Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AAK1	22848	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69757151	69757151	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AAK1	NM_014911	exon8	c.A860T	p.H287L	.	.	163	61	215	1	.	333
ABCB9	23457	bcgsc.ca	37	12	123433325	123433325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ABCB9	NM_019625	exon5	c.T899C	p.V300A	.	.	151	9	171	2	.	90
ACAT2	39	bcgsc.ca	37	6	160199779	160199779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ACAT2	NM_005891	exon9	c.A1112G	p.E371G	.	.	75	4	123	0	.	91
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185709825	185709825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ACSL1	NM_001995	exon3	c.T256A	p.Y86N	.	.	40	16	49	0	.	92
ACVR1C	130399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158390474	158390474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ACVR1C	NM_145259	exon9	c.A1438G	p.K480E	.	.	64	25	54	0	.	1006
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70925176	70925176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAM21	NM_003813	exon2	c.T960G	p.I320M	.	.	178	82	223	0	.	92
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43792900	43792900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAMTS20	NM_025003	exon29	c.G4421T	p.C1474F	.	.	147	51	177	0	.	795
ADAMTS5	11096	bcgsc.ca	37	21	28302304	28302304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAMTS5	NM_007038	exon7	c.A2126G	p.D709G	.	.	131	5	143	0	.	229
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	64579956	64579956	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAMTS9	NM_182920	exon28	c.G4334A	p.W1445X	.	.	144	55	148	0	.	230
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49170256	49170256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADCY6	NM_020983	exon7	c.A1490G	p.N497S	.	.	95	36	131	0	.	90
AGMO	392636	bcgsc.ca	37	7	15240937	15240937	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AGMO	NM_001004320	exon13	c.A1311G	p.K437K	.	.	48	4	64	0	.	69
AGPAT6	137964	bcgsc.ca	37	8	41468312	41468312	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AGPAT6	NM_178819	exon5	c.A594G	p.G198G	.	.	134	8	281	2	.	90
AKT1	207	bcgsc.ca	37	14	105237128	105237128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AKT1	NM_005163	exon13	c.T1317C	p.D439D	.	.	163	5	188	0	.	9189
AMOTL2	51421	broad.mit.edu;bcgsc.ca	37	3	134085173	134085173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AMOTL2	NM_016201	exon4	c.A1138G	p.M380V	.	.	242	7	232	0	.	135
ANAPC5	51433	bcgsc.ca	37	12	121784721	121784721	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ANAPC5	NM_016237	exon3	c.G375A	p.E125E	.	.	91	4	98	0	.	290
ANGPTL1	9068	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178820448	178820448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ANGPTL1	NM_004673	exon6	c.A1292G	p.N431S	.	.	175	91	119	0	.	90
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	432029	432029	+	Missense_Mutation	SNP	C	C	T	rs139380371		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ANO9	NM_001012302	exon5	c.G376A	p.V126I	.	.	89	30	86	0	C|1.000;T|0.000	227
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201478589	201478589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AOX1	NM_001159	exon15	c.T1511G	p.L504W	.	.	178	67	159	0	.	96
AP1G1	164	bcgsc.ca	37	16	71783809	71783809	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AP1G1	NM_001030007	exon16	c.A1494G	p.E498E	.	.	69	4	76	0	.	92
AP3S1	1176	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115249063	115249063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AP3S1	NM_001284	exon6	c.G458C	p.G153A	.	.	97	22	110	1	.	90
APBB2	323	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	41015987	41015987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	APBB2	NM_173075	exon6	c.A448G	p.I150V	.	.	147	60	184	1	.	92
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21231070	21231070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	APOB	NM_000384	exon26	c.C8670A	p.F2890L	.	.	141	53	157	0	.	175
ARHGAP12	94134	bcgsc.ca	37	10	32098218	32098218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ARHGAP12	NM_018287	exon17	c.A2068G	p.I690V	.	.	161	6	213	2	.	227
ARHGAP23	57636	broad.mit.edu	37	17	36654048	36654048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ARHGAP23	NM_001199417	exon21	c.G3298A	p.E1100K	.	.	428	5	424	0	.	205
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100808329	100808329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ARMCX1	NM_016608	exon4	c.C416A	p.A139E	.	.	73	35	92	0	.	134
ASCC2	84164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30218403	30218403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ASCC2	NM_032204	exon5	c.C462A	p.F154L	.	.	78	31	89	0	.	90
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52548363	52548363	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ATP7B	NM_000053	exon2	c.C993T	p.A331A	.	.	38	7	69	0	.	92
ATP8A2	51761	broad.mit.edu	37	13	26151227	26151227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ATP8A2	NM_016529	exon20	c.T1733C	p.V578A	.	.	61	5	117	0	.	138
BBS9	27241	bcgsc.ca	37	7	33380583	33380583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	BBS9	NM_014451	exon11	c.T1273C	p.S425P	.	.	81	4	75	0	.	230
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32602706	32602706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	BIRC6	NM_016252	exon2	c.G376T	p.V126F	.	.	157	37	167	0	.	233
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93722349	93722349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	BTAF1	NM_003972	exon12	c.C1318G	p.Q440E	.	.	375	150	405	0	.	92
C1orf173	127254	broad.mit.edu	37	1	75065558	75065558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	C1orf173	NM_001002912	exon11	c.A1547G	p.E516G	.	.	236	6	244	0	.	94
C7	730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40981550	40981550	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	C7	NM_000587	exon18	c.A2407T	p.S803C	.	.	151	70	205	0	.	22
CACYBP	27101	bcgsc.ca	37	1	174976251	174976251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CACYBP	NM_014412	exon4	c.T350C	p.V117A	.	.	233	6	196	1	.	90
CCDC169-SOHLH2	100526761	bcgsc.ca	37	13	36767774	36767774	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001198910	exon9	c.A645G	p.T215T	.	.	66	4	149	1	.	.
