Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2M	2	ucsc.edu	37	12	9253764	9253764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	A2M	NM_000014	exon13	c.G1534T	p.G512X	.	.	48	4	20	0	.	515
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu	37	7	48318518	48318518	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ABCA13	NM_152701	exon18	c.T7727A	p.L2576X	.	.	167	17	18	0	.	521
ABCA7	10347	bcgsc.ca	37	19	1051971	1051971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ABCA7	NM_019112	exon22	c.T2993C	p.L998P	.	.	57	4	270	0	.	98
ABCC8	6833	bcgsc.ca	37	11	17485018	17485018	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ABCC8	NM_000352	exon4	c.G546T	p.L182L	.	.	63	4	252	0	.	91
ABCF3	55324	bcgsc.ca	37	3	183907484	183907484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ABCF3	NM_018358	exon13	c.A1253G	p.E418G	.	.	79	4	245	1	.	94
ADAM21	8747	mdanderson.org	37	14	70924450	70924450	+	Silent	SNP	C	C	T	rs58247196		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ADAM21	NM_003813	exon2	c.C234T	p.V78V	.	.	138	31	131	5	.	92
ADCY2	108	bcgsc.ca	37	5	7520894	7520894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ADCY2	NM_020546	exon3	c.T452C	p.L151P	.	.	101	5	306	0	.	97
AKR1C4	1109	bcgsc.ca	37	10	5242212	5242212	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	AKR1C4	NM_001818	exon2	c.T153C	p.S51S	.	.	211	7	38	0	.	91
ALDH1L1	10840	ucsc.edu	37	3	125822677	125822677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ALDH1L1	NM_001270364	exon23	c.T2696C	p.L899P	.	.	43	4	95	2	.	156
ALKBH7	84266	bcgsc.ca	37	19	6374914	6374914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ALKBH7	NM_032306	exon4	c.C596A	p.S199Y	.	.	71	4	275	0	.	90
ALOX12	239	ucsc.edu	37	17	6909260	6909260	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ALOX12	NM_000697	exon10	c.T1332C	p.P444P	.	.	41	4	299	0	.	226
ANKRD13B	124930	bcgsc.ca	37	17	27937738	27937738	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ANKRD13B	NM_152345	exon8	c.C858T	p.R286R	.	.	142	5	57	0	.	90
AP2A1	160	bcgsc.ca	37	19	50305311	50305311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	AP2A1	NM_130787	exon15	c.C2027A	p.A676E	.	.	2	2	25	0	.	92
APC2	10297	bcgsc.ca	37	19	1461986	1461986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	APC2	NM_005883	exon14	c.A1663G	p.S555G	.	.	59	4	390	0	.	290
APOH	350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	64222231	64222231	+	Missense_Mutation	SNP	G	G	A	rs55645281		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	APOH	NM_000042	exon3	c.C253T	p.P85S	.	.	111	76	33	0	.	90
ARAP2	116984	bcgsc.ca	37	4	36212342	36212342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ARAP2	NM_015230	exon6	c.A1157G	p.K386R	.	.	90	4	33	0	.	93
ARHGAP17	55114	bcgsc.ca	37	16	24979747	24979747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ARHGAP17	NM_001006634	exon6	c.T386C	p.V129A	.	.	114	5	57	0	.	227
ARSA	410	bcgsc.ca;mdanderson.org	37	22	51065802	51065802	+	Missense_Mutation	SNP	C	C	A	rs74315458	bycluster;alternate_allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ARSA	NM_001085426	exon3	c.G257T	p.R86L	.	.	9	3	57	0	.	92
ASXL1	171023	bcgsc.ca	37	20	31022236	31022236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ASXL1	NM_015338	exon12	c.T1721C	p.I574T	.	.	87	4	123	0	.	2057
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193061790	193061790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ATP13A5	NM_198505	exon9	c.C869T	p.P290L	.	.	209	96	41	0	.	144
ATXN1	6310	hgsc.bcm.edu	37	6	16327918	16327919	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ATXN1	NM_000332	exon8	c.624_625insGCA	p.Q208delinsQQ	.	.	77	18	244	0	.	93
AUTS2	26053	bcgsc.ca	37	7	70255297	70255297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	AUTS2	NM_015570	exon19	c.A3095G	p.H1032R	.	.	55	5	189	0	.	92
BPNT1	10380	ucsc.edu	37	1	220231330	220231330	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	BPNT1	.	.	.	.	.	.	97	1	24	0	.	91
C10orf32-AS3MT	0	ucsc.edu	37	10	104661224	104661224	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	7	1	20	0	.	.
C14orf79	122616	bcgsc.ca	37	14	105452958	105452958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	C14orf79	NM_174891	exon1	c.T190C	p.C64R	.	.	54	4	337	1	.	90
C16orf13	84326	bcgsc.ca	37	16	685707	685707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	C16orf13	NM_001040160	exon2	c.T265C	p.W89R	.	.	91	6	392	1	.	22
C1RL-AS1	283314	bcgsc.ca	37	12	7271624	7271624	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NR_026947	exon9	c.4958+2T>C	.	.	.	2	2	24	1	.	.
