0	.	91
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111688738	111688738	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PHLDB2	NM_001134439	exon16	c.A3517T	p.T1173S	.	.	123	39	72	0	.	96
PIK3C2A	5286	bcgsc.ca	37	11	17136005	17136005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PIK3C2A	NM_002645	exon19	c.T3224C	p.L1075P	.	.	54	4	45	0	.	1310
PIK3CD	5293	bcgsc.ca	37	1	9784389	9784389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PIK3CD	NM_005026	exon22	c.T2774C	p.I925T	.	.	88	5	63	0	.	1311
PIPOX	51268	bcgsc.ca	37	17	27380008	27380008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PIPOX	NM_016518	exon3	c.A334G	p.R112G	.	.	120	6	89	0	.	90
PKNOX2	63876	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125237764	125237764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PKNOX2	NM_022062	exon5	c.C110T	p.P37L	.	.	93	20	59	0	.	93
PLCB1	23236	broad.mit.edu;bcgsc.ca	37	20	8713939	8713939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLCB1	NM_015192	exon19	c.T1943G	p.L648R	.	.	193	11	82	1	.	297
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	181677	181677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLEKHG4B	NM_052909	exon17	c.T3383C	p.F1128S	.	.	99	25	49	0	.	228
PLEKHM1	9842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	43552916	43552916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLEKHM1	NM_014798	exon4	c.C473A	p.A158D	.	.	114	8	71	0	.	90
PLEKHM2	23207	bcgsc.ca	37	1	16054088	16054088	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLEKHM2	NM_015164	exon9	c.A1521G	p.G507G	.	.	80	6	58	4	.	23
PNPLA7	375775	bcgsc.ca	37	9	140400210	140400210	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PNPLA7	NM_001098537	exon14	c.C1329T	p.S443S	.	.	168	7	78	0	.	91
PNPT1	87178	bcgsc.ca	37	2	55889160	55889160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PNPT1	NM_033109	exon14	c.T1178C	p.V393A	.	.	112	5	81	0	.	90
PNPT1	87178	bcgsc.ca	37	2	55908051	55908051	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PNPT1	NM_033109	exon6	c.T456C	p.V152V	.	.	278	7	116	0	.	90
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121207657	121207657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	POLQ	NM_199420	exon16	c.C4121T	p.P1374L	.	.	405	46	144	0	.	664
POMT2	29954	bcgsc.ca	37	14	77743783	77743783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	POMT2	NM_013382	exon21	c.C2189T	p.P730L	.	.	54	4	41	0	.	91
POTEG	404785	ucsc.edu	37	14	19553642	19553642	+	Missense_Mutation	SNP	A	A	G	rs57000026		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	POTEG	NM_001005356	exon1	c.A226G	p.S76G	.	.	270	133	96	17	G|1.000;|0.000	1
PPFIA1	8500	bcgsc.ca	37	11	70184503	70184503	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PPFIA1	NM_177423	exon13	c.A1515G	p.E505E	.	.	98	5	48	0	.	228
PPIAL4G	644591	ucsc.edu	37	1	143767643	143767643	+	Missense_Mutation	SNP	T	T	C	rs78862507	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001123068	exon1	c.A206G	p.H69R	.	.	247	93	87	0	T|0.667;C|0.333	.
PPP2R5A	5525	bcgsc.ca	37	1	212521754	212521754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PPP2R5A	NM_006243	exon7	c.C788A	p.P263Q	.	.	94	4	55	0	.	659
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32123651	32123651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PPT2	NM_138717	exon5	c.C455T	p.T152M	.	.	351	73	95	0	.	44
PRAMEF4	400735	ucsc.edu;bcgsc.ca	37	1	12943156	12943156	+	Silent	SNP	T	T	C	rs3121080	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PRAMEF4	NM_001009611	exon2	c.A60G	p.L20L	.	.	71	15	85	0	T|0.950;C|0.050	45
PRH2	5555	ucsc.edu	37	12	11083356	11083356	+	Missense_Mutation	SNP	A	A	G	rs116998526	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PRH2	NM_001110213	exon3	c.A196G	p.N66D	.	.	324	120	111	25	A|0.989;G|0.011	90
PRKCQ	5588	bcgsc.ca	37	10	6506280	6506280	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PRKCQ	NM_006257	exon13	c.A1440G	p.R480R	.	.	68	4	53	0	.	1380
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	16035130	16035130	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PROM1	NM_006017	exon4	c.T306C	p.I102I	.	.	172	46	75	0	.	207
PROSC	11212	ucsc.edu;bcgsc.ca	37	8	37633525	37633525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PROSC	NM_007198	exon7	c.C687A	p.F229L	.	.	45	6	26	0	.	90
PRPF4	9128	bcgsc.ca	37	9	116044951	116044951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PRPF4	NM_004697	exon4	c.G421T	p.G141C	.	.	129	5	87	0	.	93
PRPF8	10594	bcgsc.ca	37	17	1585280	1585280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PRPF8	NM_006445	exon5	c.A487G	p.R163G	.	.	85	4	44	0	.	525
PRR21	643905	bcgsc.ca	37	2	240982201	240982201	+	Missense_Mutation	SNP	A	A	G	rs73107452	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PRR21	NM_001080835	exon1	c.T199C	p.C67R	.	.	42	13	59	0	A|0.652;G|0.348	70
PRRT2	112476	bcgsc.ca	37	16	29824637	29824637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PRRT2	NM_001256442	exon2	c.A262G	p.S88G	.	.	50	4	40	0	.	68
PSG10P	653492	bcgsc.ca	37	19	43352278	43352278	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	136	32	52	0	.	.
