Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC11	85320	bcgsc.ca	37	16	48245015	48245015	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ABCC11	NM_033151	exon10	c.A1452G	p.Q484Q	.	.	79	4	79	1	.	95
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17428453	17428453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ABCC8	NM_000352	exon25	c.G3144T	p.R1048S	.	.	87	17	123	0	.	91
ABLIM3	22885	broad.mit.edu	37	5	148577805	148577805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ABLIM3	NM_014945	exon4	c.T175C	p.S59P	.	.	450	7	441	1	.	93
ACSL4	2182	bcgsc.ca	37	X	108912286	108912286	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ACSL4	NM_022977	exon11	c.A1242G	p.G414G	.	.	95	4	124	0	.	290
ANK3	288	bcgsc.ca	37	10	61926612	61926612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ANK3	NM_020987	exon22	c.A2521G	p.N841D	.	.	94	4	129	0	.	107
APBB1	322	bcgsc.ca	37	11	6422780	6422780	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	APBB1	NM_001257322	exon8	c.A867G	p.G289G	.	.	119	5	131	0	.	136
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	141051870	141051870	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ARAP3	NM_022481	exon11	c.1386-2A>T	.	.	.	152	8	144	0	.	291
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27099008	27099008	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ARID1A	NM_006015	exon13	c.C3424T	p.Q1142X	.	.	189	79	211	0	.	584
ARRDC3	57561	bcgsc.ca	37	5	90667266	90667266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ARRDC3	NM_020801	exon8	c.C1196T	p.P399L	.	.	67	4	98	0	.	136
ATAD1	84896	bcgsc.ca	37	10	89544401	89544401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ATAD1	NM_032810	exon5	c.T409C	p.C137R	.	.	85	4	126	0	.	578
ATP5D	513	bcgsc.ca	37	19	1242458	1242458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ATP5D	NM_001001975	exon2	c.T145C	p.F49L	.	.	95	5	116	1	.	90
ATP9A	10079	bcgsc.ca	37	20	50287657	50287657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ATP9A	NM_006045	exon12	c.A1177G	p.T393A	.	.	75	5	82	0	.	94
BCOR	54880	bcgsc.ca	37	X	39930943	39930943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	BCOR	NM_001123385	exon5	c.A2998G	p.M1000V	.	.	211	6	386	1	.	229
BRD9	65980	ucsc.edu	37	5	878525	878525	+	Missense_Mutation	SNP	T	T	A	rs508016		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	BRD9	NM_023924	exon11	c.A1216T	p.M406L	.	.	81	15	112	13	T|0.750;A|0.250	90
C17orf70	80233	bcgsc.ca	37	17	79517798	79517798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	C17orf70	NM_025161	exon3	c.T722C	p.V241A	.	.	65	4	82	0	.	92
C17orf75	64149	bcgsc.ca	37	17	30661814	30661814	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	C17orf75	NM_022344	exon7	c.A714G	p.K238K	.	.	79	4	111	0	.	23
CACNA2D1	781	bcgsc.ca	37	7	81620548	81620548	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CACNA2D1	NM_000722	exon21	c.A1749G	p.K583K	.	.	71	4	117	0	.	96
CAPN14	440854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31414909	31414909	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	NM_001145122	exon11	c.C1170A	p.G390G	.	.	114	22	171	0	.	.
CAPNS1	826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36637097	36637097	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CAPNS1	NM_001749	exon9	c.605-1G>C	.	.	.	57	7	88	0	.	90
CCDC64B	146439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	3085397	3085397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	NM_001103175	exon1	c.G101A	p.R34Q	.	.	87	37	97	0	.	.