CCDC81	60494	bcgsc.ca	37	11	86097091	86097091	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CCDC81	NM_021827	exon2	c.80-2A>G	.	.	.	108	5	108	0	.	91
CD99L2	83692	bcgsc.ca	37	X	149983367	149983367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CD99L2	NM_001242614	exon4	c.A257G	p.D86G	.	.	211	6	217	0	.	195
CDH16	1014	broad.mit.edu	37	16	66944367	66944367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CDH16	NM_004062	exon15	c.C1963T	p.H655Y	.	.	94	4	87	1	.	93
CDH22	64405	ucsc.edu	37	20	44803675	44803675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CDH22	NM_021248	exon12	c.A1957G	p.S653G	.	.	32	4	23	0	.	95
CEP120	153241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	122725672	122725672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CEP120	NM_153223	exon9	c.G1201A	p.E401K	.	.	282	100	339	0	.	91
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6692504	6692504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CHD4	NM_001273	exon26	c.A3920G	p.E1307G	.	.	159	55	180	0	.	228
CHI3L1	1116	bcgsc.ca	37	1	203149619	203149619	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CHI3L1	NM_001276	exon8	c.A873G	p.A291A	.	.	132	8	136	0	.	515
CNTNAP3	79937	broad.mit.edu;bcgsc.ca	37	9	39099959	39099959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CNTNAP3	NM_033655	exon18	c.G2944T	p.V982F	.	.	272	117	285	0	.	91
COL19A1	1310	bcgsc.ca	37	6	70856708	70856708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	COL19A1	NM_001858	exon27	c.A1820G	p.E607G	.	.	133	6	167	0	.	156
COL6A6	131873	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130286894	130286894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	COL6A6	NM_001102608	exon5	c.G1847T	p.C616F	.	.	78	34	105	2	.	76
COMMD4	54939	bcgsc.ca	37	15	75631625	75631625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	COMMD4	NM_017828	exon6	c.C322T	p.R108C	.	.	276	13	347	8	.	90
CREB3	10488	bcgsc.ca	37	9	35736586	35736586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CREB3	NM_006368	exon9	c.T979C	p.W327R	.	.	59	5	54	0	.	90
CRYGN	155051	bcgsc.ca	37	7	151135168	151135168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CRYGN	NM_144727	exon2	c.T184C	p.F62L	.	.	77	5	104	1	.	90
DACT1	51339	broad.mit.edu;mdanderson.org	37	14	59112758	59112758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DACT1	NM_016651	exon4	c.G1417T	p.E473X	.	.	28	8	29	0	.	291
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88885313	88885313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DCAF4L2	NM_152418	exon1	c.T887C	p.L296P	.	.	189	48	214	0	.	91
DDC	1644	bcgsc.ca	37	7	50537836	50537836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DDC	NM_001082971	exon12	c.T1075C	p.S359P	.	.	58	4	86	0	.	92
DDX17	10521	bcgsc.ca	37	22	38891844	38891844	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DDX17	NM_006386	exon6	c.T837C	p.Y279Y	.	.	66	4	66	0	.	229
DEFB126	81623	broad.mit.edu	37	20	126153	126153	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DEFB126	NM_030931	exon2	c.C156T	p.C52C	.	.	109	4	157	1	.	90
DIABLO	56616	bcgsc.ca	37	12	122701097	122701097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DIABLO	NM_019887	exon6	c.A461G	p.E154G	.	.	63	4	115	0	.	659
DNAH14	127602	bcgsc.ca	37	1	225519147	225519147	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DNAH14	NM_001373	exon63	c.A9453G	p.E3151E	.	.	170	5	159	0	.	23
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84931193	84931193	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DNAH6	NM_001370	exon51	c.C8232T	p.V2744V	.	.	62	29	73	0	.	69
DPYD	1806	bcgsc.ca	37	1	98293685	98293685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DPYD	NM_000110	exon3	c.T218C	p.L73P	.	.	62	4	84	0	.	278
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41719859	41719859	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DSCAM	NM_001271534	exon6	c.C948A	p.A316A	.	.	56	21	69	0	.	101
E2F6	1876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11593707	11593707	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	E2F6	NM_198256	exon4	c.380+1G>C	.	.	.	113	38	186	0	.	838
EDAR	10913	bcgsc.ca	37	2	109513386	109513386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EDAR	NM_022336	exon12	c.T1324C	p.S442P	.	.	113	18	115	2	.	92
EGFR	1956	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55273125	55273125	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EGFR	NM_005228	exon28	c.A3448T	p.T1150S	.	.	129	48	143	1	.	44910
EHHADH	1962	bcgsc.ca	37	3	184910329	184910329	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1857T	p.I619I	.	.	103	7	124	1	.	93
EHHADH	1962	bcgsc.ca	37	3	184910384	184910384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1802T	p.S601L	.	.	89	5	120	0	.	93
EHHADH	1962	broad.mit.edu	37	3	184910445	184910445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1741A	p.Q581K	.	.	112	6	140	0	.	93
EHHADH	1962	hgsc.bcm.edu	37	3	184910309	184910309	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1877A	p.S626X	.	.	109	6	143	0	.	93
EHHADH	1962	hgsc.bcm.edu;bcgsc.ca	37	3	184910328	184910328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1858A	p.L620I	.	.	106	7	123	0	.	93