C21orf59	56683	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33974647	33974647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	C21orf59	NM_021254	exon6	c.A697G	p.I233V	.	.	67	21	85	1	.	90
C2	717	bcgsc.ca	37	6	31895743	31895743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	C2	NM_000063	exon2	c.T58C	p.S20P	.	.	107	5	338	0	.	92
C8B	732	bcgsc.ca	37	1	57417731	57417731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	C8B	NM_000066	exon5	c.A656G	p.Y219C	.	.	156	6	217	0	.	92
CACNA1C	775	bcgsc.ca	37	12	2566775	2566775	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CACNA1C	NM_001129831	exon5	c.G660A	p.G220G	.	.	76	5	346	0	.	34
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53707151	53707151	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CACNA1D	NM_001128840	exon8	c.C1218T	p.S406S	.	.	978	485	135	0	.	100
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	86114753	86114753	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CADM2	NM_001167674	exon9	c.1064-2A>G	.	.	.	249	110	46	0	.	228
CASP2	835	bcgsc.ca	37	7	142988686	142988686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CASP2	NM_032982	exon2	c.A128G	p.N43S	.	.	190	6	32	0	.	1083
CBL	867	bcgsc.ca	37	11	119077309	119077309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CBL	NM_005188	exon1	c.A182G	p.K61R	.	.	33	4	151	0	.	4020
CCRL1	51554	broad.mit.edu	37	3	132319326	132319326	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CCRL1	NM_178445	exon1	c.C85T	p.L29L	.	.	634	7	84	0	.	658
CD33	945	bcgsc.ca	37	19	51728684	51728684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CD33	NM_001772	exon2	c.A248G	p.Q83R	.	.	133	5	65	0	.	90
CD5	921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60893315	60893315	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CD5	NM_014207	exon10	c.1490+2T>A	.	.	.	36	19	132	0	.	91
CDC27	996	bcgsc.ca	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CDC27	NM_001114091	exon6	c.G601T	p.V201F	.	.	336	44	46	0	.	291
CDH4	1002	bcgsc.ca	37	20	60318646	60318646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CDH4	NM_001794	exon3	c.A197G	p.K66R	.	.	73	4	226	0	.	282
CEACAM18	729767	bcgsc.ca	37	19	51983896	51983896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CEACAM18	NM_001080405	exon3	c.A545G	p.N182S	.	.	52	4	157	0	.	23
CEP350	9857	broad.mit.edu	37	1	180044348	180044348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CEP350	NM_014810	exon28	c.A5759G	p.E1920G	.	.	364	7	90	0	.	26
CGREF1	10669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27325451	27325451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CGREF1	NM_001166239	exon3	c.C89A	p.S30Y	.	.	48	10	140	0	.	91
CHD7	55636	bcgsc.ca	37	8	61655437	61655437	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CHD7	NM_017780	exon2	c.T1446C	p.G482G	.	.	46	5	216	0	.	141
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143039472	143039472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CLCN1	NM_000083	exon16	c.A1804G	p.T602A	.	.	158	57	20	0	.	156
CLMN	79789	bcgsc.ca	37	14	95658041	95658041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CLMN	NM_024734	exon13	c.T2869C	p.S957P	.	.	16	3	47	0	.	90
CNNM1	26507	bcgsc.ca	37	10	101147743	101147743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CNNM1	NM_020348	exon8	c.A2507G	p.N836S	.	.	66	4	276	0	.	68
CNTN1	1272	broad.mit.edu	37	12	41327519	41327519	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CNTN1	NM_001256063	exon9	c.G824A	p.W275X	.	.	139	10	20	0	.	1149
CNTN6	27255	bcgsc.ca	37	3	1371595	1371595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CNTN6	NM_014461	exon11	c.C1340T	p.T447M	.	.	220	6	55	0	.	345
COL20A1	57642	bcgsc.ca	37	20	61938936	61938936	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	COL20A1	NM_020882	exon6	c.G591A	p.Q197Q	.	.	68	4	259	0	.	90
COX1	5742	bcgsc.ca	37	MT	6416	6416	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	ENST00000361624	exon1	c.513delA	p.I171fs	.	.	727	362	46	0	.	.
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148559613	148559613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CPB1	NM_001871	exon6	c.G478A	p.G160S	.	.	212	93	35	0	.	92
CR1	1378	broad.mit.edu	37	1	207787753	207787753	+	Nonsense_Mutation	SNP	C	C	T	rs55749440		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CR1	NM_000651	exon40	c.C6580T	p.R2194X	.	.	227	27	42	1	.	93
CREG2	200407	broad.mit.edu	37	2	101971781	101971781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CREG2	NM_153836	exon3	c.T659C	p.L220P	.	.	242	6	48	0	.	91
CSMD1	64478	bcgsc.ca	37	8	2818708	2818708	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CSMD1	NM_033225	exon62	c.T9657C	p.P3219P	.	.	75	4	49	0	.	86
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	113347573	113347574	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CSMD3	NM_198123	exon45	c.7150_7151insT	p.V2384fs	.	.	120	44	30	0	.	1132
CSNK1A1L	122011	bcgsc.ca	37	13	37678605	37678605	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CSNK1A1L	NM_145203	exon1	c.T789C	p.C263C	.	.	224	6	51	0	.	396
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	.	.	175	89	15	0	.	24361
CYB5R1	51706	bcgsc.ca	37	1	202932857	202932857	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CYB5R1	NM_016243	exon8	c.560-2A>G	.	.	.	120	5	45	0	.	91
CYB5R3	1727	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43024254	43024254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CYB5R3	NM_001171660	exon5	c.G466A	p.A156T	.	.	78	8	207	0	.	91
CYP2U1	113612	bcgsc.ca	37	4	108868592	108868592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CYP2U1	NM_183075	exon3	c.A1187G	p.D396G	.	.	155	7	174	0	.	90
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90318036	90318036	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DAPK1	NM_004938	exon25	c.G2964A	p.L988L	.	.	55	17	302	0	.	359
DCN	1634	bcgsc.ca	37	12	91552230	91552230	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DCN	NM_001920	exon4	c.T381C	p.P127P	.	.	231	7	31	0	.	555
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57646514	57646514	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_152678	exon7	c.C672T	p.H224H	.	.	400	170	103	0	.	.
DGKA	1606	bcgsc.ca	37	12	56333890	56333890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DGKA	NM_201554	exon10	c.A734G	p.Q245R	.	.	70	4	97	0	.	255
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231830097	231830097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DISC1	NM_001164541	exon2	c.C593A	p.T198N	.	.	114	21	450	0	.	91
DLL4	54567	bcgsc.ca	37	15	41223937	41223937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DLL4	NM_019074	exon4	c.G631A	p.G211S	.	.	53	4	168	1	.	636
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	46991020	46991020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DNAJA2	NM_005880	exon9	c.G1160T	p.R387M	.	.	143	66	18	0	.	226
DSPP	1834	bcgsc.ca	37	4	88536876	88536876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DSPP	NM_014208	exon5	c.G3062A	p.S1021N	.	.	121	14	766	10	.	90
DSPP	1834	mdanderson.org	37	4	88536460	88536460	+	Silent	SNP	C	C	T	rs199691318		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DSPP	NM_014208	exon5	c.C2646T	p.S882S	.	.	141	42	311	0	.	90
DST	667	ucsc.edu	37	6	56489341	56489341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DST	NM_001723	exon22	c.T3305C	p.L1102P	.	.	40	5	11	0	.	523
EBF2	64641	bcgsc.ca	37	8	25897570	25897570	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EBF2	NM_022659	exon5	c.T456C	p.V152V	.	.	47	5	226	1	.	26
EBNA1BP2	10969	ucsc.edu;bcgsc.ca	37	1	43637633	43637633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EBNA1BP2	NM_001159936	exon3	c.A239G	p.D80G	.	.	38	4	201	0	.	90
EFHB	151651	bcgsc.ca	37	3	19930027	19930027	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EFHB	NM_144715	exon10	c.T1842C	p.D614D	.	.	158	5	41	0	.	22
EHD3	30845	bcgsc.ca	37	2	31484461	31484461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EHD3	NM_014600	exon5	c.T962C	p.V321A	.	.	77	5	156	1	.	92
EHMT2	10919	bcgsc.ca	37	6	31856220	31856220	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EHMT2	NM_006709	exon12	c.C1429G	p.L477V	.	.	53	4	303	0	.	91
ELMSAN1	91748	broad.mit.edu;bcgsc.ca	37	14	74205467	74205467	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_194278	exon2	c.A1245G	p.R415R	.	.	95	5	451	1	.	.