CCDC80	151887	ucsc.edu;bcgsc.ca	37	3	112328903	112328903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CCDC80	NM_199511	exon6	c.G2347A	p.V783M	.	.	44	4	76	0	.	92
CCDC88A	55704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55589549	55589549	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CCDC88A	NM_018084	exon7	c.A522G	p.Q174Q	.	.	268	47	331	1	.	94
CD1B	910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158299817	158299817	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CD1B	NM_001764	exon3	c.C432A	p.V144V	.	.	263	86	238	0	.	92
CLGN	1047	bcgsc.ca	37	4	141317097	141317097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CLGN	NM_001130675	exon11	c.A1025G	p.E342G	.	.	101	5	115	0	.	93
COQ3	51805	bcgsc.ca	37	6	99823822	99823822	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	COQ3	NM_017421	exon5	c.G723A	p.V241V	.	.	65	4	109	0	.	91
CPB1	1360	bcgsc.ca	37	3	148563351	148563351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CPB1	NM_001871	exon9	c.T919C	p.S307P	.	.	137	5	181	0	.	92
CSDE1	7812	bcgsc.ca	37	1	115276671	115276671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CSDE1	NM_001242891	exon9	c.A788G	p.K263R	.	.	73	4	89	0	.	227
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3267015	3267015	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CSMD1	NM_033225	exon13	c.G1674A	p.E558E	.	.	112	55	146	0	.	86
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67660509	67660509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CTCF	NM_006565	exon8	c.G1409A	p.R470H	.	.	98	31	130	0	.	91
CTNNB1	1499	hgsc.bcm.edu	37	3	41266620	41266620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CTNNB1	NM_001098209	exon4	c.G417T	p.L139F	.	.	52	8	78	0	.	24361
CUX1	1523	bcgsc.ca	37	7	101877446	101877446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CUX1	NM_001202543	exon22	c.T3581C	p.V1194A	.	.	52	4	45	1	.	160
CYP2C9	1559	bcgsc.ca	37	10	96740961	96740961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	CYP2C9	NM_000771	exon7	c.A983G	p.E328G	.	.	119	5	120	0	.	96
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15397	15397	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	ENST00000361789	exon1	c.A651T	p.K217N	.	.	34	15	63	0	.	.
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6648374	6648374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	DCHS1	NM_003737	exon14	c.C5896T	p.R1966C	.	.	123	30	149	0	.	73
DENND4A	10260	bcgsc.ca	37	15	66031061	66031061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	DENND4A	NM_001144823	exon6	c.G784A	p.G262R	.	.	116	5	134	0	.	229
DHX16	8449	ucsc.edu;bcgsc.ca	37	6	30624171	30624171	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	DHX16	NM_003587	exon15	c.C2427T	p.T809T	.	.	45	4	63	0	.	228
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182848473	182848473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	DHX9	NM_001357	exon21	c.G2440A	p.G814S	.	.	148	29	147	0	.	92
DOCK5	80005	bcgsc.ca	37	8	25250367	25250367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	DOCK5	NM_024940	exon44	c.T4496C	p.L1499P	.	.	69	4	114	0	.	71
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95224587	95224587	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ELL2	NM_012081	exon12	c.G1911A	p.E637E	.	.	81	14	125	0	.	90
EME1	146956	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48452910	48452910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	EME1	NM_152463	exon2	c.A341G	p.D114G	.	.	121	55	181	1	.	227
EPHA4	2043	bcgsc.ca	37	2	222310872	222310872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	EPHA4	NM_004438	exon9	c.A1745G	p.E582G	.	.	76	4	76	0	.	1441
ERAP1	51752	bcgsc.ca	37	5	96136599	96136599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ERAP1	NM_001198541	exon3	c.A629G	p.E210G	.	.	77	4	88	0	.	70
ESCO2	157570	bcgsc.ca	37	8	27634510	27634510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ESCO2	NM_001017420	exon3	c.T685C	p.S229P	.	.	45	4	53	0	.	90
FAM160A2	84067	bcgsc.ca	37	11	6244401	6244401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FAM160A2	NM_032127	exon4	c.A845G	p.D282G	.	.	97	4	146	0	.	92
FAM160B1	57700	bcgsc.ca	37	10	116595935	116595935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FAM160B1	NM_020940	exon5	c.A452G	p.E151G	.	.	46	4	54	0	.	91
FAM186A	121006	bcgsc.ca	37	12	50746414	50746414	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FAM186A	NM_001145475	exon4	c.A4201C	p.T1401P	.	.	133	15	195	8	.	68
FAM186A	121006	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50746424	50746424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FAM186A	NM_001145475	exon4	c.G4191C	p.M1397I	.	.	128	21	188	5	.	68
FANCI	55215	bcgsc.ca	37	15	89822002	89822002	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FANCI	NM_001113378	exon14	c.T1378C	p.L460L	.	.	50	4	68	0	.	92
FANCM	57697	ucsc.edu;bcgsc.ca	37	14	45650690	45650690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FANCM	NM_020937	exon15	c.T4280C	p.V1427A	.	.	44	4	85	0	.	569
FASN	2194	bcgsc.ca	37	17	80041413	80041413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FASN	NM_004104	exon31	c.T5321C	p.L1774P	.	.	64	4	88	0	.	90
FGD6	55785	bcgsc.ca	37	12	95604795	95604795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FGD6	NM_018351	exon2	c.A265G	p.S89G	.	.	240	6	351	1	.	137
FGFR1	2260	bcgsc.ca	37	8	38275881	38275881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FGFR1	NM_001174067	exon11	c.A1388G	p.D463G	.	.	47	4	80	0	.	1793
FKBP9	11328	broad.mit.edu	37	7	33042404	33042404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FKBP9	NM_007270	exon9	c.T1489C	p.F497L	.	.	230	6	263	0	.	651
FLG2	388698	hgsc.bcm.edu;broad.mit.edu	37	1	152327767	152327767	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FLG2	NM_001014342	exon3	c.2495delG	p.G832fs	.	.	208	18	166	0	.	151
FOLH1	2346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	49229931	49229931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FOLH1	NM_004476	exon1	c.G31C	p.A11P	.	.	42	21	45	0	.	579
FPGT-TNNI3K	100526835	bcgsc.ca	37	1	74833604	74833604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	NM_001112808	exon15	c.T1580C	p.V527A	.	.	63	4	81	0	.	.