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184910910	184910910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1276T	p.H426Y	.	.	169	15	194	0	.	93
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184910913	184910913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1273T	p.P425S	.	.	164	13	193	0	.	93
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184910061	184910061	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C2125T	p.L709L	.	.	150	12	146	0	.	93
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184910094	184910094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C2092G	p.L698V	.	.	140	12	156	0	.	93
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184910834	184910834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1352T	p.S451F	.	.	173	11	184	0	.	93
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184911086	184911086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1100T	p.S367L	.	.	203	14	176	0	.	93
EIF2D	1939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206772954	206772954	+	Silent	SNP	G	G	A	rs114245341	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EIF2D	NM_006893	exon10	c.C1065T	p.F355F	.	.	144	36	71	0	G|0.999;A|0.001	92
EIF2S1	1965	bcgsc.ca	37	14	67848325	67848325	+	Missense_Mutation	SNP	G	G	T	rs116791877	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EIF2S1	NM_004094	exon6	c.G596T	p.C199F	.	.	61	21	78	3	G|0.972;T|0.028	91
ELOVL1	64834	bcgsc.ca	37	1	43830007	43830007	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ELOVL1	NM_022821	exon7	c.A606G	p.T202T	.	.	71	4	66	0	.	90
EPB41L4B	54566	bcgsc.ca	37	9	112017792	112017792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EPB41L4B	NM_019114	exon11	c.A1168G	p.S390G	.	.	83	4	164	1	.	92
ERF	2077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42753847	42753847	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ERF	NM_006494	exon4	c.T417G	p.G139G	.	.	46	22	74	0	.	658
FAM184A	79632	bcgsc.ca	37	6	119345970	119345970	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FAM184A	NM_024581	exon2	c.T168C	p.Y56Y	.	.	51	4	50	0	.	519
FAM205A	259308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34725816	34725816	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001141917	exon4	c.T1421A	p.L474H	.	.	296	54	207	0	.	.
FAM205B	389715	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34834878	34834878	+	RNA	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	.	.	.	.	.	.	142	32	109	0	.	.
FAM214B	80256	bcgsc.ca	37	9	35107708	35107708	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_025182	exon3	c.T564C	p.T188T	.	.	70	4	85	0	.	.
FAM58A	92002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152857988	152857988	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FAM58A	.	.	.	.	.	.	167	79	161	0	.	130
FCHO2	115548	bcgsc.ca	37	5	72286336	72286336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FCHO2	NM_138782	exon4	c.A232G	p.T78A	.	.	120	6	112	0	.	23
FLOT1	10211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30709635	30709635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FLOT1	NM_005803	exon3	c.G53A	p.R18Q	.	.	80	37	91	0	.	90
FOLH1	2346	bcgsc.ca	37	11	49204732	49204732	+	Missense_Mutation	SNP	T	T	C	rs199782232		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FOLH1	NM_004476	exon7	c.A889G	p.I297V	.	.	220	8	297	1	.	579
FOLH1	2346	bcgsc.ca	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	rs116795343	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FOLH1	NM_004476	exon7	c.G842A	p.R281H	.	.	174	17	195	3	C|0.974;T|0.026	579
FOLH1	2346	ucsc.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	.	.	145	19	157	3	A|0.994;G|0.006	579
FOXJ3	22887	bcgsc.ca	37	1	42660591	42660591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FOXJ3	NM_001198851	exon10	c.T904C	p.S302P	.	.	72	4	87	0	.	228
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	48578067	48578067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FRYL	NM_015030	exon24	c.G2701A	p.G901S	.	.	71	5	89	0	.	69
GABRR2	2570	bcgsc.ca	37	6	89975352	89975352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	GABRR2	NM_002043	exon7	c.T869C	p.V290A	.	.	49	4	102	0	.	68
GANC	2595	bcgsc.ca	37	15	42621560	42621560	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	GANC	NM_198141	exon14	c.A1557G	p.R519R	.	.	89	4	101	0	.	92
GARNL3	84253	bcgsc.ca	37	9	130080366	130080366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	GARNL3	NM_032293	exon5	c.T463C	p.Y155H	.	.	55	4	128	0	.	516
GCNT7	140687	broad.mit.edu	37	20	55072135	55072135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	.	.	.	.	.	.	199	5	231	1	.	.
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	55198738	55198738	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	GFRAL	NM_207410	exon3	c.A312G	p.K104K	.	.	20	11	32	0	.	154
GLE1	2733	bcgsc.ca	37	9	131296089	131296089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	GLE1	NM_001499	exon11	c.T1505C	p.I502T	.	.	91	4	163	0	.	22
GLTSCR1L	23506	bcgsc.ca	37	6	42828057	42828057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_015349	exon10	c.T2312C	p.L771P	.	.	71	5	77	0	.	.