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43435550	43435550	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EPG5	NM_020964	exon43	c.C7545G	p.P2515P	.	.	75	11	27	0	.	580
EPHA3	2042	broad.mit.edu;bcgsc.ca	37	3	89156983	89156983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EPHA3	NM_005233	exon1	c.G85A	p.E29K	.	.	87	5	216	1	.	1500
ERN1	2081	bcgsc.ca	37	17	62126546	62126546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ERN1	NM_001433	exon18	c.T2270C	p.I757T	.	.	73	4	122	0	.	784
EVX2	344191	bcgsc.ca	37	2	176945441	176945441	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EVX2	NM_001080458	exon3	c.C825A	p.P275P	.	.	39	4	166	0	.	70
EXOC6B	23233	bcgsc.ca	37	2	72802689	72802689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EXOC6B	NM_015189	exon7	c.A778G	p.S260G	.	.	223	6	39	0	.	68
EYS	346007	broad.mit.edu	37	6	65532608	65532608	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EYS	NM_001142800	exon20	c.T3100A	p.F1034I	.	.	156	6	20	0	.	660
FAM104B	90736	ucsc.edu	37	X	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	rs113263757		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FAM104B	NM_001166699	exon3	c.C238T	p.Q80X	.	.	66	8	25	3	.	130
FAM129A	116496	bcgsc.ca	37	1	184853925	184853925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FAM129A	NM_052966	exon5	c.A443G	p.E148G	.	.	77	5	78	0	.	94
FAM138D	677784	broad.mit.edu	37	12	148114	148114	+	RNA	SNP	C	C	T	rs7974215		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	3	2	35	0	C|1.000;|0.000	.
FAM13A	10144	ucsc.edu	37	4	89711767	89711767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FAM13A	NM_014883	exon9	c.C1061A	p.P354H	.	.	25	4	13	1	.	70
FAM13B	51306	bcgsc.ca	37	5	137278602	137278602	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_016603	exon21	c.T2484C	p.A828A	.	.	199	6	30	0	.	.
FAM205B	389715	broad.mit.edu	37	9	34835532	34835532	+	RNA	SNP	A	A	G	rs2988118	by2hit2allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	49	7	73	1	A|1.000;|0.000	.
FAM20B	9917	bcgsc.ca	37	1	179041252	179041252	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FAM20B	NM_014864	exon8	c.A1203G	p.E401E	.	.	105	5	262	0	.	93
FAM83C	128876	bcgsc.ca	37	20	33875074	33875074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FAM83C	NM_178468	exon4	c.A1508G	p.Q503R	.	.	71	4	194	0	.	92
FANCD2	2177	broad.mit.edu	37	3	10103877	10103877	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FANCD2	NM_001018115	exon20	c.C1809T	p.S603S	.	.	772	9	207	1	.	229
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	15937055	15937055	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FBXL7	NM_012304	exon4	c.1236delC	p.C412fs	.	.	69	17	329	0	.	228
FDXACB1	91893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111746748	111746748	+	Missense_Mutation	SNP	G	G	A	rs189903941		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FDXACB1	NM_138378	exon5	c.C773T	p.P258L	.	.	110	35	26	0	G|0.999;A|0.001	22
FHDC1	85462	ucsc.edu;bcgsc.ca	37	4	153897270	153897270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FHDC1	NM_033393	exon11	c.A2827G	p.N943D	.	.	44	4	244	0	.	136
FHOD1	29109	bcgsc.ca	37	16	67265940	67265940	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FHOD1	NM_013241	exon15	c.2202+2T>C	.	.	.	138	7	588	3	.	221
FKTN	2218	broad.mit.edu;bcgsc.ca	37	9	108397491	108397491	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FKTN	NM_006731	exon10	c.A1332G	p.Q444Q	.	.	272	8	42	0	.	155
FLYWCH1	84256	bcgsc.ca	37	16	2980668	2980668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FLYWCH1	NM_020912	exon4	c.C580A	p.L194M	.	.	2	2	24	0	.	22
FOLH1	2346	mdanderson.org	37	11	49208319	49208319	+	Silent	SNP	G	G	A	rs79155991	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FOLH1	NM_004476	exon5	c.C516T	p.G172G	.	.	317	87	58	5	G|0.983;A|0.017	579
FRG1	2483	bcgsc.ca;mdanderson.org	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FRG1	NM_004477	exon5	c.C409A	p.Q137K	.	.	468	35	123	2	.	90
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	RNA	SNP	G	G	A	rs7266938	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FRG1B	.	.	.	.	.	.	338	17	134	1	G|0.019;A|0.981	22
FRG1B	284802	broad.mit.edu	37	20	29625961	29625961	+	RNA	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FRG1B	.	.	.	.	.	.	448	14	69	1	.	22
FRG1B	284802	bcgsc.ca	37	20	29625875	29625875	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FRG1B	.	.	.	.	.	.	329	12	132	0	.	22
FRYL	285527	bcgsc.ca	37	4	48517259	48517259	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FRYL	NM_015030	exon56	c.A7723T	p.T2575S	.	.	159	5	37	0	.	69
GAREM	64762	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	29867589	29867589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_022751	exon4	c.A971G	p.H324R	.	.	110	25	285	1	.	.
GBX1	2636	bcgsc.ca	37	7	150845906	150845906	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GBX1	NM_001098834	exon2	c.T862C	p.L288L	.	.	92	5	250	0	.	68
GDPD4	220032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76969478	76969478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GDPD4	NM_182833	exon10	c.G817A	p.D273N	.	.	164	93	33	0	.	69
GJB1	2705	hgsc.bcm.edu;broad.mit.edu	37	X	70443636	70443637	+	In_Frame_Ins	INS	-	-	TCATCT	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GJB1	NM_001097642	exon2	c.79_80insTCATCT	p.V27delinsVIF	.	.	93	40	322	0	.	193
GLB1	2720	bcgsc.ca	37	3	33095009	33095009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GLB1	NM_000404	exon7	c.A766G	p.R256G	.	.	159	6	32	0	.	135
GMIP	51291	ucsc.edu;bcgsc.ca	37	19	19744903	19744903	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GMIP	NM_016573	exon19	c.A2181G	p.A727A	.	.	27	4	160	0	.	91
GNB5	10681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52476791	52476791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GNB5	NM_016194	exon2	c.A83T	p.K28M	.	.	77	37	25	0	.	227
GNMT	27232	bcgsc.ca	37	6	42929990	42929990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GNMT	NM_018960	exon2	c.A247G	p.T83A	.	.	86	5	298	0	.	514
GPR124	25960	bcgsc.ca	37	8	37699180	37699180	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GPR124	NM_032777	exon19	c.G3324A	p.P1108P	.	.	2	2	17	0	.	157
GRAMD4	23151	ucsc.edu;bcgsc.ca	37	22	47058978	47058978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GRAMD4	NM_015124	exon5	c.T508C	p.F170L	.	.	29	4	100	0	.	23
GRIN3B	116444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1004576	1004576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GRIN3B	NM_138690	exon3	c.G1076A	p.S359N	.	.	44	12	225	0	.	90
GUSBP11	91316	ucsc.edu	37	22	24037416	24037416	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	12	6	44	0	.	.
