Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	broad.mit.edu	37	7	48411792	48411792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCA13	NM_152701	exon33	c.G10831T	p.V3611L	.	.	301	5	293	0	.	521
ABCA2	20	hgsc.bcm.edu	37	9	139910249	139910249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCA2	NM_212533	exon23	c.A3482G	p.K1161R	.	.	192	8	247	0	.	90
ABCA6	23460	hgsc.bcm.edu	37	17	67096941	67096941	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCA6	NM_080284	exon22	c.T3009C	p.P1003P	.	.	89	4	125	0	.	159
ABCB7	22	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	74295254	74295254	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCB7	NM_004299	exon6	c.T801C	p.A267A	.	.	137	6	157	0	.	131
ABCC1	4363	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16184313	16184313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCC1	NM_004996	exon19	c.A2512G	p.I838V	.	.	62	19	84	0	.	94
ACIN1	22985	hgsc.bcm.edu	37	14	23548793	23548793	+	Missense_Mutation	SNP	C	C	T	rs80007670	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ACIN1	NM_001164814	exon6	c.G1925A	p.R642H	.	.	155	10	191	0	C|0.994;T|0.006	156
ACOT13	55856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24698153	24698153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ACOT13	NM_018473	exon2	c.A124G	p.M42V	.	.	90	34	103	0	.	90
ACY3	91703	hgsc.bcm.edu	37	11	67412312	67412312	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ACY3	NM_080658	exon7	c.A663G	p.E221E	.	.	93	4	130	0	.	90
ADCK4	79934	hgsc.bcm.edu	37	19	41220249	41220249	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ADCK4	NM_001142555	exon3	c.A156G	p.R52R	.	.	52	3	60	0	.	319
ADD3	120	hgsc.bcm.edu	37	10	111883829	111883829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ADD3	NM_001121	exon10	c.C1198T	p.H400Y	.	.	81	4	87	0	.	157
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44150363	44150363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AEBP1	NM_001129	exon12	c.T1440A	p.N480K	.	.	92	27	119	0	.	90
AHNAK2	113146	hgsc.bcm.edu;bcgsc.ca	37	14	105407781	105407781	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AHNAK2	NM_138420	exon7	c.A14007G	p.E4669E	.	.	74	4	124	0	.	47
AIM1	202	broad.mit.edu	37	6	107009363	107009363	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AIM1	NM_001624	exon18	c.T4902C	p.C1634C	.	.	104	3	162	0	.	139
AK7	122481	hgsc.bcm.edu	37	14	96937909	96937909	+	Silent	SNP	A	A	G	rs149831663	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AK7	NM_152327	exon13	c.A1452G	p.P484P	.	.	87	4	92	0	A|0.999;G|0.001	228
AKAP12	9590	bcgsc.ca	37	6	151672275	151672275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AKAP12	NM_005100	exon4	c.T2749C	p.S917P	.	.	62	4	108	0	.	293
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283258	74283259	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALB	NM_000477	exon11	c.1300_1301del	p.434_434del	.	.	97	15	105	0	.	96
ALKBH8	91801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	107403057	107403057	+	Missense_Mutation	SNP	T	T	C	rs202093339	alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALKBH8	NM_138775	exon8	c.A847G	p.T283A	.	.	174	7	188	0	T|0.999;A|0.000	68
ALX3	257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110607343	110607343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALX3	NM_006492	exon2	c.C460A	p.R154S	.	.	220	118	344	0	.	90
ANK2	287	bcgsc.ca	37	4	114267105	114267105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANK2	NM_001148	exon35	c.A4298G	p.E1433G	.	.	110	6	159	1	.	583
ANKMY2	57037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16640522	16640522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANKMY2	NM_020319	exon10	c.A1190T	p.E397V	.	.	65	21	63	0	.	514
ANKRD12	23253	hgsc.bcm.edu;bcgsc.ca	37	18	9254527	9254527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANKRD12	NM_015208	exon9	c.T1262C	p.V421A	.	.	76	4	80	0	.	92
ANLN	54443	hgsc.bcm.edu	37	7	36447349	36447349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANLN	NM_018685	exon5	c.A880T	p.T294S	.	.	57	1	34	0	.	517
ANO3	63982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	26664762	26664762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANO3	NM_031418	exon23	c.C2309T	p.A770V	.	.	137	41	171	0	.	93
ANO5	203859	hgsc.bcm.edu	37	11	22271814	22271814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANO5	NM_213599	exon10	c.T910C	p.F304L	.	.	93	4	151	0	.	515
ANO6	196527	hgsc.bcm.edu	37	12	45803139	45803139	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANO6	NM_001204803	exon17	c.1944-1G>A	.	.	.	53	4	75	0	.	516
APEH	327	hgsc.bcm.edu	37	3	49713569	49713569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	APEH	NM_001640	exon6	c.T523C	p.S175P	.	.	91	6	86	0	.	91
AR	367	hgsc.bcm.edu	37	X	66765176	66765176	+	Missense_Mutation	SNP	A	A	T	rs62636527		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AR	NM_000044	exon1	c.A188T	p.Q63L	.	.	63	10	94	0	A|0.982;T|0.018	661
AR	367	hgsc.bcm.edu	37	X	66765179	66765179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AR	NM_000044	exon1	c.A191T	p.Q64L	.	.	70	14	91	0	.	661
ARFGEF1	10565	broad.mit.edu;bcgsc.ca	37	8	68200237	68200237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARFGEF1	NM_006421	exon7	c.A980G	p.D327G	.	.	135	5	133	0	.	294
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148778702	148778702	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARHGAP10	NM_024605	exon5	c.385-2A>G	.	.	.	38	17	43	0	.	229
ARHGEF12	23365	hgsc.bcm.edu	37	11	120312472	120312472	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARHGEF12	NM_015313	exon14	c.T1149C	p.A383A	.	.	88	4	131	0	.	661
ARID1A	8289	hgsc.bcm.edu	37	1	27057832	27057832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARID1A	NM_006015	exon3	c.T1540C	p.S514P	.	.	194	9	314	0	.	584
ASPN	54829	hgsc.bcm.edu	37	9	95237024	95237024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ASPN	NM_001193335	exon2	c.G156T	p.E52D	.	.	72	0	103	0	.	514
ASXL2	55252	bcgsc.ca	37	2	25991695	25991695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ASXL2	NM_018263	exon6	c.A547G	p.R183G	.	.	135	6	133	1	.	23
ATAD1	84896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	89550120	89550120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATAD1	NM_032810	exon4	c.C329T	p.P110L	.	.	79	25	80	0	.	578
ATAD3B	83858	hgsc.bcm.edu	37	1	1431048	1431048	+	Missense_Mutation	SNP	A	A	G	rs201429000		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATAD3B	NM_031921	exon16	c.A1798G	p.T600A	.	.	114	5	141	0	.	44
ATG4D	84971	hgsc.bcm.edu;bcgsc.ca	37	19	10659671	10659671	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATG4D	NM_032885	exon6	c.T927C	p.G309G	.	.	117	5	138	0	.	90
ATN1	1822	hgsc.bcm.edu;bcgsc.ca	37	12	7050122	7050122	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATN1	NM_001007026	exon8	c.T3294C	p.T1098T	.	.	65	5	103	0	.	139
ATXN1	6310	broad.mit.edu	37	6	16327897	16327897	+	Missense_Mutation	SNP	C	C	A	rs184327938		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATXN1	NM_001128164	exon7	c.G645T	p.Q215H	.	.	81	6	71	0	C|0.926;A|0.074	93
AVL9	23080	hgsc.bcm.edu;bcgsc.ca	37	7	32590989	32590989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AVL9	NM_015060	exon5	c.A416G	p.H139R	.	.	68	4	85	0	.	90
AXDND1	126859	hgsc.bcm.edu	37	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	.	.	147	12	169	0	G|1.000;|0.000	93
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38483180	38483180	+	Missense_Mutation	SNP	A	A	G	rs111783779		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BAIAP2L2	NM_025045	exon11	c.T1210C	p.S404P	.	.	49	14	68	0	A|0.500;G|0.500	91
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38483183	38483183	+	Missense_Mutation	SNP	T	T	A	rs200520591		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BAIAP2L2	NM_025045	exon11	c.A1207T	p.T403S	.	.	49	13	69	0	.	91
BBS5	129880	hgsc.bcm.edu	37	2	170349443	170349443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BBS5	NM_152384	exon6	c.A446G	p.N149S	.	.	89	4	91	0	.	90
BECN1	8678	hgsc.bcm.edu	37	17	40970263	40970263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BECN1	NM_003766	exon7	c.A659G	p.E220G	.	.	199	8	245	0	.	228
BHLHB9	80823	hgsc.bcm.edu;bcgsc.ca	37	X	102004756	102004756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BHLHB9	NM_001142530	exon2	c.T833C	p.I278T	.	.	87	4	122	0	.	132
BLM	641	hgsc.bcm.edu	37	15	91292851	91292851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BLM	NM_000057	exon3	c.T353C	p.V118A	.	.	83	4	67	0	.	664
BPIFB3	359710	hgsc.bcm.edu	37	20	31644372	31644372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_182658	exon2	c.A149G	p.E50G	.	.	91	4	101	0	.	.
BPNT1	10380	bcgsc.ca	37	1	220240666	220240666	+	Missense_Mutation	SNP	T	T	G	rs75678851		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BPNT1	NM_006085	exon6	c.A452C	p.N151T	.	.	100	24	132	3	.	91
BTBD18	643376	hgsc.bcm.edu	37	11	57513286	57513286	+	Silent	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001145101	exon3	c.T459G	p.S153S	.	.	122	5	135	0	.	.
BUB1	699	hgsc.bcm.edu	37	2	111408295	111408295	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BUB1	NM_004336	exon18	c.T2031C	p.R677R	.	.	101	5	110	0	.	1060
C12orf66	144577	hgsc.bcm.edu	37	12	64588106	64588106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C12orf66	NM_152440	exon3	c.A854G	p.E285G	.	.	97	4	117	0	.	515
C14orf159	80017	bcgsc.ca	37	14	91681811	91681811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C14orf159	NM_001102368	exon13	c.G1627A	p.V543I	.	.	63	4	90	0	.	92
C16orf62	57020	hgsc.bcm.edu	37	16	19619534	19619534	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C16orf62	NM_020314	exon10	c.C1086T	p.A362A	.	.	98	4	127	0	.	69
C1orf111	284680	broad.mit.edu	37	1	162345193	162345193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C1orf111	NM_182581	exon2	c.A104G	p.D35G	.	.	490	8	272	1	.	69
C2CD3	26005	broad.mit.edu	37	11	73849975	73849975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C2CD3	NM_015531	exon5	c.A745G	p.T249A	.	.	98	3	112	0	.	75
C5	727	hgsc.bcm.edu	37	9	123776212	123776212	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C5	NM_001735	exon17	c.T2196C	p.C732C	.	.	87	4	129	0	.	92
C5	727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123738976	123738976	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C5	NM_001735	exon30	c.3864+2T>C	.	.	.	80	4	95	0	.	92
C9orf131	138724	broad.mit.edu	37	9	35045380	35045380	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C9orf131	NM_203299	exon2	c.A2754G	p.P918P	.	.	42	6	40	0	.	90
C9orf72	203228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27548315	27548315	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C9orf72	NM_018325	exon11	c.T1365G	p.I455M	.	.	61	15	64	0	.	517
CACNA1E	777	hgsc.bcm.edu	37	1	181767537	181767537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CACNA1E	NM_001205293	exon48	c.T6509C	p.L2170P	.	.	74	4	90	0	.	95
CAPN6	827	hgsc.bcm.edu	37	X	110490683	110490683	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CAPN6	NM_014289	exon12	c.T1656C	p.S552S	.	.	113	5	148	0	.	195
CARS	833	hgsc.bcm.edu	37	11	3059341	3059341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CARS	NM_001014437	exon7	c.A740G	p.E247G	.	.	94	4	111	0	.	664
CASZ1	54897	bcgsc.ca	37	1	10699511	10699511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CASZ1	NM_001079843	exon21	c.T4768C	p.S1590P	.	.	68	5	87	1	.	113
CBS	875	hgsc.bcm.edu;bcgsc.ca	37	21	44480560	44480560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CBS	NM_000071	exon12	c.G1136A	p.R379Q	.	.	54	4	58	0	.	90
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92952972	92952972	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCDC132	NM_017667	exon21	c.T1905A	p.V635V	.	.	39	9	59	0	.	90
CCDC178	374864	hgsc.bcm.edu	37	18	30517978	30517978	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001105528	exon22	c.T2601C	p.G867G	.	.	87	4	144	0	.	.