PSG1	5669	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	43382236	43382236	+	Missense_Mutation	SNP	C	C	G	rs1058661		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PSG1	NM_001184826	exon2	c.G259C	p.E87Q	.	.	189	36	99	0	C|1.000;G|0.000	70
PTPN13	5783	bcgsc.ca	37	4	87687584	87687584	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTPN13	NM_006264	exon26	c.4187-1G>T	.	.	.	86	4	59	0	.	230
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75762179	75762180	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTPN9	NM_002833	exon12	c.1520_1521del	p.507_507del	.	.	125	37	62	0	.	226
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	198721876	198721876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTPRC	NM_002838	exon31	c.A3484G	p.S1162G	.	.	89	13	36	0	.	295
PTRF	284119	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	40574856	40574856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTRF	NM_012232	exon1	c.A260T	p.Q87L	.	.	98	24	44	0	.	153
RAG1	5896	bcgsc.ca	37	11	36597004	36597004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RAG1	NM_000448	exon2	c.A2150G	p.E717G	.	.	157	6	78	0	.	230
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204326584	204326584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RAPH1	NM_203365	exon7	c.C953T	p.A318V	.	.	474	24	114	0	.	1151
RASSF3	283349	bcgsc.ca	37	12	65088616	65088616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RASSF3	NM_178169	exon5	c.A641G	p.Q214R	.	.	80	4	41	0	.	839
RBM12B	389677	hgsc.bcm.edu	37	8	94747495	94747496	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RBM12B	NM_203390	exon3	c.1143_1144del	p.381_382del	.	.	358	14	103	3	.	90
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48388579	48388579	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RBP3	NM_002900	exon1	c.C2299T	p.L767L	.	.	90	38	24	0	.	153
RCN2	5955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77227917	77227917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RCN2	NM_002902	exon3	c.G301A	p.E101K	.	.	74	20	53	0	.	90
RFWD2	64326	bcgsc.ca	37	1	175957425	175957425	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RFWD2	NM_022457	exon17	c.T1971C	p.C657C	.	.	207	6	90	0	.	659
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56387953	56387953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RFX7	NM_022841	exon9	c.A1973G	p.K658R	.	.	151	55	87	0	.	90
RGMB	285704	bcgsc.ca	37	5	98115418	98115418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001012761	exon4	c.T394C	p.C132R	.	.	87	5	47	0	.	.
RGPD3	653489	bcgsc.ca	37	2	107032417	107032417	+	Silent	SNP	A	A	G	rs9653483	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RGPD3	NM_001144013	exon21	c.T4953C	p.T1651T	.	.	861	671	150	33	A|0.835;G|0.165	23
RHAG	6005	broad.mit.edu	37	6	49604426	49604426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RHAG	NM_000324	exon1	c.G100A	p.E34K	.	.	270	5	103	1	.	154
RHOJ	57381	bcgsc.ca	37	14	63757625	63757625	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RHOJ	NM_020663	exon5	c.A528G	p.S176S	.	.	133	6	90	0	.	227
RIMBP2	23504	bcgsc.ca	37	12	130912750	130912750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RIMBP2	NM_015347	exon12	c.A2335G	p.S779G	.	.	89	4	42	0	.	142
RNF123	63891	bcgsc.ca	37	3	49735353	49735353	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RNF123	NM_022064	exon6	c.T378C	p.S126S	.	.	87	4	50	0	.	584
RNF150	57484	bcgsc.ca	37	4	141870456	141870456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RNF150	NM_020724	exon3	c.A806G	p.K269R	.	.	109	6	63	0	.	227
RNU6-76	100873777	bcgsc.ca	37	16	33490488	33490488	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	25	6	28	0	.	.
