Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AASDH	132949	bcgsc.ca	37	4	57250340	57250340	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	AASDH	NM_181806	exon2	c.T126C	p.A42A	.	.	277	7	214	0	.	94
AASDH	132949	broad.mit.edu	37	4	57204655	57204655	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	AASDH	NM_181806	exon15	c.T3210C	p.S1070S	.	.	641	8	398	1	.	94
ABCA6	23460	hgsc.bcm.edu;bcgsc.ca	37	17	67110945	67110945	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ABCA6	NM_080284	exon13	c.1740delT	p.F580fs	.	.	286	81	194	0	.	159
ABCB5	340273	bcgsc.ca	37	7	20782644	20782644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ABCB5	NM_001163941	exon25	c.A3169G	p.S1057G	.	.	285	7	187	0	.	158
ABCB5	340273	broad.mit.edu	37	7	20662932	20662932	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ABCB5	NM_001163941	exon2	c.A24G	p.E8E	.	.	651	9	408	2	.	158
ABCD3	5825	broad.mit.edu	37	1	94955355	94955355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ABCD3	NM_002858	exon14	c.T1232C	p.V411A	.	.	403	7	273	0	.	91
ABCD4	5826	bcgsc.ca	37	14	74754582	74754582	+	Missense_Mutation	SNP	C	C	T	rs200395991		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ABCD4	NM_005050	exon17	c.G1567A	p.V523I	.	.	54	4	56	1	C|0.999;T|0.000	292
ABHD16B	140701	bcgsc.ca	37	20	62493417	62493417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ABHD16B	NM_080622	exon1	c.T524C	p.I175T	.	.	112	6	113	1	.	90
ACSL3	2181	bcgsc.ca	37	2	223806320	223806320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ACSL3	NM_203372	exon16	c.A2111G	p.E704G	.	.	61	4	43	0	.	228
ADAM30	11085	broad.mit.edu	37	1	120436653	120436653	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ADAM30	NM_021794	exon1	c.A2307G	p.E769E	.	.	1483	11	1169	1	.	228
AFTPH	54812	bcgsc.ca	37	2	64779477	64779477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	AFTPH	NM_017657	exon2	c.A869G	p.D290G	.	.	123	6	82	0	.	70
AHSA1	10598	bcgsc.ca	37	14	77928530	77928530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	AHSA1	NM_012111	exon3	c.A299G	p.K100R	.	.	216	6	186	0	.	226
AK7	122481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96875279	96875279	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	AK7	NM_152327	exon4	c.498+1G>A	.	.	.	61	8	77	0	.	228
ANGPTL5	253935	bcgsc.ca	37	11	101773411	101773411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ANGPTL5	NM_178127	exon6	c.A481G	p.T161A	.	.	130	6	97	0	.	91
ANKAR	150709	bcgsc.ca	37	2	190606164	190606164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ANKAR	NM_144708	exon20	c.C3797T	p.S1266L	.	.	401	88	278	4	.	72
ANKK1	255239	bcgsc.ca	37	11	113270519	113270519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ANKK1	NM_178510	exon8	c.C1828T	p.H610Y	.	.	62	4	54	0	.	628
ANKLE1	126549	ucsc.edu;bcgsc.ca	37	19	17396254	17396254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_152363	exon7	c.T1391C	p.L464P	.	.	42	4	46	0	.	.
ANKRD12	23253	broad.mit.edu;bcgsc.ca	37	18	9258431	9258431	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ANKRD12	NM_015208	exon9	c.C5166A	p.A1722A	.	.	107	5	67	0	.	92
ANKRD24	170961	ucsc.edu;bcgsc.ca	37	19	4216326	4216326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ANKRD24	NM_133475	exon17	c.A1316G	p.E439G	.	.	40	4	49	0	.	68
ANKRD66	100287718	bcgsc.ca	37	6	46719711	46719711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001162435	exon3	c.T191C	p.M64T	.	.	71	4	48	0	.	.
AP4E1	23431	bcgsc.ca	37	15	51285735	51285735	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	AP4E1	NM_007347	exon17	c.T2259C	p.V753V	.	.	130	6	94	0	.	90
APTX	54840	bcgsc.ca	37	9	32974500	32974500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	APTX	NM_001195248	exon7	c.A872G	p.K291R	.	.	89	4	67	0	.	91
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73048919	73048919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001080479	exon4	c.G367T	p.A123S	.	.	154	36	97	0	.	.
ASAP3	55616	bcgsc.ca	37	1	23760004	23760004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ASAP3	NM_017707	exon21	c.A2041G	p.T681A	.	.	132	11	82	4	.	155
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155308071	155308071	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ASH1L	NM_018489	exon27	c.A8612C	p.N2871T	.	.	192	57	127	0	.	234
ASRGL1	80150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62159568	62159568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ASRGL1	NM_001083926	exon7	c.G739A	p.A247T	.	.	142	28	88	0	.	90
ASUN	55726	broad.mit.edu	37	12	27066437	27066437	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_018164	exon14	c.A1758G	p.K586K	.	.	644	8	443	0	.	.
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99032672	99032672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001198879	exon3	c.G341A	p.S114N	.	.	47	15	46	0	.	.
ATP6V1C2	245973	bcgsc.ca	37	2	10912680	10912680	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ATP6V1C2	NM_001039362	exon8	c.A582G	p.S194S	.	.	190	6	141	0	.	91
ATP7B	540	broad.mit.edu;bcgsc.ca	37	13	52511519	52511519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ATP7B	NM_000053	exon19	c.T3914C	p.L1305P	.	.	73	5	58	0	.	92
ATP8A1	10396	broad.mit.edu	37	4	42558018	42558018	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ATP8A1	NM_006095	exon16	c.T1380C	p.D460D	.	.	566	8	261	2	.	92
ATP9B	374868	bcgsc.ca	37	18	77105836	77105836	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ATP9B	NM_198531	exon23	c.A2679G	p.G893G	.	.	140	5	95	0	.	93
ATR	545	bcgsc.ca	37	3	142254005	142254005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ATR	NM_001184	exon21	c.T3862C	p.S1288P	.	.	249	7	194	0	.	1139
B3GNT2	10678	bcgsc.ca	37	2	62450498	62450498	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	B3GNT2	NM_006577	exon2	c.A1143G	p.Q381Q	.	.	130	5	80	0	.	23
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	60688821	60688821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	BCL11A	NM_018014	exon4	c.T1226G	p.L409R	.	.	132	29	118	0	.	1149
BCL9	607	bcgsc.ca	37	1	147091818	147091818	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	BCL9	NM_004326	exon8	c.A1857G	p.E619E	.	.	90	4	75	0	.	707
BIRC6	57448	bcgsc.ca	37	2	32768514	32768514	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	BIRC6	NM_016252	exon62	c.T12498C	p.R4166R	.	.	200	6	148	0	.	233
BPIFB3	359710	bcgsc.ca	37	20	31644356	31644356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_182658	exon2	c.A133G	p.N45D	.	.	129	5	89	0	.	.
C1orf68	100129271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152692135	152692135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	C1orf68	NM_001024679	exon1	c.138delC	p.G46fs	.	.	242	61	213	0	.	69
C2orf57	165100	bcgsc.ca	37	2	232457668	232457668	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	C2orf57	NM_152614	exon1	c.A6G	p.A2A	.	.	75	4	59	0	.	91
C3	718	bcgsc.ca	37	19	6681969	6681969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	C3	NM_000064	exon35	c.A4333G	p.I1445V	.	.	95	4	82	0	.	95
CACNA2D1	781	bcgsc.ca	37	7	82072723	82072723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CACNA2D1	NM_000722	exon1	c.T53C	p.L18P	.	.	75	5	125	1	.	96
CALR	811	bcgsc.ca	37	19	13051112	13051112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CALR	NM_004343	exon5	c.A548G	p.E183G	.	.	67	4	73	0	.	91
CARD14	79092	broad.mit.edu;bcgsc.ca	37	17	78156589	78156589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CARD14	NM_024110	exon3	c.G349T	p.G117C	.	.	161	7	92	0	.	231
CCT6P1	643253	broad.mit.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	.	.	.	.	.	.	92	7	52	0	.	.