H2AFY	9555	bcgsc.ca	37	5	134696241	134696241	+	Silent	SNP	T	T	C	rs138537619	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	H2AFY	NM_138610	exon5	c.A534G	p.T178T	.	.	81	5	416	7	T|0.998;C|0.002	90
HAL	3034	bcgsc.ca	37	12	96368133	96368133	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HAL	NM_002108	exon21	c.T1851C	p.A617A	.	.	207	6	33	0	.	93
HDLBP	3069	bcgsc.ca	37	2	242174660	242174660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HDLBP	NM_005336	exon23	c.A3020G	p.H1007R	.	.	72	4	249	0	.	290
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65214794	65214794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HELZ	NM_014877	exon4	c.G127T	p.D43Y	.	.	169	33	31	0	.	92
HGS	9146	bcgsc.ca	37	17	79660948	79660948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HGS	NM_004712	exon11	c.T889C	p.S297P	.	.	48	4	221	3	.	91
HMGXB3	22993	bcgsc.ca	37	5	149417067	149417067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HMGXB3	NM_014983	exon13	c.A2390G	p.H797R	.	.	71	4	225	0	.	24
HSP90AA1	3320	broad.mit.edu	37	14	102551199	102551199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HSP90AA1	NM_001017963	exon6	c.A1166G	p.E389G	.	.	195	5	95	0	.	949
HTR7	3363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92508894	92508894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HTR7	NM_019860	exon2	c.G997A	p.V333I	.	.	156	43	252	0	.	91
IGFALS	3483	ucsc.edu;bcgsc.ca	37	16	1841215	1841215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	IGFALS	NM_001146006	exon2	c.C1318A	p.R440S	.	.	33	4	178	0	.	90
INO80C	125476	bcgsc.ca	37	18	33048673	33048673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	INO80C	NM_001098817	exon7	c.T589C	p.F197L	.	.	67	5	212	0	.	90
INTS4	92105	bcgsc.ca	37	11	77614650	77614650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	INTS4	NM_033547	exon17	c.T2033C	p.L678S	.	.	209	11	40	0	.	92
INTS4	92105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	77672039	77672039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	INTS4	NM_033547	exon5	c.A617T	p.D206V	.	.	195	23	53	0	.	92
JAK3	3718	bcgsc.ca	37	19	17943328	17943328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	JAK3	NM_000215	exon19	c.G2680A	p.G894S	.	.	60	4	122	0	.	2418
JSRP1	126306	bcgsc.ca	37	19	2252447	2252447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	JSRP1	NM_144616	exon7	c.C877T	p.R293W	.	.	18	3	109	1	.	91
JUNB	3726	bcgsc.ca	37	19	12902864	12902864	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	JUNB	NM_002229	exon1	c.C279T	p.P93P	.	.	29	4	118	0	.	846
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	124165646	124165646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KALRN	NM_003947	exon21	c.C3460G	p.L1154V	.	.	77	29	13	0	.	738
KATNB1	10300	ucsc.edu	37	16	57785936	57785936	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KATNB1	NM_005886	exon8	c.G601T	p.E201X	.	.	29	4	281	1	.	90
KCNH1	3756	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	211093326	211093326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KCNH1	NM_172362	exon7	c.A1118G	p.E373G	.	.	156	33	481	1	.	94
KCTD20	222658	hgsc.bcm.edu;mdanderson.org	37	6	36447368	36447368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KCTD20	NM_173562	exon5	c.G538T	p.D180Y	.	.	41	11	11	0	.	92
KHNYN	23351	bcgsc.ca	37	14	24902189	24902189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KHNYN	NM_015299	exon5	c.A1528G	p.T510A	.	.	129	5	29	0	.	93
KIAA0100	9703	bcgsc.ca	37	17	26962233	26962233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KIAA0100	NM_014680	exon16	c.A2372G	p.Q791R	.	.	68	5	212	0	.	93
KIAA1217	56243	bcgsc.ca	37	10	24790322	24790322	+	Missense_Mutation	SNP	T	T	C	rs147534872	alternate_allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KIAA1217	NM_019590	exon9	c.T1849C	p.S617P	.	.	50	4	147	0	T|1.000;A|0.000	98
KIAA1549L	25758	bcgsc.ca	37	11	33596330	33596330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_012194	exon9	c.T3422C	p.L1141S	.	.	137	5	299	2	.	.
KIAA2022	340533	bcgsc.ca	37	X	73961113	73961113	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KIAA2022	NM_001008537	exon3	c.A3279G	p.G1093G	.	.	126	6	40	0	.	183
KIF26A	26153	bcgsc.ca	37	14	104641737	104641737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KIF26A	NM_015656	exon12	c.C2612A	p.P871H	.	.	12	4	43	0	.	24
KIF5B	3799	bcgsc.ca	37	10	32327124	32327124	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KIF5B	NM_004521	exon6	c.T465C	p.V155V	.	.	85	4	42	0	.	399
KLF9	687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73027906	73027906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KLF9	NM_001206	exon1	c.C374G	p.S125C	.	.	149	42	558	0	.	90
LAMA1	284217	bcgsc.ca	37	18	6956697	6956697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LAMA1	NM_005559	exon56	c.A8032G	p.R2678G	.	.	59	4	123	0	.	149
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	129637033	129637033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LAMA2	NM_000426	exon26	c.G3862A	p.V1288I	.	.	52	11	12	0	.	162
LAMA3	3909	broad.mit.edu	37	18	21343420	21343420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LAMA3	NM_001127717	exon8	c.A1115G	p.E372G	.	.	241	6	76	0	.	100
LAMB4	22798	bcgsc.ca	37	7	107696284	107696284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LAMB4	NM_007356	exon25	c.A3548G	p.D1183G	.	.	143	6	166	0	.	140
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	33960897	33960897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LARGE	NM_004737	exon7	c.G724A	p.D242N	.	.	119	46	13	0	.	92
LCK	3932	bcgsc.ca	37	1	32751170	32751170	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LCK	NM_005356	exon13	c.C1383T	p.R461R	.	.	61	4	313	0	.	1378
LCT	3938	bcgsc.ca	37	2	136567509	136567509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LCT	NM_002299	exon8	c.A2408G	p.D803G	.	.	165	5	244	2	.	101
LILRB5	10990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54760149	54760149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LILRB5	NM_001081442	exon4	c.G412A	p.G138R	.	.	35	10	96	1	.	92
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56998712	56998712	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LMAN1	NM_005570	exon12	c.G1434T	p.T478T	.	.	185	21	40	0	.	91
LMO7	4008	bcgsc.ca	37	13	76378606	76378606	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LMO7	NM_005358	exon9	c.A999G	p.P333P	.	.	186	6	49	0	.	586
LOC100289473	0	bcgsc.ca	37	20	1759266	1759266	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	2	2	18	0	.	.
LOC146880	0	broad.mit.edu	37	17	62778070	62778070	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	5	3	35	0	.	.