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FRG1B	.	.	.	.	.	.	426	21	541	13	.	22
FTSJ3	117246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61898837	61898837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FTSJ3	NM_017647	exon16	c.A1763G	p.Q588R	.	.	78	13	72	0	.	91
FZD3	7976	bcgsc.ca	37	8	28384986	28384986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	FZD3	NM_017412	exon5	c.C709T	p.P237S	.	.	65	4	84	0	.	659
GABPA	2551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	27141414	27141414	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GABPA	NM_001197297	exon10	c.G1236A	p.A412A	.	.	225	89	334	0	.	227
GALNT6	11226	broad.mit.edu;bcgsc.ca	37	12	51758083	51758083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GALNT6	NM_007210	exon6	c.A871G	p.T291A	.	.	130	6	198	1	.	92
GDF2	2658	bcgsc.ca	37	10	48414402	48414402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GDF2	NM_016204	exon2	c.T466C	p.C156R	.	.	197	6	250	0	.	229
GLB1L	79411	bcgsc.ca	37	2	220102390	220102390	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GLB1L	NM_024506	exon16	c.T1533C	p.P511P	.	.	155	6	157	0	.	90
GNL1	2794	broad.mit.edu	37	6	30522615	30522615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GNL1	NM_005275	exon4	c.T454C	p.F152L	.	.	149	5	195	0	.	93
GOLGB1	2804	bcgsc.ca	37	3	121383858	121383858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GOLGB1	NM_001256486	exon21	c.A9590G	p.D3197G	.	.	95	4	108	0	.	161
GPATCH2	55105	bcgsc.ca	37	1	217793551	217793551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GPATCH2	NM_018040	exon2	c.A347G	p.D116G	.	.	70	4	61	0	.	91
GPR98	84059	ucsc.edu;bcgsc.ca	37	5	90124798	90124798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GPR98	NM_032119	exon77	c.A16406G	p.Y5469C	.	.	39	4	49	0	.	103
GTF3C1	2975	bcgsc.ca	37	16	27475823	27475823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	GTF3C1	NM_001520	exon34	c.T5690C	p.L1897P	.	.	106	5	113	0	.	94
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71008284	71008284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HKDC1	NM_025130	exon10	c.C1370T	p.T457I	.	.	115	52	110	0	.	95
HLA-DRB1	3123	bcgsc.ca	37	6	32557446	32557446	+	Missense_Mutation	SNP	G	G	C	rs148093782	byfrequency	TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HLA-DRB1	NM_002124	exon1	c.C74G	p.P25R	.	.	228	13	319	4	G|0.919;C|0.081	1
HMGXB3	22993	broad.mit.edu	37	5	149406432	149406432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HMGXB3	NM_014983	exon8	c.T1624C	p.F542L	.	.	171	4	135	0	.	24
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121431424	121431424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HNF1A	NM_000545	exon3	c.T628A	p.S210T	.	.	109	21	131	0	.	1745
HOXB6	3216	bcgsc.ca	37	17	46675474	46675474	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HOXB6	NM_018952	exon3	c.T39C	p.T13T	.	.	127	6	149	0	.	90
HPS3	84343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148868468	148868468	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HPS3	NM_032383	exon6	c.1245+1G>A	.	.	.	110	18	131	0	.	158
HPS5	11234	bcgsc.ca	37	11	18316579	18316579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	HPS5	NM_181507	exon14	c.A1772G	p.E591G	.	.	128	5	160	0	.	133
IBTK	25998	bcgsc.ca	37	6	82924521	82924521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	IBTK	NM_015525	exon12	c.T1627C	p.S543P	.	.	133	6	204	0	.	92
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73723530	73723530	+	Missense_Mutation	SNP	G	G	A	rs137971337		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ITGB4	NM_001005731	exon4	c.G208A	p.A70T	.	.	132	36	155	0	G|1.000;A|0.000	227