CD163L1	283316	bcgsc.ca	37	12	7527225	7527225	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CD163L1	NM_174941	exon13	c.T3222C	p.C1074C	.	.	173	6	152	0	.	100
CD177	57126	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	43866283	43866283	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CD177	.	.	.	.	.	.	196	19	182	0	.	22
CD2AP	23607	bcgsc.ca	37	6	47575668	47575668	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CD2AP	NM_012120	exon15	c.T1536C	p.T512T	.	.	93	5	60	0	.	92
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41932594	41932594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CD300LG	NM_145273	exon5	c.C739T	p.R247C	.	.	116	25	60	0	.	90
CD97	976	bcgsc.ca	37	19	14512486	14512486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CD97	NM_078481	exon11	c.A1097G	p.E366G	.	.	53	4	61	0	.	570
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18028982	18028982	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CECR2	.	.	.	.	.	.	91	22	66	0	.	70
CGA	1081	broad.mit.edu	37	6	87796133	87796133	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CGA	NM_001252383	exon4	c.A201G	p.L67L	.	.	183	5	172	0	.	91
CHTF18	63922	broad.mit.edu;mdanderson.org	37	16	847042	847042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CHTF18	NM_022092	exon20	c.C2683T	p.H895Y	.	.	30	6	48	0	.	227
CIC	23152	ucsc.edu	37	19	42791241	42791241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CIC	NM_015125	exon3	c.A301G	p.T101A	.	.	27	4	18	0	.	591
CILP	8483	bcgsc.ca	37	15	65489288	65489288	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CILP	NM_003613	exon9	c.A3336G	p.G1112G	.	.	166	7	106	0	.	97
CNN2	1265	bcgsc.ca	37	19	1032631	1032631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CNN2	NM_201277	exon4	c.A326G	p.N109S	.	.	68	4	81	0	.	90
CNTN4	152330	bcgsc.ca	37	3	3078884	3078884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CNTN4	NM_175607	exon18	c.A1964G	p.K655R	.	.	156	5	88	0	.	344
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103491141	103491141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	COL11A1	NM_080629	exon7	c.A962G	p.Y321C	.	.	443	67	329	0	.	586
COL12A1	1303	bcgsc.ca	37	6	75843589	75843589	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	COL12A1	NM_004370	exon33	c.T5649C	p.G1883G	.	.	179	6	160	0	.	142
COL6A2	1292	bcgsc.ca	37	21	47538548	47538548	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	COL6A2	NM_058175	exon13	c.A1137G	p.G379G	.	.	88	6	112	0	.	515
COQ7	10229	broad.mit.edu	37	16	19088644	19088644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	COQ7	NM_016138	exon5	c.G524T	p.R175L	.	.	193	5	209	1	.	91
CPAMD8	27151	bcgsc.ca	37	19	17025239	17025239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CPAMD8	NM_015692	exon29	c.T3997C	p.S1333P	.	.	94	4	85	0	.	141
CRTC3	64784	bcgsc.ca	37	15	91150625	91150625	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CRTC3	NM_022769	exon6	c.T492C	p.S164S	.	.	81	5	57	0	.	393
CSAD	51380	bcgsc.ca	37	12	53554020	53554020	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CSAD	NM_015989	exon14	c.A1131G	p.G377G	.	.	124	6	93	0	.	91
CSNK2B	1460	bcgsc.ca	37	6	31635686	31635686	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CSNK2B	NM_001320	exon3	c.A114G	p.G38G	.	.	124	6	111	0	.	547
CUX1	1523	bcgsc.ca	37	7	101870653	101870653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CUX1	NM_001202543	exon21	c.C3170T	p.T1057I	.	.	58	5	45	0	.	160
CXorf61	203413	broad.mit.edu	37	X	115592921	115592921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CXorf61	NM_001017978	exon2	c.G329T	p.R110L	.	.	214	5	135	0	.	130
CYP4Z1	199974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47571829	47571829	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CYP4Z1	NM_178134	exon9	c.C1097G	p.T366R	.	.	308	107	225	0	.	91
CYP8B1	1582	bcgsc.ca	37	3	42916524	42916524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CYP8B1	NM_004391	exon1	c.T785C	p.L262P	.	.	86	4	75	0	.	92
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	14973	14973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	ENST00000361789	exon1	c.G227A	p.G76D	.	.	432	56	332	1	.	.
DBF4B	80174	bcgsc.ca	37	17	42807455	42807455	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DBF4B	NM_025104	exon4	c.C408T	p.P136P	.	.	71	4	41	0	.	227
DCBLD2	131566	ucsc.edu	37	3	98620023	98620023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DCBLD2	NM_080927	exon1	c.T148C	p.F50L	.	.	25	4	13	0	.	92
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6662505	6662505	+	Missense_Mutation	SNP	G	G	A	rs200060711		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DCHS1	NM_003737	exon2	c.C340T	p.R114C	.	.	51	5	43	0	G|0.999;A|0.000	73
DCLRE1C	64421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14976379	14976379	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DCLRE1C	NM_001033855	exon8	c.G678A	p.Q226Q	.	.	242	75	166	0	.	228
DCST1	149095	bcgsc.ca	37	1	155006912	155006912	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DCST1	NM_152494	exon3	c.G63T	p.T21T	.	.	121	5	89	0	.	92
DDB1	1642	bcgsc.ca	37	11	61081661	61081661	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DDB1	NM_001923	exon14	c.A1611G	p.E537E	.	.	155	6	143	0	.	661
DDHD2	23259	bcgsc.ca	37	8	38095081	38095081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DDHD2	NM_001164232	exon4	c.T437C	p.L146S	.	.	88	4	70	0	.	91
DDX51	317781	bcgsc.ca	37	12	132626466	132626466	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DDX51	NM_175066	exon6	c.A924G	p.T308T	.	.	166	6	144	0	.	227
DERL2	51009	bcgsc.ca	37	17	5384709	5384709	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DERL2	NM_016041	exon4	c.A234G	p.L78L	.	.	81	4	60	0	.	90
DIS3L	115752	ucsc.edu	37	15	66618692	66618692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DIS3L	NM_001143688	exon12	c.A2191G	p.I731V	.	.	42	4	26	0	.	92
DNAH10	196385	bcgsc.ca	37	12	124397706	124397706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DNAH10	NM_207437	exon59	c.A9842G	p.E3281G	.	.	161	6	98	0	.	95
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52393977	52393977	+	Nonsense_Mutation	SNP	C	C	T	rs200763734	alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DNAH1	NM_015512	exon27	c.C4453T	p.Q1485X	.	.	129	38	111	0	C|0.998;G|0.002	67
DNAH3	55567	bcgsc.ca	37	16	21133426	21133426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DNAH3	NM_017539	exon10	c.A1424G	p.E475G	.	.	78	4	57	0	.	167
DNAH5	1767	broad.mit.edu;bcgsc.ca	37	5	13763012	13763012	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DNAH5	NM_001369	exon61	c.10102-2A>G	.	.	.	168	5	72	0	.	182
DNAH9	1770	bcgsc.ca	37	17	11872666	11872666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DNAH9	NM_001372	exon69	c.C13283A	p.P4428H	.	.	59	5	51	0	.	168
DNMBP	23268	bcgsc.ca	37	10	101716535	101716535	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DNMBP	NM_015221	exon4	c.A696G	p.E232E	.	.	119	6	85	0	.	233
EEPD1	80820	bcgsc.ca	37	7	36338626	36338626	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	EEPD1	NM_030636	exon8	c.T1521C	p.A507A	.	.	79	4	57	0	.	68
EFCAB14	9813	bcgsc.ca	37	1	47149094	47149094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_014774	exon10	c.A1190G	p.Q397R	.	.	68	4	63	0	.	.
EFR3B	22979	bcgsc.ca	37	2	25315981	25315981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_014971	exon3	c.T194C	p.V65A	.	.	90	5	60	0	.	.
EIF3B	8662	hgsc.bcm.edu	37	7	2394991	2394991	+	Silent	SNP	C	C	T	rs11551167	byfrequency	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	EIF3B	NM_001037283	exon1	c.C435T	p.N145N	.	.	8	8	2	0	C|0.787;T|0.213	68
ELF1	1997	bcgsc.ca	37	13	41556138	41556138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ELF1	NM_001145353	exon1	c.T53C	p.V18A	.	.	79	4	59	0	.	227
ELTD1	64123	bcgsc.ca	37	1	79385893	79385893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ELTD1	NM_022159	exon10	c.T1436C	p.V479A	.	.	81	4	62	0	.	24
ERAP1	51752	bcgsc.ca	37	5	96139575	96139575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ERAP1	NM_001198541	exon2	c.T55C	p.S19P	.	.	125	5	93	0	.	70
ERBB2IP	55914	bcgsc.ca	37	5	65338992	65338992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ERBB2IP	NM_001253701	exon16	c.A1394G	p.D465G	.	.	200	6	121	0	.	653
ERCC8	1161	bcgsc.ca	37	5	60195542	60195542	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ERCC8	NM_000082	exon8	c.A630G	p.R210R	.	.	129	5	131	0	.	227
ERGIC3	51614	bcgsc.ca	37	20	34135214	34135214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ERGIC3	NM_015966	exon5	c.A419G	p.D140G	.	.	87	4	77	0	.	585
ETF1	2107	bcgsc.ca	37	5	137853285	137853285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ETF1	NM_004730	exon4	c.T367C	p.S123P	.	.	354	8	231	1	.	229
FADS2	9415	bcgsc.ca	37	11	61624938	61624938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FADS2	NM_004265	exon7	c.T818C	p.L273P	.	.	84	4	53	0	.	92
FAM151A	338094	broad.mit.edu;ucsc.edu	37	1	55075294	55075294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FAM151A	NM_176782	exon8	c.G1405T	p.E469X	.	.	27	3	16	0	.	90
FAM208A	23272	broad.mit.edu;bcgsc.ca	37	3	56700338	56700338	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001112736	exon7	c.T972C	p.S324S	.	.	133	7	100	0	.	.