LOXL4	84171	bcgsc.ca	37	10	100016550	100016550	+	Missense_Mutation	SNP	A	A	G	rs146839149	alternate_allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LOXL4	NM_032211	exon9	c.T1415C	p.I472T	.	.	49	4	123	0	A|1.000;T|0.000	230
LRRN4	164312	bcgsc.ca	37	20	6031465	6031465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LRRN4	NM_152611	exon3	c.T820C	p.F274L	.	.	128	5	159	0	.	93
MAP2K4	6416	bcgsc.ca	37	17	12032581	12032581	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MAP2K4	NM_003010	exon9	c.T1017C	p.S339S	.	.	123	6	37	0	.	3134
MARK4	57787	bcgsc.ca	37	19	45766614	45766614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MARK4	NM_001199867	exon4	c.A344G	p.H115R	.	.	68	4	327	0	.	782
MARVELD3	91862	bcgsc.ca	37	16	71668485	71668485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MARVELD3	NM_052858	exon3	c.T985C	p.S329P	.	.	48	4	283	1	.	91
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73020290	73020290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MLXIPL	NM_032954	exon6	c.T770C	p.F257S	.	.	54	28	220	1	.	91
MRAP2	112609	bcgsc.ca	37	6	84799070	84799070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MRAP2	NM_138409	exon4	c.A488G	p.K163R	.	.	86	4	43	0	.	92
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1077628	1077628	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MUC2	NM_002457	exon3	c.G378A	p.L126L	.	.	82	22	382	1	.	90
MUC6	4588	bcgsc.ca	37	11	1016906	1016906	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MUC6	NM_005961	exon31	c.C5895A	p.P1965P	.	.	1488	77	4753	52	.	23
MYO10	4651	broad.mit.edu	37	5	16670813	16670813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MYO10	NM_012334	exon39	c.A5705G	p.K1902R	.	.	97	4	302	1	.	3
MYO18A	399687	bcgsc.ca	37	17	27419892	27419892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MYO18A	NM_078471	exon33	c.T5054C	p.I1685T	.	.	217	6	448	0	.	22
MYO1A	4640	bcgsc.ca	37	12	57431678	57431678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MYO1A	NM_005379	exon18	c.T1936C	p.W646R	.	.	57	4	255	0	.	231
NACA	4666	bcgsc.ca	37	12	57109856	57109856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NACA	NM_001113203	exon5	c.T1999C	p.S667P	.	.	153	7	349	3	.	254
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	19955620	19955620	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NAV2	NM_001244963	exon8	c.C1899G	p.S633S	.	.	50	30	316	0	.	96
NBPF9	400818	bcgsc.ca	37	1	144828748	144828748	+	Silent	SNP	C	C	T	rs2312473	bycluster;by2hit2allele;byhapmap	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	441	38	60	1	.	.
NBPF9	400818	broad.mit.edu	37	1	144816621	144816621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	557	26	66	1	.	.
NBPF9	400818	broad.mit.edu	37	1	144828548	144828548	+	Missense_Mutation	SNP	G	G	A	rs2938627		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	284	24	55	3	.	.
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3591	3591	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	ENST00000361390	exon1	c.G285A	p.L95L	.	.	759	70	43	0	.	.
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	12009	12009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	ENST00000361381	exon1	c.G1250A	p.G417D	.	.	859	20	76	1	.	.
NEK4	6787	broad.mit.edu	37	3	52771613	52771613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NEK4	NM_003157	exon15	c.T2422C	p.F808L	.	.	350	7	90	0	.	358
NELFA	7469	bcgsc.ca	37	4	1987515	1987515	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_005663	exon7	c.G945A	p.L315L	.	.	50	4	228	0	.	.
NEUROD4	58158	ucsc.edu;mdanderson.org	37	12	55420793	55420793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NEUROD4	NM_021191	exon2	c.T570C	p.S190S	.	.	43	8	17	0	.	94
NFKB1	4790	bcgsc.ca	37	4	103527782	103527782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NFKB1	NM_003998	exon17	c.C1882T	p.H628Y	.	.	217	7	86	0	.	912
NFRKB	4798	broad.mit.edu;bcgsc.ca	37	11	129762615	129762615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NFRKB	NM_006165	exon1	c.G169A	p.E57K	.	.	81	5	138	0	.	93
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5811266	5811266	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NLGN4X	NM_181332	exon6	c.C2043T	p.V681V	.	.	252	95	597	1	.	195
NTM	50863	bcgsc.ca	37	11	131240742	131240742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NTM	NM_001048209	exon1	c.G41T	p.W14L	.	.	149	6	58	0	.	95
NUDC	10726	bcgsc.ca	37	1	27269167	27269167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NUDC	NM_006600	exon5	c.A446G	p.E149G	.	.	158	5	386	1	.	91
NXPE4	54827	bcgsc.ca	37	11	114453716	114453716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_001077639	exon3	c.T124C	p.S42P	.	.	145	5	148	1	.	.
OCRL	4952	bcgsc.ca	37	X	128674737	128674737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	OCRL	NM_000276	exon2	c.A56G	p.E19G	.	.	75	4	467	3	.	206
OR2T27	403239	ucsc.edu;bcgsc.ca	37	1	248813271	248813271	+	Silent	SNP	C	C	A	rs2802081	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	OR2T27	NM_001001824	exon1	c.G915T	p.V305V	.	.	78	27	22	1	C|0.968;A|0.032	47
OR51I2	390064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5474986	5474986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	OR51I2,NS,carcinoma,-1	OR51I2	NM_001004754	exon1	c.C268T	p.R90C	.	.	123	28	97	0	.	72
ORM1	5004	bcgsc.ca	37	9	117087108	117087108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ORM1	NM_000607	exon4	c.A367G	p.R123G	.	.	101	5	151	0	.	90
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	125313601	125313605	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	CTCTC	CTCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	OSBPL11	NM_022776	exon1	c.40_44del	p.14_15del	.	.	155	36	392	0	.	135
PABPC1	26986	bcgsc.ca	37	8	101718987	101718987	+	Silent	SNP	G	G	A	rs62513923		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PABPC1	NM_002568	exon11	c.C1494T	p.A498A	.	.	166	47	333	9	.	68
PABPC1	26986	bcgsc.ca	37	8	101719004	101719004	+	Missense_Mutation	SNP	G	G	A	rs62513924		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PABPC1	NM_002568	exon11	c.C1477T	p.R493C	.	.	141	30	309	7	.	68
PABPC3	5042	bcgsc.ca	37	13	25671062	25671062	+	Silent	SNP	A	A	G	rs78534836	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PABPC3	NM_030979	exon1	c.A726G	p.E242E	.	.	174	27	33	0	A|0.939;G|0.061	72