GUCY2C	2984	bcgsc.ca	37	12	14827570	14827570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	GUCY2C	NM_004963	exon8	c.T1073C	p.L358P	.	.	85	5	78	0	.	338
HEATR5B	54497	broad.mit.edu;bcgsc.ca	37	2	37283748	37283748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	HEATR5B	NM_019024	exon16	c.A2234G	p.N745S	.	.	147	6	149	0	.	142
HMX1	3166	broad.mit.edu	37	4	8869814	8869814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_018942	exon2	c.C652A	p.L218M	.	.	21	3	33	0	.	.
HPS5	11234	bcgsc.ca	37	11	18327000	18327000	+	Missense_Mutation	SNP	A	A	G	rs148986553	alternate_allele	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	HPS5	NM_181507	exon8	c.T865C	p.S289P	.	.	76	4	73	0	A|0.999;T|0.001	133
HTR3A	3359	broad.mit.edu	37	11	113857412	113857412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	HTR3A	NM_000869	exon7	c.A896G	p.D299G	.	.	155	6	153	1	.	90
IDUA	3425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	994398	994398	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	IDUA	NM_000203	exon3	c.300-2A>T	.	.	.	212	87	223	0	.	91
IL22RA1	58985	bcgsc.ca	37	1	24447558	24447558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	IL22RA1	NM_021258	exon7	c.A1462G	p.T488A	.	.	123	5	176	1	.	91
IRF2BP2	359948	bcgsc.ca	37	1	234745078	234745078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	IRF2BP2	NM_182972	exon1	c.A163G	p.T55A	.	.	53	4	52	0	.	90
KIAA1107	23285	bcgsc.ca	37	1	92647200	92647200	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_015237	exon8	c.A2646G	p.E882E	.	.	65	5	74	0	.	.
KIAA1524	57650	bcgsc.ca	37	3	108278858	108278858	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KIAA1524	NM_020890	exon15	c.T1845C	p.C615C	.	.	57	4	52	0	.	92
KIF13A	63971	broad.mit.edu;bcgsc.ca	37	6	17790134	17790134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KIF13A	NM_001105566	exon26	c.A3230G	p.D1077G	.	.	194	7	267	1	.	137
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241712532	241712532	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KIF1A	NM_001244008	exon13	c.C1179G	p.D393E	.	.	87	34	114	0	.	91
KIF20B	9585	bcgsc.ca	37	10	91497600	91497600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KIF20B	NM_016195	exon20	c.T2882C	p.I961T	.	.	82	4	89	0	.	93
KLHL41	10324	bcgsc.ca	37	2	170366619	170366619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_006063	exon1	c.A331G	p.S111G	.	.	94	5	121	0	.	.
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38933922	38933922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KRT27	NM_181537	exon6	c.G1035T	p.Q345H	.	.	133	69	145	0	.	90
KRTAP10-2	386679	bcgsc.ca	37	21	45971162	45971162	+	Silent	SNP	C	C	T	rs76415521		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KRTAP10-2	NM_198693	exon1	c.G180A	p.A60A	.	.	100	27	111	10	.	135
LEPREL1	55214	bcgsc.ca	37	3	189711944	189711944	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LEPREL1	NM_018192	exon3	c.T762C	p.P254P	.	.	77	4	73	0	.	155
LOC440905	0	broad.mit.edu	37	2	130798072	130798072	+	RNA	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	.	.	.	.	.	.	16	4	11	0	.	.
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100017553	100017553	+	Missense_Mutation	SNP	G	G	T	rs11189525	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LOXL4	NM_032211	exon8	c.C1114A	p.P372T	.	.	133	59	144	0	G|0.998;T|0.002	230
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42357103	42357103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LRFN5	NM_152447	exon3	c.A1275T	p.E425D	.	.	141	59	166	0	.	97
LRP2	4036	bcgsc.ca	37	2	170026256	170026256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LRP2	NM_004525	exon60	c.A11453G	p.D3818G	.	.	171	5	209	0	.	175
LRP8	7804	bcgsc.ca	37	1	53741319	53741319	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LRP8	NM_004631	exon6	c.A990G	p.E330E	.	.	136	5	131	0	.	90
LRRC3	81543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	45876637	45876638	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LRRC3	NM_030891	exon2	c.110_111insC	p.C37fs	.	.	33	10	46	0	.	90
MACF1	23499	bcgsc.ca	37	1	39782201	39782201	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MACF1	NM_012090	exon29	c.G3603A	p.R1201R	.	.	130	5	141	0	.	165
MAN1A2	10905	bcgsc.ca	37	1	118065479	118065479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MAN1A2	NM_006699	exon13	c.T1826C	p.L609P	.	.	74	4	102	0	.	90
MAP4K4	9448	broad.mit.edu	37	2	102476328	102476328	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MAP4K4	NM_145686	exon15	c.1611+2T>C	.	.	.	100	4	112	3	.	547
MAP7D2	256714	bcgsc.ca	37	X	20062593	20062593	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MAP7D2	NM_001168465	exon7	c.T768C	p.S256S	.	.	153	5	181	0	.	195
MEP1A	4224	bcgsc.ca	37	6	46761455	46761455	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MEP1A	NM_005588	exon3	c.145+2T>C	.	.	.	84	4	72	0	.	183
MESDC2	23184	broad.mit.edu;mdanderson.org	37	15	81282119	81282119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MESDC2	NM_015154	exon1	c.G14A	p.R5K	.	.	9	3	23	0	.	90
MGME1	92667	bcgsc.ca	37	20	17950902	17950902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_052865	exon2	c.A400G	p.T134A	.	.	77	5	123	1	.	.
