Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	67210857	67210857	+	Nonsense_Mutation	SNP	G	G	A	rs200246933	alternate_allele	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ABCA10	NM_080282	exon10	c.C994T	p.R332X	.	.	95	24	127	0	G|0.999;C|0.000	93
ACOX1	51	bcgsc.ca	37	17	73956388	73956388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ACOX1	NM_004035	exon3	c.A338G	p.H113R	.	.	66	4	67	0	.	91
ADAM17	6868	broad.mit.edu	37	2	9661396	9661396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ADAM17	NM_003183	exon8	c.A893G	p.Y298C	.	.	274	5	398	0	.	659
ADAM9	8754	bcgsc.ca	37	8	38879168	38879168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ADAM9	NM_003816	exon8	c.A679G	p.M227V	.	.	68	4	130	0	.	227
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128958013	128958013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ADAMTS19	NM_133638	exon10	c.C1724G	p.P575R	.	.	241	55	247	0	.	295
ADCY10	55811	bcgsc.ca	37	1	167817727	167817727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ADCY10	NM_018417	exon19	c.A2309G	p.K770R	.	.	70	4	67	0	.	493
AGGF1	55109	bcgsc.ca	37	5	76332437	76332437	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	AGGF1	NM_018046	exon4	c.T573C	p.A191A	.	.	219	6	221	0	.	117
AGPAT6	137964	bcgsc.ca	37	8	41468253	41468253	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	AGPAT6	NM_178819	exon5	c.537-2A>G	.	.	.	141	5	255	0	.	90
AIF1	199	ucsc.edu;bcgsc.ca	37	6	31583458	31583458	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	AIF1	NM_001623	exon3	c.C99T	p.D33D	.	.	41	4	43	0	.	515
ALDH4A1	8659	broad.mit.edu	37	1	19199414	19199414	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ALDH4A1	NM_003748	exon15	c.G1617A	p.L539L	.	.	62	3	59	0	.	226
ANK2	287	bcgsc.ca	37	4	114279307	114279307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ANK2	NM_001148	exon38	c.A9533G	p.E3178G	.	.	84	4	108	0	.	583
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220095010	220095010	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ANKZF1	NM_001042410	exon2	c.C31G	p.P11A	.	.	140	38	218	0	.	92
ANXA2P2	304	ucsc.edu;bcgsc.ca	37	9	33624718	33624718	+	RNA	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	.	.	.	177	64	204	0	.	.
APP	351	bcgsc.ca	37	21	27269940	27269940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	APP	NM_000484	exon16	c.A2009G	p.K670R	.	.	53	4	147	0	.	91
ARFGEF1	10565	bcgsc.ca	37	8	68170434	68170434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ARFGEF1	NM_006421	exon16	c.A2327G	p.D776G	.	.	104	5	64	0	.	294
ARHGAP26	23092	bcgsc.ca	37	5	142416813	142416813	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ARHGAP26	NM_015071	exon13	c.T1197C	p.A399A	.	.	122	5	127	0	.	660
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145773562	145773562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ARHGAP39	NM_025251	exon6	c.C908T	p.S303F	.	.	62	11	66	0	.	90
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27105581	27105582	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ARID1A	NM_006015	exon20	c.5192_5193insA	p.L1731fs	.	.	97	53	222	0	.	584
ASTE1	28990	bcgsc.ca	37	3	130743911	130743911	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ASTE1	NM_014065	exon3	c.A240G	p.G80G	.	.	79	4	106	0	.	90
ATP13A1	57130	broad.mit.edu	37	19	19770790	19770790	+	Missense_Mutation	SNP	C	C	T	rs200481862		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ATP13A1	NM_020410	exon2	c.G403A	p.D135N	.	.	69	4	69	0	C|0.999;T|0.001	138
ATRNL1	26033	bcgsc.ca	37	10	117075037	117075037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ATRNL1	NM_207303	exon18	c.G2828A	p.C943Y	.	.	75	4	94	0	.	96
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42273177	42273177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ATXN7L3	NM_020218	exon7	c.T564A	p.D188E	.	.	39	13	68	0	.	68
B3GALTL	145173	ucsc.edu;bcgsc.ca	37	13	31789232	31789232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	B3GALTL	NM_194318	exon2	c.T115C	p.S39P	.	.	46	4	76	0	.	92
BAI3	577	broad.mit.edu	37	6	69349307	69349307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BAI3	NM_001704	exon3	c.A740G	p.K247R	.	.	32	4	40	1	.	1148
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69703824	69703824	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	BAI3,brain,glioma,+1	BAI3	NM_001704	exon11	c.A1899G	p.A633A	.	.	94	28	92	0	.	1148
BBS9	27241	broad.mit.edu	37	7	33573683	33573683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BBS9	NM_198428	exon21	c.A2416G	p.S806G	.	.	185	6	172	0	.	230
BCCIP	56647	broad.mit.edu;bcgsc.ca	37	10	127541724	127541724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BCCIP	NM_016567	exon8	c.T881C	p.V294A	.	.	72	7	74	0	.	154
BFSP2	8419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	133185754	133185754	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BFSP2	NM_003571	exon5	c.C974A	p.S325X	.	.	196	20	241	0	.	90
BIRC6	57448	bcgsc.ca	37	2	32692610	32692610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BIRC6	NM_016252	exon27	c.A5374G	p.T1792A	.	.	165	6	252	0	.	233
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61870579	61870579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BIRC7	NM_139317	exon5	c.G643A	p.E215K	.	.	48	22	47	0	.	659
BLNK	29760	bcgsc.ca	37	10	97960741	97960741	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BLNK	NM_001258440	exon14	c.A1008G	p.E336E	.	.	90	4	129	0	.	92
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41203109	41203109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BRCA1	NM_007300	exon21	c.G5366A	p.C1789Y	.	.	59	20	101	0	.	3415
BUB1B	701	bcgsc.ca	37	15	40504824	40504824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	BUB1B	NM_001211	exon19	c.A2510G	p.Q837R	.	.	77	4	102	0	.	1509
C11orf70	85016	bcgsc.ca	37	11	101953828	101953828	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	C11orf70	NM_032930	exon7	c.A702G	p.S234S	.	.	47	4	53	0	.	91
C16orf96	342346	ucsc.edu;bcgsc.ca	37	16	4625287	4625287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001145011	exon5	c.A806G	p.E269G	.	.	55	5	52	0	.	.