PABPC3	5042	bcgsc.ca	37	13	25671089	25671089	+	Missense_Mutation	SNP	G	G	T	rs75281454	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PABPC3	NM_030979	exon1	c.G753T	p.M251I	.	.	186	27	35	0	G|0.949;T|0.051	72
PABPC3	5042	bcgsc.ca	37	13	25671122	25671122	+	Silent	SNP	C	C	T	rs79072440	bycluster;byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PABPC3	NM_030979	exon1	c.C786T	p.Y262Y	.	.	217	18	41	0	C|0.999;T|0.001	72
PAF1	54623	bcgsc.ca	37	19	39879230	39879230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PAF1	NM_019088	exon10	c.A827G	p.E276G	.	.	139	5	72	0	.	69
PARD3B	117583	bcgsc.ca	37	2	206265820	206265820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PARD3B	NM_205863	exon19	c.T2714C	p.L905P	.	.	153	5	37	0	.	140
PBRM1	55193	broad.mit.edu	37	3	52677319	52677319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PBRM1	NM_018313	exon10	c.T940C	p.S314P	.	.	350	7	51	0	.	575
PDE4B	5142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66723358	66723358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PDE4B	NM_001037341	exon5	c.T505G	p.F169V	.	.	252	164	50	0	.	92
PDE9A	5152	bcgsc.ca	37	21	44189240	44189240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PDE9A	NM_002606	exon17	c.T1565C	p.I522T	.	.	101	5	64	0	.	92
PEX5	5830	bcgsc.ca	37	12	7356071	7356071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PEX5	NM_001131023	exon10	c.A935G	p.E312G	.	.	154	6	56	0	.	91
PGAP2	27315	bcgsc.ca	37	11	3845291	3845291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PGAP2	NM_001256236	exon5	c.T698C	p.L233P	.	.	123	5	603	2	.	90
PHLDA1	22822	bcgsc.ca	37	12	76426120	76426120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PHLDA1	.	.	.	.	.	.	2	2	19	0	.	90
PIK3R2	5296	bcgsc.ca	37	19	18279970	18279970	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PIK3R2	NM_005027	exon16	c.C2053T	p.L685L	.	.	28	4	150	0	.	1311
PIKFYVE	200576	bcgsc.ca	37	2	209216083	209216083	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PIKFYVE	NM_015040	exon38	c.A5619G	p.R1873R	.	.	113	5	31	0	.	583
PKDREJ	10343	broad.mit.edu	37	22	46652544	46652544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PKDREJ	NM_006071	exon1	c.G6676A	p.G2226R	.	.	175	5	28	0	.	156
PMEL	6490	bcgsc.ca	37	12	56351818	56351818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PMEL	NM_001200054	exon5	c.A520G	p.T174A	.	.	65	5	251	1	.	92
PPARA	5465	bcgsc.ca	37	22	46615754	46615754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PPARA	NM_001001928	exon6	c.A554G	p.K185R	.	.	96	4	61	0	.	611
PPM1E	22843	bcgsc.ca	37	17	56833815	56833815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PPM1E	NM_014906	exon1	c.T457C	p.Y153H	.	.	64	4	329	0	.	291
PPOX	5498	bcgsc.ca	37	1	161138831	161138831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PPOX	NM_000309	exon7	c.A665G	p.E222G	.	.	72	4	243	0	.	91
PPP1R13B	23368	bcgsc.ca	37	14	104205256	104205256	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PPP1R13B	NM_015316	exon13	c.A2697G	p.G899G	.	.	51	4	292	0	.	227
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6335429	6335429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PPP2R2C	NM_181876	exon7	c.C820T	p.R274C	.	.	103	26	434	1	.	1084
PQBP1	10084	bcgsc.ca	37	X	48759298	48759298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PQBP1	NM_001167989	exon4	c.A271G	p.K91E	.	.	70	4	133	0	.	193
PRDX5	25824	bcgsc.ca	37	11	64088536	64088536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PRDX5	NM_012094	exon5	c.A535G	p.K179E	.	.	107	5	119	0	.	153
PRELID1	27166	bcgsc.ca;mdanderson.org	37	5	176731012	176731012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PRELID1	NM_013237	exon1	c.G26T	p.S9I	.	.	9	3	54	0	.	90
PRRC2A	7916	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31597547	31597547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PRRC2A	NM_004638	exon14	c.C2179T	p.P727S	.	.	115	73	427	3	.	156
PRSS3	5646	bcgsc.ca	37	9	33799026	33799026	+	Missense_Mutation	SNP	C	C	G	rs148495550	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PRSS3	NM_007343	exon5	c.C763G	p.R255G	.	.	192	58	470	6	C|0.976;G|0.024	90
PRSS3	5646	bcgsc.ca	37	9	33799043	33799043	+	Silent	SNP	T	T	A	rs142813493	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PRSS3	NM_007343	exon5	c.T780A	p.P260P	.	.	202	52	527	3	T|0.998;A|0.002	90
PTPRF	5792	ucsc.edu;bcgsc.ca	37	1	44069357	44069357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PTPRF	NM_002840	exon16	c.A2534G	p.E845G	.	.	46	4	178	0	.	232
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121684588	121684588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PTPRZ1	NM_002851	exon23	c.C6050T	p.P2017L	.	.	138	24	27	0	.	699
PUS10	150962	broad.mit.edu	37	2	61180251	61180251	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PUS10	NM_144709	exon16	c.1191-2A>G	.	.	.	463	7	121	0	.	291
PXDN	7837	bcgsc.ca	37	2	1642658	1642658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PXDN	NM_012293	exon21	c.T4166C	p.V1389A	.	.	128	5	171	0	.	166
RAB7A	7879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128516808	128516808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RAB7A	NM_004637	exon3	c.A76G	p.N26D	.	.	205	33	29	0	.	227
RALGDS	5900	bcgsc.ca	37	9	135977864	135977864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RALGDS	NM_006266	exon14	c.G2008T	p.D670Y	.	.	62	4	274	0	.	722
RAX	30062	bcgsc.ca	37	18	56936312	56936312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RAX	NM_013435	exon3	c.A965G	p.N322S	.	.	60	4	326	0	.	90
RBL2	5934	ucsc.edu	37	16	53499470	53499470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RBL2	NM_005611	exon13	c.G1819A	p.E607K	.	.	111	1	32	0	.	841
REPS1	85021	bcgsc.ca	37	6	139266440	139266440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	REPS1	NM_001128617	exon4	c.A544G	p.S182G	.	.	122	5	238	0	.	522
RHBG	57127	bcgsc.ca	37	1	156351231	156351231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RHBG	NM_020407	exon5	c.A767G	p.Y256C	.	.	80	5	305	0	.	92
RHOU	58480	bcgsc.ca	37	1	228879150	228879150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RHOU	NM_021205	exon3	c.T440C	p.I147T	.	.	150	5	102	0	.	659
RNF213	57674	bcgsc.ca	37	17	78321744	78321744	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RNF213	NM_001256071	exon29	c.A9609G	p.A3203A	.	.	65	4	172	1	.	577
RNR2	6053	broad.mit.edu	37	MT	2896	2896	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	783	146	25	0	.	.