ROBO2	6092	broad.mit.edu	37	3	77671428	77671428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ROBO2	NM_002942	exon23	c.G3605A	p.G1202D	.	.	233	6	88	1	.	328
RP1L1	94137	bcgsc.ca	37	8	10467605	10467605	+	Missense_Mutation	SNP	C	C	T	rs61503212		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RP1L1	NM_178857	exon4	c.G4003A	p.G1335R	.	.	272	12	151	0	C|0.500;T|0.500	139
RP1L1	94137	bcgsc.ca	37	8	10467702	10467702	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RP1L1	NM_178857	exon4	c.A3906G	p.Q1302Q	.	.	122	49	77	0	.	139
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10467681	10467686	+	In_Frame_Del	DEL	TCCTTC	TCCTTC	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TCCTTC	TCCTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RP1L1	NM_178857	exon4	c.3922_3927del	p.1308_1309del	.	.	129	0	79	0	.	139
RPS12	6206	bcgsc.ca	37	6	133138678	133138678	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RPS12	NM_001016	exon6	c.A396G	p.K132K	.	.	97	4	46	0	.	90
RPS13	6207	bcgsc.ca	37	11	17096659	17096659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RPS13	NM_001017	exon5	c.C407T	p.P136L	.	.	64	4	37	0	.	90
RPS6KA2	6196	bcgsc.ca	37	6	166864607	166864607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RPS6KA2	NM_001006932	exon14	c.T1214C	p.V405A	.	.	133	6	52	0	.	1405
SASH1	23328	bcgsc.ca	37	6	148856017	148856017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SASH1	NM_015278	exon16	c.A2075G	p.E692G	.	.	154	5	71	0	.	90
SCARA5	286133	bcgsc.ca	37	8	27823951	27823951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SCARA5	NM_173833	exon3	c.T221C	p.V74A	.	.	75	4	81	0	.	91
SCG3	29106	bcgsc.ca	37	15	51993400	51993400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SCG3	NM_013243	exon10	c.A1166G	p.D389G	.	.	92	5	57	0	.	91
SCN8A	6334	hgsc.bcm.edu	37	12	52159754	52159755	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SCN8A	NM_001177984	exon16	c.2844_2845insG	p.A948fs	.	.	260	23	83	0	.	29
SDHAP2	727956	ucsc.edu	37	3	195395399	195395399	+	RNA	SNP	G	G	A	rs62287990	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	328	104	101	31	G|0.731;A|0.269	.
SDHAP2	727956	ucsc.edu	37	3	195395402	195395402	+	RNA	SNP	C	C	A	rs2688572	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	335	109	102	34	C|0.500;A|0.500	.
SEC16A	9919	bcgsc.ca	37	9	139341409	139341409	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	72	4	48	0	.	.
SEMA4B	10509	bcgsc.ca	37	15	90771568	90771568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SEMA4B	NM_020210	exon15	c.T2207C	p.L736S	.	.	123	5	62	0	.	272
SERAC1	84947	bcgsc.ca	37	6	158535971	158535971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SERAC1	NM_032861	exon15	c.T1534C	p.S512P	.	.	88	5	56	0	.	90
SETBP1	26040	bcgsc.ca	37	18	42643125	42643125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SETBP1	NM_015559	exon6	c.C4253T	p.T1418I	.	.	61	4	38	0	.	155
SEZ6L	23544	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26688528	26688528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SEZ6L	NM_021115	exon2	c.T251C	p.V84A	.	.	40	10	23	0	.	95
SF3A3	10946	bcgsc.ca	37	1	38435025	38435025	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SF3A3	NM_006802	exon15	c.1281+1G>A	.	.	.	92	4	56	0	.	90
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	13948074	13948074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SGCZ	NM_139167	exon8	c.T817A	p.S273T	.	.	60	26	52	0	.	93
SGOL2	151246	bcgsc.ca	37	2	201437667	201437667	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SGOL2	NM_001160046	exon7	c.T2598C	p.D866D	.	.	94	5	57	0	.	94
SHC1	6464	bcgsc.ca	37	1	154941293	154941293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SHC1	NM_183001	exon3	c.T584C	p.V195A	.	.	136	5	49	0	.	847
SHMT1	6470	bcgsc.ca	37	17	18232161	18232161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SHMT1	NM_004169	exon12	c.T1355C	p.L452P	.	.	86	5	40	0	.	91
SIGLEC9	27180	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51633303	51633303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SIGLEC9	NM_014441	exon7	c.C1359A	p.D453E	.	.	110	59	42	1	.	91
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72054832	72054832	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SIPA1L1	NM_015556	exon2	c.A243T	p.A81A	.	.	103	46	63	0	.	156
SIRT1	23411	bcgsc.ca	37	10	69669128	69669128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SIRT1	NM_012238	exon7	c.A1286G	p.D429G	.	.	95	4	75	0	.	226
SKAP1	8631	bcgsc.ca	37	17	46259814	46259814	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SKAP1	NM_003726	exon8	c.A573G	p.T191T	.	.	117	5	73	0	.	90
SKIDA1	387640	bcgsc.ca	37	10	21806588	21806588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_207371	exon4	c.A164G	p.K55R	.	.	271	7	110	0	.	.
SLAMF6	114836	bcgsc.ca	37	1	160456504	160456504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLAMF6	NM_001184714	exon8	c.T992C	p.V331A	.	.	79	4	40	0	.	228
SLC12A5	57468	bcgsc.ca	37	20	44663610	44663610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC12A5	NM_001134771	exon2	c.A145G	p.S49G	.	.	150	5	66	0	.	156
SLC12A9	56996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100452001	100452001	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC12A9	NM_020246	exon2	c.181+1G>T	.	.	.	499	133	158	0	.	90
SLC15A1	6564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99371494	99371494	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC15A1	NM_005073	exon8	c.C637T	p.L213L	.	.	53	18	25	0	.	91
SLC19A3	80704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228567037	228567037	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC19A3	.	.	.	.	.	.	53	6	33	0	.	92
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15063807	15063807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC1A6	NM_005071	exon8	c.A1432G	p.I478V	.	.	217	42	55	0	.	186
SLC1A7	6512	bcgsc.ca	37	1	53558262	53558262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC1A7	NM_006671	exon7	c.T995C	p.L332P	.	.	87	4	50	0	.	155
SLC22A15	55356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116563474	116563474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC22A15	NM_018420	exon4	c.A566G	p.E189G	.	.	366	150	136	0	.	67
SLC23A3	151295	bcgsc.ca	37	2	220032968	220032968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC23A3	NM_144712	exon6	c.A716G	p.E239G	.	.	70	4	40	0	.	44
SLC28A3	64078	bcgsc.ca	37	9	86893261	86893261	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	SLC28A3,larynx,carcinoma,0	SLC28A3	NM_001199633	exon19	c.1950-2A>G	.	.	.	73	4	47	0	.	94
SLC2A5	6518	bcgsc.ca	37	1	9117534	9117534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC2A5	NM_003039	exon3	c.T266C	p.V89A	.	.	64	4	48	0	.	517
SLC35G5	83650	ucsc.edu	37	8	11189535	11189535	+	Missense_Mutation	SNP	T	T	C	rs12681991	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_054028	exon1	c.T920C	p.L307P	.	.	122	27	65	9	T|0.557;C|0.443	.