C1orf226	400793	broad.mit.edu	37	1	162353143	162353143	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	C1orf226	NM_001135240	exon3	c.T618C	p.A206A	.	.	155	5	122	0	.	1
C1orf43	25912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154184832	154184832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	C1orf43	NM_001098616	exon6	c.T530C	p.L177P	.	.	110	69	106	0	.	90
C2orf71	388939	bcgsc.ca	37	2	29295044	29295044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	C2orf71	NM_001029883	exon1	c.A2084G	p.E695G	.	.	128	5	188	0	.	91
CCDC136	64753	bcgsc.ca	37	7	128432428	128432428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CCDC136	NM_001201372	exon2	c.A113G	p.K38R	.	.	65	4	82	0	.	24
CCDC7	221016	bcgsc.ca	37	10	32780888	32780888	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CCDC7	NM_145023	exon10	c.T835C	p.L279L	.	.	73	4	91	0	.	90
CCDC88A	55704	bcgsc.ca	37	2	55602009	55602009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CCDC88A	NM_018084	exon4	c.A284G	p.Q95R	.	.	87	5	131	0	.	94
CCT2	10576	bcgsc.ca	37	12	69987386	69987386	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CCT2	NM_006431	exon10	c.T975C	p.L325L	.	.	62	4	90	0	.	651
CDC123	8872	bcgsc.ca	37	10	12272959	12272959	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CDC123	NM_006023	exon7	c.T453C	p.C151C	.	.	98	4	127	0	.	514
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	19838935	19838944	+	Frame_Shift_Del	DEL	CCCCTTTTGG	CCCCTTTTGG	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	CCCCTTTTGG	CCCCTTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CDH18	NM_001167667	exon3	c.152_161del	p.51_54del	.	.	121	38	144	0	.	159
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176011757	176011757	+	Silent	SNP	C	C	T	rs180931810		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CDHR2	NM_017675	exon19	c.C2475T	p.H825H	.	.	175	40	135	0	C|0.999;T|0.001	70
CENPF	1063	bcgsc.ca	37	1	214836993	214836993	+	Silent	SNP	G	G	A	rs148637528		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CENPF	NM_016343	exon20	c.G9201A	p.T3067T	.	.	65	4	70	0	G|1.000;A|0.000	567
CEP192	55125	bcgsc.ca	37	18	13049581	13049581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CEP192	NM_032142	exon16	c.A2791G	p.R931G	.	.	80	4	102	0	.	27
CHD8	57680	bcgsc.ca	37	14	21862203	21862203	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CHD8	NM_001170629	exon31	c.T5751C	p.G1917G	.	.	67	4	80	0	.	277
CHRM3	1131	broad.mit.edu;bcgsc.ca	37	1	240072451	240072451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CHRM3	NM_000740	exon5	c.A1700G	p.K567R	.	.	173	6	124	0	.	95
CLCN5	1184	bcgsc.ca	37	X	49846452	49846452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CLCN5	NM_001127898	exon9	c.T881C	p.I294T	.	.	62	5	85	0	.	132
CNTNAP5	129684	broad.mit.edu;bcgsc.ca	37	2	125521613	125521613	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CNTNAP5	NM_130773	exon16	c.T2419A	p.F807I	.	.	177	10	253	0	.	524
COL6A6	131873	bcgsc.ca	37	3	130287235	130287235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	COL6A6	NM_001102608	exon5	c.A2188G	p.T730A	.	.	70	4	94	1	.	76
COMMD3	23412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22606855	22606855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	COMMD3	NM_012071	exon2	c.A182G	p.H61R	.	.	193	69	296	0	.	115
COX1	5742	broad.mit.edu	37	MT	6844	6844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	ENST00000361624	exon1	c.T941C	p.I314T	.	.	8	4	30	0	.	.
CR1	1378	broad.mit.edu	37	1	207787831	207787831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CR1	NM_000651	exon40	c.G6658T	p.E2220X	.	.	316	9	220	0	.	93
CREB3L3	84699	bcgsc.ca	37	19	4170202	4170202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CREB3L3	NM_032607	exon7	c.A887G	p.N296S	.	.	138	5	117	1	.	92
CRYGS	1427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186256648	186256648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CRYGS	NM_017541	exon3	c.G374T	p.R125L	.	.	127	53	165	0	.	90
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2954519	2954519	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CSMD1	NM_033225	exon47	c.A6990G	p.G2330G	.	.	40	4	101	0	.	86
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	.	.	245	78	339	0	.	24361
CUL4B	8450	bcgsc.ca	37	X	119677641	119677641	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CUL4B	NM_003588	exon10	c.T1251C	p.V417V	.	.	92	4	67	0	.	227
CWF19L2	143884	ucsc.edu;bcgsc.ca	37	11	107309856	107309856	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CWF19L2	NM_152434	exon6	c.T624C	p.G208G	.	.	37	4	68	0	.	68
CYP2R1	120227	bcgsc.ca	37	11	14900761	14900761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	CYP2R1	NM_024514	exon4	c.A1229G	p.D410G	.	.	85	4	116	0	.	91
DCAF8L2	347442	hgsc.bcm.edu	37	X	27765411	27765411	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DCAF8L2	NM_001136533	exon1	c.G399A	p.E133E	.	.	23	6	36	0	.	42
DCLRE1A	9937	bcgsc.ca	37	10	115612501	115612501	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DCLRE1A	NM_014881	exon1	c.T441C	p.S147S	.	.	123	5	185	0	.	228
DDX60	55601	bcgsc.ca	37	4	169204720	169204720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DDX60	NM_017631	exon13	c.A1599T	p.Q533H	.	.	59	4	44	0	.	25
DGKB	1607	bcgsc.ca	37	7	14622734	14622734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DGKB	NM_145695	exon17	c.T1465C	p.F489L	.	.	85	4	118	0	.	276
DGKQ	1609	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	967112	967112	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DGKQ	NM_001347	exon1	c.G159T	p.P53P	.	.	30	12	55	1	.	537
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	55340777	55340777	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DHCR24	NM_014762	exon4	c.C601T	p.R201X	.	.	80	33	107	0	.	91
DHX33	56919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5365670	5365670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DHX33	NM_020162	exon3	c.G647T	p.R216M	.	.	185	57	202	0	.	228
DIS3L	115752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66604085	66604085	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DIS3L	NM_001143688	exon5	c.T582A	p.P194P	.	.	30	12	63	0	.	92