RTEL1	51750	bcgsc.ca	37	20	62305331	62305331	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RTEL1	NM_032957	exon10	c.T876C	p.T292T	.	.	184	8	376	1	.	44
RTL1	388015	bcgsc.ca	37	14	101348211	101348211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RTL1	NM_001134888	exon1	c.T2915C	p.F972S	.	.	85	4	207	0	.	46
RWDD2B	10069	bcgsc.ca	37	21	30378918	30378918	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RWDD2B	NM_016940	exon5	c.T780C	p.P260P	.	.	222	6	46	0	.	68
RXRA	6256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137328351	137328351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RXRA	NM_002957	exon10	c.C1280T	p.S427F	.	.	78	23	284	0	.	188
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33166198	33166198	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RXRB	NM_021976	exon3	c.527delC	p.P176fs	.	.	57	32	180	0	.	189
SAMD4A	23034	bcgsc.ca	37	14	55168997	55168997	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SAMD4A	NM_015589	exon2	c.A414G	p.E138E	.	.	58	4	215	1	.	90
SASH1	23328	bcgsc.ca	37	6	148840754	148840754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SASH1	NM_015278	exon10	c.A934G	p.K312E	.	.	75	4	296	2	.	90
SCP2	6342	bcgsc.ca	37	1	53493650	53493650	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SCP2	NM_002979	exon13	c.A1245G	p.R415R	.	.	147	6	37	0	.	153
SCUBE3	222663	ucsc.edu;bcgsc.ca	37	6	35209660	35209660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SCUBE3	NM_152753	exon12	c.A1390G	p.N464D	.	.	42	4	106	0	.	91
SDHAP1	255812	broad.mit.edu	37	3	195704091	195704091	+	RNA	SNP	T	T	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	285	84	186	0	.	.
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83021890	83021890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SEMA3E	NM_012431	exon14	c.A1648G	p.T550A	.	.	153	76	44	0	.	93
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48063289	48063289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SEMA6D	NM_153618	exon19	c.C2529A	p.N843K	.	.	111	36	23	0	.	138
SENP5	205564	ucsc.edu	37	3	196613075	196613075	+	Silent	SNP	C	C	T	rs34533379	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SENP5	NM_152699	exon2	c.C1023T	p.D341D	.	.	113	45	17	0	C|0.751;T|0.249	659
SERPINB1	1992	bcgsc.ca	37	6	2838151	2838151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SERPINB1	NM_030666	exon4	c.A389G	p.K130R	.	.	241	7	71	0	.	292
SERPINB8	5271	bcgsc.ca	37	18	61654232	61654232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SERPINB8	NM_198833	exon7	c.T845C	p.F282S	.	.	131	5	76	0	.	226
SGCE	8910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	94232701	94232701	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SGCE	NM_001099401	exon6	c.A726T	p.P242P	.	.	292	107	47	0	.	91
SGTA	6449	ucsc.edu;bcgsc.ca	37	19	2761469	2761469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SGTA	NM_003021	exon8	c.T688C	p.F230L	.	.	36	4	206	0	.	91
SIN3A	25942	bcgsc.ca	37	15	75722586	75722586	+	Missense_Mutation	SNP	A	A	G	rs141435592		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SIN3A	NM_001145358	exon2	c.T131C	p.V44A	.	.	78	4	227	0	A|1.000;G|0.000	230
SIX2	10736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45233509	45233509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SIX2	NM_016932	exon2	c.T676A	p.S226T	.	.	16	12	114	0	.	91
SLC25A5	292	bcgsc.ca	37	X	118603830	118603830	+	Silent	SNP	A	A	G	rs73637847	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SLC25A5	NM_001152	exon2	c.A318G	p.R106R	.	.	154	30	379	9	A|0.970;G|0.030	131
SLITRK1	114798	ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454187	84454187	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SLITRK1	NM_052910	exon1	c.C1456T	p.L486L	.	.	122	26	211	2	.	94
SMARCA2	6595	bcgsc.ca	37	9	2161820	2161820	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SMARCA2	NM_139045	exon28	c.C4116A	p.P1372P	.	.	96	5	59	0	.	653
SMC2	10592	bcgsc.ca	37	9	106873987	106873987	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SMC2	NM_006444	exon10	c.T1146C	p.A382A	.	.	150	5	30	0	.	210
SMCO3	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14959587	14959587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_001013698	exon2	c.G28C	p.E10Q	.	.	94	72	41	0	.	.
SMG6	23293	bcgsc.ca	37	17	2202373	2202373	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SMG6	NM_017575	exon2	c.T1674C	p.P558P	.	.	89	5	384	3	.	228
SNED1	25992	bcgsc.ca	37	2	241969765	241969765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SNED1	NM_001080437	exon2	c.C278A	p.P93H	.	.	135	6	439	0	.	72
SOAT1	6646	bcgsc.ca	37	1	179312723	179312723	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOAT1	NM_003101	exon10	c.942-2A>G	.	.	.	145	5	31	0	.	515
SOCS6	9306	hgsc.bcm.edu	37	18	67992585	67992606	+	Frame_Shift_Del	DEL	AGATGAGGGGATGTATCCTTTG	AGATGAGGGGATGTATCCTTTG	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	AGATGAGGGGATGTATCCTTTG	AGATGAGGGGATGTATCCTTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.681_702del	p.227_234del	.	.	110	0	185	0	.	721
SOCS6	9306	hgsc.bcm.edu	37	18	67992605	67992606	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.701_702insC	p.L234fs	.	.	124	34	236	0	.	721
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	67992584	67992585	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.680_681insC	p.L227fs	.	.	110	33	185	0	.	721
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	67992586	67992606	+	In_Frame_Del	DEL	GATGAGGGGATGTATCCTTTG	GATGAGGGGATGTATCCTTTG	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	GATGAGGGGATGTATCCTTTG	GATGAGGGGATGTATCCTTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.682_702del	p.228_234del	.	.	98	28	186	0	.	721
SORCS2	57537	bcgsc.ca	37	4	7640089	7640089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SORCS2	NM_020777	exon4	c.A683G	p.D228G	.	.	50	4	215	0	.	91
SPAG17	200162	bcgsc.ca	37	1	118535137	118535137	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SPAG17	NM_206996	exon36	c.T5313C	p.H1771H	.	.	228	6	30	0	.	158
SPATA31D5P	347127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84530717	84530717	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	97	32	43	0	.	.
SPRY4	81848	bcgsc.ca	37	5	141694666	141694666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SPRY4	NM_030964	exon3	c.C77A	p.P26H	.	.	26	5	136	0	.	659
SPTBN5	51332	bcgsc.ca	37	15	42178229	42178229	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SPTBN5	NM_016642	exon7	c.T1119C	p.A373A	.	.	59	4	211	0	.	91
SSTR5-AS1	146336	bcgsc.ca	37	16	1114500	1114500	+	RNA	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	.	.	.	2	2	17	0	.	.