KBTBD4	55709	bcgsc.ca	37	11	47597146	47597146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	KBTBD4	NM_018095	exon3	c.A743G	p.K248R	.	.	103	5	143	1	.	91
KIF20A	10112	hgsc.bcm.edu	37	5	137519196	137519196	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	KIF20A	NM_005733	exon9	c.C1065T	p.A355A	.	.	77	4	39	0	.	90
KPNA7	402569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98792911	98792911	+	Missense_Mutation	SNP	G	G	T	rs183241291	by1000genomes;alternate_allele	TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	KPNA7	NM_001145715	exon4	c.C335A	p.A112E	.	.	67	24	62	0	G|0.999;A|0.000	158
KRIT1	889	bcgsc.ca	37	7	91864125	91864125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	KRIT1	NM_194456	exon10	c.A842G	p.D281G	.	.	56	4	96	0	.	132
KRT2	3849	hgsc.bcm.edu	37	12	53045634	53045635	+	In_Frame_Ins	INS	-	-	CTCCAAAGCCGCTGCCGC	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	KRT2	NM_000423	exon1	c.293_294insGCGGCAGCGGCTTTGGAG	p.G98delinsGGSGFGG	.	.	89	25	92	0	.	92
KRT8	3856	bcgsc.ca	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	108	10	112	2	.	92
KRTAP5-3	387266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1629410	1629410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	KRTAP5-3	NM_001012708	exon1	c.C206A	p.S69Y	.	.	239	34	237	0	.	92
LAMC1	3915	bcgsc.ca	37	1	183086545	183086545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LAMC1	NM_002293	exon9	c.A1655G	p.D552G	.	.	202	6	175	0	.	252
LHFP	10186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	40175212	40175212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LHFP	NM_005780	exon2	c.C142T	p.R48W	.	.	134	23	181	0	.	683
LIG3	3980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33310396	33310396	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LIG3	NM_013975	exon2	c.C372T	p.P124P	.	.	81	14	131	0	.	728
LONRF3	79836	broad.mit.edu	37	X	118109141	118109141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LONRF3	NM_001031855	exon1	c.G398T	p.S133I	.	.	8	2	16	0	.	289
LRIF1	55791	bcgsc.ca	37	1	111490951	111490951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LRIF1	NM_018372	exon4	c.A1940G	p.E647G	.	.	104	5	162	0	.	93
LRP2	4036	broad.mit.edu;bcgsc.ca	37	2	170088225	170088225	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LRP2	NM_004525	exon31	c.A5226G	p.R1742R	.	.	295	7	219	0	.	175
LRRC48	83450	bcgsc.ca	37	17	17919427	17919427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LRRC48	NM_031294	exon13	c.A1376G	p.D459G	.	.	63	4	76	0	.	46
LRTM2	654429	bcgsc.ca	37	12	1940643	1940643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	LRTM2	NM_001039029	exon4	c.T610C	p.C204R	.	.	100	5	119	0	.	135
MAL	4118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95713853	95713853	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MAL	NM_022438	exon2	c.G243A	p.E81E	.	.	179	64	267	0	.	514
MAP3K7	6885	bcgsc.ca	37	6	91228216	91228216	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MAP3K7	NM_145331	exon16	c.A1590G	p.A530A	.	.	39	4	66	0	.	980
MCM4	4173	bcgsc.ca	37	8	48888407	48888407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MCM4	NM_182746	exon16	c.T2498C	p.I833T	.	.	64	4	85	0	.	230
MED23	9439	bcgsc.ca	37	6	131944564	131944564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MED23	NM_015979	exon5	c.A323G	p.E108G	.	.	64	4	75	0	.	24
MIR520D	574482	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	54223426	54223426	+	RNA	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	.	.	.	.	.	.	62	7	82	0	.	.