DNAH11	8701	bcgsc.ca	37	7	21940710	21940710	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DNAH11	.	.	.	.	.	.	107	5	126	0	.	146
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225510419	225510419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DNAH14	NM_001373	exon60	c.T9110C	p.I3037T	.	.	247	50	222	0	.	23
DOPEY1	23033	bcgsc.ca	37	6	83849764	83849764	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DOPEY1	NM_015018	exon22	c.T5166C	p.T1722T	.	.	141	5	197	0	.	155
DRG1	4733	broad.mit.edu	37	22	31819393	31819393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DRG1	NM_004147	exon6	c.A710G	p.N237S	.	.	180	5	261	1	.	90
DSE	29940	bcgsc.ca	37	6	116754521	116754521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DSE	NM_001080976	exon5	c.T926C	p.V309A	.	.	73	4	80	0	.	91
DUOXA1	90527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45413291	45413291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	DUOXA1	NM_144565	exon6	c.C334G	p.L112V	.	.	110	37	115	0	.	227
ELMOD3	84173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	85617517	85617517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ELMOD3	NM_032213	exon11	c.A1072C	p.T358P	.	.	230	16	283	1	.	92
EPHA4	2043	bcgsc.ca	37	2	222301233	222301233	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	EPHA4	NM_004438	exon13	c.T2232C	p.H744H	.	.	89	5	115	0	.	1441
EPX	8288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56276412	56276412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	EPX	NM_000502	exon8	c.T1132C	p.S378P	.	.	33	5	26	0	.	92
ESF1	51575	bcgsc.ca	37	20	13747573	13747573	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ESF1	NM_016649	exon9	c.1519-2A>G	.	.	.	103	4	99	0	.	91
FAM154B	283726	bcgsc.ca	37	15	82574836	82574836	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FAM154B	NM_001008226	exon3	c.T630C	p.A210A	.	.	64	4	114	0	.	70
FAM175B	23172	bcgsc.ca	37	10	126507974	126507974	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FAM175B	NM_032182	exon4	c.A222G	p.K74K	.	.	128	5	175	0	.	186
FAM186A	121006	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50749671	50749671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FAM186A	NM_001145475	exon4	c.T944C	p.M315T	.	.	96	40	133	1	.	68
FAM210A	125228	bcgsc.ca	37	18	13682053	13682053	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001098801	exon3	c.T24C	p.T8T	.	.	80	5	125	0	.	.
FBXL16	146330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	745857	745857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FBXL16	NM_153350	exon3	c.G700T	p.A234S	.	.	111	47	195	0	.	226
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1808893	1808893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FGFR3	NM_001163213	exon18	c.G2331A	p.Q777Q	.	.	133	43	204	0	.	9542
FMO2	2327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171174626	171174626	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FMO2	NM_001460	exon7	c.G1036C	p.E346Q	.	.	119	25	95	0	.	91
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159782775	159782775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FNIP2	NM_020840	exon12	c.C1312G	p.L438V	.	.	170	49	222	0	.	68
FOCAD	54914	broad.mit.edu;ucsc.edu	37	9	20926358	20926358	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_017794	exon28	c.T3020A	p.L1007X	.	.	77	24	124	1	.	.
FOLH1	2346	broad.mit.edu;bcgsc.ca	37	11	49208238	49208238	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FOLH1	NM_004476	exon5	c.A597G	p.K199K	.	.	305	10	405	0	.	579
FOLH1B	219595	broad.mit.edu;bcgsc.ca	37	11	89424674	89424674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FOLH1B	NM_153696	exon12	c.C1024T	p.L342F	.	.	213	7	212	0	.	519
FOSB	2354	bcgsc.ca	37	19	45974053	45974053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	FOSB	NM_001114171	exon2	c.A293G	p.D98G	.	.	82	4	89	0	.	848
GFPT1	2673	bcgsc.ca	37	2	69590692	69590692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GFPT1	NM_001244710	exon4	c.T334C	p.S112P	.	.	77	4	86	0	.	91
GLDC	2731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6592200	6592200	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GLDC	NM_000170	exon11	c.A1425G	p.T475T	.	.	46	21	69	0	.	92
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19745726	19745726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GMIP	NM_016573	exon17	c.G1762A	p.V588I	.	.	83	25	69	0	.	91
GNB1	2782	broad.mit.edu	37	1	1747301	1747301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GNB1	NM_002074	exon5	c.A97G	p.I33V	.	.	145	4	197	0	.	227
GOLIM4	27333	bcgsc.ca	37	3	167747015	167747015	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GOLIM4	NM_014498	exon11	c.A1509G	p.E503E	.	.	88	5	107	0	.	291
GPAM	57678	bcgsc.ca	37	10	113917055	113917055	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GPAM	NM_020918	exon19	c.A2073G	p.E691E	.	.	127	5	174	0	.	92
GPHB5	122876	bcgsc.ca	37	14	63784424	63784424	+	RNA	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	GPHB5	.	.	.	.	.	.	104	5	155	0	.	67
HAVCR1	26762	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	156479625	156479625	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HAVCR1	NM_001099414	exon4	c.C420T	p.T140T	.	.	296	21	308	0	.	92
HBS1L	10767	bcgsc.ca	37	6	135358174	135358174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HBS1L	NM_001145207	exon5	c.T1421C	p.F474S	.	.	52	4	75	0	.	92
HCFC2	29915	bcgsc.ca	37	12	104461853	104461853	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HCFC2	NM_013320	exon3	c.C441T	p.N147N	.	.	60	4	98	0	.	92
HCN1	348980	broad.mit.edu	37	5	45396771	45396771	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HCN1	NM_021072	exon4	c.A1053G	p.K351K	.	.	386	6	358	0	.	91
HDC	3067	bcgsc.ca	37	15	50544657	50544657	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HDC	NM_002112	exon9	c.T1011C	p.H337H	.	.	211	7	264	0	.	156
HECTD4	283450	bcgsc.ca	37	12	112696338	112696338	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001109662	exon20	c.T2658C	p.G886G	.	.	70	4	117	0	.	.