FAM63A	55793	hgsc.bcm.edu;broad.mit.edu	37	1	150974678	150974679	+	In_Frame_Ins	INS	-	-	GAG	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FAM63A	NM_001163258	exon3	c.560_561insCTC	p.L187delinsPL	.	.	268	63	197	0	.	91
FANCA	2175	ucsc.edu;bcgsc.ca	37	16	89857938	89857938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FANCA	NM_000135	exon14	c.T1232C	p.V411A	.	.	35	4	36	0	.	1130
FAT1	2195	bcgsc.ca	37	4	187524777	187524777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FAT1	NM_005245	exon19	c.A10903G	p.T3635A	.	.	235	8	261	0	.	34
FAT3	120114	bcgsc.ca	37	11	92523118	92523118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FAT3	NM_001008781	exon7	c.A4345G	p.K1449E	.	.	158	6	95	1	.	73
FAT4	79633	bcgsc.ca	37	4	126411767	126411767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FAT4	NM_024582	exon17	c.A13790G	p.D4597G	.	.	102	5	101	0	.	108
FBXO18	84893	bcgsc.ca	37	10	5960440	5960440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FBXO18	NM_032807	exon14	c.A2252G	p.Q751R	.	.	62	4	49	0	.	228
FERMT2	10979	bcgsc.ca	37	14	53342004	53342004	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FERMT2	NM_001135000	exon8	c.A1035G	p.E345E	.	.	146	5	123	0	.	68
FGFR2	2263	bcgsc.ca	37	10	123239147	123239147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FGFR2	NM_001144915	exon17	c.A2072G	p.K691R	.	.	106	5	60	0	.	2607
FLT1	2321	bcgsc.ca	37	13	28896397	28896397	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FLT1	NM_002019	exon23	c.3051+2T>C	.	.	.	79	4	58	0	.	1406
FLT3	2322	broad.mit.edu	37	13	28588662	28588662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FLT3	NM_004119	exon23	c.A2786G	p.D929G	.	.	73	4	75	0	.	42117
FLT3LG	2323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49979723	49979723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FLT3LG	NM_001204503	exon4	c.G242A	p.R81H	.	.	68	16	48	0	.	115
GGCX	2677	bcgsc.ca	37	2	85777787	85777787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GGCX	NM_000821	exon14	c.T1975C	p.F659L	.	.	185	6	144	1	.	91
GHRL	51738	bcgsc.ca	37	3	10328403	10328403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GHRL	NM_016362	exon4	c.T319C	p.W107R	.	.	149	5	94	0	.	91
GMPS	8833	bcgsc.ca	37	3	155623973	155623973	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GMPS	NM_003875	exon5	c.T447C	p.V149V	.	.	144	5	85	0	.	229
GNAT1	2779	broad.mit.edu;mdanderson.org	37	3	50231028	50231028	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GNAT1	NM_144499	exon4	c.G381A	p.W127X	.	.	52	6	43	0	.	417
GNB1	2782	bcgsc.ca	37	1	1721934	1721934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GNB1	NM_002074	exon9	c.T599C	p.V200A	.	.	96	5	69	0	.	227
GNE	10020	broad.mit.edu	37	9	36229071	36229071	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GNE	NM_001128227	exon6	c.C1110T	p.T370T	.	.	264	7	231	0	.	115
GOLGA3	2802	bcgsc.ca	37	12	133372765	133372765	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GOLGA3	NM_001172557	exon11	c.T2142C	p.A714A	.	.	78	5	68	0	.	95
GOT1	2805	bcgsc.ca	37	10	101165989	101165989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GOT1	NM_002079	exon4	c.T442C	p.F148L	.	.	90	4	67	0	.	90
GPR162	27239	broad.mit.edu;bcgsc.ca	37	12	6934836	6934836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GPR162	NM_019858	exon3	c.A1055G	p.D352G	.	.	150	6	109	0	.	92
GRHL1	29841	bcgsc.ca	37	2	10136015	10136015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GRHL1	NM_198182	exon13	c.T1508C	p.L503S	.	.	76	4	53	0	.	92
GRID2	2895	bcgsc.ca	37	4	94159632	94159632	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GRID2	NM_001510	exon8	c.T1236C	p.G412G	.	.	100	5	86	0	.	159
GRM1	2911	broad.mit.edu;bcgsc.ca	37	6	146480536	146480536	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GRM1	NM_000838	exon3	c.A753G	p.E251E	.	.	91	6	80	0	.	1080
GSDMB	55876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38068752	38068752	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GSDMB	NM_001165958	exon4	c.236-2A>G	.	.	.	183	48	147	0	.	153
GTF3C1	2975	ucsc.edu;bcgsc.ca	37	16	27487845	27487845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GTF3C1	NM_001520	exon29	c.T4280C	p.L1427P	.	.	34	4	31	0	.	94
GUSBP1	728411	bcgsc.ca	37	5	21483636	21483636	+	RNA	SNP	G	G	C	rs9764179	byfrequency	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	.	.	.	.	.	.	67	5	49	0	G|0.930;C|0.070	.
HABP2	3026	bcgsc.ca	37	10	115343040	115343040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	HABP2	NM_004132	exon10	c.A1160G	p.E387G	.	.	191	6	151	0	.	517
HBZ	3050	bcgsc.ca	37	16	202914	202914	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	HBZ	NM_005332	exon1	c.T6C	p.S2S	.	.	44	4	55	0	.	22
HHEX	3087	bcgsc.ca	37	10	94454414	94454414	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	HHEX	NM_002729	exon4	c.T702C	p.S234S	.	.	149	5	106	0	.	227
HMCN1	83872	bcgsc.ca	37	1	186157102	186157102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	HMCN1	NM_031935	exon106	c.C16502T	p.T5501I	.	.	253	7	145	0	.	113
HTRA1	5654	bcgsc.ca	37	10	124268204	124268204	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	HTRA1	NM_002775	exon6	c.A1038G	p.K346K	.	.	158	5	92	0	.	90
IFT140	9742	ucsc.edu;bcgsc.ca	37	16	1612054	1612054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	IFT140	NM_014714	exon18	c.T2131C	p.F711L	.	.	42	4	49	1	.	95
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67787396	67787396	+	Missense_Mutation	SNP	C	C	A	rs149868445	byfrequency;alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	IL12RB2	NM_001559	exon3	c.C188A	p.S63Y	.	.	204	65	185	0	C|1.000;T|0.000	92
ITGAD	3681	bcgsc.ca	37	16	31421723	31421723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ITGAD	NM_005353	exon11	c.T1091C	p.L364P	.	.	106	5	126	1	.	226
ITIH2	3698	bcgsc.ca	37	10	7774327	7774327	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ITIH2	NM_002216	exon14	c.C1674T	p.T558T	.	.	123	6	110	0	.	93
ITSN2	50618	bcgsc.ca	37	2	24469172	24469172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ITSN2	NM_147152	exon29	c.A3403G	p.M1135V	.	.	147	5	100	0	.	539
IWS1	55677	broad.mit.edu;bcgsc.ca	37	2	128263270	128263270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	IWS1	NM_017969	exon3	c.A209G	p.E70G	.	.	163	6	124	0	.	91
KCNJ8	3764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21926286	21926286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KCNJ8	NM_004982	exon2	c.A265G	p.I89V	.	.	126	15	75	0	.	90
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196274453	196274458	+	In_Frame_Del	DEL	TAATAC	TAATAC	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	TAATAC	TAATAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KCNT2	NM_198503	exon22	c.2501_2506del	p.834_836del	.	.	109	17	86	0	.	159
KIAA0319	9856	bcgsc.ca	37	6	24572821	24572821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KIAA0319	NM_001168377	exon11	c.A1840G	p.T614A	.	.	145	5	103	1	.	92
KIAA1279	26128	bcgsc.ca	37	10	70764855	70764855	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KIAA1279	NM_015634	exon3	c.A579G	p.K193K	.	.	291	7	172	0	.	91
KIAA1429	25962	broad.mit.edu	37	8	95530113	95530113	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KIAA1429	NM_015496	exon10	c.G2571A	p.V857V	.	.	367	6	131	0	.	92
KLF9	687	bcgsc.ca	37	9	73027890	73027890	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KLF9	NM_001206	exon1	c.A390G	p.G130G	.	.	152	5	122	0	.	90
KPNA2	3838	bcgsc.ca	37	17	66041989	66041989	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KPNA2	NM_002266	exon10	c.T1449C	p.S483S	.	.	124	5	71	0	.	560
KRCC1	51315	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88327723	88327723	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KRCC1	NM_016618	exon4	c.T360C	p.F120F	.	.	497	135	348	1	.	69
LAMP3	27074	bcgsc.ca	37	3	182870172	182870172	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LAMP3	NM_014398	exon3	c.A879G	p.T293T	.	.	129	6	90	0	.	92
LAP3	51056	bcgsc.ca	37	4	17586619	17586619	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LAP3	NM_015907	exon6	c.A564G	p.K188K	.	.	140	8	91	2	.	90
LEPREL4	10609	bcgsc.ca	37	17	39966072	39966072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LEPREL4	NM_006455	exon4	c.T802C	p.S268P	.	.	51	4	44	0	.	90
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96358073	96358073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LNPEP	NM_005575	exon14	c.A2446G	p.M816V	.	.	189	54	101	0	.	229
LOC100289561	0	bcgsc.ca	37	7	102016741	102016741	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001242713	exon4	c.A225T	p.E75D	.	.	1141	77	772	0	.	.