MLH1	4292	bcgsc.ca	37	3	37081737	37081737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MLH1	NM_000249	exon14	c.T1619C	p.L540S	.	.	80	4	99	0	.	2559
MPDU1	9526	bcgsc.ca	37	17	7490842	7490842	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MPDU1	NM_004870	exon7	c.T717C	p.P239P	.	.	92	6	141	0	.	90
MPP1	4354	bcgsc.ca	37	X	154020474	154020474	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MPP1	NM_001166461	exon2	c.A189G	p.G63G	.	.	129	5	165	0	.	132
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	10602112	10602112	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MRVI1	NM_130385	exon20	c.C2385T	p.T795T	.	.	59	5	87	0	.	25
MSN	4478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	64955217	64955217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MSN	NM_002444	exon8	c.G884A	p.R295H	.	.	223	9	287	0	.	1086
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100686943	100686943	+	Silent	SNP	G	G	A	rs201108444		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MUC17	NM_001040105	exon3	c.G12246A	p.T4082T	.	.	191	40	245	0	.	95
MYH9	4627	bcgsc.ca	37	22	36680291	36680291	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MYH9	NM_002473	exon40	c.C5613T	p.R1871R	.	.	51	4	52	0	.	292
MYO5B	4645	bcgsc.ca	37	18	47367766	47367766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MYO5B	NM_001080467	exon35	c.T4670C	p.L1557P	.	.	71	4	77	0	.	72
MYOM3	127294	bcgsc.ca	37	1	24400745	24400745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MYOM3	NM_152372	exon23	c.T2873C	p.L958P	.	.	114	5	193	0	.	93
MYT1	4661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62859313	62859313	+	Silent	SNP	C	C	T	rs61746507	byfrequency	TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	MYT1	NM_004535	exon18	c.C2664T	p.P888P	.	.	113	52	171	0	C|0.998;T|0.002	704
NF2	4771	bcgsc.ca	37	22	30057244	30057244	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NF2	NM_000268	exon8	c.C726T	p.H242H	.	.	63	4	83	0	.	4696
NHS	4810	bcgsc.ca	37	X	17744724	17744724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NHS	NM_198270	exon6	c.A2435G	p.K812R	.	.	69	4	120	0	.	197
NHS	4810	broad.mit.edu	37	X	17750551	17750551	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NHS	NM_198270	exon8	c.A4860G	p.P1620P	.	.	167	4	189	0	.	197
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37007558	37007558	+	Silent	SNP	A	A	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NIPBL	NM_015384	exon18	c.A4221C	p.T1407T	.	.	118	51	162	0	.	293
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37007562	37007562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NIPBL	NM_015384	exon18	c.A4225G	p.T1409A	.	.	117	51	158	0	.	293
NISCH	11188	bcgsc.ca	37	3	52514327	52514327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NISCH	NM_001276293	exon13	c.T1544C	p.I515T	.	.	105	5	133	0	.	93
NOS2	4843	bcgsc.ca	37	17	26101447	26101447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NOS2	NM_000625	exon12	c.T1312C	p.S438P	.	.	74	5	103	0	.	156
NRAP	4892	bcgsc.ca	37	10	115377282	115377282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NRAP	NM_001261463	exon26	c.A2905G	p.K969E	.	.	74	4	90	0	.	522
NSMCE4A	54780	bcgsc.ca	37	10	123719890	123719890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NSMCE4A	NM_017615	exon8	c.A971G	p.D324G	.	.	162	5	199	0	.	90
NUP107	57122	bcgsc.ca	37	12	69085894	69085894	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NUP107	NM_020401	exon5	c.448+2T>C	.	.	.	71	4	103	0	.	629
NUP188	23511	broad.mit.edu	37	9	131745266	131745266	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	NUP188	NM_015354	exon17	c.T1755C	p.C585C	.	.	142	4	150	0	.	207
OR12D3	81797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29342651	29342651	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	OR12D3	NM_030959	exon1	c.G414A	p.V138V	.	.	81	34	90	0	.	133
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29080097	29080097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	OR2J3	NM_001005216	exon1	c.T430G	p.C144G	.	.	331	132	450	1	.	90
P4HTM	54681	broad.mit.edu;bcgsc.ca	37	3	49038898	49038898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	P4HTM	NM_177938	exon3	c.A464G	p.E155G	.	.	99	6	132	1	.	205
PALMD	54873	bcgsc.ca	37	1	100154889	100154889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PALMD	NM_017734	exon7	c.A1073G	p.Q358R	.	.	71	4	104	1	.	71
PAN2	9924	bcgsc.ca	37	12	56722096	56722096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PAN2	NM_014871	exon4	c.A499G	p.S167G	.	.	147	5	155	1	.	702
PCDHB12	56124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140589809	140589809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PCDHB12	NM_018932	exon1	c.G1330A	p.V444I	.	.	165	9	135	0	.	93
PCDHB6	56130	bcgsc.ca	37	5	140530118	140530118	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PCDHB6	NM_018939	exon1	c.C280T	p.L94L	.	.	84	5	70	0	.	91