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	43484273	43484273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HECW1	NM_015052	exon11	c.A1502G	p.E501G	.	.	96	8	93	0	.	669
HJURP	55355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	234749510	234749510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HJURP	NM_018410	exon8	c.T1916G	p.L639W	.	.	30	8	47	0	.	69
HMBOX1	79618	bcgsc.ca	37	8	28827776	28827776	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HMBOX1	NM_024567	exon4	c.A240G	p.P80P	.	.	92	4	184	0	.	91
HOXC9	3225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54394044	54394044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HOXC9	NM_006897	exon1	c.A72G	p.L24L	.	.	110	27	133	0	.	155
HTR2A	3356	bcgsc.ca	37	13	47469683	47469683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HTR2A	NM_000621	exon2	c.A359G	p.D120G	.	.	99	5	120	1	.	519
HTR3E	285242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183822009	183822009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HTR3E	NM_182589	exon3	c.T364A	p.C122S	.	.	49	11	66	0	.	92
HTT	3064	bcgsc.ca	37	4	3156071	3156071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	HTT	NM_002111	exon27	c.A3550G	p.K1184E	.	.	54	4	57	0	.	281
IKBIP	121457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	99020519	99020519	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	IKBIP	NM_153687	exon3	c.323delA	p.Q108fs	.	.	91	22	99	0	.	226
IKBKAP	8518	bcgsc.ca	37	9	111641027	111641027	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	IKBKAP	NM_003640	exon34	c.A3576G	p.R1192R	.	.	67	4	69	0	.	318
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37524843	37524843	+	Missense_Mutation	SNP	C	C	T	rs143857582	byfrequency	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	IL2RB	NM_000878	exon10	c.G949A	p.G317S	.	.	60	16	85	0	C|0.999;T|0.001	90
INTS4	92105	bcgsc.ca	37	11	77672105	77672105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	INTS4,NS,carcinoma,+1	INTS4	NM_033547	exon5	c.T551C	p.V184A	.	.	130	5	156	0	.	92
KDM5B	10765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202704644	202704644	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	KDM5B	NM_006618	exon22	c.G3336A	p.L1112L	.	.	399	72	320	1	.	273
KIAA0195	9772	bcgsc.ca	37	17	73494299	73494299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	KIAA0195	NM_014738	exon28	c.T3533C	p.L1178P	.	.	100	5	169	2	.	91
KIAA0226L	80183	bcgsc.ca	37	13	46942315	46942315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_025113	exon5	c.A688G	p.S230G	.	.	136	5	139	0	.	.
KIAA1257	57501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128712024	128712024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_020741	exon2	c.A124G	p.R42G	.	.	131	45	203	0	.	.
KIF18A	81930	bcgsc.ca	37	11	28098675	28098675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	KIF18A	NM_031217	exon10	c.A1304G	p.E435G	.	.	49	4	68	0	.	92
KRT17	3872	broad.mit.edu;bcgsc.ca	37	17	39775874	39775874	+	Missense_Mutation	SNP	C	C	T	rs148013099		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	KRT17	NM_000422	exon8	c.G1271A	p.R424H	.	.	768	15	1005	1	C|1.000;T|0.000	92
KRTAP15-1	254950	bcgsc.ca	37	21	31812694	31812694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	KRTAP15-1	NM_181623	exon1	c.A49G	p.S17G	.	.	67	4	128	0	.	90
LAMB1	3912	bcgsc.ca	37	7	107616291	107616291	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LAMB1	NM_002291	exon10	c.T1032C	p.C344C	.	.	53	4	62	0	.	97
LCA5	167691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80196750	80196750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LCA5	NM_001122769	exon8	c.G2065T	p.D689Y	.	.	100	39	128	0	.	90
LENG8	114823	bcgsc.ca	37	19	54967813	54967813	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LENG8	NM_052925	exon11	c.1446-2A>G	.	.	.	62	4	87	0	.	91
LINGO1	84894	broad.mit.edu	37	15	77907512	77907512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LINGO1	NM_032808	exon2	c.T737C	p.I246T	.	.	190	5	225	0	.	24
LNX2	222484	bcgsc.ca	37	13	28155466	28155466	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LNX2	NM_153371	exon2	c.A375G	p.Q125Q	.	.	66	4	122	0	.	228
LOC100873065	0	bcgsc.ca	37	X	23216644	23216644	+	RNA	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	.	.	.	87	5	99	0	.	.
LOC642236	0	bcgsc.ca	37	9	68433564	68433564	+	RNA	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	.	.	.	255	18	298	6	.	.
LOXL3	84695	bcgsc.ca	37	2	74761454	74761454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LOXL3	NM_032603	exon11	c.A1928G	p.E643G	.	.	191	6	253	0	.	226
LRP1	4035	broad.mit.edu;bcgsc.ca	37	12	57604994	57604994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LRP1	NM_002332	exon84	c.T12952C	p.C4318R	.	.	121	6	166	0	.	596
LRP1B	53353	bcgsc.ca	37	2	141660682	141660682	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LRP1B	NM_018557	exon23	c.T3573C	p.P1191P	.	.	72	4	115	0	.	311
LRRC30	339291	bcgsc.ca	37	18	7231362	7231362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LRRC30	NM_001105581	exon1	c.C226T	p.L76F	.	.	88	4	132	0	.	24
LRRC69	100130742	bcgsc.ca	37	8	92145414	92145414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001129890	exon4	c.A460G	p.N154D	.	.	78	4	54	0	.	.