SLFN14	342618	bcgsc.ca	37	17	33879780	33879780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLFN14	NM_001129820	exon3	c.T1873C	p.C625R	.	.	152	5	89	0	.	1
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11141502	11141502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	SMARCA4,NS,carcinoma,+1	SMARCA4	NM_003072	exon25	c.G3479A	p.G1160E	.	.	54	31	28	0	.	1523
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	144467138	144467138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SMARCA5	NM_003601	exon19	c.A2458G	p.I820V	.	.	243	82	102	0	.	227
SMCHD1	23347	bcgsc.ca	37	18	2750450	2750450	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SMCHD1	NM_015295	exon32	c.T4110C	p.R1370R	.	.	118	5	93	0	.	46
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	2795979	2795979	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SMCHD1	NM_015295	exon46	c.A5752T	p.K1918X	.	.	281	80	130	0	.	46
SORL1	6653	broad.mit.edu;bcgsc.ca	37	11	121421354	121421354	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SORL1	NM_003105	exon16	c.A2241G	p.G747G	.	.	95	7	57	1	.	228
SOX7	83595	bcgsc.ca	37	8	10583438	10583438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SOX7	NM_031439	exon2	c.A977G	p.D326G	.	.	68	4	47	0	.	522
SPATA12	353324	broad.mit.edu;bcgsc.ca	37	3	57108184	57108184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SPATA12	NM_181727	exon2	c.G462T	p.E154D	.	.	132	9	63	0	.	90
SPATA31C2	645961	bcgsc.ca	37	9	90746873	90746873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001166137	exon4	c.C1079T	p.S360F	.	.	139	37	81	0	.	.
SPDYE1	285955	bcgsc.ca	37	7	44046934	44046934	+	Missense_Mutation	SNP	G	G	A	rs200388629	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	SPDYE1,NS,carcinoma,-2	SPDYE1	NM_175064	exon5	c.G700A	p.G234R	.	.	299	17	130	2	G|0.981;A|0.019	91
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228884727	228884727	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SPHKAP	NM_030623	exon7	c.T843A	p.I281I	.	.	1095	145	187	0	.	167
SPINK5	11005	bcgsc.ca	37	5	147499688	147499688	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SPINK5	NM_001127699	exon25	c.T2430C	p.C810C	.	.	89	5	63	0	.	138
SPN	6693	bcgsc.ca	37	16	29675650	29675650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SPN	NM_001030288	exon2	c.A601G	p.T201A	.	.	52	4	38	0	.	514
SPTA1	6708	bcgsc.ca	37	1	158595959	158595959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SPTA1	NM_003126	exon42	c.T5887C	p.F1963L	.	.	242	7	93	0	.	142
SRFBP1	153443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121358098	121358098	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SRFBP1	NM_152546	exon7	c.C1101G	p.S367S	.	.	110	35	93	0	.	90
SRP72	6731	bcgsc.ca	37	4	57335861	57335861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SRP72	NM_006947	exon2	c.A152G	p.K51R	.	.	101	5	62	0	.	116
SRRT	51593	ucsc.edu;bcgsc.ca	37	7	100485882	100485882	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SRRT	NM_015908	exon19	c.T2433C	p.G811G	.	.	40	4	26	0	.	92
SSMEM1	0	broad.mit.edu	37	7	129847926	129847926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_145268	exon1	c.C176T	p.S59F	.	.	231	5	111	0	.	.
STAG3	10734	broad.mit.edu	37	7	99795743	99795743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STAG3	NM_012447	exon12	c.T1198C	p.Y400H	.	.	777	12	180	0	.	543
STEAP1B	256227	ucsc.edu	37	7	22533119	22533119	+	Missense_Mutation	SNP	C	C	G	rs200585731	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001164460	exon3	c.G421C	p.V141L	.	.	241	51	109	33	C|0.959;G|0.041	.