CCER1	196477	hgsc.bcm.edu;broad.mit.edu	37	12	91348442	91348442	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_152638	exon1	c.G78A	p.W26X	.	.	54	10	86	0	.	.
CCNA1	8900	bcgsc.ca	37	13	37016369	37016369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCNA1	NM_003914	exon8	c.A1274G	p.E425G	.	.	72	4	114	0	.	418
CCNH	902	hgsc.bcm.edu;bcgsc.ca	37	5	86703825	86703825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCNH	NM_001239	exon4	c.A493G	p.R165G	.	.	82	4	96	0	.	441
CD109	135228	hgsc.bcm.edu	37	6	74516714	74516714	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CD109	NM_133493	exon25	c.T3108C	p.S1036S	.	.	67	4	102	0	.	155
CD1E	913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158325665	158325665	+	Missense_Mutation	SNP	G	G	A	rs202212296		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CD1E	NM_001042584	exon4	c.G674A	p.R225H	.	.	503	38	284	0	G|0.999;A|0.000	93
CD207	50489	hgsc.bcm.edu	37	2	71062833	71062833	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CD207	NM_015717	exon2	c.73+1C>G	.	.	.	247	4	241	0	.	46
CDC40	51362	hgsc.bcm.edu	37	6	110540651	110540651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDC40	NM_015891	exon11	c.T1175C	p.V392A	.	.	86	4	114	0	.	90
CDC40	51362	hgsc.bcm.edu	37	6	110540992	110540992	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDC40	NM_015891	exon12	c.T1260C	p.A420A	.	.	106	5	181	0	.	90
CDCA2	157313	broad.mit.edu	37	8	25341513	25341513	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDCA2	NM_152562	exon10	c.T1152C	p.F384F	.	.	45	3	62	1	.	90
CDH17	1015	hgsc.bcm.edu	37	8	95161099	95161099	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDH17	NM_004063	exon14	c.T1800C	p.Y600Y	.	.	97	4	118	0	.	96
CDH23	64072	hgsc.bcm.edu	37	10	73567345	73567345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDH23	NM_022124	exon57	c.A8381G	p.E2794G	.	.	94	4	105	0	.	563
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61687550	61687550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDH8	NM_001796	exon12	c.G2362A	p.E788K	.	.	138	30	179	0	.	161
CDK5RAP2	55755	bcgsc.ca	37	9	123202095	123202095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDK5RAP2	NM_018249	exon24	c.A3304G	p.S1102G	.	.	80	5	102	0	.	229
CDK5RAP3	80279	ucsc.edu	37	17	46053334	46053334	+	Silent	SNP	A	A	G	rs202125432	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDK5RAP3	NM_176096	exon8	c.A753G	p.E251E	.	.	80	7	78	4	A|0.949;G|0.051	226
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37455988	37455988	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEBPZ	NM_005760	exon2	c.A348G	p.K116K	.	.	41	5	36	0	.	91
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109793709	109793709	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CELSR2	NM_001408	exon1	c.C1008T	p.P336P	.	.	56	25	65	0	.	526
CEP135	9662	hgsc.bcm.edu	37	4	56847463	56847463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEP135	NM_025009	exon13	c.T1697C	p.L566P	.	.	92	4	110	0	.	94
CEP152	22995	hgsc.bcm.edu;bcgsc.ca	37	15	49083508	49083508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEP152	NM_014985	exon8	c.A898G	p.R300G	.	.	72	4	101	0	.	70
CEP170	9859	broad.mit.edu	37	1	243333027	243333027	+	Silent	SNP	A	A	G	rs34466343	bycluster	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEP170	NM_014812	exon12	c.T1746C	p.R582R	.	.	485	6	487	1	.	93
CERS5	91012	hgsc.bcm.edu;broad.mit.edu	37	12	50529757	50529757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_147190	exon7	c.G732A	p.M244I	.	.	77	4	107	0	.	.
CHD3	1107	hgsc.bcm.edu	37	17	7804563	7804563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CHD3	NM_001005271	exon20	c.A3299G	p.E1100G	.	.	71	4	64	0	.	228
CHGB	1114	hgsc.bcm.edu	37	20	5903684	5903684	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CHGB	NM_001819	exon4	c.T894C	p.S298S	.	.	72	4	79	0	.	96
CIRH1A	84916	hgsc.bcm.edu	37	16	69187545	69187545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CIRH1A	NM_032830	exon9	c.A1061G	p.H354R	.	.	89	4	97	0	.	90
CLCA2	9635	hgsc.bcm.edu	37	1	86904780	86904780	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CLCA2	NM_006536	exon7	c.A1194G	p.K398K	.	.	88	4	136	0	.	155
CLCN1	1180	hgsc.bcm.edu	37	7	143043238	143043238	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CLCN1	NM_000083	exon18	c.T2178C	p.P726P	.	.	113	5	153	0	.	156
CNNM2	54805	hgsc.bcm.edu;bcgsc.ca	37	10	104679481	104679481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CNNM2	NM_199076	exon1	c.T1244C	p.L415P	.	.	61	4	38	0	.	515
CNTNAP4	85445	hgsc.bcm.edu;bcgsc.ca	37	16	76523688	76523688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CNTNAP4	NM_138994	exon12	c.T1769C	p.M590T	.	.	109	5	145	0	.	70
COL14A1	7373	broad.mit.edu	37	8	121290423	121290423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	COL14A1	NM_021110	exon27	c.T3287C	p.L1096P	.	.	180	4	95	0	.	543
COL23A1	91522	bcgsc.ca	37	5	177690212	177690212	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	COL23A1	NM_173465	exon9	c.A636G	p.P212P	.	.	158	6	177	0	.	91
COL4A3BP	10087	hgsc.bcm.edu;bcgsc.ca	37	5	74685511	74685511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	COL4A3BP	NM_001130105	exon13	c.T1574C	p.V525A	.	.	77	4	93	0	.	226
COX10	1352	hgsc.bcm.edu	37	17	13972945	13972945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	COX10	NM_001303	exon1	c.T23C	p.L8P	.	.	137	7	127	0	.	226
CPS1	1373	hgsc.bcm.edu	37	2	211476885	211476885	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CPS1	NM_001122633	exon21	c.T2454C	p.A818A	.	.	97	4	81	0	.	162
CSMD2	114784	hgsc.bcm.edu	37	1	34191012	34191012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CSMD2	NM_052896	exon17	c.T2513C	p.L838P	.	.	133	6	182	0	.	103
CTAGE5	4253	broad.mit.edu;bcgsc.ca	37	14	39787201	39787201	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CTAGE5	NM_001247989	exon17	c.T1461C	p.A487A	.	.	197	6	308	0	.	90
CUL9	23113	hgsc.bcm.edu;bcgsc.ca	37	6	43153709	43153709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CUL9	NM_015089	exon4	c.T767C	p.L256P	.	.	111	6	96	0	.	529
CUZD1	50624	hgsc.bcm.edu;bcgsc.ca	37	10	124595749	124595749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CUZD1	NM_022034	exon6	c.T935C	p.L312S	.	.	94	4	129	0	.	92
CWC27	10283	hgsc.bcm.edu;bcgsc.ca	37	5	64079686	64079686	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CWC27	NM_005869	exon4	c.T276C	p.R92R	.	.	91	4	62	0	.	90
CWF19L2	143884	hgsc.bcm.edu	37	11	107260852	107260852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CWF19L2	NM_152434	exon12	c.A1820G	p.K607R	.	.	100	4	132	0	.	68
CYLD	1540	bcgsc.ca	37	16	50783758	50783758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CYLD	NM_001042355	exon3	c.T149C	p.I50T	.	.	55	4	71	0	.	2444
CYP1A1	1543	hgsc.bcm.edu	37	15	75015354	75015354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CYP1A1	NM_000499	exon2	c.T85C	p.S29P	.	.	91	4	123	0	.	156
CYP2C18	1562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	96447910	96447910	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CYP2C18	NM_000772	exon3	c.G360A	p.W120X	.	.	187	57	240	0	.	95
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	14958	14958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	ENST00000361789	exon1	c.G212A	p.R71Q	.	.	9	3	42	0	.	.