LSM6	11157	bcgsc.ca	37	4	147108533	147108533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	LSM6	NM_007080	exon3	c.A202G	p.N68D	.	.	85	4	102	0	.	226
MAML2	84441	ucsc.edu	37	11	95825374	95825374	+	Silent	SNP	T	T	C	rs112603485		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAML2	NM_032427	exon2	c.A1821G	p.Q607Q	.	.	114	1	188	1	C|1.000;|0.000	850
MAP4K3	8491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39535117	39535117	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAP4K3	NM_003618	exon15	c.A1086G	p.S362S	.	.	52	11	73	0	.	550
MAP4K4	9448	bcgsc.ca	37	2	102483031	102483031	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAP4K4	NM_001242559	exon18	c.C2112T	p.F704F	.	.	80	4	117	0	.	547
MAST3	23031	broad.mit.edu;bcgsc.ca	37	19	18241483	18241483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAST3	NM_015016	exon13	c.A1316G	p.H439R	.	.	133	6	150	0	.	502
MAVS	57506	bcgsc.ca	37	20	3842117	3842117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MAVS	NM_020746	exon4	c.T431C	p.V144A	.	.	140	7	127	0	.	90
MDC1	9656	bcgsc.ca	37	6	30680850	30680850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MDC1	NM_014641	exon5	c.A869G	p.E290G	.	.	180	7	245	1	.	273
MGAT3	4248	broad.mit.edu	37	22	39884415	39884415	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MGAT3	NM_002409	exon2	c.C1063T	p.Q355X	.	.	44	3	91	0	.	90
MOCOS	55034	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	33831219	33831219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MOCOS	NM_017947	exon11	c.A2137G	p.R713G	.	.	48	5	54	0	.	91
MORN1	79906	bcgsc.ca	37	1	2321426	2321426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MORN1	NM_024848	exon2	c.T86C	p.V29A	.	.	84	4	117	0	.	92
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	132649562	132649562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MOXD1	NM_015529	exon5	c.G835T	p.G279C	.	.	102	5	119	0	.	515
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60767531	60767531	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MRC2	NM_006039	exon26	c.C3757A	p.R1253R	.	.	252	74	366	1	.	117
MTF2	22823	bcgsc.ca	37	1	93580282	93580282	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MTF2	NM_001164392	exon4	c.T324C	p.C108C	.	.	100	4	115	0	.	92
MYBBP1A	10514	bcgsc.ca	37	17	4445183	4445183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MYBBP1A	NM_014520	exon23	c.T3091C	p.C1031R	.	.	75	4	90	0	.	92
MYH8	4626	bcgsc.ca	37	17	10309368	10309368	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MYH8	NM_002472	exon21	c.T2422C	p.L808L	.	.	101	4	155	0	.	101
MYL6B	140465	bcgsc.ca	37	12	56548848	56548848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MYL6B	NM_001199629	exon4	c.A212G	p.E71G	.	.	46	4	79	0	.	90
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16794852	16794852	+	Missense_Mutation	SNP	G	G	A	rs192053260	by1000genomes	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MYO10	NM_012334	exon4	c.C370T	p.R124C	.	.	118	55	101	0	G|0.999;A|0.000	3
MYO3A	53904	broad.mit.edu	37	10	26385503	26385503	+	Silent	SNP	A	A	G	rs112809849	byfrequency	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	MYO3A	NM_017433	exon17	c.A1668G	p.L556L	.	.	125	4	157	0	A|0.999;G|0.001	1007
N4BP2	55728	bcgsc.ca	37	4	40122138	40122138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	N4BP2	NM_018177	exon9	c.A2407G	p.R803G	.	.	69	4	113	0	.	602
NCOA6	23054	broad.mit.edu;bcgsc.ca	37	20	33337267	33337267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NCOA6	NM_014071	exon9	c.G2731A	p.A911T	.	.	265	8	275	1	.	292
NEK4	6787	ucsc.edu;bcgsc.ca	37	3	52775493	52775493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NEK4	NM_003157	exon13	c.T2027C	p.L676P	.	.	37	4	86	0	.	358
NEU3	10825	broad.mit.edu;bcgsc.ca	37	11	74716844	74716844	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NEU3	NM_006656	exon3	c.T693C	p.P231P	.	.	169	7	214	0	.	24
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178098799	178098799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NFE2L2	NM_006164	exon2	c.A246C	p.E82D	.	.	127	52	180	0	.	90
NLRC3	197358	bcgsc.ca	37	16	3613397	3613397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NLRC3	NM_178844	exon5	c.T1541C	p.L514P	.	.	66	4	106	0	.	96
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31685081	31685081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	NOL4	NM_003787	exon3	c.G458A	p.R153Q	.	.	147	56	180	0	.	93
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4869815	4869815	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	OR51S1	NM_001004758	exon1	c.T624C	p.F208F	.	.	46	16	90	0	.	72
OSTCP1	202459	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159262851	159262851	+	RNA	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	.	.	.	87	31	122	0	.	.
OVCH1	341350	bcgsc.ca	37	12	29630056	29630056	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	OVCH1	NM_183378	exon12	c.T1356C	p.A452A	.	.	79	4	107	0	.	210
PAAF1	80227	bcgsc.ca	37	11	73635737	73635737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PAAF1	NM_025155	exon11	c.T1096C	p.Y366H	.	.	78	4	98	0	.	70
PAN2	9924	bcgsc.ca	37	12	56717330	56717330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PAN2	NM_001127460	exon15	c.A2237G	p.E746G	.	.	131	5	179	1	.	702
PARN	5073	broad.mit.edu;bcgsc.ca	37	16	14704624	14704624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PARN	NM_002582	exon7	c.A431G	p.E144G	.	.	114	7	158	0	.	24
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223084872	223084872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PAX3	NM_181457	exon7	c.G1160A	p.G387D	.	.	118	42	180	0	.	1821
PCDH11X	27328	broad.mit.edu	37	X	91873380	91873380	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCDH11X	NM_032968	exon7	c.G3485C	p.S1162T	.	.	389	6	319	1	.	193
PCDH18	54510	bcgsc.ca	37	4	138449645	138449645	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCDH18	NM_019035	exon3	c.A2727G	p.G909G	.	.	138	5	212	2	.	185
PCDHA6	56142	broad.mit.edu;bcgsc.ca	37	5	140209065	140209065	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCDHA6	NM_018909	exon1	c.C1389T	p.F463F	.	.	381	36	415	1	.	92
PCDHB13	56123	broad.mit.edu	37	5	140595239	140595239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCDHB13	NM_018933	exon1	c.C1544G	p.A515G	.	.	335	5	418	0	.	93
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	95733104	95733104	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PCSK1	NM_000439	exon12	c.1658delT	p.F553fs	.	.	151	39	158	0	.	92
PDF	64146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	69363005	69363005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_022341	exon2	c.C652A	p.H218N	.	.	67	23	83	0	.	.