STK32B	55351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5170120	5170120	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STK32B	NM_018401	exon3	c.T203A	p.V68D	.	.	176	34	56	0	.	1002
STOX2	56977	bcgsc.ca	37	4	184930695	184930695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STOX2	NM_020225	exon3	c.C704A	p.P235Q	.	.	75	4	70	0	.	22
STRAP	11171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	16035698	16035698	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STRAP	NM_007178	exon1	c.57delT	p.D19fs	.	.	69	28	33	0	.	228
STT3A	3703	bcgsc.ca	37	11	125472269	125472269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STT3A	NM_152713	exon4	c.A221G	p.D74G	.	.	221	9	104	0	.	90
STX6	10228	bcgsc.ca	37	1	180971829	180971829	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STX6	NM_005819	exon3	c.T213C	p.V71V	.	.	138	5	54	0	.	91
SUPT16H	11198	bcgsc.ca	37	14	21827750	21827750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SUPT16H	NM_007192	exon19	c.A2194G	p.K732E	.	.	83	4	64	0	.	90
SUPT16H	11198	bcgsc.ca	37	14	21834641	21834641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SUPT16H	NM_007192	exon8	c.A1003G	p.K335E	.	.	198	6	107	0	.	90
SUSD1	64420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114820918	114820918	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SUSD1	NM_022486	exon14	c.T1899A	p.S633S	.	.	97	28	55	0	.	90
SYCP2L	221711	bcgsc.ca	37	6	10926654	10926654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SYCP2L	NM_001040274	exon16	c.A1301G	p.E434G	.	.	91	5	38	0	.	24
SYNE2	23224	broad.mit.edu	37	14	64488644	64488644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SYNE2	NM_182914	exon37	c.A5422G	p.T1808A	.	.	155	4	100	0	.	164
SYNJ2BP-COX16	0	bcgsc.ca	37	14	70842413	70842413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001202547	exon3	c.T277C	p.S93P	.	.	76	4	57	0	.	.
SZT2	23334	bcgsc.ca	37	1	43870149	43870149	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SZT2	NM_015284	exon4	c.C426T	p.C142C	.	.	80	4	48	0	.	144
TAF4B	6875	bcgsc.ca	37	18	23866170	23866170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TAF4B	NM_005640	exon7	c.A1297G	p.T433A	.	.	35	4	27	0	.	71
TAOK1	57551	bcgsc.ca	37	17	27809251	27809251	+	Silent	SNP	A	A	G	rs79855525		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TAOK1	NM_025142	exon8	c.A600G	p.G200G	.	.	181	6	83	0	.	521
TBC1D9	23158	bcgsc.ca	37	4	141578303	141578303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TBC1D9	NM_015130	exon13	c.T2285C	p.V762A	.	.	78	4	42	0	.	23
TBCE	6905	bcgsc.ca	37	1	235582872	235582872	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TBCE	NM_003193	exon5	c.T456C	p.C152C	.	.	192	6	66	0	.	90
TBR1	10716	bcgsc.ca	37	2	162274196	162274196	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TBR1	NM_006593	exon2	c.T702C	p.F234F	.	.	210	7	119	0	.	91
TBX10	347853	bcgsc.ca	37	11	67399797	67399797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TBX10	NM_005995	exon7	c.G860A	p.R287K	.	.	115	5	59	0	.	90
TCF3	6929	hgsc.bcm.edu	37	19	1619350	1619350	+	Missense_Mutation	SNP	C	C	T	rs1052692	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TCF3	NM_003200	exon15	c.G1291A	p.G431S	.	.	13	9	1	0	C|0.901;T|0.099	721
TCHH	7062	bcgsc.ca	37	1	152083665	152083665	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TCHH	NM_007113	exon3	c.T2028G	p.H676Q	.	.	340	20	94	1	.	72
TCHH	7062	bcgsc.ca	37	1	152083818	152083820	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TCHH	NM_007113	exon3	c.1873_1875del	p.625_625del	.	.	289	53	94	0	.	72
TCHH	7062	hgsc.bcm.edu	37	1	152083851	152083851	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TCHH	NM_007113	exon3	c.G1842A	p.E614E	.	.	277	35	89	0	.	72
TDRD3	81550	bcgsc.ca	37	13	61083908	61083908	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TDRD3	NM_001146070	exon9	c.A870G	p.K290K	.	.	81	4	51	0	.	516
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179621325	179621325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TDRD5	NM_173533	exon13	c.G2153A	p.R718H	.	.	239	23	106	0	.	94
TDRD9	122402	bcgsc.ca	37	14	104481082	104481082	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TDRD9	NM_153046	exon21	c.A2127G	p.E709E	.	.	75	4	43	0	.	70
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123517526	123517526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001163278	exon30	c.T7255A	p.Y2419N	.	.	133	28	97	0	.	.
TFAP4	7023	bcgsc.ca	37	16	4312369	4312369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TFAP4	NM_003223	exon3	c.A310G	p.T104A	.	.	131	6	95	0	.	91
TFCP2	7024	broad.mit.edu	37	12	51510178	51510178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TFCP2	NM_001173452	exon4	c.A377G	p.D126G	.	.	221	5	116	0	.	91
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133961019	133961019	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TG	NM_003235	exon27	c.5234-2A>G	.	.	.	266	63	90	0	.	145
THOC2	57187	bcgsc.ca	37	X	122778683	122778683	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	THOC2	NM_001081550	exon14	c.T1506C	p.A502A	.	.	229	6	148	0	.	133
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129389440	129389440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TMCC1	NM_001017395	exon4	c.C1244A	p.P415Q	.	.	269	32	119	0	.	91
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7339378	7339378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TMEM102	NM_178518	exon2	c.C188T	p.A63V	.	.	132	46	46	0	.	90
TMEM222	84065	bcgsc.ca	37	1	27660470	27660470	+	Silent	SNP	T	T	C	rs151104970		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TMEM222	NM_032125	exon4	c.T333C	p.A111A	.	.	109	5	61	0	T|1.000;C|0.000	90
TMEM260	0	bcgsc.ca	37	14	57114107	57114107	+	Silent	SNP	T	T	C	rs142013186		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_017799	exon16	c.T2016C	p.R672R	.	.	62	4	52	0	T|1.000;C|0.000	.