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140744161	140744161	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PCDHGA5	NM_032054	exon1	c.C264T	p.G88G	.	.	161	57	111	0	.	35
PCLO	27445	bcgsc.ca	37	7	82583312	82583312	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PCLO	NM_014510	exon5	c.T6957C	p.A2319A	.	.	157	6	227	0	.	29
PDE6B	5158	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	619799	619799	+	Silent	SNP	C	C	T	rs28510278	byfrequency	TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PDE6B	NM_001145291	exon1	c.C384T	p.S128S	.	.	41	11	42	0	C|0.975;T|0.025	90
PDE9A	5152	bcgsc.ca	37	21	44180944	44180944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PDE9A	NM_002606	exon13	c.T1012C	p.S338P	.	.	69	5	113	0	.	92
PGM3	5238	bcgsc.ca	37	6	83880177	83880177	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PGM3	NM_001199917	exon13	c.T1470C	p.I490I	.	.	136	5	227	0	.	90
PHPT1	29085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139744952	139744958	+	Frame_Shift_Del	DEL	CAGCAGA	CAGCAGA	-	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	CAGCAGA	CAGCAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PHPT1	NM_001135861	exon3	c.286_286del	p.96_96del	.	.	48	10	98	0	.	90
PLCL1	5334	hgsc.bcm.edu	37	2	199011628	199011628	+	Missense_Mutation	SNP	A	A	G	rs72556384	byfrequency	TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PLCL1	NM_006226	exon6	c.A3230G	p.K1077R	.	.	102	5	117	0	A|0.900;G|0.100	228
PMS1	5378	ucsc.edu	37	2	190718692	190718692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PMS1	NM_001128144	exon8	c.T850C	p.C284R	.	.	41	4	38	0	.	1396
PPARA	5465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46611213	46611213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PPARA	NM_001001928	exon4	c.G352T	p.A118S	.	.	80	27	119	0	.	611
PPID	5481	bcgsc.ca	37	4	159634345	159634345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PPID	NM_005038	exon7	c.A820G	p.S274G	.	.	78	4	137	0	.	226
PRKD3	23683	bcgsc.ca	37	2	37502981	37502981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PRKD3	NM_005813	exon9	c.A1303G	p.R435G	.	.	138	5	204	0	.	543
PRSS58	136541	bcgsc.ca	37	7	141957495	141957495	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PRSS58	NM_001001317	exon2	c.T33C	p.N11N	.	.	157	5	176	1	.	24
PRTG	283659	bcgsc.ca	37	15	55919308	55919308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PRTG	NM_173814	exon17	c.A2825G	p.H942R	.	.	54	4	45	0	.	92
PSD	5662	bcgsc.ca	37	10	104164781	104164781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PSD	NM_001270965	exon15	c.A2429G	p.E810G	.	.	147	5	178	0	.	272
PTGFR	5737	bcgsc.ca	37	1	78959149	78959149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PTGFR	NM_000959	exon2	c.A721G	p.R241G	.	.	77	4	91	0	.	527
PTK2	5747	ucsc.edu;bcgsc.ca	37	8	141774380	141774380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PTK2	NM_005607	exon15	c.A1253G	p.D418G	.	.	43	4	44	0	.	1517
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	214542934	214542934	+	Missense_Mutation	SNP	G	G	T	rs61749333	byfrequency;alternate_allele	TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	PTPN14	NM_005401	exon17	c.C3137A	p.T1046K	.	.	323	18	299	0	G|0.999;C|0.001	290
RAB14	51552	bcgsc.ca	37	9	123949270	123949270	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RAB14	NM_016322	exon5	c.C312T	p.S104S	.	.	60	4	86	0	.	227
RAG1	5896	broad.mit.edu	37	11	36594900	36594900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RAG1	NM_000448	exon2	c.G46A	p.D16N	.	.	68	4	98	0	.	230
RBL2	5934	bcgsc.ca	37	16	53499424	53499424	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RBL2	NM_005611	exon13	c.A1773G	p.E591E	.	.	96	5	131	0	.	841
RDX	5962	bcgsc.ca	37	11	110134897	110134897	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RDX	NM_001260493	exon5	c.T255C	p.F85F	.	.	107	4	124	0	.	90
RNF145	153830	bcgsc.ca	37	5	158630641	158630641	+	Silent	SNP	C	C	T	rs74841177		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RNF145	NM_001199380	exon2	c.G75A	p.K25K	.	.	24	5	24	0	.	525
RNF214	257160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117150670	117150670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RNF214	NM_207343	exon7	c.G1006A	p.E336K	.	.	61	21	81	0	.	90
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	20227476	20227476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RPS6KA3	NM_004586	exon3	c.A173T	p.E58V	.	.	102	33	177	0	.	1504
RTKN2	219790	bcgsc.ca	37	10	63983067	63983067	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	RTKN2	NM_145307	exon7	c.T711C	p.A237A	.	.	119	6	170	0	.	68
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	147830139	147830139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SAMD5	NM_001030060	exon1	c.C75A	p.N25K	.	.	211	63	223	0	.	68