MIR194-2	406970	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	64658908	64658908	+	RNA	SNP	A	A	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	.	.	.	.	.	.	102	30	112	1	.	.
MLL2	8085	bcgsc.ca	37	12	49421608	49421608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MLL2	NM_003482	exon47	c.A14621G	p.D4874G	.	.	122	6	184	0	.	612
MRPS33	51650	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140710231	140710231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MRPS33	NM_016071	exon2	c.T203C	p.L68P	.	.	139	58	179	1	.	90
MUC5B	727897	bcgsc.ca	37	11	1261305	1261305	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_002458	exon29	c.T3759C	p.A1253A	.	.	76	4	85	0	.	.
MYO10	4651	bcgsc.ca	37	5	16769238	16769238	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	MYO10	NM_012334	exon10	c.T1005C	p.H335H	.	.	77	4	86	0	.	3
NAA16	79612	bcgsc.ca	37	13	41947805	41947805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	NAA16	NM_024561	exon18	c.A2188G	p.S730G	.	.	31	4	78	0	.	90
NBPF10	100132406	broad.mit.edu	37	1	145296373	145296373	+	Missense_Mutation	SNP	G	G	T	rs3969711	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001039703	exon3	c.G295T	p.V99F	.	.	181	7	176	1	G|0.700;T|0.300	.
NCAM2	4685	bcgsc.ca	37	21	22710816	22710816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	NCAM2	NM_004540	exon8	c.A1006G	p.R336G	.	.	123	6	158	0	.	94
NEB	4703	bcgsc.ca	37	2	152581372	152581372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	NEB	NM_004543	exon7	c.A506G	p.K169R	.	.	220	6	230	0	.	145
NT5C1A	84618	bcgsc.ca	37	1	40131784	40131784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	NT5C1A	NM_032526	exon2	c.A260G	p.E87G	.	.	82	4	69	0	.	91
NT5C3A	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	33054407	33054407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001002010	exon9	c.G946T	p.D316Y	.	.	46	8	46	0	.	.
NUP153	9972	bcgsc.ca	37	6	17632990	17632990	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	NUP153	NM_005124	exon17	c.A2550G	p.K850K	.	.	78	5	91	0	.	637
NUP43	348995	bcgsc.ca	37	6	150057638	150057638	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	NUP43	NM_198887	exon6	c.T759C	p.P253P	.	.	78	4	155	0	.	205
OBSCN	84033	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228404297	228404297	+	Silent	SNP	G	G	A	rs116554705	bycluster;byfrequency;by1000genomes	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	OBSCN	NM_001271223	exon7	c.G2271A	p.S757S	.	.	381	266	228	1	G|0.987;A|0.013	403
OR2V1	26693	broad.mit.edu;bcgsc.ca	37	5	180552298	180552298	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001258283	exon1	c.7delA	p.R3fs	.	.	54	23	69	0	.	.
PARD3	56288	ucsc.edu;bcgsc.ca	37	10	34636998	34636998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PARD3	NM_001184792	exon15	c.A2113G	p.T705A	.	.	43	4	43	0	.	92
PARD6B	84612	bcgsc.ca	37	20	49367001	49367001	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PARD6B	NM_032521	exon3	c.A1095G	p.E365E	.	.	64	4	75	0	.	91
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222268	140222268	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PCDHA8	NM_031856	exon1	c.G1362A	p.A454A	.	.	353	142	428	0	.	92
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82580517	82580517	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PCLO	NM_014510	exon6	c.A9387C	p.S3129S	.	.	153	57	184	0	.	29
PEX1	5189	bcgsc.ca	37	7	92146899	92146899	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PEX1	NM_000466	exon5	c.T930C	p.C310C	.	.	85	4	118	0	.	91
PFKFB4	5210	bcgsc.ca	37	3	48563026	48563026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PFKFB4	NM_004567	exon10	c.A1064G	p.K355R	.	.	63	4	63	0	.	153
PGM2	55276	bcgsc.ca	37	4	37863193	37863193	+	Missense_Mutation	SNP	T	T	C	rs76138483	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PGM2	NM_018290	exon14	c.T1799C	p.F600S	.	.	129	16	140	3	T|0.998;C|0.002	91
PLCG2	5336	bcgsc.ca	37	16	81965188	81965188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PLCG2	NM_002661	exon25	c.A2668G	p.T890A	.	.	117	6	114	0	.	892
PLSCR4	57088	bcgsc.ca	37	3	145912203	145912203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PLSCR4	NM_020353	exon9	c.A985G	p.R329G	.	.	102	4	92	0	.	90
POLR3A	11128	bcgsc.ca	37	10	79767569	79767569	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	POLR3A	NM_007055	exon15	c.A1965G	p.L655L	.	.	79	4	89	0	.	90
POM121L10P	646074	bcgsc.ca	37	22	25053053	25053053	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	.	.	.	.	.	.	44	4	42	0	.	.