TMF1	7110	broad.mit.edu	37	3	69074815	69074815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TMF1	NM_007114	exon15	c.G2908A	p.G970R	.	.	326	7	127	0	.	90
TNN	63923	bcgsc.ca	37	1	175046724	175046724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TNN	NM_022093	exon2	c.A170G	p.Q57R	.	.	134	7	64	0	.	138
TNXB	7148	bcgsc.ca	37	6	32036253	32036253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TNXB	NM_019105	exon17	c.T6134C	p.L2045P	.	.	194	6	69	0	.	90
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	10921977	10921977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TPTE	NM_199261	exon18	c.T1046C	p.V349A	.	.	321	13	149	0	.	344
TRIM33	51592	hgsc.bcm.edu	37	1	114968116	114968118	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TRIM33	NM_033020	exon9	c.1648_1650del	p.550_550del	.	.	1059	15	189	4	.	1351
TRIP11	9321	bcgsc.ca	37	14	92442476	92442476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TRIP11	NM_004239	exon17	c.A5318G	p.N1773S	.	.	92	5	75	0	.	1400
TRPM2	7226	bcgsc.ca	37	21	45810873	45810873	+	Missense_Mutation	SNP	C	C	A	rs182004440	by1000genomes;alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TRPM2	NM_003307	exon10	c.C1405A	p.R469S	.	.	70	4	34	0	C|0.999;T|0.000	92
TSR1	55720	bcgsc.ca	37	17	2232725	2232725	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TSR1	NM_018128	exon11	c.T1815C	p.T605T	.	.	80	4	59	0	.	91
TTN	7273	bcgsc.ca	37	2	179459232	179459232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TTN	NM_001267550	exon296	c.A57989G	p.K19330R	.	.	203	6	104	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179548789	179548789	+	Missense_Mutation	SNP	C	C	T	rs72650032	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TTN	NM_001267550	exon133	c.G32743A	p.A10915T	.	.	181	115	91	0	C|0.143;G|0.857	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179575865	179575865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TTN	NM_001267550	exon97	c.C28098G	p.S9366R	.	.	77	13	70	0	.	636
TUBGCP3	10426	bcgsc.ca	37	13	113176812	113176812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TUBGCP3	NM_006322	exon14	c.T1567C	p.F523L	.	.	95	5	60	0	.	90
TXLNG	55787	bcgsc.ca	37	X	16859868	16859868	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TXLNG	NM_018360	exon10	c.G1566A	p.P522P	.	.	92	4	70	0	.	130
TYK2	7297	ucsc.edu	37	19	10476288	10476288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TYK2	NM_003331	exon7	c.G916A	p.E306K	.	.	55	3	17	0	.	1009
UBA1	7317	bcgsc.ca	37	X	47070285	47070285	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBA1	NM_153280	exon19	c.T2244C	p.C748C	.	.	103	6	89	0	.	227
UBE2G2	7327	bcgsc.ca	37	21	46207875	46207875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBE2G2	NM_003343	exon3	c.A85G	p.M29V	.	.	198	6	119	0	.	229
UBE2H	7328	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129520790	129520790	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBE2H	NM_182697	exon2	c.T75C	p.V25V	.	.	111	36	61	1	.	226
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103293516	103293516	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBR5	NM_015902	exon42	c.5927+1G>A	.	.	.	727	219	146	0	.	761
UBXN2A	165324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24194229	24194229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBXN2A	NM_181713	exon3	c.A125T	p.E42V	.	.	106	64	69	0	.	90
UBXN7	26043	bcgsc.ca	37	3	196083605	196083605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBXN7	NM_015562	exon11	c.A1421G	p.E474G	.	.	232	7	103	1	.	71
UNC13B	10497	bcgsc.ca	37	9	35237753	35237753	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UNC13B	NM_006377	exon5	c.T324C	p.D108D	.	.	89	4	58	0	.	157
USP12	219333	bcgsc.ca	37	13	27679894	27679894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	USP12	NM_182488	exon3	c.T317C	p.F106S	.	.	89	4	70	0	.	522
USP24	23358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	55573092	55573092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	USP24	NM_015306	exon40	c.G4582A	p.E1528K	.	.	80	8	68	0	.	521
USP32	84669	bcgsc.ca	37	17	58275735	58275735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	USP32	NM_032582	exon27	c.T3320C	p.V1107A	.	.	272	7	123	0	.	704
USP38	84640	bcgsc.ca	37	4	144116867	144116867	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	USP38	NM_032557	exon3	c.819-2A>G	.	.	.	66	4	46	0	.	660
USP7	7874	bcgsc.ca	37	16	9015061	9015061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	USP7	NM_003470	exon4	c.T475C	p.F159L	.	.	97	4	80	0	.	661
USPL1	10208	bcgsc.ca	37	13	31232735	31232735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	USPL1	NM_005800	exon9	c.C2521T	p.H841Y	.	.	71	4	38	0	.	524
UTP20	27340	bcgsc.ca	37	12	101679611	101679611	+	Missense_Mutation	SNP	A	A	G	rs189494608		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UTP20	NM_014503	exon4	c.A278G	p.K93R	.	.	86	4	57	0	A|0.999;G|0.000	155