DAAM1	23002	hgsc.bcm.edu;bcgsc.ca	37	14	59793328	59793328	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DAAM1	NM_001270520	exon11	c.A1275G	p.T425T	.	.	145	6	210	0	.	227
DCLK1	9201	mdanderson.org	37	13	36402426	36402426	+	Silent	SNP	A	A	G	rs2296645	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DCLK1	NM_004734	exon9	c.T1248C	p.Y416Y	.	.	18	7	25	1	A|0.650;G|0.350	826
DCTN5	84516	hgsc.bcm.edu;bcgsc.ca	37	16	23654296	23654296	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DCTN5	NM_001199011	exon2	c.T69C	p.S23S	.	.	64	4	73	0	.	226
DEFB126	81623	hgsc.bcm.edu;bcgsc.ca	37	20	126206	126206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DEFB126	NM_030931	exon2	c.T209C	p.V70A	.	.	134	6	109	0	.	90
DES	1674	mdanderson.org	37	2	220283661	220283661	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DES	NM_001927	exon1	c.G477A	p.L159L	.	.	16	3	37	0	.	514
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24749890	24749890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DFNA5	NM_001127453	exon6	c.C815G	p.A272G	.	.	67	13	59	0	.	91
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54570765	54570765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DHX29	NM_019030	exon15	c.A2501G	p.Q834R	.	.	79	16	109	0	.	229
DHX9	1660	hgsc.bcm.edu	37	1	182822524	182822524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DHX9	NM_001357	exon5	c.T448C	p.S150P	.	.	90	4	83	0	.	92
DIAPH1	1729	bcgsc.ca	37	5	140953566	140953566	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DIAPH1	NM_005219	exon16	c.T1851A	p.P617P	.	.	48	5	33	0	.	91
DLD	1738	hgsc.bcm.edu;bcgsc.ca	37	7	107533711	107533711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DLD	NM_000108	exon2	c.G106A	p.A36T	.	.	65	4	78	0	.	226
DNAH1	25981	hgsc.bcm.edu	37	3	52395766	52395766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DNAH1	NM_015512	exon30	c.A4964G	p.K1655R	.	.	173	7	173	0	.	67
DNAH3	55567	hgsc.bcm.edu	37	16	21011556	21011556	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DNAH3	NM_017539	exon43	c.G6411A	p.V2137V	.	.	92	4	122	0	.	167
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11757692	11757692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DNAH9	NM_001372	exon50	c.G9880A	p.A3294T	.	.	115	44	113	0	.	168
DND1	373863	hgsc.bcm.edu	37	5	140052948	140052948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DND1	NM_194249	exon2	c.A50G	p.E17G	.	.	103	5	91	0	.	90
DOCK7	85440	bcgsc.ca	37	1	62923219	62923219	+	Missense_Mutation	SNP	T	T	G	rs200939372		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DOCK7	NM_001271999	exon48	c.A6337C	p.T2113P	.	.	96	16	169	5	.	92
DYNC1H1	1778	hgsc.bcm.edu	37	14	102515840	102515840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DYNC1H1	NM_001376	exon75	c.T13436C	p.V4479A	.	.	116	5	138	0	.	98
DYNC2H1	79659	bcgsc.ca	37	11	103049924	103049924	+	Silent	SNP	A	A	C	rs201879422	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DYNC2H1	NM_001377	exon39	c.A6309C	p.S2103S	.	.	65	21	86	3	A|0.986;C|0.014	68
EHMT2	10919	hgsc.bcm.edu	37	6	31847967	31847967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EHMT2	NM_006709	exon28	c.A3527G	p.K1176R	.	.	119	5	107	0	.	91
EIF4ENIF1	56478	hgsc.bcm.edu	37	22	31846327	31846327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EIF4ENIF1	NM_019843	exon11	c.T1532C	p.L511S	.	.	83	4	99	0	.	91
ENTPD5	957	hgsc.bcm.edu	37	14	74443063	74443063	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ENTPD5	NM_001249	exon9	c.A606G	p.G202G	.	.	103	5	122	0	.	91
EPAS1	2034	hgsc.bcm.edu	37	2	46611704	46611704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EPAS1	NM_001430	exon16	c.A2518G	p.T840A	.	.	96	4	100	0	.	227
EPG5	57724	hgsc.bcm.edu;bcgsc.ca	37	18	43496028	43496028	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EPG5	NM_020964	exon19	c.T3528C	p.A1176A	.	.	55	4	82	0	.	580
ERBB4	2066	hgsc.bcm.edu	37	2	212295715	212295715	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ERBB4	NM_001042599	exon21	c.A2598G	p.R866R	.	.	115	5	134	0	.	1461
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	50690818	50690818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ERCC6	NM_000124	exon10	c.G2084T	p.C695F	.	.	77	6	95	0	.	1153
ETF1	2107	hgsc.bcm.edu	37	5	137844500	137844500	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ETF1	NM_004730	exon10	c.A1089G	p.G363G	.	.	69	4	85	0	.	229
EVI5	7813	hgsc.bcm.edu	37	1	93167745	93167745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EVI5	NM_005665	exon5	c.G724A	p.G242S	.	.	91	4	151	0	.	136
EXD1	161829	hgsc.bcm.edu	37	15	41483691	41483691	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EXD1	NM_152596	exon8	c.A639G	p.Q213Q	.	.	83	4	57	0	.	91
EZR	7430	hgsc.bcm.edu;bcgsc.ca	37	6	159190397	159190397	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EZR	NM_003379	exon11	c.G1305A	p.R435R	.	.	34	4	45	0	.	70
FAM162A	26355	ucsc.edu	37	3	122126237	122126237	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FAM162A	NM_014367	exon4	c.372+1G>T	.	.	.	195	1	182	0	.	159
FAM171B	165215	hgsc.bcm.edu	37	2	187559053	187559053	+	Silent	SNP	A	A	G	rs2370706	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FAM171B	NM_177454	exon1	c.A153G	p.Q51Q	.	.	72	7	87	0	A|0.417;G|0.583	141
FAM208B	54906	broad.mit.edu	37	10	5791141	5791141	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_017782	exon15	c.C5757T	p.H1919H	.	.	77	3	63	0	.	.
FAM214A	56204	hgsc.bcm.edu	37	15	52874394	52874394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_019600	exon13	c.A3188G	p.Y1063C	.	.	99	4	105	0	.	.
FAM219B	57184	hgsc.bcm.edu	37	15	75197055	75197055	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_020447	exon5	c.381-2A>G	.	.	.	68	4	87	0	.	.
FAM22F	54754	hgsc.bcm.edu	37	9	97080944	97080944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FAM22F	NM_017561	exon7	c.C2074G	p.P692A	.	.	326	17	352	0	.	68
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001145402	exon9	c.A2337C	p.P779P	.	.	48	14	45	0	.	.
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	126238284	126238284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FAT4	NM_024582	exon1	c.G718T	p.V240L	.	.	98	8	138	0	.	108
FBXO3	26273	hgsc.bcm.edu;bcgsc.ca	37	11	33790501	33790501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FBXO3	NM_012175	exon3	c.A254G	p.D85G	.	.	64	4	110	0	.	227
FBXO9	26268	bcgsc.ca	37	6	52962617	52962617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FBXO9	NM_012347	exon12	c.A1333G	p.R445G	.	.	59	4	42	0	.	227
FCGBP	8857	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40368846	40368846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FCGBP	NM_003890	exon28	c.T12502G	p.S4168A	.	.	120	11	139	0	.	98
FCHSD2	9873	hgsc.bcm.edu	37	11	72551974	72551974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FCHSD2	NM_014824	exon19	c.T2087C	p.F696S	.	.	67	4	74	0	.	228
FERMT1	55612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6057869	6057869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FERMT1	NM_017671	exon15	c.A1985T	p.E662V	.	.	137	23	167	0	.	495
FGL2	10875	hgsc.bcm.edu	37	7	76826056	76826056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FGL2	NM_006682	exon2	c.A860G	p.D287G	.	.	125	5	192	0	.	92
FILIP1	27145	hgsc.bcm.edu	37	6	76022124	76022124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FILIP1	NM_015687	exon5	c.A3424G	p.T1142A	.	.	47	5	76	0	.	94
FIP1L1	81608	hgsc.bcm.edu	37	4	54325504	54325504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FIP1L1	NM_030917	exon18	c.A1673G	p.D558G	.	.	83	4	85	0	.	1083
FLG2	388698	broad.mit.edu	37	1	152324512	152324512	+	Missense_Mutation	SNP	T	T	C	rs150834303	alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLG2	NM_001014342	exon3	c.A5750G	p.K1917R	.	.	825	10	402	1	T|1.000;A|0.000	151
FLG2	388698	broad.mit.edu	37	1	152327955	152327955	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLG2	NM_001014342	exon3	c.C2307T	p.S769S	.	.	308	8	149	0	.	151
FLG2	388698	broad.mit.edu;bcgsc.ca	37	1	152327807	152327807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLG2	NM_001014342	exon3	c.G2455A	p.G819S	.	.	319	15	120	1	.	151
FLT1	2321	hgsc.bcm.edu	37	13	28942736	28942736	+	Silent	SNP	C	C	T	rs200627038		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLT1	NM_001160030	exon15	c.G2181A	p.S727S	.	.	96	24	91	0	.	1406
FLT1	2321	hgsc.bcm.edu	37	13	28942739	28942739	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLT1	NM_001160030	exon15	c.A2178G	p.S726S	.	.	101	31	94	0	.	1406
FOCAD	54914	bcgsc.ca	37	9	20823056	20823056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_017794	exon17	c.A1862G	p.D621G	.	.	104	4	130	0	.	.
FPGT	8790	hgsc.bcm.edu	37	1	74670761	74670761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FPGT	NM_003838	exon4	c.A1030G	p.T344A	.	.	87	4	103	0	.	91
FRAS1	80144	hgsc.bcm.edu	37	4	79353651	79353651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FRAS1	NM_001166133	exon38	c.T5110C	p.S1704P	.	.	118	5	145	0	.	68
FTCD	10841	hgsc.bcm.edu;broad.mit.edu	37	21	47575400	47575401	+	In_Frame_Ins	INS	-	-	CCATAA	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FTCD	NM_206965	exon1	c.38_39insTTATGG	p.E13delinsVME	.	.	82	11	100	0	.	92
GAK	2580	hgsc.bcm.edu	37	4	864601	864601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GAK	NM_005255	exon19	c.A2146G	p.S716G	.	.	92	4	112	0	.	568
GAL	51083	hgsc.bcm.edu;bcgsc.ca	37	11	68453108	68453108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GAL	NM_015973	exon3	c.T128C	p.L43P	.	.	60	4	65	0	.	90
GALNTL6	442117	hgsc.bcm.edu	37	4	173930373	173930373	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GALNTL6	NM_001034845	exon11	c.A1416G	p.G472G	.	.	92	5	136	0	.	137
GARNL3	84253	bcgsc.ca	37	9	130098478	130098478	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GARNL3	NM_032293	exon11	c.T945C	p.P315P	.	.	70	4	81	0	.	516
GATM	2628	hgsc.bcm.edu	37	15	45658283	45658283	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GATM	NM_001482	exon6	c.T939C	p.P313P	.	.	84	4	117	0	.	90
GCN1L1	10985	hgsc.bcm.edu	37	12	120587839	120587839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GCN1L1	NM_006836	exon35	c.T4318C	p.F1440L	.	.	76	4	94	0	.	94
GEMIN6	79833	bcgsc.ca	37	2	39009010	39009010	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GEMIN6	NM_024775	exon3	c.A480G	p.E160E	.	.	108	4	87	0	.	226
GLCE	26035	hgsc.bcm.edu;bcgsc.ca	37	15	69553621	69553621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GLCE	NM_015554	exon4	c.T782C	p.V261A	.	.	90	4	125	0	.	92
GLG1	2734	hgsc.bcm.edu	37	16	74528659	74528659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GLG1	NM_001145667	exon6	c.A1049G	p.K350R	.	.	91	4	76	0	.	136
GMEB2	26205	broad.mit.edu	37	20	62250655	62250655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GMEB2	NM_012384	exon2	c.G96T	p.K32N	.	.	51	5	75	0	.	90
GNAI3	2773	hgsc.bcm.edu	37	1	110134757	110134757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GNAI3	NM_006496	exon8	c.T967C	p.F323L	.	.	119	5	171	0	.	228
GNB1	2782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	1720616	1720617	+	Nonsense_Mutation	INS	-	-	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GNB1	NM_002074	exon10	c.792_793insA	p.Y264_S265delinsX	.	.	151	61	196	0	.	227
GNPDA2	132789	hgsc.bcm.edu	37	4	44705132	44705132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GNPDA2	NM_138335	exon7	c.T797C	p.V266A	.	.	61	4	74	0	.	91
GPR179	440435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36499312	36499312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPR179	NM_001004334	exon1	c.T361C	p.S121P	.	.	136	15	170	1	.	93
GPSM1	26086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	139244074	139244074	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPSM1	NM_001145638	exon11	c.G1314A	p.W438X	.	.	86	30	115	0	.	90
GRIN2C	2905	bcgsc.ca;mdanderson.org	37	17	72848172	72848172	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GRIN2C	NM_000835	exon3	c.T978C	p.P326P	.	.	17	3	37	0	.	228
GRSF1	2926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71691022	71691022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_002092	exon8	c.T1384C	p.S462P	.	.	81	5	154	0	.	.