LOC96610	0	bcgsc.ca	37	22	22657656	22657656	+	RNA	SNP	T	T	C	rs199529853		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	.	.	.	.	.	.	43	13	25	1	.	.
LPIN2	9663	bcgsc.ca	37	18	2929096	2929096	+	Missense_Mutation	SNP	T	T	C	rs113195728		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LPIN2	NM_014646	exon10	c.A1517G	p.D506G	.	.	160	6	102	0	T|0.500;C|0.500	227
LRP1	4035	bcgsc.ca	37	12	57567638	57567638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LRP1	NM_002332	exon22	c.A3422G	p.E1141G	.	.	202	6	186	0	.	596
LRPPRC	10128	ucsc.edu	37	2	44200761	44200761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LRPPRC	NM_133259	exon11	c.G1354A	p.E452K	.	.	173	2	116	0	.	93
LRRC16B	90668	bcgsc.ca	37	14	24529384	24529384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LRRC16B	NM_138360	exon24	c.A1981G	p.R661G	.	.	72	5	52	0	.	139
LRRC37A4P	55073	broad.mit.edu	37	17	43587526	43587526	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	.	.	.	.	.	.	311	10	169	1	.	.
LRRK1	79705	bcgsc.ca	37	15	101598317	101598317	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LRRK1	NM_024652	exon29	c.G4650T	p.V1550V	.	.	146	5	111	0	.	602
LTA4H	4048	bcgsc.ca	37	12	96397663	96397663	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LTA4H	NM_000895	exon17	c.A1566G	p.Q522Q	.	.	132	5	86	0	.	91
LTBP1	4052	broad.mit.edu	37	2	33623498	33623498	+	Silent	SNP	C	C	A	rs113896201	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LTBP1	NM_206943	exon34	c.C5052A	p.T1684T	.	.	199	5	168	1	C|0.998;T|0.002	230
LTBP4	8425	bcgsc.ca	37	19	41129522	41129522	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LTBP4	.	.	.	.	.	.	108	5	74	0	.	93
LTBR	4055	ucsc.edu	37	12	6500101	6500101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LTBR	NM_002342	exon10	c.T1306C	p.X436R	.	.	37	4	16	0	.	659
LY75	4065	bcgsc.ca	37	2	160698783	160698783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LY75	NM_002349	exon24	c.T3253C	p.F1085L	.	.	101	6	69	0	.	90
MAB21L2	10586	bcgsc.ca	37	4	151504262	151504262	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MAB21L2	NM_006439	exon1	c.C81T	p.I27I	.	.	60	4	63	0	.	91
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140993326	140993326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MAGEC1	NM_005462	exon4	c.G136C	p.D46H	.	.	59	24	41	0	.	133
MAMDC2	256691	bcgsc.ca	37	9	72833433	72833433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MAMDC2	NM_153267	exon12	c.T1832C	p.L611P	.	.	90	5	64	0	.	91
MAP2K2	5605	bcgsc.ca	37	19	4094461	4094461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MAP2K2	NM_030662	exon10	c.A1082G	p.K361R	.	.	46	4	30	0	.	510
MAP4K1	11184	bcgsc.ca	37	19	39090751	39090751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MAP4K1	NM_007181	exon21	c.T1574C	p.L525P	.	.	73	4	46	0	.	980
MBD5	55777	bcgsc.ca	37	2	149247744	149247744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MBD5	NM_018328	exon12	c.A3844G	p.N1282D	.	.	97	4	79	0	.	95
MED24	9862	bcgsc.ca	37	17	38188310	38188310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MED24	NM_014815	exon10	c.T970C	p.S324P	.	.	171	6	126	0	.	187
MFSD2B	388931	ucsc.edu;bcgsc.ca	37	2	24247135	24247135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MFSD2B	NM_001080473	exon13	c.T1484C	p.L495P	.	.	65	6	47	0	.	24
MICAL1	64780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	109768571	109768571	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MICAL1	NM_022765	exon16	c.C2059T	p.Q687X	.	.	93	13	82	0	.	154
MKRN2	23609	bcgsc.ca	37	3	12613863	12613863	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MKRN2	NM_014160	exon4	c.T633C	p.A211A	.	.	61	4	52	0	.	90
MLF1IP	79682	bcgsc.ca	37	4	185618882	185618882	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MLF1IP	NM_024629	exon12	c.A1062G	p.A354A	.	.	157	5	173	0	.	90
MLXIPL	51085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73020297	73020297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MLXIPL	NM_032954	exon6	c.A763G	p.T255A	.	.	65	18	52	1	.	91
MMD	23531	bcgsc.ca	37	17	53485152	53485152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MMD	NM_012329	exon4	c.A299G	p.D100G	.	.	165	5	70	0	.	90
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154886382	154886382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MME	NM_007287	exon19	c.A1882C	p.N628H	.	.	393	100	235	0	.	516
MOGS	7841	bcgsc.ca	37	2	74692106	74692106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MOGS	NM_006302	exon1	c.T269C	p.V90A	.	.	80	4	80	1	.	90
MORC3	23515	bcgsc.ca	37	21	37741950	37741950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MORC3	NM_015358	exon15	c.A2284G	p.K762E	.	.	141	6	121	0	.	92
MROH2B	133558	broad.mit.edu;bcgsc.ca	37	5	41065590	41065590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_173489	exon4	c.G204T	p.M68I	.	.	81	7	62	0	.	.
MROH2B	133558	broad.mit.edu;bcgsc.ca	37	5	41065593	41065593	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_173489	exon5	c.202-1G>C	.	.	.	79	7	59	0	.	.
MROH2B	133558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41065451	41065451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_173489	exon4	c.G343A	p.E115K	.	.	80	10	47	0	.	.