VAPB	9217	bcgsc.ca	37	20	57019162	57019162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VAPB	NM_001195677	exon3	c.A241G	p.S81G	.	.	224	6	83	0	.	226
VN1R4	317703	ucsc.edu	37	19	53770261	53770261	+	Missense_Mutation	SNP	T	T	C	rs56873934	bycluster;byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VN1R4	NM_173857	exon1	c.A658G	p.N220D	.	.	119	56	58	12	T|0.500;C|0.500	92
VPS13C	54832	bcgsc.ca	37	15	62204101	62204101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VPS13C	NM_020821	exon63	c.G8653A	p.G2885S	.	.	87	4	70	0	.	92
VPS13C	54832	bcgsc.ca	37	15	62312693	62312693	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VPS13C	NM_020821	exon9	c.A669G	p.G223G	.	.	67	6	35	0	.	92
VRK1	7443	bcgsc.ca	37	14	97312442	97312442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VRK1	NM_003384	exon4	c.A227G	p.D76G	.	.	228	6	127	0	.	358
VWA3B	200403	hgsc.bcm.edu	37	2	98797558	98797559	+	Frame_Shift_Ins	INS	-	-	T	rs143566322	by1000genomes	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VWA3B	NM_144992	exon9	c.1194_1195insT	p.G398fs	.	.	171	15	60	0	.	139
VWA8	23078	bcgsc.ca	37	13	42352148	42352148	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_015058	exon20	c.A2322G	p.G774G	.	.	54	4	50	0	.	.
VWF	7450	broad.mit.edu;ucsc.edu	37	12	6128892	6128892	+	Missense_Mutation	SNP	T	T	G	rs61749368		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VWF	NM_000552	exon28	c.A3692C	p.N1231T	.	.	29	10	13	0	.	163
VWF	7450	broad.mit.edu;ucsc.edu	37	12	6128898	6128898	+	Missense_Mutation	SNP	A	A	C	rs61749367		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	VWF	NM_000552	exon28	c.T3686G	p.V1229G	.	.	20	7	13	0	.	163
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128474768	128474768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	WDR33	NM_018383	exon17	c.C2830A	p.P944T	.	.	152	97	60	0	.	90
WDR43	23160	bcgsc.ca	37	2	29140824	29140824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	WDR43	NM_015131	exon6	c.T812C	p.V271A	.	.	121	5	61	0	.	69
WRN	7486	bcgsc.ca	37	8	31030534	31030534	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	WRN	NM_000553	exon35	c.A4215G	p.R1405R	.	.	64	4	53	0	.	1036
XIRP2	129446	bcgsc.ca	37	2	168107704	168107704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	XIRP2	NM_152381	exon9	c.A9802G	p.R3268G	.	.	78	4	45	1	.	104
XRN1	54464	broad.mit.edu	37	3	142030440	142030440	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	XRN1	NM_019001	exon42	c.T5034C	p.S1678S	.	.	250	5	110	0	.	93
YTHDC2	64848	bcgsc.ca	37	5	112901625	112901625	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	YTHDC2	NM_022828	exon21	c.A2751G	p.R917R	.	.	134	6	99	1	.	92
ZBTB34	403341	bcgsc.ca	37	9	129642096	129642096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZBTB34	NM_001099270	exon2	c.T406C	p.S136P	.	.	85	4	66	1	.	69
ZC3H7A	29066	bcgsc.ca	37	16	11852310	11852310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZC3H7A	NM_014153	exon20	c.G2405T	p.W802L	.	.	58	4	40	0	.	94
ZCCHC6	79670	broad.mit.edu	37	9	88938094	88938094	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZCCHC6	NM_024617	exon13	c.A2571G	p.E857E	.	.	328	6	130	0	.	92
ZDHHC11	79844	ucsc.edu	37	5	837556	837556	+	Missense_Mutation	SNP	T	T	G	rs28449575	byfrequency	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZDHHC11	NM_024786	exon6	c.A824C	p.N275T	.	.	894	239	168	29	T|0.617;G|0.383	92
ZFP64	55734	bcgsc.ca	37	20	50705170	50705170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZFP64	NM_199427	exon8	c.A989G	p.H330R	.	.	72	4	44	0	.	155
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	106331179	106331179	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZFPM2	NM_012082	exon1	c.C10T	p.R4X	.	.	205	30	37	0	.	139
ZFR	51663	bcgsc.ca	37	5	32387796	32387796	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZFR	NM_016107	exon14	c.A2358G	p.K786K	.	.	144	5	99	0	.	90
ZNF100	163227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21910792	21910792	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF100	NM_173531	exon6	c.323-1G>C	.	.	.	77	8	55	0	.	90
ZNF189	7743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104171115	104171115	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF189	NM_003452	exon3	c.G1065A	p.R355R	.	.	81	19	52	0	.	229
ZNF202	7753	bcgsc.ca	37	11	123598267	123598267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF202	NM_003455	exon8	c.T869C	p.V290A	.	.	151	5	88	0	.	91
ZNF208	7757	broad.mit.edu	37	19	22154328	22154328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF208	NM_007153	exon4	c.A3508G	p.K1170E	.	.	26	6	13	0	.	7
ZNF284	342909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44590091	44590091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001037813	exon5	c.A460C	p.K154Q	.	.	95	9	63	0	.	.