GTF2A1	2957	hgsc.bcm.edu	37	14	81670411	81670411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF2A1	NM_015859	exon3	c.A170G	p.D57G	.	.	114	4	178	0	.	153
GTF2B	2959	hgsc.bcm.edu	37	1	89322918	89322918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF2B	NM_001514	exon6	c.A788G	p.Q263R	.	.	79	4	169	0	.	154
GTF2H1	2965	hgsc.bcm.edu	37	11	18373439	18373439	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF2H1	NM_001142307	exon11	c.A1065G	p.Q355Q	.	.	78	4	89	0	.	684
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197634689	197634689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF3C3	NM_012086	exon16	c.C2335T	p.H779Y	.	.	90	17	99	0	.	97
GUCY2F	2986	hgsc.bcm.edu	37	X	108619161	108619161	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GUCY2F	NM_001522	exon19	c.A3294G	p.K1098K	.	.	113	5	155	0	.	540
H1FX	8971	hgsc.bcm.edu	37	3	129034735	129034735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	H1FX	NM_006026	exon1	c.A11G	p.E4G	.	.	55	5	77	0	.	90
HAND2	9464	broad.mit.edu	37	4	174450073	174450073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HAND2	NM_021973	exon1	c.G368A	p.R123H	.	.	200	5	257	0	.	91
HCFC1	3054	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153220034	153220034	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HCFC1	NM_005334	exon17	c.G3816A	p.V1272V	.	.	104	40	165	1	.	132
HCFC1	3054	hgsc.bcm.edu	37	X	153225829	153225829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HCFC1	NM_005334	exon7	c.T941C	p.L314P	.	.	124	5	177	0	.	132
HCN4	10021	hgsc.bcm.edu	37	15	73615722	73615722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HCN4	NM_005477	exon8	c.A2712G	p.I904M	.	.	94	4	118	0	.	96
HECTD4	283450	hgsc.bcm.edu	37	12	112667541	112667541	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001109662	exon41	c.A6078G	p.G2026G	.	.	88	4	112	0	.	.
HHIPL2	79802	hgsc.bcm.edu;bcgsc.ca	37	1	222712068	222712068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HHIPL2	NM_024746	exon5	c.T1499C	p.V500A	.	.	117	5	150	0	.	69
HIST2H2BA	337875	broad.mit.edu;bcgsc.ca	37	1	120906259	120906259	+	RNA	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	.	.	.	.	.	.	223	67	240	0	.	.
HMGN5	79366	hgsc.bcm.edu;bcgsc.ca	37	X	80371833	80371833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HMGN5	NM_030763	exon6	c.A137G	p.K46R	.	.	81	4	102	0	.	130
HNRNPC	3183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21699222	21699222	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HNRNPC	NM_001077443	exon3	c.T251G	p.L84R	.	.	60	14	64	0	.	90
HOXC13	3229	hgsc.bcm.edu	37	12	54338925	54338925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HOXC13	NM_017410	exon2	c.T878C	p.I293T	.	.	97	4	125	0	.	683
HRC	3270	hgsc.bcm.edu	37	19	49657889	49657889	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HRC	NM_002152	exon1	c.A606G	p.E202E	.	.	178	10	137	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HRC	NM_002152	exon1	c.A579G	p.E193E	.	.	175	15	126	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657920	49657920	+	Missense_Mutation	SNP	C	C	T	rs200730671		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HRC	NM_002152	exon1	c.G575A	p.G192E	.	.	177	13	130	0	.	91
HS3ST6	64711	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1961778	1961778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001009606	exon2	c.A749G	p.N250S	.	.	116	27	172	1	.	.
HSH2D	84941	hgsc.bcm.edu	37	19	16268213	16268213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_032855	exon9	c.A667G	p.S223G	.	.	163	7	93	0	.	.
HSPA5	3309	hgsc.bcm.edu;bcgsc.ca	37	9	128000515	128000515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HSPA5	NM_005347	exon7	c.T1307C	p.L436P	.	.	69	4	77	0	.	230
HSPG2	3339	hgsc.bcm.edu	37	1	22202397	22202397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HSPG2	NM_005529	exon24	c.A3142G	p.S1048G	.	.	97	4	116	0	.	141
IFNA7	3444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21201807	21201807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFNA7	NM_021057	exon1	c.G358A	p.E120K	.	.	370	107	477	0	.	90
IFNGR2	3460	hgsc.bcm.edu	37	21	34805151	34805151	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFNGR2	NM_005534	exon6	c.A852G	p.P284P	.	.	97	5	99	0	.	186
IFNW1	3467	hgsc.bcm.edu	37	9	21141108	21141108	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFNW1	NM_002177	exon1	c.G462A	p.L154L	.	.	80	4	77	0	.	90
IFT52	51098	hgsc.bcm.edu	37	20	42252541	42252541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFT52	NM_016004	exon10	c.A779G	p.Y260C	.	.	94	4	126	0	.	92
IGSF9B	22997	hgsc.bcm.edu	37	11	133815970	133815970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IGSF9B	NM_014987	exon2	c.A248G	p.D83G	.	.	95	4	128	0	.	68
IL10RB	3588	hgsc.bcm.edu	37	21	34660496	34660496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IL10RB	NM_000628	exon6	c.T734C	p.L245P	.	.	93	4	99	0	.	90
IL9R	3581	bcgsc.ca	37	X	155234177	155234177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IL9R	NM_176786	exon6	c.A631G	p.T211A	.	.	209	6	379	1	.	40
INPP5A	3632	hgsc.bcm.edu	37	10	134563079	134563079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	INPP5A	NM_005539	exon10	c.T791C	p.V264A	.	.	97	4	81	0	.	229
IQSEC2	23096	hgsc.bcm.edu	37	X	53310699	53310699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IQSEC2	NM_015075	exon1	c.A5G	p.E2G	.	.	113	6	211	0	.	178
IST1	9798	broad.mit.edu	37	16	71950405	71950405	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001270976	exon4	c.T168C	p.Y56Y	.	.	215	5	244	0	.	.
ITGA2	3673	hgsc.bcm.edu	37	5	52371092	52371092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ITGA2	NM_002203	exon23	c.T2783C	p.L928P	.	.	99	4	89	0	.	226
ITGA4	3676	hgsc.bcm.edu	37	2	182358065	182358065	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ITGA4	NM_000885	exon11	c.A1167G	p.G389G	.	.	86	4	76	0	.	230
ITGA7	3679	hgsc.bcm.edu;bcgsc.ca	37	12	56091488	56091488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ITGA7	NM_001144996	exon9	c.T1412C	p.V471A	.	.	52	4	86	0	.	229
KANSL3	55683	hgsc.bcm.edu	37	2	97268497	97268497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001115016	exon18	c.C2252T	p.A751V	.	.	89	4	113	0	.	.
KAT6B	23522	hgsc.bcm.edu	37	10	76602779	76602779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_012330	exon3	c.T164C	p.V55A	.	.	101	5	101	0	.	.
KCNMA1	3778	hgsc.bcm.edu;bcgsc.ca	37	10	78832856	78832856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCNMA1	NM_002247	exon14	c.A1748G	p.K583R	.	.	99	5	124	0	.	93
KCNT2	343450	hgsc.bcm.edu;bcgsc.ca	37	1	196295981	196295981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCNT2	NM_198503	exon19	c.T2142C	p.Y714Y	.	.	78	4	89	0	.	159
KCTD17	79734	hgsc.bcm.edu;bcgsc.ca	37	22	37453518	37453518	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCTD17	NM_024681	exon4	c.C492T	p.G164G	.	.	46	4	75	0	.	68
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34818735	34818735	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA0355	NM_014686	exon5	c.C906T	p.F302F	.	.	88	13	99	0	.	91
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	93807341	93807341	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA0825	NM_001145678	exon9	c.G1551T	p.V517V	.	.	173	13	150	0	.	91
KIAA1407	57577	hgsc.bcm.edu	37	3	113684024	113684024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA1407	NM_020817	exon17	c.A2789G	p.K930R	.	.	86	4	116	0	.	92
KIAA1586	57691	broad.mit.edu	37	6	56911554	56911554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA1586	NM_020931	exon1	c.A1G	p.M1V	.	.	432	9	424	0	.	44
KIAA1614	57710	hgsc.bcm.edu	37	1	180905383	180905383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA1614	NM_020950	exon5	c.T2338C	p.S780P	.	.	97	4	97	0	.	26
KIAA1731	85459	hgsc.bcm.edu;bcgsc.ca	37	11	93455128	93455128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA1731	NM_033395	exon20	c.A5859G	p.T1953T	.	.	66	4	103	0	.	22
KIAA2026	158358	hgsc.bcm.edu;bcgsc.ca	37	9	5920644	5920644	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA2026	NM_001017969	exon8	c.T5352C	p.T1784T	.	.	89	5	140	0	.	92
KIRREL3	84623	hgsc.bcm.edu	37	11	126326264	126326264	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIRREL3	NM_032531	exon7	c.C828T	p.N276N	.	.	96	4	154	0	.	25
KLHDC2	23588	hgsc.bcm.edu	37	14	50249607	50249607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHDC2	NM_014315	exon13	c.T1157C	p.L386P	.	.	90	4	112	0	.	91
KLHDC7B	113730	hgsc.bcm.edu	37	22	50987911	50987911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHDC7B	NM_138433	exon1	c.T1316C	p.F439S	.	.	73	4	97	0	.	90
KLHL20	27252	hgsc.bcm.edu	37	1	173720986	173720986	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHL20	NM_014458	exon4	c.T681C	p.S227S	.	.	110	5	92	0	.	187
KLHL28	54813	hgsc.bcm.edu;bcgsc.ca	37	14	45414969	45414969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHL28	NM_017658	exon2	c.A163G	p.S55G	.	.	85	5	115	0	.	91
KLK10	5655	hgsc.bcm.edu	37	19	51518060	51518060	+	Missense_Mutation	SNP	T	T	C	rs61752564	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLK10	NM_145888	exon6	c.A827G	p.N276S	.	.	113	48	132	0	T|0.995;C|0.005	650
KPRP	448834	hgsc.bcm.edu	37	1	152733725	152733725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	KPRP,NS,carcinoma,0	KPRP	NM_001025231	exon2	c.G1661C	p.R554P	.	.	259	11	129	0	.	95
KRT1	3848	hgsc.bcm.edu	37	12	53069235	53069235	+	Silent	SNP	G	G	A	rs11170232	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRT1	NM_006121	exon9	c.C1677T	p.Y559Y	.	.	12	5	16	0	G|0.500;A|0.500	92
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53039093	53039093	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRT2	NM_000423	exon9	c.C1630T	p.R544X	.	.	67	13	74	0	.	92
KRTAP5-1	387264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1606421	1606421	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRTAP5-1	NM_001005922	exon1	c.G59C	p.G20A	.	.	147	62	190	0	.	44
L2HGDH	79944	hgsc.bcm.edu	37	14	50769676	50769676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	L2HGDH	NM_024884	exon2	c.T200C	p.L67P	.	.	52	4	45	0	.	92
L3MBTL1	26013	hgsc.bcm.edu	37	20	42157387	42157387	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	L3MBTL1	NM_032107	exon8	c.885+2T>C	.	.	.	118	5	146	0	.	227
LAMA4	3910	bcgsc.ca	37	6	112466013	112466013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LAMA4	NM_001105206	exon19	c.A2476G	p.R826G	.	.	37	4	43	0	.	140
LCE4A	199834	hgsc.bcm.edu	37	1	152681696	152681696	+	Missense_Mutation	SNP	G	G	T	rs79268808		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LCE4A	NM_178356	exon1	c.G145T	p.G49C	.	.	285	24	103	0	.	90
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88459081	88459081	+	Missense_Mutation	SNP	C	C	T	rs121908335		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LDB3	NM_001171611	exon8	c.C1147T	p.R383C	.	.	104	19	72	0	.	92
LDOC1	23641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	140270987	140270987	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LDOC1	NM_012317	exon1	c.220delT	p.Y74fs	.	.	75	28	97	0	.	130
LENG9	94059	hgsc.bcm.edu	37	19	54973991	54973991	+	Missense_Mutation	SNP	T	T	G	rs115301361	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LENG9	NM_198988	exon1	c.A785C	p.E262A	.	.	97	9	87	0	T|0.984;G|0.016	68
LEPRE1	64175	hgsc.bcm.edu	37	1	43218242	43218242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LEPRE1	NM_001146289	exon9	c.A1439G	p.D480G	.	.	88	4	101	0	.	94
LGI4	163175	bcgsc.ca	37	19	35624616	35624616	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LGI4	NM_139284	exon3	c.C295T	p.L99L	.	.	46	4	43	0	.	91
LIG4	3981	bcgsc.ca	37	13	108863410	108863410	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LIG4	NM_206937	exon3	c.A207G	p.R69R	.	.	192	6	134	0	.	659
LILRB5	10990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54759311	54759311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LILRB5	NM_001081442	exon5	c.G790A	p.V264I	.	.	228	28	217	0	.	92
LMBR1	64327	hgsc.bcm.edu	37	7	156685632	156685632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LMBR1	NM_022458	exon1	c.G56T	p.R19L	.	.	18	4	46	0	.	90
LMTK3	114783	hgsc.bcm.edu	37	19	49003158	49003158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LMTK3	NM_001080434	exon12	c.T1255C	p.S419P	.	.	100	4	116	0	.	1357
LPCAT1	79888	hgsc.bcm.edu	37	5	1467007	1467007	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LPCAT1	NM_024830	exon14	c.1279-2A>G	.	.	.	98	4	107	0	.	92
LRBA	987	hgsc.bcm.edu;bcgsc.ca	37	4	151727552	151727552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRBA	NM_006726	exon33	c.A5389G	p.T1797A	.	.	70	4	97	0	.	157
LRRC17	10234	hgsc.bcm.edu	37	7	102575006	102575006	+	Missense_Mutation	SNP	G	G	A	rs80100722		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRRC17	NM_005824	exon2	c.G646A	p.E216K	.	.	32	5	43	0	.	91