SCRIB	23513	bcgsc.ca	37	8	144895661	144895661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SCRIB	NM_015356	exon5	c.A482G	p.N161S	.	.	81	5	73	0	.	228
SEC31B	25956	bcgsc.ca	37	10	102258918	102258918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SEC31B	NM_015490	exon13	c.A1583G	p.Q528R	.	.	62	5	103	0	.	91
SF3A3	10946	bcgsc.ca	37	1	38423891	38423891	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SF3A3	NM_006802	exon17	c.A1473G	p.T491T	.	.	95	6	153	1	.	90
SHOC2	8036	bcgsc.ca	37	10	112724118	112724118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SHOC2	NM_007373	exon2	c.T2C	p.M1T	.	.	45	4	63	0	.	524
SLC41A1	254428	bcgsc.ca	37	1	205764552	205764552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SLC41A1	NM_173854	exon9	c.A1127G	p.H376R	.	.	143	6	115	0	.	92
SLC46A2	57864	bcgsc.ca	37	9	115651842	115651842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SLC46A2	NM_033051	exon1	c.T1120C	p.F374L	.	.	74	4	82	1	.	90
SLC7A8	23428	bcgsc.ca	37	14	23634627	23634627	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SLC7A8	NM_012244	exon3	c.T375C	p.I125I	.	.	61	4	62	0	.	91
SLIT1	6585	bcgsc.ca	37	10	98794228	98794228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SLIT1	NM_003061	exon23	c.T2438C	p.L813P	.	.	56	4	92	0	.	94
SMARCD3	6604	bcgsc.ca	37	7	150938622	150938622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SMARCD3	NM_001003801	exon8	c.T895C	p.S299P	.	.	156	5	176	0	.	228
SMEK2	57223	bcgsc.ca	37	2	55831181	55831181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SMEK2	NM_001122964	exon3	c.A230G	p.N77S	.	.	153	5	173	0	.	228
SMG1	23049	broad.mit.edu;bcgsc.ca	37	16	18903588	18903588	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SMG1	NM_015092	exon4	c.T501C	p.A167A	.	.	207	7	277	0	.	1160
SPAST	6683	bcgsc.ca	37	2	32339709	32339709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SPAST	NM_014946	exon5	c.A685G	p.S229G	.	.	67	4	101	0	.	153
SPEG	10290	bcgsc.ca	37	2	220312979	220312979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SPEG	NM_005876	exon4	c.G1099A	p.G367S	.	.	63	4	62	0	.	383
SPHKAP	80309	bcgsc.ca	37	2	228881664	228881664	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SPHKAP	NM_030623	exon7	c.C3906T	p.T1302T	.	.	108	5	133	0	.	167
SPHKAP	80309	broad.mit.edu	37	2	228882962	228882962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SPHKAP	NM_030623	exon7	c.A2608G	p.S870G	.	.	336	7	309	0	.	167
SPINK9	643394	bcgsc.ca	37	5	147715188	147715188	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SPINK9	NM_001040433	exon1	c.A12G	p.T4T	.	.	84	4	103	0	.	22
STEAP3	55240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	120012401	120012401	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	STEAP3	NM_182915	exon5	c.1192delT	p.W398fs	.	.	104	39	170	0	.	91
SYNCRIP	10492	bcgsc.ca	37	6	86351138	86351138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	SYNCRIP	NM_006372	exon2	c.A20G	p.N7S	.	.	69	4	76	0	.	92
TAF2	6873	bcgsc.ca	37	8	120809276	120809276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TAF2	NM_003184	exon8	c.T1045C	p.S349P	.	.	48	4	53	0	.	274
TATDN1	83940	bcgsc.ca	37	8	125534441	125534441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TATDN1	NM_032026	exon3	c.A89G	p.D30G	.	.	80	4	157	0	.	90
TBC1D4	9882	bcgsc.ca	37	13	75873509	75873509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TBC1D4	NM_014832	exon17	c.T3113C	p.L1038P	.	.	85	4	112	0	.	95
THSD7A	221981	broad.mit.edu;bcgsc.ca	37	7	11486897	11486897	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	THSD7A	NM_015204	exon12	c.A2760G	p.G920G	.	.	106	6	146	0	.	71
TKTL2	84076	bcgsc.ca	37	4	164394427	164394427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TKTL2	NM_032136	exon1	c.A460G	p.M154V	.	.	93	4	96	0	.	95
TMED10	10972	bcgsc.ca	37	14	75602564	75602564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TMED10	NM_006827	exon4	c.C437T	p.P146L	.	.	91	4	127	0	.	90
TMEM95	339168	broad.mit.edu;bcgsc.ca	37	17	7259754	7259754	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TMEM95	NM_198154	exon6	c.C477T	p.I159I	.	.	95	5	139	0	.	90
TNKS2	80351	bcgsc.ca	37	10	93604777	93604777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TNKS2	NM_025235	exon17	c.T2161C	p.S721P	.	.	47	4	50	0	.	541
TNRC6A	27327	bcgsc.ca	37	16	24805973	24805973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TNRC6A	NM_014494	exon8	c.G3461A	p.S1154N	.	.	140	5	176	0	.	92
TP53BP1	7158	bcgsc.ca	37	15	43720248	43720248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TP53BP1	NM_001141980	exon18	c.T3794C	p.V1265A	.	.	184	5	212	0	.	294
TRIM23	373	bcgsc.ca	37	5	64920052	64920052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TRIM23	NM_033228	exon1	c.G50A	p.R17Q	.	.	67	4	67	0	.	230
TTC28	23331	ucsc.edu;bcgsc.ca	37	22	28379795	28379795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	NM_001145418	exon23	c.T5860C	p.S1954P	.	.	43	4	40	0	.	.