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44890916	44890916	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF285	NM_152354	exon4	c.A1491G	p.S497S	.	.	215	116	105	0	.	94
ZNF311	282890	bcgsc.ca	37	6	28964080	28964080	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF311	NM_001010877	exon7	c.A699G	p.K233K	.	.	182	6	93	0	.	22
ZNF404	342908	bcgsc.ca	37	19	44378150	44378150	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001033719	exon2	c.A207G	p.T69T	.	.	80	4	59	0	.	.
ZNF407	55628	bcgsc.ca	37	18	72343290	72343290	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF407	NM_001146190	exon1	c.T315C	p.G105G	.	.	123	5	78	0	.	92
ZNF502	91392	bcgsc.ca	37	3	44763161	44763161	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF502	NM_001134440	exon4	c.T852C	p.H284H	.	.	74	4	57	0	.	90
ZNF512B	57473	bcgsc.ca	37	20	62595742	62595742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF512B	NM_020713	exon7	c.A1264G	p.R422G	.	.	174	6	74	0	.	90
ZNF519	162655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14105690	14105690	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF519	NM_145287	exon3	c.G849A	p.Q283Q	.	.	42	7	52	0	.	90
ZNF670-ZNF695	0	ucsc.edu	37	1	247108913	247108913	+	RNA	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	31	6	16	0	.	.
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23927977	23927977	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_138286	exon4	c.A375T	p.G125G	.	.	118	48	74	0	.	.
ZNF681	148213	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23926971	23926971	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_138286	exon4	c.C1381G	p.Q461E	.	.	69	10	35	0	.	.
ZNF695	57116	ucsc.edu	37	1	247150232	247150232	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	225	35	83	0	.	.
ZNF721	170960	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	436527	436527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF721	NM_133474	exon3	c.C1729G	p.P577A	.	.	177	28	70	1	.	47
ZNF726	730087	bcgsc.ca	37	19	24116107	24116107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001244038	exon4	c.T1189C	p.Y397H	.	.	51	4	37	0	.	.
ZNF728	388523	broad.mit.edu;ucsc.edu	37	19	23159320	23159320	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001267716	exon4	c.A819G	p.E273E	.	.	32	18	23	0	.	.
ZNF790	388536	ucsc.edu	37	19	37310972	37310972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF790	NM_206894	exon5	c.G274A	p.G92S	.	.	30	4	20	0	.	92
ZNF814	730051	broad.mit.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	G	T	rs201682072		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001144989	exon3	c.C1212A	p.D404E	.	.	395	42	126	0	.	.
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146686272	146686272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF827	NM_178835	exon13	c.T3098A	p.M1033K	.	.	104	20	62	0	.	22
ZNF844	284391	bcgsc.ca	37	19	12186715	12186715	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001136501	exon4	c.A780G	p.K260K	.	.	92	5	43	0	.	.
ZNF98	148198	bcgsc.ca	37	19	22585620	22585620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF98	NM_001098626	exon3	c.A224G	p.K75R	.	.	164	6	78	0	.	24
ZSCAN1	284312	broad.mit.edu	37	19	58563914	58563914	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZSCAN1	NM_182572	exon5	c.T522C	p.S174S	.	.	120	11	35	0	.	92
ZSWIM2	151112	broad.mit.edu	37	2	187702247	187702247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZSWIM2	NM_182521	exon5	c.A529G	p.M177V	.	.	163	8	91	1	.	93
ZWINT	11130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	58118598	58118598	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZWINT	NM_007057	exon6	c.G591A	p.Q197Q	.	.	272	49	120	0	.	227
ZZEF1	23140	bcgsc.ca	37	17	4008104	4008104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZZEF1	NM_015113	exon8	c.T1396C	p.C466R	.	.	49	4	40	0	.	93
TPSD1	23430	bcgsc.ca	37	16	1306346	1306347	+	Missense_Mutation	DNP	CG	CG	GC	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	p.P22R	.	.	.	.	.	.	.	
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525290	248525291	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	p.V137L	.	.	.	.	.	.	.	
UGT2B28	54490	bcgsc.ca	37	4	70160342	70160343	+	Missense_Mutation	DNP	TG	TG	CC	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	p.C469P	.	.	.	.	.	.	.	
CTD-2089O24.1	0	bcgsc.ca	37	5	110284399	110284400	+	RNA	DNP	CT	CT	TC	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	.	.	.	.	.	.	.	.	
RP1L1	94137	ucsc.edu	37	8	10467636	10467637	+	Missense_Mutation	DNP	TT	TT	CC	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	.	.	.	p.E1324G	.	.	.	.	.	.	.	