MRPL27	51264	broad.mit.edu;bcgsc.ca	37	17	48447873	48447873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MRPL27	NM_016504	exon2	c.T115C	p.S39P	.	.	211	7	141	0	.	90
MRPS16	51021	broad.mit.edu;bcgsc.ca	37	10	75010748	75010748	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MRPS16	NM_016065	exon3	c.T276C	p.G92G	.	.	155	8	89	0	.	90
MTHFD1	4522	bcgsc.ca	37	14	64867526	64867526	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MTHFD1	NM_005956	exon2	c.A57G	p.R19R	.	.	162	5	128	0	.	92
MTMR7	9108	broad.mit.edu;bcgsc.ca	37	8	17230680	17230680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MTMR7	NM_004686	exon2	c.G94T	p.A32S	.	.	151	6	110	1	.	91
MYB	4602	bcgsc.ca	37	6	135515552	135515552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MYB	NM_001161656	exon8	c.T902C	p.L301P	.	.	135	6	109	0	.	838
MYH13	8735	broad.mit.edu;bcgsc.ca	37	17	10224971	10224971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MYH13	NM_003802	exon24	c.A2989G	p.T997A	.	.	601	11	526	0	.	6
MYH7	4625	bcgsc.ca	37	14	23897729	23897729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MYH7	NM_000257	exon15	c.T1558C	p.C520R	.	.	275	7	235	0	.	94
MYO6	4646	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76596568	76596568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MYO6	NM_004999	exon25	c.G2515A	p.G839S	.	.	78	9	70	0	.	92
MYOM1	8736	bcgsc.ca	37	18	3174133	3174133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MYOM1	NM_003803	exon7	c.T1096C	p.S366P	.	.	234	6	164	1	.	94
MYOZ2	51778	bcgsc.ca	37	4	120079175	120079175	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MYOZ2	NM_016599	exon4	c.247-2A>G	.	.	.	99	4	82	0	.	90
N4BP2	55728	broad.mit.edu	37	4	40123233	40123233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	N4BP2	NM_018177	exon9	c.A3502G	p.T1168A	.	.	274	6	103	0	.	602
NAIP	4671	bcgsc.ca	37	5	70308201	70308201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NAIP	NM_004536	exon4	c.T542C	p.L181P	.	.	176	7	120	0	.	205
NARS2	79731	bcgsc.ca	37	11	78239926	78239926	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NARS2	NM_024678	exon6	c.A651G	p.L217L	.	.	78	4	37	0	.	92
NBAS	51594	bcgsc.ca	37	2	15676651	15676651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NBAS	NM_015909	exon8	c.A538G	p.S180G	.	.	74	4	55	0	.	94
NCOA1	8648	bcgsc.ca	37	2	24929999	24929999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NCOA1	NM_147223	exon11	c.T1660C	p.F554L	.	.	167	6	109	0	.	228
NDNF	79625	bcgsc.ca	37	4	121957972	121957972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NDNF	NM_024574	exon4	c.T1154C	p.V385A	.	.	126	6	128	0	.	90
NELFB	25920	bcgsc.ca	37	9	140151274	140151274	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_015456	exon4	c.367-2A>G	.	.	.	62	5	49	0	.	.
NF2	4771	bcgsc.ca	37	22	30057293	30057293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NF2	NM_000268	exon8	c.A775G	p.N259D	.	.	74	5	54	0	.	4696
NHS	4810	bcgsc.ca	37	X	17745040	17745040	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NHS	NM_198270	exon6	c.A2751G	p.E917E	.	.	128	5	57	0	.	197
NHSL2	340527	bcgsc.ca	37	X	71357030	71357030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NHSL2	NM_001013627	exon5	c.A847G	p.R283G	.	.	126	7	106	1	.	108
NINL	22981	bcgsc.ca	37	20	25443164	25443164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NINL	NM_025176	exon20	c.A3437G	p.K1146R	.	.	112	5	76	0	.	94
NOS2	4843	ucsc.edu;bcgsc.ca	37	17	26106023	26106023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NOS2	NM_000625	exon10	c.T1064C	p.M355T	.	.	43	4	31	0	.	156
NPFF	8620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53900573	53900573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NPFF	NM_003717	exon3	c.T329C	p.F110S	.	.	68	17	54	0	.	90
NRG1	3084	bcgsc.ca	37	8	32620774	32620774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NRG1	NM_013960	exon12	c.A1307G	p.H436R	.	.	285	8	217	0	.	525
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	50758388	50758388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NRXN1	NM_001135659	exon12	c.G2444A	p.R815H	.	.	101	20	78	0	.	92
NT5DC2	64943	bcgsc.ca	37	3	52563271	52563271	+	Silent	SNP	A	A	G	rs137868296	alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NT5DC2	NM_001134231	exon2	c.T312C	p.V104V	.	.	138	5	124	0	A|1.000;C|0.000	514
NUP107	57122	bcgsc.ca	37	12	69120392	69120392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NUP107	NM_020401	exon19	c.A1690G	p.T564A	.	.	140	5	68	0	.	629
NUP98	4928	bcgsc.ca	37	11	3697532	3697532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NUP98	NM_016320	exon33	c.T5260C	p.S1754P	.	.	95	6	75	0	.	703
NUP98	4928	bcgsc.ca	37	11	3733938	3733938	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NUP98	NM_005387	exon20	c.T2649C	p.Y883Y	.	.	142	5	81	0	.	703
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58207461	58207461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	OR5B12	NM_001004733	exon1	c.C164A	p.T55N	.	.	178	47	102	0	.	68
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	90937753	90937753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	OSGIN2	NM_001126111	exon6	c.T1643C	p.I548T	.	.	218	126	81	0	.	68
P2RX3	5024	bcgsc.ca	37	11	57136893	57136893	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	P2RX3	NM_002559	exon11	c.A1062G	p.K354K	.	.	44	5	36	0	.	68
PACS1	55690	bcgsc.ca	37	11	65988678	65988678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PACS1	NM_018026	exon10	c.T1253C	p.L418P	.	.	129	7	126	3	.	74
PADI1	29943	bcgsc.ca	37	1	17570665	17570665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PADI1	NM_013358	exon16	c.A1919G	p.Q640R	.	.	147	5	123	1	.	68
PADI4	23569	bcgsc.ca	37	1	17662691	17662691	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PADI4	NM_012387	exon4	c.A378G	p.K126K	.	.	132	5	115	0	.	70
PALLD	23022	bcgsc.ca	37	4	169433128	169433128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PALLD	NM_001166108	exon2	c.A473G	p.H158R	.	.	53	4	63	0	.	94
PALM3	342979	broad.mit.edu	37	19	14164867	14164867	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PALM3	NM_001145028	exon6	c.A1572G	p.E524E	.	.	499	8	446	0	.	24
PARP1	142	bcgsc.ca	37	1	226552743	226552743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PARP1	NM_001618	exon19	c.T2618C	p.L873P	.	.	77	5	62	1	.	727
PASK	23178	bcgsc.ca	37	2	242076673	242076673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PASK	NM_015148	exon7	c.A883G	p.K295E	.	.	95	4	63	0	.	536
PAX1	5075	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	21687580	21687580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PAX1	NM_006192	exon2	c.G791A	p.G264D	.	.	44	5	47	0	.	227
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4968285	4968285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_032972	exon2	c.C2666A	p.P889Q	.	.	484	120	258	0	.	.
PCDHGA10	56106	bcgsc.ca	37	5	140792782	140792782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_032090	exon1	c.T40C	p.C14R	.	.	139	5	123	0	.	.
PCM1	5108	broad.mit.edu	37	8	17819627	17819627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PCM1	NM_006197	exon16	c.A2407G	p.T803A	.	.	197	5	194	0	.	742
PDE11A	50940	bcgsc.ca	37	2	178936585	178936585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PDE11A	NM_016953	exon1	c.T580C	p.C194R	.	.	108	5	84	0	.	93
PDHA1	5160	bcgsc.ca	37	X	19377729	19377729	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PDHA1	NM_001173454	exon12	c.T1245C	p.V415V	.	.	90	4	47	0	.	227
PDILT	204474	bcgsc.ca	37	16	20386254	20386254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PDILT	NM_174924	exon5	c.T571C	p.F191L	.	.	155	5	144	0	.	153
PER2	8864	broad.mit.edu;bcgsc.ca	37	2	239155099	239155099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PER2	NM_022817	exon23	c.T3685C	p.S1229P	.	.	148	6	106	0	.	154
PFKP	5214	bcgsc.ca	37	10	3178004	3178004	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PFKP	NM_002627	exon21	c.A2199G	p.A733A	.	.	156	5	115	0	.	253
PGM1	5236	bcgsc.ca	37	1	64117360	64117360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PGM1	NM_001172818	exon9	c.A1355G	p.E452G	.	.	233	7	175	1	.	228
PHF20	51230	bcgsc.ca	37	20	34446285	34446285	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PHF20	NM_016436	exon5	c.A402G	p.K134K	.	.	367	8	241	0	.	515
PHF21B	112885	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45289355	45289355	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PHF21B	NM_138415	exon7	c.C942T	p.S314S	.	.	195	36	139	2	.	93