LRRC24	441381	hgsc.bcm.edu	37	8	145748075	145748075	+	Silent	SNP	T	T	C	rs112652028	byfrequency;alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRRC24	NM_001024678	exon5	c.A1326G	p.G442G	.	.	153	8	64	0	T|0.986;G|0.014	90
LRRN3	54674	hgsc.bcm.edu	37	7	110764889	110764889	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRRN3	NM_018334	exon2	c.A2061G	p.G687G	.	.	22	4	14	0	.	154
LTF	4057	hgsc.bcm.edu	37	3	46501284	46501284	+	Silent	SNP	C	C	T	rs76787706		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LTF	NM_002343	exon2	c.G69A	p.R23R	.	.	145	2	181	0	.	703
MAGI3	260425	hgsc.bcm.edu	37	1	114196530	114196530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MAGI3	NM_152900	exon15	c.T2519C	p.V840A	.	.	86	5	89	0	.	524
MAP3K4	4216	hgsc.bcm.edu;bcgsc.ca	37	6	161455479	161455479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MAP3K4	NM_006724	exon2	c.A341G	p.K114R	.	.	67	4	104	0	.	548
MARCH6	10299	bcgsc.ca	37	5	10394253	10394253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MARCH6	NM_005885	exon8	c.A826G	p.R276G	.	.	177	6	184	1	.	501
MAZ	4150	hgsc.bcm.edu	37	16	29821438	29821438	+	Silent	SNP	G	G	A	rs199924629		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MAZ	NM_002383	exon5	c.G1320A	p.A440A	.	.	116	6	169	0	G|0.993;A|0.007	136
MBD5	55777	bcgsc.ca	37	2	149247930	149247930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MBD5	NM_018328	exon12	c.A4030G	p.S1344G	.	.	179	6	151	0	.	95
MCCC2	64087	hgsc.bcm.edu	37	5	70942047	70942047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MCCC2	NM_022132	exon13	c.T1159C	p.F387L	.	.	91	4	94	0	.	23
MCTP2	55784	hgsc.bcm.edu	37	15	94841577	94841577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MCTP2	NM_001159643	exon1	c.T83C	p.V28A	.	.	96	4	63	0	.	93
MDGA2	161357	hgsc.bcm.edu	37	14	47342700	47342700	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	MDGA2,NS,carcinoma,-2	MDGA2	NM_001113498	exon14	c.T2688C	p.P896P	.	.	66	3	76	0	.	95
MDM1	56890	hgsc.bcm.edu	37	12	68696473	68696473	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MDM1	NM_017440	exon12	c.A1899G	p.P633P	.	.	67	4	82	0	.	95
MDN1	23195	hgsc.bcm.edu	37	6	90440507	90440507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MDN1	NM_014611	exon35	c.A5078G	p.K1693R	.	.	86	4	142	0	.	100
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90461216	90461216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MDN1	NM_014611	exon23	c.A3161G	p.E1054G	.	.	109	5	164	0	.	100
MED13	9969	hgsc.bcm.edu	37	17	60050201	60050201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MED13	NM_005121	exon17	c.T3854C	p.L1285P	.	.	81	4	75	0	.	136
MED16	10025	hgsc.bcm.edu;bcgsc.ca	37	19	873468	873468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MED16	NM_005481	exon11	c.T1886C	p.L629P	.	.	88	5	66	0	.	186
MEPE	56955	hgsc.bcm.edu	37	4	88767270	88767270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MEPE	NM_020203	exon4	c.A1250G	p.N417S	.	.	94	4	113	0	.	93
METAP1	23173	hgsc.bcm.edu;bcgsc.ca	37	4	99960538	99960538	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_015143	exon5	c.T354C	p.S118S	.	.	75	4	72	0	.	.
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135170467	135170467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MGAT5	NM_002410	exon12	c.G1558A	p.E520K	.	.	231	28	250	0	.	93
MKLN1	4289	hgsc.bcm.edu	37	7	131084062	131084062	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MKLN1	NM_013255	exon6	c.A573G	p.E191E	.	.	100	4	120	0	.	135
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60766239	60766239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRC2	NM_006039	exon23	c.C3252A	p.S1084R	.	.	124	42	127	0	.	117
MRPS23	51649	hgsc.bcm.edu	37	17	55918549	55918549	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRPS23	NM_016070	exon3	c.T288C	p.C96C	.	.	64	4	72	0	.	90
MRPS31	10240	hgsc.bcm.edu;bcgsc.ca	37	13	41323319	41323319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRPS31	NM_005830	exon6	c.A913G	p.T305A	.	.	67	4	146	0	.	226
MTHFD1	4522	hgsc.bcm.edu	37	14	64898578	64898578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MTHFD1	NM_005956	exon15	c.A1493G	p.K498R	.	.	87	4	87	0	.	92
MTMR11	10903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149901687	149901687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MTMR11	NM_001145862	exon16	c.G1769A	p.R590H	.	.	130	20	83	0	.	90
MUC17	140453	hgsc.bcm.edu	37	7	100696684	100696684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MUC17	NM_001040105	exon11	c.A13330G	p.T4444A	.	.	105	6	106	0	.	95
MUC4	4585	broad.mit.edu	37	3	195506007	195506007	+	Silent	SNP	G	G	A	rs71635085		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MUC4	NM_018406	exon2	c.C12444T	p.T4148T	.	.	126	4	123	0	G|1.000;|0.000	90
MYO5B	4645	hgsc.bcm.edu	37	18	47402100	47402100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MYO5B	NM_001080467	exon26	c.T3494C	p.V1165A	.	.	98	4	155	0	.	72
MYO5C	55930	hgsc.bcm.edu	37	15	52548896	52548896	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MYO5C	NM_018728	exon11	c.C1335T	p.N445N	.	.	80	4	93	0	.	145
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3090725	3090725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MYOM1	NM_003803	exon27	c.G3940A	p.G1314R	.	.	165	30	216	0	.	94
NAAA	27163	hgsc.bcm.edu;bcgsc.ca	37	4	76861242	76861242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAAA	NM_014435	exon2	c.T283C	p.F95L	.	.	105	5	132	0	.	91
NAT10	55226	hgsc.bcm.edu	37	11	34158255	34158255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAT10	NM_024662	exon20	c.A2095G	p.N699D	.	.	117	5	142	0	.	92
NAV2	89797	hgsc.bcm.edu	37	11	20066858	20066858	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAV2	NM_001244963	exon15	c.C3613T	p.L1205L	.	.	98	4	139	0	.	96
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20066708	20066708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAV2	NM_001244963	exon15	c.C3463G	p.L1155V	.	.	54	12	78	0	.	96
NBPF9	400818	broad.mit.edu	37	1	144813815	144813815	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	.	.	.	.	.	.	58	9	25	0	.	.
NCKAP5L	57701	bcgsc.ca	37	12	50189080	50189080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NCKAP5L	NM_001037806	exon8	c.A2563G	p.S855G	.	.	53	4	50	0	.	68
NCOA3	8202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	46271003	46271003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NCOA3	NM_181659	exon17	c.A3127G	p.N1043D	.	.	40	4	72	0	.	229
NCOR1	9611	hgsc.bcm.edu	37	17	15973506	15973506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NCOR1	NM_001190440	exon30	c.T4534C	p.S1512P	.	.	101	5	116	0	.	229
NCOR2	9612	mdanderson.org	37	12	124887096	124887096	+	Silent	SNP	T	T	C	rs28690647		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NCOR2	NM_006312	exon16	c.A1494G	p.Q498Q	.	.	40	15	48	0	.	229
NDST4	64579	hgsc.bcm.edu;bcgsc.ca	37	4	115856381	115856381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NDST4	NM_022569	exon6	c.T1517C	p.L506P	.	.	82	4	140	0	.	94
NFASC	23114	hgsc.bcm.edu;bcgsc.ca	37	1	204978736	204978736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NFASC	NM_001005388	exon28	c.T3341C	p.L1114P	.	.	60	5	67	0	.	139
NFAT5	10725	hgsc.bcm.edu;bcgsc.ca	37	16	69718852	69718852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NFAT5	NM_138713	exon11	c.T1753C	p.S585P	.	.	103	5	103	0	.	90
NKIRAS1	28512	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	23942422	23942422	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NKIRAS1	NM_020345	exon4	c.G213T	p.L71L	.	.	156	19	133	1	.	659
NKIRAS1	28512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	23942421	23942421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NKIRAS1	NM_020345	exon4	c.C214G	p.P72A	.	.	155	19	130	0	.	659
NLRP3	114548	bcgsc.ca	37	1	247599330	247599330	+	Missense_Mutation	SNP	A	A	C	rs200101933		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NLRP3	NM_004895	exon6	c.A2557C	p.T853P	.	.	184	33	173	4	.	674
NMD3	51068	hgsc.bcm.edu	37	3	160968077	160968077	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NMD3	NM_015938	exon15	c.A1344G	p.E448E	.	.	69	4	69	0	.	91
NPHS1	4868	hgsc.bcm.edu	37	19	36330220	36330220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NPHS1	NM_004646	exon22	c.A3028G	p.R1010G	.	.	76	4	88	0	.	49
NPPB	4879	hgsc.bcm.edu	37	1	11917725	11917725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NPPB	NM_002521	exon3	c.T392C	p.L131P	.	.	95	4	129	0	.	92
NRD1	4898	hgsc.bcm.edu	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NRD1	NM_002525	exon2	c.A449T	p.E150V	.	.	201	23	254	0	T|0.024;A|0.976	90
NRIP1	8204	hgsc.bcm.edu	37	21	16339695	16339695	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NRIP1	NM_003489	exon4	c.A819G	p.E273E	.	.	99	4	105	0	.	186
NRXN3	9369	bcgsc.ca	37	14	79432551	79432551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NRXN3	NM_004796	exon9	c.A1460G	p.K487R	.	.	142	5	151	0	.	587
NTRK2	4915	hgsc.bcm.edu	37	9	87475992	87475992	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NTRK2	NM_001018065	exon13	c.A1434G	p.R478R	.	.	92	4	131	0	.	1404
NUP107	57122	broad.mit.edu	37	12	69084425	69084425	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NUP107	NM_020401	exon4	c.C202T	p.R68X	.	.	88	3	104	2	.	629
NVL	4931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224475603	224475603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NVL	NM_002533	exon14	c.C1668A	p.F556L	.	.	108	26	163	0	.	92
OGFRL1	79627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72003034	72003034	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OGFRL1	NM_024576	exon2	c.A273G	p.R91R	.	.	143	22	127	0	.	68
OLFM2	93145	hgsc.bcm.edu	37	19	9965137	9965137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OLFM2	NM_058164	exon6	c.G1090A	p.G364S	.	.	86	4	126	0	.	132
OR11G2	390439	hgsc.bcm.edu	37	14	20666184	20666184	+	Silent	SNP	C	C	G	rs74538160		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR11G2	NM_001005503	exon1	c.C690G	p.G230G	.	.	148	10	185	0	.	70
OR13F1	138805	broad.mit.edu	37	9	107266853	107266853	+	Missense_Mutation	SNP	T	T	C	rs200181030	alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR13F1	NM_001004485	exon1	c.T310C	p.S104P	.	.	96	5	133	0	T|0.999;G|0.001	115
OR14A16	284532	hgsc.bcm.edu	37	1	247978543	247978543	+	Silent	SNP	G	G	T	rs200138400		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR14A16	NM_001001966	exon1	c.C489A	p.S163S	.	.	90	6	55	0	.	46
OR1L6	392390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125512279	125512279	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR1L6	NM_001004453	exon1	c.C153T	p.Y51Y	.	.	228	45	311	0	.	68
OR4X1	390113	hgsc.bcm.edu	37	11	48285986	48285986	+	Missense_Mutation	SNP	T	T	A	rs76457745		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR4X1	NM_001004726	exon1	c.T574A	p.F192I	.	.	176	10	189	0	C|0.000;T|1.000	71
OR5A1	219982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59211305	59211305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR5A1	NM_001004728	exon1	c.G664T	p.G222C	.	.	135	24	201	0	.	69
OSR1	130497	hgsc.bcm.edu;bcgsc.ca	37	2	19552914	19552914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OSR1	NM_145260	exon2	c.T653C	p.L218P	.	.	59	4	78	0	.	257
OTOA	146183	hgsc.bcm.edu	37	16	21716543	21716543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OTOA	NM_144672	exon11	c.T1034C	p.V345A	.	.	103	5	103	0	.	92
PALMD	54873	bcgsc.ca	37	1	100152488	100152488	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PALMD	NM_017734	exon5	c.T369C	p.S123S	.	.	67	4	105	0	.	71
PARP3	10039	hgsc.bcm.edu	37	3	51978115	51978115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PARP3	NM_001003931	exon3	c.A215G	p.D72G	.	.	97	6	107	0	.	660
PATL1	219988	hgsc.bcm.edu	37	11	59415324	59415324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PATL1	NM_152716	exon15	c.G1796A	p.R599H	.	.	76	4	96	0	.	1
PCDHAC2	56134	hgsc.bcm.edu	37	5	140389506	140389506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHAC2	NM_018899	exon4	c.A3008G	p.D1003G	.	.	91	4	73	0	.	26
PCDHB15	56121	hgsc.bcm.edu	37	5	140626124	140626124	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHB15	NM_018935	exon1	c.A978G	p.G326G	.	.	207	9	210	0	.	156
PCDHGA1	56114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140712536	140712536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHGA1	NM_018912	exon1	c.A2285G	p.D762G	.	.	262	53	275	2	.	137
PCDHGB3	56102	hgsc.bcm.edu	37	5	140750296	140750296	+	Missense_Mutation	SNP	A	A	G	rs73265845	alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_018924	exon1	c.A335G	p.K112R	.	.	68	4	66	0	A|0.993;T|0.007	.