TTN	7273	bcgsc.ca	37	2	179595506	179595506	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TTN	NM_001267550	exon61	c.T17754C	p.P5918P	.	.	75	5	91	0	.	636
TULP3	7289	bcgsc.ca	37	12	3049776	3049776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	TULP3	NM_001160408	exon12	c.A1390G	p.T464A	.	.	134	5	218	1	.	226
UBE2L6	9246	broad.mit.edu;bcgsc.ca	37	11	57322029	57322029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	UBE2L6	NM_004223	exon3	c.A191G	p.K64R	.	.	199	7	229	2	.	227
USH2A	7399	bcgsc.ca	37	1	216221896	216221896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	USH2A	NM_206933	exon31	c.A6143G	p.N2048S	.	.	135	5	179	1	.	115
UVRAG	7405	bcgsc.ca	37	11	75827019	75827019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	UVRAG	NM_003369	exon14	c.A1357G	p.N453D	.	.	62	4	60	0	.	229
WDR45B	56270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	80576976	80576976	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	NM_019613	exon7	c.C647G	p.S216X	.	.	76	17	113	0	.	.
WEE1	7465	bcgsc.ca	37	11	9598808	9598808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	WEE1	NM_003390	exon5	c.A1139G	p.N380S	.	.	72	4	114	0	.	1404
WFDC5	149708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	43743715	43743715	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	WFDC5	NM_145652	exon1	c.C10T	p.Q4X	.	.	36	7	42	0	.	91
WFIKKN2	124857	bcgsc.ca	37	17	48917897	48917897	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	WFIKKN2	NM_175575	exon2	c.T1248C	p.Y416Y	.	.	46	4	47	0	.	93
WSCD2	9671	bcgsc.ca	37	12	108589611	108589611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	WSCD2	NM_014653	exon2	c.T2C	p.M1T	.	.	47	4	55	0	.	136
XRN1	54464	bcgsc.ca	37	3	142151583	142151583	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	XRN1	NM_001042604	exon2	c.A228G	p.K76K	.	.	148	6	189	1	.	93
YWHAE	7531	broad.mit.edu;bcgsc.ca	37	17	1265253	1265253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	YWHAE	NM_006761	exon3	c.A314G	p.D105G	.	.	78	6	95	0	.	659
ZNF226	7769	bcgsc.ca	37	19	44676369	44676369	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	NM_001146220	exon5	c.142+2T>C	.	.	.	79	5	109	0	.	.
ZNF263	10127	bcgsc.ca	37	16	3334113	3334113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ZNF263	NM_005741	exon1	c.A295G	p.S99G	.	.	100	5	158	0	.	94
ZNF3	7551	bcgsc.ca	37	7	99669013	99669013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ZNF3	NM_032924	exon6	c.A1094G	p.E365G	.	.	80	4	109	0	.	91
ZNF583	147949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56934521	56934521	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	ZNF583	NM_001159861	exon5	c.T494G	p.F165C	.	.	42	17	39	0	.	91
ZNF727	442319	broad.mit.edu	37	7	63529386	63529386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	NM_001159522	exon2	c.T121G	p.F41V	.	.	86	5	68	4	.	.
FAM186A	121006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50746361	50746362	+	Missense_Mutation	DNP	TT	TT	GG	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	TT	TT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	.	.	.	p.E1418A	.	.	.	.	.	.	.	
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24170902	24170903	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A39W-01A-11D-A20W-10	TCGA-DD-A39W-11A-11D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	394130eb-5ab8-4437-8d73-d17f4db7ac24	a7177a22-2989-4bc0-a618-67ca2b279962	.	.	.	.	.	p.G129F	.	.	.	.	.	.	.	