PHF23	79142	bcgsc.ca	37	17	7139509	7139509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PHF23	NM_024297	exon4	c.A737G	p.D246G	.	.	89	5	71	0	.	90
PIK3R5	23533	bcgsc.ca	37	17	8809044	8809044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PIK3R5	NM_001142633	exon4	c.A215G	p.K72R	.	.	72	5	60	0	.	1146
PKHD1L1	93035	bcgsc.ca	37	8	110417225	110417225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PKHD1L1	NM_177531	exon16	c.T1535C	p.V512A	.	.	167	6	99	0	.	145
PLB1	151056	broad.mit.edu	37	2	28849320	28849320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PLB1	NM_153021	exon51	c.A3605G	p.K1202R	.	.	96	5	89	0	.	141
PLCB1	23236	bcgsc.ca	37	20	8714031	8714031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PLCB1	NM_015192	exon19	c.A2035C	p.I679L	.	.	200	7	145	0	.	297
PLCL2	23228	bcgsc.ca	37	3	17052460	17052460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PLCL2	NM_015184	exon2	c.A1244G	p.D415G	.	.	167	5	121	0	.	229
PLK1	5347	bcgsc.ca	37	16	23690464	23690464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PLK1	NM_005030	exon1	c.T211C	p.S71P	.	.	79	5	63	0	.	766
PNPLA5	150379	bcgsc.ca	37	22	44277456	44277456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PNPLA5	NM_138814	exon8	c.A1181G	p.Q394R	.	.	89	4	67	0	.	90
POLR1A	25885	bcgsc.ca	37	2	86297234	86297234	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	POLR1A	NM_015425	exon13	c.A1773G	p.G591G	.	.	135	5	86	0	.	93
PPAT	5471	bcgsc.ca	37	4	57269237	57269237	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PPAT	NM_002703	exon5	c.T630C	p.R210R	.	.	154	5	70	0	.	90
PPFIBP2	8495	broad.mit.edu;bcgsc.ca	37	11	7670122	7670122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PPFIBP2	NM_003621	exon19	c.T1889C	p.L630P	.	.	175	6	125	0	.	273
PRG2	5553	bcgsc.ca	37	11	57156685	57156685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PRG2	NM_001243245	exon3	c.A164G	p.E55G	.	.	170	5	154	0	.	154
PRKAA2	5563	bcgsc.ca	37	1	57169781	57169781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PRKAA2	NM_006252	exon7	c.A926G	p.N309S	.	.	198	6	140	1	.	885
PRKAR2A	5576	bcgsc.ca	37	3	48793846	48793846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PRKAR2A	NM_004157	exon9	c.A905G	p.E302G	.	.	151	6	89	0	.	1108
PRKCQ	5588	bcgsc.ca	37	10	6553050	6553050	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PRKCQ	NM_006257	exon3	c.A225G	p.K75K	.	.	379	8	241	1	.	1380
PRR14L	253143	bcgsc.ca	37	22	32112518	32112518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PRR14L	NM_173566	exon4	c.T1307C	p.V436A	.	.	221	6	130	0	.	91
PSMD5	5711	bcgsc.ca	37	9	123595680	123595680	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PSMD5	NM_005047	exon2	c.A228G	p.E76E	.	.	80	4	56	0	.	90
PSME4	23198	bcgsc.ca	37	2	54161827	54161827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PSME4	NM_014614	exon8	c.T872C	p.V291A	.	.	83	4	60	0	.	275
PTPRT	11122	bcgsc.ca	37	20	40790101	40790101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PTPRT	NM_133170	exon18	c.T2630C	p.M877T	.	.	102	5	81	0	.	664
PWP2	5822	bcgsc.ca	37	21	45550553	45550553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	PWP2	NM_005049	exon21	c.A2660G	p.D887G	.	.	49	4	56	0	.	91
RAB8B	51762	bcgsc.ca	37	15	63547780	63547780	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RAB8B	NM_016530	exon4	c.A321G	p.E107E	.	.	344	9	305	0	.	228
RABGGTA	5875	bcgsc.ca	37	14	24739345	24739345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_004581	exon4	c.T241C	p.S81P	.	.	47	4	57	0	.	.
RAP1GDS1	5910	bcgsc.ca	37	4	99358208	99358208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RAP1GDS1	NM_001100426	exon14	c.T1688C	p.L563P	.	.	122	5	99	0	.	660
RASGRP2	10235	ucsc.edu;bcgsc.ca	37	11	64496440	64496440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RASGRP2	NM_001098671	exon15	c.A1666G	p.S556G	.	.	46	4	36	1	.	227
RBM27	54439	bcgsc.ca	37	5	145651171	145651171	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RBM27	NM_018989	exon19	c.T2922C	p.R974R	.	.	204	6	129	0	.	70
RBM44	375316	bcgsc.ca	37	2	238725694	238725694	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RBM44	NM_001080504	exon3	c.A135G	p.E45E	.	.	309	8	197	0	.	26
RBM46	166863	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155719372	155719372	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RBM46	NM_144979	exon3	c.A561G	p.A187A	.	.	219	43	192	2	.	69
RBM48	84060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92158153	92158153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_032120	exon1	c.G26T	p.G9V	.	.	176	46	134	0	.	.
RBP5	83758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7281340	7281340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RBP5	NM_031491	exon1	c.T32A	p.F11Y	.	.	296	73	223	0	.	91
RIMS1	22999	bcgsc.ca	37	6	72960107	72960107	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RIMS1	NM_014989	exon13	c.A2316G	p.R772R	.	.	158	5	107	0	.	144
RIMS1	22999	bcgsc.ca	37	6	73016984	73016984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RIMS1	NM_014989	exon27	c.A3874G	p.T1292A	.	.	152	5	131	0	.	144
RNF103	7844	bcgsc.ca	37	2	86832498	86832498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RNF103	NM_005667	exon4	c.T526C	p.S176P	.	.	265	9	180	1	.	226
RNF113B	140432	bcgsc.ca	37	13	98828750	98828750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RNF113B	NM_178861	exon1	c.C741A	p.S247R	.	.	136	5	139	0	.	92
RNF213	57674	bcgsc.ca	37	17	78346400	78346400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RNF213	NM_001256071	exon48	c.A12617G	p.K4206R	.	.	153	7	104	0	.	577
RNR2	6053	broad.mit.edu	37	MT	1787	1787	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	.	.	.	.	.	.	412	26	335	1	.	.
ROCK1	6093	bcgsc.ca	37	18	18629110	18629110	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ROCK1	NM_005406	exon4	c.T357C	p.A119A	.	.	201	6	124	0	.	1026
RRM1	6240	broad.mit.edu	37	11	4139585	4139585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RRM1	NM_001033	exon8	c.A686G	p.E229G	.	.	512	6	351	0	.	227
RRM2	6241	broad.mit.edu;bcgsc.ca	37	2	10269226	10269226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RRM2	NM_001165931	exon9	c.A1142G	p.K381R	.	.	429	9	336	1	.	227
RYR2	6262	bcgsc.ca	37	1	237875074	237875074	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RYR2	NM_001035	exon71	c.T10260C	p.V3420V	.	.	295	7	195	0	.	158
SAMD4B	55095	bcgsc.ca	37	19	39869228	39869228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SAMD4B	NM_018028	exon11	c.A1529G	p.E510G	.	.	139	5	121	0	.	90
SARS2	54938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39408640	39408640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SARS2	NM_001145901	exon12	c.G977T	p.C326F	.	.	190	60	140	0	.	93
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123825580	123825580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SBNO1	NM_001167856	exon4	c.A606C	p.R202S	.	.	237	66	145	0	.	292
SCRG1	11341	bcgsc.ca	37	4	174312336	174312336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SCRG1	NM_007281	exon2	c.T230C	p.L77P	.	.	62	4	85	0	.	90
SEC24C	9632	bcgsc.ca	37	10	75525890	75525890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SEC24C	NM_004922	exon12	c.T1529C	p.V510A	.	.	108	5	79	0	.	92
SEMA4C	54910	bcgsc.ca	37	2	97527325	97527325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SEMA4C	NM_017789	exon14	c.A1663G	p.S555G	.	.	144	6	124	0	.	92
SEMA4F	10505	bcgsc.ca	37	2	74900939	74900939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SEMA4F	NM_004263	exon7	c.T806C	p.V269A	.	.	77	5	70	0	.	93
SEMG2	6407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43851219	43851219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SEMG2	NM_003008	exon2	c.A946T	p.I316F	.	.	257	64	172	0	.	91
SERGEF	26297	broad.mit.edu	37	11	17809689	17809689	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SERGEF	NM_012139	exon11	c.A1320G	p.R440R	.	.	1260	12	847	2	.	227
SERPINH1	871	broad.mit.edu;bcgsc.ca	37	11	75279857	75279857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SERPINH1	NM_001207014	exon4	c.T704C	p.M235T	.	.	99	7	77	0	.	228
SETD2	29072	broad.mit.edu;bcgsc.ca	37	3	47163442	47163442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SETD2	NM_014159	exon3	c.T2684C	p.L895P	.	.	116	7	53	0	.	1273