PFKL	5211	broad.mit.edu	37	21	45744414	45744414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PFKL	NM_002626	exon17	c.G1691A	p.R564H	.	.	108	5	133	0	.	251
PHYHIPL	84457	bcgsc.ca	37	10	60936656	60936656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PHYHIPL	NM_032439	exon1	c.A43G	p.S15G	.	.	56	4	63	0	.	90
PLAT	5327	bcgsc.ca	37	8	42036463	42036463	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PLAT	NM_000930	exon13	c.A1482G	p.G494G	.	.	194	7	152	0	.	226
PMVK	10654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154904854	154904854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PMVK	NM_006556	exon2	c.G133A	p.G45S	.	.	235	59	180	0	.	115
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203037705	203037705	+	Silent	SNP	C	C	T	rs200137584		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PPFIA4	NM_015053	exon14	c.C1755T	p.F585F	.	.	104	59	94	0	C|0.998;T|0.002	230
PPP1R9A	55607	broad.mit.edu	37	7	94540137	94540137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PPP1R9A	NM_017650	exon2	c.T712G	p.L238V	.	.	163	5	159	0	.	208
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	16014922	16014922	+	Missense_Mutation	SNP	G	G	T	rs137853006	alternate_allele	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PROM1	NM_006017	exon10	c.C1117A	p.R373S	.	.	66	20	90	0	.	207
PRSS38	339501	bcgsc.ca	37	1	228004935	228004935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PRSS38	NM_183062	exon3	c.A337G	p.M113V	.	.	115	5	79	0	.	92
PSTPIP2	9050	bcgsc.ca	37	18	43652129	43652129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PSTPIP2	NM_024430	exon1	c.A26G	p.N9S	.	.	33	6	88	0	.	227
PTGFR	5737	bcgsc.ca	37	1	78958464	78958464	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PTGFR	NM_000959	exon2	c.T36C	p.P12P	.	.	64	4	89	0	.	527
PTPRC	5788	bcgsc.ca	37	1	198672443	198672443	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PTPRC	NM_002838	exon7	c.C600T	p.A200A	.	.	57	4	43	0	.	295
PTPRC	5788	bcgsc.ca	37	1	198703475	198703475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	PTPRC	NM_002838	exon22	c.T2198C	p.V733A	.	.	85	4	82	0	.	295
PTTG2	10744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	37962092	37962092	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_006607	exon1	c.G37T	p.E13X	.	.	164	57	187	0	.	.
QTRT1	81890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10823446	10823446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	QTRT1	NM_031209	exon8	c.G874T	p.A292S	.	.	103	54	82	0	.	91
RALY	22913	hgsc.bcm.edu	37	20	32664868	32664868	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	RALY	NM_016732	exon8	c.C693T	p.G231G	.	.	11	4	12	0	.	91
RASGRP2	10235	broad.mit.edu	37	11	64509495	64509495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	RASGRP2	NM_001098671	exon3	c.A163G	p.K55E	.	.	327	9	415	0	.	227
RASGRP3	25780	bcgsc.ca	37	2	33752214	33752214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	RASGRP3	NM_170672	exon11	c.A818G	p.E273G	.	.	54	4	110	0	.	661
REV1	51455	bcgsc.ca	37	2	100019447	100019447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	REV1	NM_016316	exon20	c.A3289G	p.S1097G	.	.	61	4	99	0	.	92
REV3L	5980	bcgsc.ca	37	6	111696726	111696726	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	REV3L	NM_002912	exon13	c.T2832C	p.S944S	.	.	56	4	61	0	.	294
REXO1	57455	bcgsc.ca	37	19	1818542	1818542	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	REXO1	NM_020695	exon10	c.A2955G	p.S985S	.	.	91	4	91	0	.	90
RLF	6018	bcgsc.ca	37	1	40705140	40705140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	RLF	NM_012421	exon8	c.T4766C	p.V1589A	.	.	80	4	101	0	.	93
RNF17	56163	bcgsc.ca	37	13	25370419	25370419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	RNF17	NM_001184993	exon11	c.A1385G	p.D462G	.	.	59	4	60	0	.	228
RNU6-71	100873774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56566691	56566691	+	RNA	SNP	G	G	A	rs183558657	by1000genomes	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	.	.	.	87	23	145	0	G|0.999;A|0.000	.