PCDHGB3	56102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140750845	140750845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_018924	exon1	c.A884G	p.D295G	.	.	98	32	85	0	.	.
PCGF5	84333	hgsc.bcm.edu	37	10	93021180	93021180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCGF5	NM_001256549	exon7	c.A572G	p.E191G	.	.	82	4	101	0	.	226
PCIF1	63935	hgsc.bcm.edu	37	20	44574501	44574501	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCIF1	NM_022104	exon12	c.C1320T	p.S440S	.	.	90	4	112	0	.	91
PCNT	5116	hgsc.bcm.edu	37	21	47817283	47817283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCNT	NM_006031	exon22	c.T4321G	p.S1441A	.	.	78	4	95	0	.	141
PCSK5	5125	hgsc.bcm.edu	37	9	78790032	78790032	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCSK5	NM_006200	exon14	c.A1887G	p.T629T	.	.	83	4	105	0	.	93
PDE3B	5140	hgsc.bcm.edu	37	11	14666012	14666012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE3B	NM_000922	exon1	c.T391C	p.F131L	.	.	100	4	139	0	.	90
PDE4A	5141	hgsc.bcm.edu;bcgsc.ca	37	19	10572599	10572599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE4A	NM_001111307	exon13	c.T1667C	p.L556P	.	.	30	4	50	0	.	523
PDE4D	5144	hgsc.bcm.edu	37	5	58270500	58270500	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE4D	NM_001104631	exon15	c.T2421C	p.P807P	.	.	131	6	122	0	.	226
PDE6B	5158	broad.mit.edu	37	4	650783	650783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE6B	NM_001145291	exon9	c.T1228C	p.F410L	.	.	114	4	172	0	.	90
PDGFC	56034	hgsc.bcm.edu	37	4	157693868	157693868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDGFC	NM_016205	exon4	c.A673G	p.K225E	.	.	68	4	95	0	.	525
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153317700	153317700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PGLYRP4	NM_020393	exon4	c.C298T	p.R100W	.	.	107	10	65	0	.	94
PGR	5241	hgsc.bcm.edu	37	11	100933405	100933405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PGR	NM_000926	exon4	c.T1985C	p.V662A	.	.	97	4	86	0	.	652
PHKA2	5256	bcgsc.ca	37	X	19001998	19001998	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PHKA2	NM_000292	exon1	c.T53G	p.V18G	.	.	155	29	214	3	.	131
PKHD1	5314	hgsc.bcm.edu	37	6	51524434	51524434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PKHD1	NM_138694	exon61	c.C10490T	p.A3497V	.	.	84	4	97	0	.	603
PLEKHA1	59338	hgsc.bcm.edu	37	10	124189346	124189346	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PLEKHA1	NM_001001974	exon12	c.A1107G	p.K369K	.	.	78	4	73	0	.	226
PLEKHG5	57449	hgsc.bcm.edu	37	1	6529206	6529206	+	Silent	SNP	C	C	T	rs148868013	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PLEKHG5	NM_001265592	exon20	c.G2382A	p.E794E	.	.	52	10	78	0	C|0.999;T|0.001	652
PLEKHM2	23207	hgsc.bcm.edu	37	1	16054156	16054156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PLEKHM2	NM_015164	exon9	c.A1589G	p.Q530R	.	.	99	4	175	0	.	23
PLXNA2	5362	hgsc.bcm.edu	37	1	208390746	208390746	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PLXNA2	NM_025179	exon2	c.C522T	p.R174R	.	.	94	4	72	0	.	92
POLR2A	5430	hgsc.bcm.edu	37	17	7416450	7416450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	POLR2A	NM_000937	exon29	c.T4867C	p.S1623P	.	.	190	9	213	0	.	91
POLR3A	11128	hgsc.bcm.edu;bcgsc.ca	37	10	79752965	79752965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	POLR3A	NM_007055	exon20	c.A2777G	p.D926G	.	.	57	4	76	0	.	90
PPEF2	5470	hgsc.bcm.edu	37	4	76793207	76793207	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PPEF2	NM_006239	exon13	c.G1620A	p.K540K	.	.	99	4	126	0	.	228
PPEF2	5470	hgsc.bcm.edu	37	4	76797570	76797570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PPEF2	NM_006239	exon11	c.A1190G	p.E397G	.	.	90	4	74	0	.	228
PPP1R18	170954	hgsc.bcm.edu	37	6	30653159	30653159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001134870	exon2	c.A637G	p.S213G	.	.	115	5	114	0	.	.
PSMB1	5689	hgsc.bcm.edu	37	6	170844336	170844336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PSMB1	NM_002793	exon6	c.A698G	p.E233G	.	.	147	6	252	0	.	91
PSMD12	5718	hgsc.bcm.edu	37	17	65338310	65338310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PSMD12	NM_002816	exon10	c.T1153C	p.S385P	.	.	80	4	90	0	.	90
PSMD3	5709	hgsc.bcm.edu	37	17	38142922	38142922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PSMD3	NM_002809	exon3	c.T506C	p.L169P	.	.	98	4	124	0	.	92
PTPRO	5800	hgsc.bcm.edu	37	12	15668472	15668472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PTPRO	NM_002848	exon8	c.G1505A	p.G502D	.	.	95	4	151	0	.	271
PTPRZ1	5803	hgsc.bcm.edu	37	7	121636505	121636505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PTPRZ1	NM_001206838	exon9	c.A998G	p.E333G	.	.	93	4	99	0	.	699
PXDNL	137902	hgsc.bcm.edu	37	8	52287209	52287209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PXDNL	NM_144651	exon18	c.A3640G	p.T1214A	.	.	56	4	52	0	.	70
PYGO1	26108	bcgsc.ca	37	15	55838749	55838749	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PYGO1	NM_015617	exon3	c.A732G	p.G244G	.	.	185	6	152	0	.	228
RAB14	51552	hgsc.bcm.edu;bcgsc.ca	37	9	123952841	123952841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RAB14	NM_016322	exon4	c.A275G	p.D92G	.	.	70	4	72	0	.	227
RABEP1	9135	hgsc.bcm.edu;bcgsc.ca	37	17	5235279	5235279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RABEP1	NM_004703	exon3	c.G199A	p.A67T	.	.	41	4	38	0	.	659
RAE1	8480	hgsc.bcm.edu	37	20	55949682	55949682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RAE1	NM_003610	exon11	c.A845G	p.H282R	.	.	79	4	80	0	.	226
RALGPS2	55103	hgsc.bcm.edu	37	1	178854228	178854228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RALGPS2	NM_152663	exon12	c.T922C	p.S308P	.	.	97	4	115	0	.	226
RASA1	5921	hgsc.bcm.edu;bcgsc.ca	37	5	86659274	86659274	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RASA1	NM_002890	exon11	c.T1563C	p.D521D	.	.	69	4	83	0	.	661
RASA2	5922	hgsc.bcm.edu	37	3	141305546	141305546	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RASA2	NM_006506	exon19	c.C1885T	p.R629X	.	.	150	7	149	0	.	661
RBM41	55285	hgsc.bcm.edu	37	X	106358785	106358785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RBM41	NM_001171080	exon4	c.A320G	p.K107R	.	.	99	4	127	0	.	131
RECK	8434	hgsc.bcm.edu	37	9	36052297	36052297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RECK	NM_021111	exon2	c.A136G	p.M46V	.	.	97	4	133	0	.	93
RGPD4	285190	broad.mit.edu	37	2	108499130	108499130	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RGPD4	NM_182588	exon22	c.T5067C	p.L1689L	.	.	847	8	871	0	.	2
RIMKLA	284716	hgsc.bcm.edu;bcgsc.ca	37	1	42865162	42865162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RIMKLA	NM_173642	exon2	c.A251G	p.D84G	.	.	123	5	113	0	.	90
RIOK1	83732	hgsc.bcm.edu	37	6	7405539	7405539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RIOK1	NM_031480	exon12	c.T1154C	p.V385A	.	.	100	4	93	0	.	336
RNF213	57674	hgsc.bcm.edu	37	17	78280933	78280933	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RNF213	NM_001256071	exon13	c.T2433C	p.V811V	.	.	121	5	93	0	.	577
RNF213	57674	hgsc.bcm.edu;bcgsc.ca	37	17	78346832	78346832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RNF213	NM_001256071	exon49	c.T12809C	p.V4270A	.	.	95	6	135	0	.	577
ROBO3	64221	hgsc.bcm.edu	37	11	124750459	124750459	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ROBO3	NM_022370	exon27	c.T4104C	p.S1368S	.	.	59	8	78	0	.	113
RPTN	126638	broad.mit.edu	37	1	152127267	152127267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RPTN	NM_001122965	exon3	c.A2308G	p.R770G	.	.	1098	8	540	1	.	68
RRM1	6240	hgsc.bcm.edu	37	11	4127341	4127341	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RRM1	NM_001033	exon3	c.T174C	p.T58T	.	.	65	4	71	0	.	227
RTL1	388015	hgsc.bcm.edu	37	14	101351059	101351059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RTL1	NM_001134888	exon1	c.A67G	p.M23V	.	.	72	4	87	0	.	46
SAMD4B	55095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39868421	39868421	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SAMD4B	NM_018028	exon10	c.C1401G	p.A467A	.	.	78	12	88	0	.	90
SBF2	81846	hgsc.bcm.edu	37	11	9871706	9871706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SBF2	NM_030962	exon22	c.A2670G	p.R890R	.	.	99	4	97	0	.	93
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1112458	1112458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_014963	exon21	c.C2458T	p.R820C	.	.	49	15	104	0	.	.