SEZ6L2	26470	bcgsc.ca	37	16	29883545	29883545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SEZ6L2	NM_001243332	exon17	c.T2705C	p.V902A	.	.	39	4	38	1	.	92
SF3B3	23450	bcgsc.ca	37	16	70605632	70605632	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SF3B3	NM_012426	exon26	c.A3570G	p.Q1190Q	.	.	87	4	81	0	.	91
SHANK3	85358	bcgsc.ca	37	22	51160378	51160378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SHANK3	NM_033517	exon21	c.A4075G	p.T1359A	.	.	71	4	67	0	.	69
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	77677614	77677618	+	Frame_Shift_Del	DEL	TTCTA	TTCTA	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	TTCTA	TTCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SHROOM3	NM_020859	exon8	c.4722_4726del	p.1574_1576del	.	.	132	19	127	0	.	93
SIRT1	23411	bcgsc.ca	37	10	69669014	69669014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SIRT1	NM_012238	exon7	c.T1172C	p.V391A	.	.	131	6	89	0	.	226
SLAMF6	114836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160461021	160461021	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLAMF6	NM_052931	exon3	c.T540C	p.T180T	.	.	238	71	181	0	.	228
SLC22A3	6581	bcgsc.ca	37	6	160858139	160858139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC22A3	NM_021977	exon7	c.T1184C	p.L395P	.	.	160	6	142	0	.	517
SLC26A2	1836	bcgsc.ca	37	5	149360857	149360857	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC26A2	NM_000112	exon3	c.T1701C	p.S567S	.	.	249	7	179	0	.	90
SLC26A2	1836	broad.mit.edu	37	5	149359899	149359899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC26A2	NM_000112	exon3	c.T743C	p.L248P	.	.	1537	13	1072	1	.	90
SLC26A5	375611	bcgsc.ca	37	7	103032096	103032096	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC26A5	NM_206883	exon11	c.T1206C	p.V402V	.	.	120	5	60	0	.	91
SLC35F2	54733	bcgsc.ca	37	11	107673744	107673744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC35F2	NM_017515	exon7	c.T922C	p.F308L	.	.	318	8	211	0	.	90
SLC39A14	23516	bcgsc.ca	37	8	22262264	22262264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC39A14	NM_001135153	exon2	c.T41C	p.L14P	.	.	159	7	171	1	.	90
SLC45A2	51151	broad.mit.edu	37	5	33951778	33951778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC45A2	NM_016180	exon5	c.T1037C	p.V346A	.	.	87	5	78	0	.	93
SLC5A11	115584	broad.mit.edu	37	16	24883481	24883481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC5A11	NM_052944	exon5	c.G313T	p.G105C	.	.	443	7	427	1	.	92
SLC8A1	6546	bcgsc.ca	37	2	40397442	40397442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLC8A1	NM_021097	exon6	c.T2017C	p.S673P	.	.	137	5	109	0	.	93
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144904543	144904543	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLITRK2	NM_001144005	exon5	c.C600A	p.G200G	.	.	93	37	78	0	.	136
SMARCA4	6597	bcgsc.ca	37	19	11134207	11134207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SMARCA4	NM_003072	exon20	c.A2873G	p.E958G	.	.	73	4	63	0	.	1523
SMOC1	64093	bcgsc.ca	37	14	70459174	70459174	+	Silent	SNP	G	G	T	rs142590267	byfrequency;alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SMOC1	NM_001034852	exon6	c.G567T	p.P189P	.	.	207	7	177	0	G|0.996;A|0.004	92
SMYD4	114826	bcgsc.ca	37	17	1715342	1715342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SMYD4	NM_052928	exon3	c.C202T	p.P68S	.	.	80	4	76	0	.	230
SNX14	57231	bcgsc.ca	37	6	86239979	86239979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SNX14	NM_153816	exon19	c.G1825A	p.E609K	.	.	61	4	34	0	.	226
SON	6651	bcgsc.ca	37	21	34926727	34926727	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SON	NM_032195	exon3	c.A5190G	p.E1730E	.	.	85	4	66	0	.	97
SPATA24	202051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138739744	138739744	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_194296	exon1	c.G6T	p.A2A	.	.	44	12	26	0	.	.
SPINT1	6692	bcgsc.ca	37	15	41145392	41145392	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SPINT1	NM_181642	exon3	c.G546A	p.K182K	.	.	70	4	58	0	.	91
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	107	24	84	0	A|0.000;C|0.697;T|0.303	45
SPTB	6710	bcgsc.ca	37	14	65253695	65253695	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SPTB	NM_001024858	exon15	c.G2988A	p.K996K	.	.	58	4	58	0	.	100
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149485526	149485526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_198455	exon27	c.G3932A	p.G1311D	.	.	100	26	109	0	.	.
ST3GAL1	6482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134477129	134477129	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ST3GAL1	NM_173344	exon7	c.C575G	p.P192R	.	.	336	176	168	0	.	90
ST6GAL1	6480	bcgsc.ca	37	3	186791983	186791983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ST6GAL1	NM_003032	exon6	c.T841C	p.Y281H	.	.	176	7	109	0	.	650
STAP2	55620	bcgsc.ca	37	19	4333782	4333782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	STAP2	NM_001013841	exon3	c.A206G	p.E69G	.	.	59	4	51	0	.	90
STAT1	6772	broad.mit.edu;bcgsc.ca	37	2	191849093	191849093	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	STAT1	NM_007315	exon16	c.T1290C	p.L430L	.	.	310	8	251	1	.	1335
STAT3	6774	bcgsc.ca	37	17	40478172	40478172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	STAT3	NM_003150	exon15	c.A1327G	p.T443A	.	.	145	6	99	1	.	1271
STBD1	8987	ucsc.edu;bcgsc.ca	37	4	77228038	77228038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	STBD1	NM_003943	exon1	c.A116G	p.E39G	.	.	57	5	58	2	.	69
STIM1	6786	bcgsc.ca	37	11	4103484	4103484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	STIM1	NM_003156	exon8	c.T1040C	p.L347P	.	.	152	5	164	0	.	91
STRN4	29888	ucsc.edu;bcgsc.ca	37	19	47225275	47225275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	STRN4	NM_001039877	exon16	c.T2081C	p.V694A	.	.	30	4	28	0	.	90
SV2A	9900	broad.mit.edu;bcgsc.ca	37	1	149885266	149885266	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SV2A	NM_014849	exon2	c.C127A	p.R43R	.	.	223	6	137	0	.	97
TAAR1	134864	bcgsc.ca	37	6	132966658	132966658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TAAR1	NM_138327	exon1	c.A485G	p.E162G	.	.	155	5	117	1	.	90
TAOK3	51347	broad.mit.edu	37	12	118615130	118615130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TAOK3	NM_016281	exon16	c.A1571G	p.K524R	.	.	227	7	128	0	.	933
TAX1BP1	8887	bcgsc.ca	37	7	27809340	27809340	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TAX1BP1	NM_006024	exon5	c.T499C	p.L167L	.	.	210	6	167	1	.	153
TBX2	6909	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	59479112	59479112	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TBX2	NM_005994	exon2	c.A463T	p.M155L	.	.	70	9	74	1	.	226
TDRD6	221400	bcgsc.ca	37	6	46661863	46661863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TDRD6	NM_001168359	exon1	c.A5998G	p.S2000G	.	.	148	5	138	0	.	138
TDRD9	122402	bcgsc.ca	37	14	104433148	104433148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TDRD9	NM_153046	exon5	c.A745G	p.T249A	.	.	128	5	103	0	.	70
TEAD1	7003	bcgsc.ca	37	11	12951809	12951809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TEAD1	NM_021961	exon12	c.A1103G	p.K368R	.	.	244	6	196	0	.	90
TET3	200424	bcgsc.ca	37	2	74320039	74320039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_144993	exon6	c.T2645C	p.L882P	.	.	221	9	182	1	.	.
THBS2	7058	bcgsc.ca	37	6	169642021	169642021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	THBS2	NM_003247	exon6	c.A727G	p.T243A	.	.	48	4	42	0	.	95
TKTL2	84076	broad.mit.edu	37	4	164394000	164394000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TKTL2	NM_032136	exon1	c.A887G	p.D296G	.	.	745	9	584	1	.	95
TMCO5A	145942	bcgsc.ca	37	15	38230391	38230391	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TMCO5A	NM_152453	exon5	c.T348C	p.C116C	.	.	171	5	129	0	.	514
TMEM106C	79022	broad.mit.edu	37	12	48359644	48359644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TMEM106C	NM_001143843	exon4	c.T275C	p.I92T	.	.	924	11	629	1	.	90
TMEM106C	79022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48359720	48359720	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TMEM106C	NM_001143843	exon4	c.C351T	p.G117G	.	.	740	47	453	0	.	90
TMEM194A	23306	bcgsc.ca	37	12	57457859	57457859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TMEM194A	NM_001130963	exon6	c.T749C	p.L250P	.	.	100	5	50	0	.	68
TMEM245	23731	bcgsc.ca	37	9	111870825	111870825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_032012	exon2	c.T605C	p.V202A	.	.	83	4	78	0	.	.