RPGR	6103	bcgsc.ca	37	X	38156557	38156557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	RPGR	NM_001034853	exon11	c.T1394C	p.L465P	.	.	113	5	166	0	.	131
RPL6	6128	bcgsc.ca	37	12	112843158	112843158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	RPL6	NM_001024662	exon7	c.G737A	p.R246H	.	.	91	4	106	0	.	153
S100A7A	338324	broad.mit.edu	37	1	153391721	153391721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	S100A7A	NM_176823	exon3	c.A242G	p.D81G	.	.	426	7	389	1	.	91
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50906873	50906873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SBF1	NM_002972	exon2	c.G73T	p.G25C	.	.	52	14	50	0	.	90
SCG3	29106	bcgsc.ca	37	15	52005570	52005570	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SCG3	NM_013243	exon11	c.T1248C	p.I416I	.	.	53	4	89	0	.	91
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	3678680	3678680	+	Missense_Mutation	SNP	G	G	A	rs143792155		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SDK1	NM_152744	exon3	c.G503A	p.R168H	.	.	135	30	118	0	G|1.000;A|0.000	138
SEC63	11231	bcgsc.ca	37	6	108224103	108224103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SEC63	NM_007214	exon12	c.T1154C	p.L385P	.	.	69	4	87	0	.	227
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84628838	84628838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SEMA3D	NM_152754	exon17	c.A2252C	p.K751T	.	.	313	84	319	0	.	138
SERPINC1	462	bcgsc.ca	37	1	173873183	173873183	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SERPINC1	NM_000488	exon7	c.A1239G	p.E413E	.	.	165	6	149	0	.	227
SH3GL2	6456	bcgsc.ca	37	9	17789482	17789482	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SH3GL2	NM_003026	exon6	c.T558C	p.A186A	.	.	73	4	91	0	.	91
SLC24A2	25769	bcgsc.ca	37	9	19528080	19528080	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SLC24A2	NM_020344	exon8	c.A1536G	p.V512V	.	.	80	4	124	0	.	517
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78222437	78222437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SLC26A11	NM_173626	exon15	c.G1486A	p.A496T	.	.	186	56	249	0	.	90
SLC28A3	64078	bcgsc.ca	37	9	86912876	86912876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SLC28A3	NM_001199633	exon7	c.T728C	p.I243T	.	.	74	4	105	0	.	94
SLCO6A1	133482	bcgsc.ca	37	5	101811439	101811439	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SLCO6A1	NM_173488	exon4	c.A861G	p.P287P	.	.	72	4	76	0	.	96
SLIRP	81892	bcgsc.ca	37	14	78177215	78177215	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SLIRP	NM_001267864	exon2	c.T132C	p.H44H	.	.	54	4	67	0	.	90
SMARCAL1	50485	bcgsc.ca	37	2	217347599	217347599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SMARCAL1	NM_014140	exon18	c.A2764G	p.M922V	.	.	75	4	85	0	.	293
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158651436	158651436	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SPTA1	NM_003126	exon4	c.412delC	p.H138fs	.	.	233	70	187	0	.	142
SRRM2	23524	bcgsc.ca	37	16	2807482	2807482	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SRRM2	NM_016333	exon3	c.A252G	p.E84E	.	.	138	5	176	0	.	93
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53085080	53085080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ST18	NM_014682	exon10	c.G341A	p.R114K	.	.	66	8	38	0	.	95
STAG2	10735	bcgsc.ca	37	X	123189987	123189987	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	STAG2	NM_001042749	exon14	c.A1206G	p.E402E	.	.	76	4	48	0	.	134
STARD13	90627	bcgsc.ca	37	13	33741722	33741722	+	Silent	SNP	A	A	G	rs145045223		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	STARD13	NM_178006	exon2	c.T207C	p.A69A	.	.	45	4	91	0	A|1.000;G|0.000	94
STRA8	346673	bcgsc.ca	37	7	134939909	134939909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	STRA8	NM_182489	exon8	c.T850C	p.F284L	.	.	110	5	94	0	.	68
SVEP1	79987	ucsc.edu;bcgsc.ca	37	9	113171173	113171173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SVEP1	NM_153366	exon38	c.A6707G	p.K2236R	.	.	24	4	43	0	.	75
SWI5	375757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131038585	131038585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001040011	exon1	c.C161T	p.P54L	.	.	82	29	134	0	.	.
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	64497758	64497758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	SYNE2	NM_182914	exon45	c.C6904T	p.Q2302X	.	.	258	85	393	1	.	164
TBCK	93627	bcgsc.ca	37	4	107157921	107157921	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TBCK	NM_001163436	exon13	c.A1215G	p.E405E	.	.	96	5	139	0	.	336
TDRD5	163589	bcgsc.ca	37	1	179631262	179631262	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TDRD5	NM_001199085	exon15	c.A2346G	p.P782P	.	.	68	4	80	0	.	94
TEX33	339669	bcgsc.ca	37	22	37397913	37397913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001163857	exon3	c.A454G	p.S152G	.	.	142	5	154	0	.	.
TEX9	374618	bcgsc.ca	37	15	56680717	56680717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TEX9	NM_198524	exon5	c.A311G	p.K104R	.	.	54	4	78	0	.	90
THEG	51298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	375911	375911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	THEG	NM_016585	exon1	c.G60T	p.R20S	.	.	46	10	40	0	.	91
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155498016	155498016	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TIAM2	NM_012454	exon9	c.A2428T	p.I810F	.	.	71	37	99	0	.	93
TICAM1	148022	broad.mit.edu	37	19	4817291	4817291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TICAM1	NM_182919	exon2	c.C1099T	p.P367S	.	.	240	6	285	0	.	153
TMC7	79905	bcgsc.ca	37	16	19034507	19034507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TMC7	NM_024847	exon5	c.T701C	p.L234P	.	.	53	4	73	0	.	93
TNPO1	3842	bcgsc.ca	37	5	72189233	72189233	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TNPO1	NM_002270	exon17	c.A1926G	p.E642E	.	.	55	4	85	0	.	228
TOR1B	27348	bcgsc.ca	37	9	132566601	132566601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TOR1B	NM_014506	exon2	c.A449G	p.K150R	.	.	126	5	151	0	.	90
TRIP12	9320	bcgsc.ca	37	2	230632442	230632442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TRIP12	NM_004238	exon41	c.T5807C	p.L1936S	.	.	65	4	62	0	.	572
TRPC3	7222	bcgsc.ca	37	4	122833217	122833217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TRPC3	NM_001130698	exon5	c.A1373G	p.K458R	.	.	65	4	84	0	.	92
TRPM6	140803	bcgsc.ca	37	9	77502762	77502762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TRPM6	NM_017662	exon1	c.A11G	p.Q4R	.	.	136	6	203	0	.	335
TSPAN31	6302	bcgsc.ca	37	12	58140400	58140400	+	Missense_Mutation	SNP	T	T	C	rs202198747	alternate_allele	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TSPAN31	NM_005981	exon4	c.T341C	p.V114A	.	.	165	5	189	0	T|0.999;A|0.000	446
TTC18	118491	bcgsc.ca	37	10	75053093	75053093	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TTC18	NM_145170	exon17	c.A1908G	p.E636E	.	.	64	4	93	0	.	92
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147824847	147824847	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TTC29	NM_031956	exon6	c.T435A	p.A145A	.	.	95	45	130	0	.	90
TTC40	54777	bcgsc.ca	37	10	134682840	134682840	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001200049	exon33	c.A4548G	p.E1516E	.	.	56	4	80	0	.	.