POSTN	10631	bcgsc.ca	37	13	38153415	38153415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	POSTN	NM_006475	exon13	c.T1742C	p.V581A	.	.	63	4	139	0	.	516
PPP2R2B	5521	bcgsc.ca	37	5	146080615	146080615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PPP2R2B	NM_181675	exon3	c.A479G	p.E160G	.	.	96	5	92	0	.	659
PRDM14	63978	bcgsc.ca	37	8	70970972	70970972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PRDM14	NM_024504	exon6	c.G1289A	p.R430K	.	.	95	4	110	0	.	93
PRICKLE1	144165	broad.mit.edu	37	12	42858904	42858904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PRICKLE1	NM_001144882	exon7	c.A932G	p.D311G	.	.	91	5	106	0	.	518
PRR5	55615	ucsc.edu	37	22	45121149	45121149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PRR5	NM_001198721	exon5	c.T310C	p.S104P	.	.	42	4	53	0	.	23
PRSS8	5652	broad.mit.edu	37	16	31143618	31143618	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_002773	exon6	c.T744C	p.G248G	.	.	164	5	169	4	.	.
PSG8	440533	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43268385	43268385	+	Missense_Mutation	SNP	A	A	G	rs75687580	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PSG8	NM_001130167	exon2	c.T113C	p.I38T	.	.	289	81	290	1	A|0.993;G|0.007	90
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75798215	75798215	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PTPN9	NM_002833	exon7	c.C769G	p.H257D	.	.	207	83	203	0	.	226
PTPRQ	374462	bcgsc.ca	37	12	80904130	80904130	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001145026	exon14	c.T2070C	p.S690S	.	.	108	5	110	0	.	.
PTPRQ	374462	bcgsc.ca	37	12	80933694	80933694	+	Missense_Mutation	SNP	A	A	G	rs190166486	by1000genomes	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001145026	exon17	c.A2609G	p.D870G	.	.	121	5	119	1	A|0.999;G|0.000	.
QKI	9444	bcgsc.ca	37	6	163956096	163956096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	QKI	NM_206853	exon4	c.A485G	p.N162S	.	.	198	6	304	0	.	290
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204304792	204304792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RAPH1	NM_213589	exon14	c.C3121T	p.L1041F	.	.	64	22	114	0	.	1151
RBM19	9904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	114386746	114386746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RBM19	NM_001146699	exon10	c.G1168A	p.G390R	.	.	260	93	321	0	.	95
RBMS2	5939	broad.mit.edu	37	12	56956273	56956273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RBMS2	NM_002898	exon2	c.A139G	p.S47G	.	.	459	7	462	2	.	90
REG1P	5969	broad.mit.edu	37	2	79363896	79363896	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	.	.	.	.	.	.	17	3	13	0	.	.
RFX4	5992	bcgsc.ca	37	12	107114569	107114569	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RFX4	NM_001206691	exon13	c.A1293G	p.K431K	.	.	159	6	187	0	.	91
RGL4	266747	bcgsc.ca	37	22	24034385	24034385	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RGL4	NM_153615	exon1	c.T168C	p.T56T	.	.	71	4	94	0	.	228
RMI1	80010	bcgsc.ca	37	9	86616058	86616058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RMI1	NM_024945	exon3	c.T157C	p.F53L	.	.	64	4	148	0	.	90
RNF123	63891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49739578	49739578	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RNF123	NM_022064	exon18	c.1557+1G>A	.	.	.	168	63	176	0	.	584
RNF17	56163	ucsc.edu;bcgsc.ca	37	13	25439064	25439064	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RNF17	NM_031277	exon29	c.A4029G	p.G1343G	.	.	45	4	50	0	.	228
RORB	6096	bcgsc.ca	37	9	77282811	77282811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RORB	NM_006914	exon8	c.T1105C	p.S369P	.	.	67	4	161	0	.	229
RPA1	6117	bcgsc.ca	37	17	1778967	1778967	+	Missense_Mutation	SNP	C	C	T	rs12449332	bycluster;byfrequency;byhapmap	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RPA1	NM_002945	exon7	c.C467T	p.S156F	.	.	62	4	100	0	C|0.990;T|0.010	651
RPL36AL	6166	bcgsc.ca	37	14	50085753	50085753	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RPL36AL	NM_001001	exon2	c.G70G	p.D24D	.	.	101	5	106	0	.	68
RTF1	23168	bcgsc.ca	37	15	41749929	41749929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RTF1	NM_015138	exon4	c.T517C	p.S173P	.	.	163	5	175	0	.	92
RUFY3	22902	bcgsc.ca	37	4	71672274	71672274	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RUFY3	NM_001037442	exon18	c.T1761C	p.C587C	.	.	164	6	170	0	.	90
SACS	26278	bcgsc.ca	37	13	23927968	23927968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SACS	NM_014363	exon9	c.A2141G	p.K714R	.	.	181	6	267	0	.	298
SAMD1	90378	bcgsc.ca	37	19	14199313	14199313	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_138352	exon5	c.A1215G	p.P405P	.	.	109	6	125	0	.	.
SAMHD1	25939	bcgsc.ca	37	20	35532605	35532605	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SAMHD1	NM_015474	exon13	c.A1458G	p.K486K	.	.	187	6	235	0	.	90
SEH1L	81929	bcgsc.ca	37	18	12963300	12963300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SEH1L	NM_001013437	exon4	c.A451G	p.S151G	.	.	89	4	99	1	.	90
SEL1L3	23231	bcgsc.ca	37	4	25821527	25821527	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_015187	exon8	c.A1326G	p.E442E	.	.	85	5	88	0	.	.