TNFRSF11A	8792	bcgsc.ca	37	18	60025566	60025566	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TNFRSF11A	NM_001270951	exon5	c.C513T	p.P171P	.	.	68	4	37	0	.	659
TNIP2	79155	bcgsc.ca	37	4	2744082	2744082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TNIP2	NM_024309	exon6	c.A1192G	p.R398G	.	.	116	6	112	1	.	90
TNS1	7145	bcgsc.ca	37	2	218712353	218712353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TNS1	NM_022648	exon17	c.T2512C	p.S838P	.	.	113	6	57	0	.	156
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578419	7578419	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G511T	p.E171X	.	.	64	23	88	0	.	70225
TPTE2	93492	broad.mit.edu	37	13	20056679	20056679	+	Missense_Mutation	SNP	T	T	G	rs200244531		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TPTE2	NM_199254	exon5	c.A128C	p.E43A	.	.	539	10	467	1	.	92
TPX2	22974	broad.mit.edu;bcgsc.ca	37	20	30371595	30371595	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TPX2	NM_012112	exon12	c.C1284A	p.T428T	.	.	175	5	131	1	.	290
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110131669	110131669	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	TRHR,nipple,malignant_melanoma,+1	TRHR	NM_003301	exon2	c.C1182A	p.S394S	.	.	297	67	117	0	.	620
TRIM10	10107	bcgsc.ca	37	6	30121751	30121751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TRIM10	NM_006778	exon7	c.T1441C	p.S481P	.	.	68	4	42	0	.	226
TRIM69	140691	bcgsc.ca	37	15	45048570	45048570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TRIM69	NM_182985	exon3	c.A488G	p.E163G	.	.	83	6	72	0	.	90
TRIM71	131405	bcgsc.ca	37	3	32932471	32932471	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TRIM71	NM_001039111	exon4	c.C1775G	p.P592R	.	.	68	5	62	0	.	92
TRPM5	29850	bcgsc.ca	37	11	2433416	2433416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TRPM5	NM_014555	exon16	c.A2423G	p.N808S	.	.	97	4	83	0	.	137
TRPM7	54822	bcgsc.ca;mdanderson.org	37	15	50897161	50897161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TRPM7	NM_017672	exon21	c.A2890C	p.I964L	.	.	196	26	151	1	.	392
TTC28	23331	bcgsc.ca	37	22	28379657	28379657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001145418	exon23	c.T5998C	p.S2000P	.	.	109	5	80	0	.	.
TTN	7273	bcgsc.ca	37	2	179466259	179466259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TTN	NM_001267550	exon287	c.A55465G	p.S18489G	.	.	196	6	123	0	.	636
TUBGCP2	10844	broad.mit.edu	37	10	135111528	135111528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TUBGCP2	NM_001256617	exon5	c.T544C	p.Y182H	.	.	539	7	359	1	.	90
UBE2G1	7326	bcgsc.ca	37	17	4210343	4210343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	UBE2G1	NM_003342	exon2	c.T122C	p.L41P	.	.	122	5	115	0	.	226
UBE3A	7337	bcgsc.ca	37	15	25599801	25599801	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	UBE3A	NM_000462	exon11	c.T2163C	p.I721I	.	.	69	4	46	0	.	660
UBR3	130507	bcgsc.ca	37	2	170770653	170770653	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	UBR3	NM_172070	exon11	c.C1863T	p.D621D	.	.	198	6	141	0	.	68
UBXN11	91544	bcgsc.ca	37	1	26608873	26608873	+	Missense_Mutation	SNP	T	T	A	rs1134583	byfrequency	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	UBXN11	NM_183008	exon16	c.A1480T	p.S494C	.	.	27	5	24	0	T|0.870;A|0.130	91
UCP3	7352	ucsc.edu;bcgsc.ca	37	11	73714875	73714875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	UCP3	NM_003356	exon6	c.A821G	p.K274R	.	.	41	4	35	0	.	91
UPF3A	65110	bcgsc.ca	37	13	115047267	115047267	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	UPF3A	NM_080687	exon1	c.T153C	p.G51G	.	.	52	5	82	1	.	91
VARS2	57176	bcgsc.ca	37	6	30891227	30891227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	VARS2	NM_001167734	exon25	c.T2501C	p.L834P	.	.	84	5	89	0	.	26
VAV2	7410	bcgsc.ca	37	9	136641172	136641172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	VAV2	NM_001134398	exon24	c.A1996G	p.I666V	.	.	52	4	42	0	.	1273
VHL	7428	bcgsc.ca	37	3	10191618	10191618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	VHL,NS,carcinoma,0	VHL	NM_000551	exon3	c.A611G	p.E204G	.	.	162	5	139	2	.	6694
VPS13D	55187	bcgsc.ca	37	1	12371660	12371660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	VPS13D	NM_015378	exon28	c.A6800G	p.D2267G	.	.	83	4	77	0	.	95
WDR7	23335	broad.mit.edu	37	18	54398752	54398752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	WDR7	NM_052834	exon14	c.C1913T	p.A638V	.	.	180	5	122	0	.	93
WRAP73	49856	bcgsc.ca	37	1	3566496	3566496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	WRAP73	NM_017818	exon1	c.T68C	p.L23P	.	.	34	4	34	0	.	90
XPC	7508	bcgsc.ca	37	3	14187655	14187655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	XPC	NM_004628	exon16	c.A2609G	p.E870G	.	.	84	5	61	0	.	662
YDJC	150223	mdanderson.org	37	22	21983416	21983416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	YDJC	NM_001017964	exon4	c.C485A	p.P162Q	.	.	12	3	16	0	.	68
ZBP1	81030	bcgsc.ca	37	20	56191418	56191418	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZBP1	NM_001160419	exon2	c.A141G	p.Q47Q	.	.	177	6	157	0	.	228
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60242702	60242702	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZCCHC2	NM_017742	exon13	c.A3388C	p.N1130H	.	.	197	55	125	0	.	432
ZDBF2	57683	bcgsc.ca	37	2	207173167	207173167	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZDBF2	NM_020923	exon5	c.A3915G	p.K1305K	.	.	143	5	83	0	.	3
ZMYM2	7750	bcgsc.ca	37	13	20567526	20567526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZMYM2	NM_001190964	exon4	c.A314G	p.E105G	.	.	114	5	93	0	.	685
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64148204	64148204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF365	NM_014951	exon3	c.G793T	p.V265F	.	.	160	23	125	0	.	92
ZNF367	195828	bcgsc.ca	37	9	99150740	99150740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF367	NM_153695	exon5	c.T832C	p.Y278H	.	.	128	6	116	0	.	90
ZNF385D	79750	bcgsc.ca	37	3	21606159	21606159	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF385D	NM_024697	exon3	c.A183G	p.K61K	.	.	152	5	103	0	.	156
ZNF462	58499	broad.mit.edu;mdanderson.org	37	9	109688981	109688981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF462	NM_021224	exon3	c.T2788C	p.C930R	.	.	66	17	47	1	.	95
ZNF469	84627	bcgsc.ca	37	16	88502479	88502479	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001127464	exon2	c.T8517C	p.G2839G	.	.	74	4	90	2	.	.
ZNF561	93134	bcgsc.ca	37	19	9720996	9720996	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF561	NM_152289	exon6	c.A1341G	p.K447K	.	.	142	7	110	0	.	91
ZNF596	169270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	195803	195803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF596	NM_173539	exon6	c.G956A	p.C319Y	.	.	149	54	116	0	.	90
ZNF644	84146	bcgsc.ca	37	1	91404129	91404129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF644	NM_201269	exon3	c.A2782G	p.N928D	.	.	170	5	118	0	.	155
ZNF675	171392	bcgsc.ca	37	19	23836775	23836775	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF675	NM_138330	exon4	c.T960C	p.A320A	.	.	111	5	50	0	.	228
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151262327	151262328	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF687	NM_020832	exon6	c.2808_2809insC	p.E936fs	.	.	105	17	94	0	.	92
ZNF716	441234	bcgsc.ca	37	7	57529008	57529008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF716	NM_001159279	exon4	c.T841C	p.S281P	.	.	77	5	53	0	.	24
ZNF814	730051	mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	639	185	311	5	.	.
ZNF827	152485	bcgsc.ca	37	4	146813472	146813472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF827	NM_178835	exon3	c.A1189G	p.T397A	.	.	190	6	220	1	.	22
ZNF880	400713	hgsc.bcm.edu	37	19	52887246	52887246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001145434	exon4	c.T413A	p.I138N	.	.	288	18	207	0	.	.
ZP1	22917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60641219	60641219	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZP1	NM_207341	exon9	c.T1543G	p.S515A	.	.	50	12	37	0	.	90
ZSCAN29	146050	bcgsc.ca	37	15	43658408	43658408	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZSCAN29	NM_152455	exon3	c.A1122G	p.E374E	.	.	67	4	70	0	.	91
ZZEF1	23140	bcgsc.ca	37	17	3955347	3955347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZZEF1	NM_015113	exon35	c.A5518G	p.I1840V	.	.	85	4	67	0	.	93