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35471393	35471393	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	TULP1	NM_003322	exon13	c.C1266T	p.T422T	.	.	56	13	81	0	.	92
UBE2V2	7336	bcgsc.ca	37	8	48962495	48962495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	UBE2V2	NM_003350	exon3	c.T248C	p.V83A	.	.	88	4	103	0	.	659
UBR1	197131	bcgsc.ca	37	15	43348606	43348606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	UBR1	NM_174916	exon11	c.A1217G	p.D406G	.	.	85	4	142	0	.	91
UCK2	7371	broad.mit.edu	37	1	165876954	165876954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	UCK2	NM_012474	exon7	c.A680G	p.D227G	.	.	631	7	421	1	.	91
USP45	85015	bcgsc.ca	37	6	99912543	99912543	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	USP45	NM_001080481	exon13	c.T1245C	p.N415N	.	.	64	4	86	0	.	637
USP9Y	8287	bcgsc.ca	37	Y	14930427	14930427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	USP9Y	NM_004654	exon33	c.A4903G	p.T1635A	.	.	74	4	102	0	.	136
VCAN	1462	bcgsc.ca	37	5	82868376	82868376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	VCAN	NM_004385	exon13	c.A9877G	p.T3293A	.	.	89	5	91	0	.	238
VIPAS39	63894	bcgsc.ca	37	14	77910657	77910657	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_001193314	exon8	c.T532C	p.L178L	.	.	98	4	129	0	.	.
VPS72	6944	broad.mit.edu	37	1	151149418	151149418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	VPS72	NM_001271087	exon6	c.T830C	p.I277T	.	.	163	4	140	0	.	154
VRK1	7443	bcgsc.ca	37	14	97347535	97347535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	VRK1	NM_003384	exon13	c.T1181C	p.V394A	.	.	66	4	53	0	.	358
VWA3A	146177	bcgsc.ca	37	16	22122257	22122257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	VWA3A	NM_173615	exon8	c.T631C	p.S211P	.	.	131	5	153	0	.	1
WASF3	10810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	27255234	27255234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WASF3	NM_006646	exon8	c.C760T	p.P254S	.	.	107	32	209	0	.	91
WDR66	144406	bcgsc.ca	37	12	122392208	122392208	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WDR66	NM_001178003	exon10	c.A1503G	p.K501K	.	.	57	4	74	0	.	92
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1634133	1634133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WDR81	NM_001163809	exon3	c.T3860C	p.L1287P	.	.	80	29	119	0	.	91
WDR90	197335	bcgsc.ca	37	16	710111	710111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WDR90	NM_145294	exon27	c.T3238C	p.C1080R	.	.	49	4	59	0	.	92
WHSC1L1	54904	bcgsc.ca	37	8	38147016	38147016	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	WHSC1L1	NM_023034	exon18	c.A3126G	p.E1042E	.	.	75	4	177	0	.	658
XKR7	343702	broad.mit.edu	37	20	30556166	30556166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	XKR7	NM_001011718	exon1	c.C188T	p.A63V	.	.	61	11	72	1	.	137
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113067682	113067682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZC3H6	NM_198581	exon4	c.G557A	p.G186E	.	.	71	31	112	0	.	93
ZC3H7A	29066	ucsc.edu	37	16	11852308	11852308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZC3H7A	NM_014153	exon20	c.A2407G	p.T803A	.	.	46	4	101	1	.	94
ZFAND5	7763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74970914	74970914	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZFAND5	NM_001102421	exon6	c.A597G	p.R199R	.	.	161	40	281	0	.	90
ZIM3	114026	broad.mit.edu;bcgsc.ca	37	19	57647430	57647430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZIM3	NM_052882	exon5	c.A275G	p.K92R	.	.	154	5	154	0	.	92
ZNF100	163227	bcgsc.ca	37	19	21910430	21910430	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF100	NM_173531	exon5	c.T684C	p.I228I	.	.	59	4	61	0	.	90
ZNF25	219749	bcgsc.ca	37	10	38241494	38241494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF25	NM_145011	exon6	c.A932G	p.E311G	.	.	59	4	74	0	.	154
ZNF365	22891	bcgsc.ca	37	10	64159493	64159493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF365	NM_014951	exon5	c.A1169G	p.N390S	.	.	81	4	111	0	.	92
ZNF461	92283	broad.mit.edu	37	19	37130367	37130367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	NM_153257	exon6	c.A880G	p.I294V	.	.	80	4	58	0	.	.
ZNF555	148254	bcgsc.ca	37	19	2852841	2852841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF555	NM_152791	exon4	c.G778A	p.E260K	.	.	55	4	43	0	.	91
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52375810	52375810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF577	NM_032679	exon7	c.A1433C	p.Y478S	.	.	69	24	57	0	.	91
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35274530	35274530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF770	NM_014106	exon3	c.G1106A	p.C369Y	.	.	77	19	128	0	.	91
ZNF772	400720	bcgsc.ca	37	19	57985086	57985086	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF772	NM_001024596	exon5	c.A1026G	p.R342R	.	.	74	4	70	0	.	90
ZNF77	58492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2934207	2934207	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF77	NM_021217	exon4	c.C918T	p.S306S	.	.	157	78	198	0	.	91
ZNF846	162993	bcgsc.ca	37	19	9873985	9873985	+	Missense_Mutation	SNP	C	C	T	rs200997360	alternate_allele	TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNF846	NM_001077624	exon3	c.G115A	p.E39K	.	.	80	4	81	0	C|0.999;G|0.001	23
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29438502	29438502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	ZNRF3	NM_001206998	exon3	c.G446C	p.R149P	.	.	61	12	72	0	.	69
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117658021	117658022	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A39V-01A-11D-A20W-10	TCGA-DD-A39V-11A-11D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b73462a7-17f2-4187-87f1-9eb91590d20d	63c0be5f-ca62-4a05-a22d-9ddb8480fb65	.	.	.	.	.	p.A1377E	.	.	.	.	.	.	.	