STON1	11037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48809395	48809395	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	STON1	NM_001198595	exon3	c.G1623A	p.V541V	.	.	285	43	56	0	.	91
SUDS3	64426	ucsc.edu	37	12	118848953	118848953	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SUDS3	NM_022491	exon11	c.A879G	p.G293G	.	.	33	5	12	0	.	90
SYDE1	85360	bcgsc.ca	37	19	15222216	15222216	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SYDE1	NM_033025	exon5	c.T1383C	p.S461S	.	.	79	6	365	0	.	92
SYNE3	161176	ucsc.edu;bcgsc.ca	37	14	95923645	95923645	+	Silent	SNP	G	G	T	rs187376318	alternate_allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_152592	exon4	c.C658A	p.R220R	.	.	35	4	283	0	G|0.999;A|0.000	.
SYNM	23336	bcgsc.ca	37	15	99653821	99653821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SYNM	.	.	.	.	.	.	55	4	170	0	.	26
SYT2	127833	bcgsc.ca	37	1	202569600	202569600	+	Silent	SNP	C	C	A	rs115267501	byfrequency;alternate_allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SYT2	NM_177402	exon7	c.G804T	p.P268P	.	.	48	4	157	0	C|0.967;T|0.033	93
SZT2	23334	bcgsc.ca	37	1	43907483	43907483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SZT2	NM_015284	exon54	c.A7565G	p.Q2522R	.	.	70	4	111	0	.	144
TACR2	6865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71175920	71175920	+	Missense_Mutation	SNP	C	C	T	rs151093941		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TACR2	NM_001057	exon1	c.G160A	p.V54I	.	.	99	16	431	1	C|1.000;T|0.000	522
TBC1D14	57533	bcgsc.ca	37	4	7000838	7000838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TBC1D14	NM_001113361	exon6	c.A1072G	p.K358E	.	.	126	5	33	0	.	92
TBC1D8	11138	bcgsc.ca	37	2	101643864	101643864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TBC1D8	NM_001102426	exon15	c.A2456G	p.E819G	.	.	89	5	77	0	.	25
TBX3	6926	ucsc.edu;bcgsc.ca	37	12	115112603	115112603	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TBX3	NM_016569	exon7	c.C1137T	p.A379A	.	.	41	4	194	0	.	93
TCEB3B	51224	bcgsc.ca	37	18	44560822	44560822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TCEB3B	NM_016427	exon1	c.A814G	p.R272G	.	.	86	5	350	1	.	156
TDRD3	81550	bcgsc.ca	37	13	61141660	61141660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TDRD3	NM_001146070	exon13	c.A2120G	p.E707G	.	.	90	5	44	0	.	516
TEC	7006	bcgsc.ca	37	4	48151622	48151622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TEC	NM_003215	exon11	c.T958C	p.F320L	.	.	218	6	48	0	.	1004
TEKT2	27285	bcgsc.ca	37	1	36553346	36553346	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TEKT2	NM_014466	exon9	c.C1017A	p.T339T	.	.	66	4	435	2	.	90
TEX13A	56157	bcgsc.ca	37	X	104463981	104463981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TEX13A	NM_031274	exon5	c.T895C	p.S299P	.	.	128	5	154	0	.	132
TF	7018	ucsc.edu	37	3	133478018	133478018	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TF	NM_001063	exon9	c.1049-1G>T	.	.	.	94	1	49	0	.	92
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32956067	32956067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TMEM132E	NM_207313	exon5	c.C912A	p.D304E	.	.	138	27	466	0	.	68
TP63	8626	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	189349323	189349323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TP63	NM_001114979	exon1	c.C19T	p.R7W	.	.	112	9	17	0	.	421
TPTE2	93492	broad.mit.edu	37	13	20025336	20025336	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TPTE2	NM_199254	exon12	c.T771C	p.H257H	.	.	72	5	11	0	.	92
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67067941	67067941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TRIM55	NM_033058	exon10	c.A1608C	p.L536F	.	.	253	120	59	0	.	230
TSHR	7253	bcgsc.ca	37	14	81606134	81606134	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TSHR	NM_000369	exon9	c.T804C	p.S268S	.	.	103	5	32	0	.	1650
TSTA3	7264	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144698895	144698895	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TSTA3	.	.	.	.	.	.	82	47	148	0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179559565	179559565	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TTN	NM_001267550	exon116	c.G31339C	p.V10447L	.	.	339	126	53	0	.	636
TVP23B	51030	broad.mit.edu;mdanderson.org	37	17	18694221	18694221	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_016078	exon3	c.A108G	p.A36A	.	.	240	28	47	0	.	.
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96599294	96599294	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	UGGT2	NM_020121	exon15	c.A1674G	p.V558V	.	.	261	105	39	0	.	92
VARS2	57176	bcgsc.ca	37	6	30889436	30889436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	VARS2	NM_001167734	exon18	c.G1793A	p.G598E	.	.	92	5	316	0	.	26
VPS13A	23230	bcgsc.ca	37	9	79954488	79954488	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	VPS13A	NM_001018038	exon48	c.T6435C	p.T2145T	.	.	114	5	33	0	.	161
VPS33A	65082	bcgsc.ca	37	12	122750919	122750919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	VPS33A	NM_022916	exon1	c.A37G	p.N13D	.	.	39	4	204	2	.	91
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27739169	27739169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	WASF2	NM_006990	exon7	c.G721A	p.V241M	.	.	228	88	49	0	.	228
WDYHV1	55093	broad.mit.edu	37	8	124449518	124449518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	WDYHV1	NM_018024	exon5	c.A452G	p.D151G	.	.	95	7	27	0	.	92
ZBTB1	22890	bcgsc.ca	37	14	64988856	64988856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZBTB1	NM_014950	exon2	c.T634C	p.F212L	.	.	183	6	42	0	.	91
ZFHX3	463	bcgsc.ca	37	16	72993047	72993047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZFHX3	NM_006885	exon2	c.A998G	p.K333R	.	.	83	5	121	0	.	72
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90487903	90487903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZNF326	NM_182976	exon11	c.A1400C	p.K467T	.	.	395	76	72	0	.	91
ZNF557	79230	bcgsc.ca	37	19	7076469	7076469	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZNF557	NM_001044387	exon5	c.A198G	p.T66T	.	.	113	6	274	0	.	92
ZNF775	285971	bcgsc.ca	37	7	150093738	150093738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZNF775	NM_173680	exon3	c.A169G	p.M57V	.	.	82	4	285	0	.	90
ZNF836	162962	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52658231	52658231	+	Missense_Mutation	SNP	C	C	T	rs61744685	byfrequency	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZNF836	NM_001102657	exon5	c.G2705A	p.R902H	.	.	266	68	48	0	C|0.993;T|0.007	46
SMIM7	79086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16770916	16770917	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	p.I2K	.	.	.	.	.	.	.	
HSPA9	3313	hgsc.bcm.edu	37	5	137902698	137902699	+	Missense_Mutation	DNP	TG	TG	GT	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	p.FK290LQ	.	.	.	.	.	.	.	
MAGEC1	9947	bcgsc.ca	37	X	140994017	140994018	+	Missense_Mutation	DNP	TC	TC	CG	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	p.F276S	.	.	.	.	.	.	.	