SELE	6401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169696929	169696929	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SELE	NM_000450	exon9	c.T1419C	p.L473L	.	.	312	96	261	0	.	95
SERINC3	10955	bcgsc.ca	37	20	43139974	43139974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SERINC3	NM_006811	exon4	c.T431G	p.I144S	.	.	96	4	122	0	.	229
SETD8	387893	bcgsc.ca	37	12	123875311	123875311	+	Silent	SNP	C	C	T	rs74356260		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SETD8	NM_020382	exon3	c.C267T	p.A89A	.	.	120	7	155	0	.	90
SETX	23064	bcgsc.ca	37	9	135203755	135203755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SETX	NM_015046	exon10	c.A3230G	p.D1077G	.	.	71	4	123	0	.	93
SF3A3	10946	bcgsc.ca	37	1	38435268	38435268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SF3A3	NM_006802	exon13	c.A1145C	p.N382T	.	.	266	37	306	5	.	90
SH2D4A	63898	ucsc.edu;bcgsc.ca	37	8	19218714	19218714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SH2D4A	NM_022071	exon6	c.A595G	p.K199E	.	.	28	4	50	0	.	90
SKP2	6502	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36152875	36152875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SKP2	NM_032637	exon2	c.A11G	p.K4R	.	.	43	4	67	0	.	1084
SLC25A24	29957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108735196	108735196	+	Missense_Mutation	SNP	C	C	A	rs150343087	byfrequency;alternate_allele	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC25A24	NM_213651	exon1	c.G48T	p.K16N	.	.	108	54	107	0	C|0.996;T|0.004	91
SLC28A3	64078	bcgsc.ca	37	9	86894249	86894249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC28A3	NM_001199633	exon17	c.A1880G	p.N627S	.	.	71	4	133	0	.	94
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62373481	62373481	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC2A4RG	NM_020062	exon5	c.580-2A>G	.	.	.	88	26	124	0	.	90
SLC35G6	643664	broad.mit.edu	37	17	7386099	7386099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001102614	exon2	c.T796C	p.S266P	.	.	155	4	311	0	.	.
SLC39A11	201266	bcgsc.ca	37	17	70645020	70645020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC39A11	NM_001159770	exon9	c.T872C	p.L291P	.	.	59	4	71	0	.	91
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110740935	110740935	+	Missense_Mutation	SNP	C	C	T	rs141622274	byfrequency	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC6A17	NM_001010898	exon12	c.C2053T	p.P685S	.	.	120	50	127	0	C|1.000;T|0.000	92
SLC9C1	285335	bcgsc.ca	37	3	111981923	111981923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_183061	exon10	c.A1045G	p.S349G	.	.	194	6	194	0	.	.
SOLH	6650	bcgsc.ca	37	16	599155	599155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SOLH	NM_005632	exon5	c.A1612G	p.T538A	.	.	60	4	46	0	.	523
SRGAP2	23380	broad.mit.edu	37	1	206626710	206626710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	.	.	.	.	.	.	227	5	173	0	.	.
SRRM1	10250	bcgsc.ca	37	1	24975424	24975424	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SRRM1	NM_005839	exon4	c.A309G	p.G103G	.	.	62	6	84	0	.	93
SRRM2	23524	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2814972	2814972	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SRRM2	NM_016333	exon11	c.T4443C	p.D1481D	.	.	25	8	43	1	.	93
SSMEM1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129847775	129847775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_145268	exon1	c.T25G	p.W9G	.	.	164	62	198	0	.	.
STAG1	10274	bcgsc.ca	37	3	136076643	136076643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	STAG1	NM_005862	exon28	c.A2984G	p.E995G	.	.	132	5	146	1	.	228
STAU2	27067	broad.mit.edu;bcgsc.ca	37	8	74600947	74600947	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	STAU2	NM_001164380	exon5	c.A216G	p.E72E	.	.	153	51	216	1	.	90
SVEP1	79987	ucsc.edu	37	9	113168720	113168720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SVEP1	NM_153366	exon38	c.T9160C	p.S3054P	.	.	35	4	93	0	.	75
SYCP2	10388	bcgsc.ca	37	20	58489045	58489045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SYCP2	NM_014258	exon11	c.T815C	p.L272P	.	.	128	5	115	0	.	525
SYNE2	23224	bcgsc.ca	37	14	64669559	64669559	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SYNE2	NM_182914	exon100	c.T18079C	p.L6027L	.	.	58	4	115	0	.	164
SYNE2	23224	bcgsc.ca	37	14	64682071	64682071	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SYNE2	NM_182914	exon107	c.T19401C	p.S6467S	.	.	53	4	46	0	.	164
SYT7	9066	broad.mit.edu	37	11	61290639	61290639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SYT7	NM_001252065	exon9	c.T1240C	p.F414L	.	.	379	9	415	1	.	94
SYTL2	54843	bcgsc.ca	37	11	85435792	85435792	+	Missense_Mutation	SNP	G	G	C	rs200764742	alternate_allele	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SYTL2	NM_206927	exon1	c.C1708G	p.R570G	.	.	110	19	149	5	.	137
TAF2	6873	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120807828	120807828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TAF2	NM_003184	exon9	c.G1135A	p.G379R	.	.	111	48	162	1	.	274
TARBP1	6894	bcgsc.ca	37	1	234565320	234565320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TARBP1	NM_005646	exon16	c.A2713G	p.T905A	.	.	205	8	191	0	.	93
TAS1R3	83756	broad.mit.edu	37	1	1267237	1267237	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TAS1R3	NM_152228	exon2	c.T411C	p.R137R	.	.	181	6	206	1	.	22