SCN11A	11280	bcgsc.ca	37	3	38991660	38991660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SCN11A	NM_014139	exon1	c.T194C	p.L65P	.	.	221	7	224	0	.	99
SCNN1G	6340	hgsc.bcm.edu	37	16	23223435	23223435	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SCNN1G	NM_001039	exon8	c.A1257G	p.A419A	.	.	68	4	77	0	.	158
SDCCAG8	10806	hgsc.bcm.edu	37	1	243652338	243652338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SDCCAG8	NM_006642	exon17	c.A2008G	p.S670G	.	.	122	5	105	0	.	90
SDR9C7	121214	hgsc.bcm.edu	37	12	57327766	57327766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SDR9C7	NM_148897	exon1	c.A280G	p.R94G	.	.	50	5	51	0	.	90
SEMA4D	10507	hgsc.bcm.edu	37	9	92020314	92020314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA4D	NM_006378	exon5	c.A58G	p.T20A	.	.	76	4	88	0	.	92
SEMA4F	10505	hgsc.bcm.edu	37	2	74883799	74883799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA4F	NM_001271662	exon2	c.A284G	p.E95G	.	.	88	4	109	0	.	93
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48056059	48056059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA6D	NM_153617	exon10	c.C760T	p.R254C	.	.	116	37	125	0	.	138
SEMA7A	8482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74709008	74709008	+	Missense_Mutation	SNP	C	C	T	rs140707085		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA7A	NM_003612	exon7	c.G709A	p.D237N	.	.	248	19	315	0	C|1.000;T|0.000	153
SERINC2	347735	hgsc.bcm.edu	37	1	31905905	31905905	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SERINC2	NM_001199038	exon10	c.G1132C	p.V378L	.	.	117	8	138	0	.	90
SERPINA4	5267	hgsc.bcm.edu	37	14	95033451	95033451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SERPINA4	NM_006215	exon3	c.T794C	p.V265A	.	.	118	5	147	0	.	230
SERPINA4	5267	hgsc.bcm.edu	37	14	95034486	95034486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SERPINA4	NM_006215	exon4	c.A944G	p.E315G	.	.	68	4	103	0	.	230
SHQ1	55164	bcgsc.ca	37	3	72799690	72799690	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SHQ1	NM_018130	exon11	c.T1479C	p.G493G	.	.	142	5	147	0	.	137
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38095410	38095410	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIM2	NM_005069	exon5	c.C522A	p.G174G	.	.	58	14	80	0	.	90
SIRPB1	10326	broad.mit.edu	37	20	1552512	1552512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIRPB1	NM_006065	exon3	c.A605G	p.D202G	.	.	629	9	728	1	.	91
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1460431	1460431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIRPB2	NM_001122962	exon2	c.C365T	p.T122I	.	.	217	61	233	0	.	226
SKIDA1	387640	hgsc.bcm.edu;mdanderson.org	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_207371	exon4	c.G1266A	p.E422E	.	.	50	9	46	0	.	.
SKIDA1	387640	mdanderson.org	37	10	21805480	21805480	+	Silent	SNP	T	T	C	rs201836118		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_207371	exon4	c.A1272G	p.E424E	.	.	51	14	45	1	.	.
SLC16A4	9122	hgsc.bcm.edu	37	1	110919681	110919682	+	In_Frame_Ins	INS	-	-	TGA	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1133_1134insTCA	p.I378delinsII	.	.	96	0	144	0	.	93
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110919677	110919678	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1137_1138insAG	p.T379fs	.	.	98	32	145	0	.	93
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110919678	110919679	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1136_1137insT	p.T379fs	.	.	98	32	147	0	.	93
SLC17A2	10246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25917214	25917214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC17A2	NM_005835	exon7	c.T751C	p.S251P	.	.	91	26	88	1	.	91
SLC17A8	246213	hgsc.bcm.edu	37	12	100813891	100813891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC17A8	NM_139319	exon12	c.T1724C	p.L575P	.	.	51	4	49	0	.	93
SLC1A1	6505	hgsc.bcm.edu	37	9	4490708	4490708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC1A1	NM_004170	exon1	c.A29G	p.E10G	.	.	83	4	145	0	.	514
SLC25A30	253512	hgsc.bcm.edu;bcgsc.ca	37	13	45978525	45978525	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC25A30	NM_001010875	exon5	c.G330A	p.V110V	.	.	42	4	85	0	.	135
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62373927	62373927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC2A4RG	NM_020062	exon6	c.G919A	p.V307I	.	.	39	6	40	0	.	90
SLC38A7	55238	hgsc.bcm.edu	37	16	58712696	58712696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC38A7	NM_018231	exon4	c.A373G	p.K125E	.	.	84	4	124	0	.	69
SLC39A7	7922	hgsc.bcm.edu	37	6	33169120	33169120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC39A7	NM_006979	exon1	c.A98G	p.D33G	.	.	132	6	113	0	.	67
SLC6A15	55117	hgsc.bcm.edu	37	12	85277565	85277565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC6A15	NM_018057	exon5	c.A829G	p.T277A	.	.	111	5	118	0	.	93
SLC6A1	6529	hgsc.bcm.edu	37	3	11064104	11064104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC6A1	NM_003042	exon7	c.T664C	p.W222R	.	.	143	6	133	0	.	92
SLC9A6	10479	bcgsc.ca	37	X	135081107	135081107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC9A6	NM_001042537	exon5	c.T773C	p.I258T	.	.	101	4	128	0	.	131
SLITRK3	22865	hgsc.bcm.edu	37	3	164907099	164907099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLITRK3	NM_014926	exon2	c.A1520G	p.K507R	.	.	88	4	89	0	.	100
SMCR8	140775	hgsc.bcm.edu;bcgsc.ca	37	17	18219495	18219495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMCR8	NM_144775	exon1	c.G392A	p.G131D	.	.	61	4	42	0	.	91
SMG5	23381	hgsc.bcm.edu	37	1	156236144	156236144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMG5	NM_015327	exon12	c.A1283G	p.E428G	.	.	104	5	39	0	.	231
SMTNL1	219537	hgsc.bcm.edu	37	11	57310650	57310650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMTNL1	NM_001105565	exon1	c.A535G	p.T179A	.	.	77	4	91	0	.	23
SMYD5	10322	hgsc.bcm.edu	37	2	73452974	73452974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMYD5	NM_006062	exon13	c.A1157G	p.D386G	.	.	70	4	83	0	.	226
SNX25	83891	bcgsc.ca	37	4	186267741	186267741	+	Silent	SNP	T	T	C	rs199747541	alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SNX25	NM_031953	exon13	c.T1746C	p.P582P	.	.	178	6	172	0	T|0.999;G|0.000	273
SNX32	254122	hgsc.bcm.edu;bcgsc.ca	37	11	65618862	65618862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SNX32	NM_152760	exon8	c.A773G	p.N258S	.	.	51	4	65	0	.	68
SPAG9	9043	hgsc.bcm.edu	37	17	49043633	49043633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPAG9	NM_001130528	exon30	c.A3966G	p.X1322W	.	.	85	5	93	0	.	659
SPATA7	55812	bcgsc.ca	37	14	88904640	88904640	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPATA7	NM_018418	exon12	c.T1674C	p.G558G	.	.	128	5	181	1	.	91
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220333960	220333960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPEG	NM_005876	exon13	c.C3574T	p.R1192W	.	.	169	58	174	0	.	383
SPI1	6688	hgsc.bcm.edu	37	11	47380449	47380449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPI1	NM_001080547	exon4	c.G442A	p.D148N	.	.	124	5	171	0	.	226
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	160	65	82	0	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	152	25	86	0	A|0.010;C|0.001;T|0.988	45
SPRY3	10251	bcgsc.ca	37	X	155004229	155004229	+	Silent	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPRY3	NM_005840	exon2	c.A696C	p.L232L	.	.	155	42	221	15	.	136
ST8SIA6	338596	bcgsc.ca	37	10	17401595	17401595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ST8SIA6	NM_001004470	exon4	c.T295C	p.S99P	.	.	109	5	115	1	.	91
STARD8	9754	hgsc.bcm.edu	37	X	67936251	67936251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STARD8	NM_001142503	exon5	c.A275G	p.E92G	.	.	94	4	117	0	.	196
STK10	6793	hgsc.bcm.edu	37	5	171509502	171509502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STK10	NM_005990	exon12	c.A1817G	p.K606R	.	.	100	4	88	0	.	1022
STXBP5	134957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	147680286	147680286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STXBP5	NM_001127715	exon23	c.G2372T	p.R791L	.	.	58	24	92	0	.	90
STXBP5L	9515	hgsc.bcm.edu;bcgsc.ca	37	3	120941904	120941904	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STXBP5L	NM_014980	exon11	c.A1011G	p.R337R	.	.	114	5	132	0	.	77
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	113169740	113169740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SVEP1	NM_153366	exon38	c.T8140C	p.S2714P	.	.	131	7	109	0	.	75
SYCP2	10388	bcgsc.ca	37	20	58494596	58494596	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SYCP2	NM_014258	exon5	c.A354G	p.K118K	.	.	153	5	138	0	.	525
SYNE2	23224	hgsc.bcm.edu	37	14	64496677	64496677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SYNE2	NM_182914	exon44	c.A6779G	p.D2260G	.	.	80	4	119	0	.	164
SYNPO2	171024	hgsc.bcm.edu	37	4	119948231	119948231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SYNPO2	NM_001128934	exon3	c.A707G	p.D236G	.	.	84	4	81	0	.	92
TBC1D14	57533	bcgsc.ca	37	4	6969129	6969129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBC1D14	NM_001113361	exon3	c.A821G	p.K274R	.	.	23	3	34	0	.	92
TBC1D25	4943	broad.mit.edu	37	X	48398298	48398298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBC1D25	NM_002536	exon1	c.T113C	p.V38A	.	.	36	3	75	0	.	131
TBC1D2B	23102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	78305187	78305187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBC1D2B	NM_144572	exon9	c.G2248C	p.G750R	.	.	232	16	234	0	.	136
TBCCD1	55171	hgsc.bcm.edu	37	3	186282013	186282013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBCCD1	NM_001134415	exon2	c.A106G	p.I36V	.	.	78	4	92	0	.	108
TBX5	6910	hgsc.bcm.edu	37	12	114793494	114793494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBX5	NM_000192	exon9	c.T1400C	p.V467A	.	.	67	4	101	0	.	98
TCF4	6925	hgsc.bcm.edu	37	18	53018227	53018227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TCF4	NM_001243226	exon8	c.T683C	p.L228P	.	.	100	4	125	0	.	523
TECTA	7007	hgsc.bcm.edu	37	11	121060537	121060537	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TECTA	NM_005422	exon22	c.T6315C	p.P2105P	.	.	88	4	102	0	.	225
TEKT5	146279	hgsc.bcm.edu	37	16	10729745	10729745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TEKT5	NM_144674	exon6	c.A1117G	p.T373A	.	.	99	4	114	0	.	92
TENM3	55714	hgsc.bcm.edu	37	4	183575041	183575041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001080477	exon5	c.A1106G	p.D369G	.	.	92	4	115	0	.	.