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152083976	152083976	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TCHH	NM_007113	exon3	c.G1717T	p.E573X	.	.	347	72	242	0	.	72
TCTEX1D1	200132	bcgsc.ca	37	1	67243038	67243038	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TCTEX1D1	NM_152665	exon5	c.A441G	p.R147R	.	.	132	5	172	0	.	90
TFAP2D	83741	ucsc.edu;bcgsc.ca	37	6	50681772	50681772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TFAP2D	NM_172238	exon1	c.T4C	p.S2P	.	.	47	4	38	0	.	159
TGFA	7039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70742002	70742002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TGFA	NM_001099691	exon2	c.C83G	p.S28C	.	.	84	24	96	0	.	683
TIAM2	26230	bcgsc.ca	37	6	155450982	155450982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TIAM2	NM_012454	exon3	c.T625C	p.S209P	.	.	48	7	73	0	.	93
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	170736448	170736448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TLX3	NM_021025	exon1	c.C79A	p.P27T	.	.	28	10	23	0	.	658
TMEM135	65084	bcgsc.ca	37	11	87013418	87013418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TMEM135	NM_022918	exon8	c.A632G	p.E211G	.	.	121	6	135	2	.	514
TMEM209	84928	bcgsc.ca	37	7	129843887	129843887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TMEM209	NM_032842	exon2	c.A67G	p.T23A	.	.	96	4	107	0	.	92
TMEM66	51669	bcgsc.ca	37	8	29924321	29924321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TMEM66	NM_016127	exon4	c.A814G	p.I272V	.	.	118	5	196	0	.	90
TNNT2	7139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201328352	201328352	+	Missense_Mutation	SNP	C	C	T	rs147940106		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TNNT2	NM_001276345	exon17	c.G883A	p.G295R	.	.	188	50	142	0	C|1.000;T|0.000	90
TPTE2	93492	bcgsc.ca	37	13	20000590	20000590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TPTE2	NM_199254	exon19	c.A1370G	p.D457G	.	.	78	4	148	0	.	92
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49703678	49703678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TRPM4	NM_017636	exon18	c.G2767A	p.V923M	.	.	68	34	75	0	.	91
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	135782757	135782757	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TSC1	NM_000368	exon13	c.G1264T	p.E422X	.	.	93	60	169	0	.	1906
UBE2B	7320	bcgsc.ca	37	5	133710085	133710085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UBE2B	NM_003337	exon2	c.A56G	p.D19G	.	.	98	5	95	0	.	659
UBP1	7342	bcgsc.ca	37	3	33434084	33434084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UBP1	NM_014517	exon15	c.A1556G	p.E519G	.	.	91	4	87	0	.	537
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42585071	42585071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UBR2	NM_015255	exon11	c.A1276G	p.T426A	.	.	147	62	157	0	.	94
UNC5A	90249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176305056	176305056	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UNC5A	NM_133369	exon11	c.G1797A	p.A599A	.	.	87	47	94	0	.	91
USP48	84196	bcgsc.ca	37	1	22079560	22079560	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	USP48	NM_001032730	exon4	c.G465A	p.L155L	.	.	68	4	61	0	.	659
UTS2R	2837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80332626	80332626	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UTS2R	NM_018949	exon1	c.C426A	p.T142T	.	.	56	24	71	0	.	153
VPS37A	137492	bcgsc.ca	37	8	17104838	17104838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	VPS37A	NM_001145152	exon1	c.A85G	p.K29E	.	.	43	4	108	0	.	90
VPS53	55275	bcgsc.ca	37	17	559117	559117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	VPS53	NM_001128159	exon6	c.A449G	p.N150S	.	.	84	4	190	0	.	90
WNT10B	7480	bcgsc.ca	37	12	49361995	49361995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	WNT10B	NM_003394	exon4	c.A445G	p.K149E	.	.	52	13	81	8	.	565
ZBTB7B	51043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154987976	154987976	+	Silent	SNP	G	G	A	rs199671742		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZBTB7B	NM_001252406	exon4	c.G942A	p.E314E	.	.	171	43	140	0	G|0.999;A|0.001	90
ZFYVE19	84936	bcgsc.ca	37	15	41101414	41101414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZFYVE19	NM_001077268	exon2	c.A377G	p.K126R	.	.	123	5	129	0	.	91
ZMYM6	9204	bcgsc.ca	37	1	35453715	35453715	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZMYM6	NM_007167	exon16	c.T2968G	p.Y990D	.	.	99	24	150	6	.	93
ZNF189	7743	bcgsc.ca	37	9	104171243	104171243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZNF189	NM_003452	exon3	c.A1193G	p.K398R	.	.	59	5	96	0	.	229
ZNF20	7568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12243520	12243520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZNF20	NM_021143	exon4	c.G1481A	p.R494Q	.	.	70	25	102	0	.	22
ZNF512	84450	bcgsc.ca	37	2	27830777	27830777	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZNF512	NM_032434	exon10	c.T1002C	p.S334S	.	.	111	7	117	1	.	91
D86994.2	0	broad.mit.edu	37	22	23006960	23006961	+	RNA	DNP	CC	CC	AT	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	CC	CC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	.	.	.	.	.	.	.	.	.	.	.	