TERT	7015	hgsc.bcm.edu	37	5	1293886	1293886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TERT	NM_001193376	exon2	c.T1115C	p.M372T	.	.	82	4	91	0	.	1272
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24729674	24729674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TGM1	NM_000359	exon4	c.T739C	p.F247L	.	.	57	21	89	0	.	91
THAP8	199745	bcgsc.ca	37	19	36526399	36526399	+	Silent	SNP	T	T	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	THAP8	NM_152658	exon4	c.A768C	p.A256A	.	.	76	25	156	10	.	90
THEM6	51337	hgsc.bcm.edu	37	8	143809193	143809193	+	Silent	SNP	C	C	T	rs2257840		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_016647	exon1	c.C429T	p.G143G	.	.	6	6	0	0	C|0.534;T|0.466	.
THSD1	55901	hgsc.bcm.edu	37	13	52971459	52971459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	THSD1,NS,malignant_melanoma,+1	THSD1	NM_018676	exon3	c.T929C	p.M310T	.	.	66	3	92	0	.	94
TLR7	51284	hgsc.bcm.edu	37	X	12904278	12904278	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TLR7	NM_016562	exon3	c.A651G	p.T217T	.	.	97	4	134	0	.	564
TLR7	51284	hgsc.bcm.edu	37	X	12905003	12905003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TLR7	NM_016562	exon3	c.T1376C	p.V459A	.	.	69	4	69	0	.	564
TMEM161B	153396	bcgsc.ca	37	5	87516503	87516503	+	Missense_Mutation	SNP	A	A	C	rs201311722	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TMEM161B	NM_153354	exon5	c.T323G	p.V108G	.	.	147	41	138	11	A|0.950;C|0.050	92
TMEM67	91147	hgsc.bcm.edu	37	8	94827602	94827602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TMEM67	NM_153704	exon27	c.T2834C	p.L945P	.	.	86	4	78	0	.	92
TNR	7143	hgsc.bcm.edu	37	1	175323568	175323568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNR	NM_003285	exon18	c.A3341G	p.D1114G	.	.	88	4	103	0	.	324
TNRC18	84629	hgsc.bcm.edu	37	7	5396833	5396833	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNRC18	NM_001080495	exon16	c.C4908A	p.L1636L	.	.	93	4	118	0	.	46
TNRC6B	23112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40521858	40521858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNRC6B	NM_001024843	exon3	c.A37G	p.S13G	.	.	74	17	90	1	.	22
TNS1	7145	hgsc.bcm.edu	37	2	218713178	218713178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNS1	NM_022648	exon17	c.T1687C	p.S563P	.	.	125	5	114	0	.	156
TPRX1	284355	hgsc.bcm.edu	37	19	48305646	48305646	+	Missense_Mutation	SNP	G	G	A	rs112842028		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TPRX1	NM_198479	exon2	c.C622T	p.P208S	.	.	34	6	37	0	G|0.500;A|0.500	90
TPX2	22974	hgsc.bcm.edu	37	20	30366726	30366726	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TPX2	NM_012112	exon10	c.T993C	p.V331V	.	.	92	4	96	0	.	290
TRAK1	22906	hgsc.bcm.edu	37	3	42251577	42251577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TRAK1	NM_001265608	exon14	c.C2063A	p.T688K	.	.	86	4	87	0	.	91
TRAPPC11	60684	hgsc.bcm.edu	37	4	184589187	184589187	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_021942	exon5	c.A477G	p.A159A	.	.	59	3	76	0	.	.
TRIM52	84851	hgsc.bcm.edu	37	5	180687440	180687440	+	Silent	SNP	T	T	C	rs80005177	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TRIM52	NM_032765	exon1	c.A375G	p.E125E	.	.	160	13	116	0	T|0.991;C|0.009	90
TRIM7	81786	hgsc.bcm.edu	37	5	180622632	180622632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TRIM7	NM_203293	exon7	c.T1070C	p.L357P	.	.	121	5	114	0	.	228
TROVE2	6738	hgsc.bcm.edu	37	1	193060792	193060792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TROVE2	NM_001042370	exon10	c.A1596G	p.I532M	.	.	97	4	89	0	.	115
TRRAP	8295	hgsc.bcm.edu	37	7	98508787	98508787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TRRAP	NM_001244580	exon17	c.C1900T	p.H634Y	.	.	100	4	136	0	.	923
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31769301	31769301	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TSHZ3	NM_020856	exon2	c.G1398C	p.L466L	.	.	177	34	191	0	.	232
TTBK1	84630	hgsc.bcm.edu	37	6	43250734	43250734	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TTBK1	NM_032538	exon14	c.A2256G	p.E752E	.	.	77	5	59	0	.	353
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179506015	179506015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TTN	NM_001267550	exon220	c.A40586G	p.E13529G	.	.	67	4	83	0	.	636
TYR	7299	hgsc.bcm.edu	37	11	88911210	88911210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TYR	NM_000372	exon1	c.T89C	p.L30P	.	.	100	4	114	0	.	92
UGT2B28	54490	broad.mit.edu;ucsc.edu	37	4	70160274	70160274	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UGT2B28	NM_053039	exon6	c.C1337G	p.S446X	.	.	63	11	72	0	.	91
UNC13B	10497	hgsc.bcm.edu	37	9	35378361	35378361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UNC13B	NM_006377	exon16	c.T1886C	p.V629A	.	.	93	4	109	0	.	157
URI1	8725	mdanderson.org	37	19	30500143	30500143	+	Silent	SNP	T	T	C	rs1127493	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_003796	exon8	c.T918C	p.D306D	.	.	52	11	54	0	T|0.979;C|0.021	.
USP48	84196	hgsc.bcm.edu	37	1	22083078	22083078	+	Missense_Mutation	SNP	T	T	C	rs4253886	bycluster;alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	USP48	NM_001032730	exon3	c.A373G	p.S125G	.	.	92	3	172	0	T|1.000;|0.000	659
USP9X	8239	bcgsc.ca	37	X	41078378	41078378	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	USP9X	NM_001039591	exon38	c.T6459C	p.S2153S	.	.	75	4	157	1	.	563
UTRN	7402	hgsc.bcm.edu;bcgsc.ca	37	6	144801024	144801024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UTRN	NM_007124	exon25	c.A3413G	p.Q1138R	.	.	50	5	55	0	.	95
UTS2	10911	hgsc.bcm.edu	37	1	7912998	7912998	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UTS2	NM_006786	exon1	c.T66C	p.P22P	.	.	120	5	192	0	.	90
VPS41	27072	hgsc.bcm.edu	37	7	38869928	38869928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	VPS41	NM_014396	exon5	c.A247G	p.S83G	.	.	80	4	81	0	.	93
WDR12	55759	broad.mit.edu	37	2	203760875	203760875	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR12	NM_018256	exon6	c.A522G	p.V174V	.	.	164	5	165	0	.	90
WDR19	57728	hgsc.bcm.edu;bcgsc.ca	37	4	39191330	39191330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR19	NM_025132	exon4	c.T219C	p.A73A	.	.	103	5	152	0	.	67
WDR26	80232	hgsc.bcm.edu;bcgsc.ca	37	1	224588733	224588733	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR26	NM_025160	exon9	c.A1338G	p.E446E	.	.	78	5	79	0	.	90
WDR65	149465	bcgsc.ca	37	1	43685120	43685120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR65	NM_001195831	exon13	c.G2159A	p.R720Q	.	.	32	4	55	0	.	91
WHSC1	7468	hgsc.bcm.edu	37	4	1932357	1932357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WHSC1	NM_133335	exon6	c.T1415C	p.V472A	.	.	91	4	112	0	.	664
WWC1	23286	hgsc.bcm.edu	37	5	167881041	167881041	+	Missense_Mutation	SNP	A	A	G	rs140933524	byfrequency	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WWC1	NM_015238	exon18	c.A2594G	p.E865G	.	.	151	11	167	0	A|0.995;G|0.005	157
YEATS2	55689	hgsc.bcm.edu	37	3	183472104	183472104	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	YEATS2	NM_018023	exon11	c.A1341G	p.S447S	.	.	81	4	76	0	.	138
YLPM1	56252	hgsc.bcm.edu	37	14	75265057	75265057	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	YLPM1	NM_019589	exon5	c.T3057C	p.S1019S	.	.	75	4	83	0	.	71
ZBTB39	9880	broad.mit.edu;bcgsc.ca	37	12	57398291	57398291	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZBTB39	NM_014830	exon2	c.C411T	p.T137T	.	.	148	5	151	1	.	135
ZDHHC1	29800	hgsc.bcm.edu	37	16	67434899	67434899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZDHHC1	NM_013304	exon4	c.T389C	p.V130A	.	.	148	6	176	0	.	90
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42742306	42742306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFP106	NM_022473	exon2	c.T2095G	p.L699V	.	.	106	26	104	0	.	515
ZFP2	80108	bcgsc.ca	37	5	178359161	178359161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFP2	NM_030613	exon5	c.T847C	p.S283P	.	.	56	4	62	0	.	93
ZFX	7543	hgsc.bcm.edu	37	X	24197777	24197777	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFX	NM_003410	exon5	c.A536T	p.E179V	.	.	89	7	130	0	.	132
ZFX	7543	hgsc.bcm.edu	37	X	24197779	24197779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFX	NM_003410	exon5	c.G538T	p.V180L	.	.	88	6	130	0	.	132
ZFYVE9	9372	hgsc.bcm.edu	37	1	52703754	52703754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFYVE9	NM_007323	exon4	c.A665G	p.E222G	.	.	98	4	80	0	.	230
ZNF154	7710	bcgsc.ca	37	19	58213454	58213454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF154	NM_001085384	exon3	c.T863C	p.L288P	.	.	67	5	48	0	.	90
ZNF232	7775	hgsc.bcm.edu;bcgsc.ca	37	17	5009622	5009622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF232	NM_014519	exon5	c.T832C	p.W278R	.	.	78	4	80	0	.	154
ZNF28	7576	hgsc.bcm.edu	37	19	53303761	53303761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF28	NM_006969	exon4	c.A1337G	p.K446R	.	.	70	4	53	0	.	91
ZNF562	54811	hgsc.bcm.edu	37	19	9768758	9768758	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF562	NM_001130032	exon4	c.T168C	p.A56A	.	.	69	4	142	0	.	90
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57133319	57133319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF71	NM_021216	exon3	c.G664A	p.A222T	.	.	118	18	100	0	.	91
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23556628	23556628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF91	NM_003430	exon3	c.T169C	p.S57P	.	.	71	4	117	0	.	90
ZZEF1	23140	hgsc.bcm.edu	37	17	3920939	3920939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZZEF1	NM_015113	exon48	c.A7727G	p.Q2576R	.	.	98	4	130	0	.	93
RTL1	388015	hgsc.bcm.edu	37	14	101350675	101350676	+	Missense_Mutation	DNP	GA	GA	CT	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	.	.	.	p.Q151E	.	.	.	.	.	.	.	
GPSM2	29899	hgsc.bcm.edu	37	1	109465167	109465168	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	.	.	.	p.S524T	.	.	.	.	.	.	.	
