Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADAC	13	hgsc.bcm.edu	37	3	151542580	151542580	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AADAC	NM_001086	exon4	c.A561G	p.G187G	.	.	164	3	105	0	.	280
AATK	9625	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	79094085	79094085	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AATK	NM_001080395	exon11	c.G3651C	p.L1217L	.	.	175	39	105	0	.	933
ABCA13	154664	bcgsc.ca	37	7	48280609	48280609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA13	NM_152701	exon10	c.T1208C	p.L403P	.	.	227	8	164	1	.	521
ABCA2	20	hgsc.bcm.edu	37	9	139906582	139906582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA2	NM_212533	exon34	c.A5422G	p.T1808A	.	.	83	4	56	0	.	90
ABCA4	24	bcgsc.ca	37	1	94578549	94578549	+	Missense_Mutation	SNP	G	G	C	rs143207212	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA4	NM_000350	exon2	c.C140G	p.P47R	.	.	367	10	225	0	G|1.000;A|0.000	162
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu	37	17	67255885	67255885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA5	NM_018672	exon27	c.3693delA	p.K1231fs	.	.	266	18	137	0	.	93
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu	37	17	67282042	67282042	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA5	NM_018672	exon16	c.2269delT	p.S757fs	.	.	179	13	93	0	.	93
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu	37	17	66918423	66918423	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA8	NM_007168	exon11	c.1461delA	p.K487fs	.	.	197	14	92	0	.	93
ABCB5	340273	hgsc.bcm.edu	37	7	20698161	20698161	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCB5	NM_001163941	exon14	c.T1569C	p.A523A	.	.	83	3	89	0	.	158
ABCB6	10058	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220075719	220075719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCB6	NM_005689	exon15	c.G2080T	p.D694Y	.	.	149	41	115	0	.	153
ABCB8	11194	hgsc.bcm.edu	37	7	150739104	150739104	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCB8	NM_007188	exon14	c.A1674G	p.E558E	.	.	95	4	52	0	.	108
ABCC9	10060	hgsc.bcm.edu;bcgsc.ca	37	12	22012588	22012588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCC9	NM_005691	exon20	c.A2437G	p.S813G	.	.	63	4	78	0	.	96
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu	37	12	22001144	22001144	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCC9	NM_005691	exon23	c.2806delA	p.T936fs	.	.	190	12	334	0	.	96
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu	37	4	146033436	146033436	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCE1	NM_002940	exon9	c.756delT	p.R252fs	.	.	153	12	139	0	.	91
ABCG2	9429	bcgsc.ca	37	4	89015789	89015789	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCG2	NM_004827	exon15	c.1760delT	p.L587fs	.	.	63	6	110	0	.	90
ABHD12B	145447	hgsc.bcm.edu;broad.mit.edu	37	14	51368597	51368597	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABHD12B	NM_001206673	exon10	c.831delA	p.R277fs	.	.	114	11	85	0	.	153
ABL2	27	hgsc.bcm.edu;broad.mit.edu	37	1	179086622	179086622	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABL2	NM_007314	exon8	c.1253delG	p.G418fs	.	.	183	12	96	0	.	1081
ACADVL	37	hgsc.bcm.edu	37	17	7123922	7123922	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACADVL	NM_001270447	exon5	c.274-1G>A	.	.	.	66	4	93	0	.	93
ACAN	176	hgsc.bcm.edu;broad.mit.edu	37	15	89386594	89386594	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACAN	NM_001135	exon6	c.766delT	p.F256fs	.	.	187	12	151	0	.	25
ACAN	176	hgsc.bcm.edu;broad.mit.edu	37	15	89400592	89400592	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACAN	NM_001135	exon12	c.4776delA	p.G1592fs	.	.	166	10	118	0	.	25
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu	37	3	195016526	195016526	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACAP2	NM_012287	exon17	c.1583delA	p.K528fs	.	.	263	16	182	0	.	136
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu	37	11	44077622	44077622	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACCSL	NM_001031854	exon10	c.1172delG	p.W391fs	.	.	192	12	100	0	.	95
ACE	1636	hgsc.bcm.edu	37	17	61568576	61568576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACE	NM_000789	exon19	c.A2746G	p.T916A	.	.	82	4	62	0	.	94
ACMSD	130013	hgsc.bcm.edu	37	2	135621155	135621155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACMSD	NM_138326	exon5	c.T440C	p.V147A	.	.	91	4	94	0	.	91
ACO1	48	hgsc.bcm.edu	37	9	32425907	32425907	+	Silent	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACO1	NM_002197	exon11	c.T1260G	p.T420T	.	.	98	4	121	0	.	226
ACPP	55	hgsc.bcm.edu;broad.mit.edu	37	3	132075605	132075605	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACPP	NM_001099	exon10	c.1044delC	p.S348fs	.	.	166	10	117	0	.	91
ACRC	93953	hgsc.bcm.edu;broad.mit.edu	37	X	70800684	70800684	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACRC	NM_052957	exon2	c.13delA	p.K5fs	.	.	239	17	215	0	.	93
ACSM1	116285	hgsc.bcm.edu	37	16	20682956	20682956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACSM1	NM_052956	exon4	c.A649G	p.T217A	.	.	114	5	81	0	.	91
ACSM1	116285	hgsc.bcm.edu	37	16	20696513	20696513	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACSM1	NM_052956	exon3	c.403+2T>C	.	.	.	96	4	100	0	.	91
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu	37	16	20808252	20808252	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACSM3	NM_005622	exon14	c.1719delA	p.T573fs	.	.	208	13	210	0	.	91
ACTL6A	86	bcgsc.ca	37	3	179299000	179299000	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACTL6A	NM_004301	exon11	c.A1018T	p.I340F	.	.	267	8	167	0	.	91
ACVR1	90	hgsc.bcm.edu;broad.mit.edu	37	2	158622477	158622477	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACVR1	NM_001105	exon8	c.1022delA	p.N341fs	.	.	161	10	141	0	.	980
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu	37	8	38880753	38880753	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAM9	NM_003816	exon9	c.823delG	p.G275fs	.	.	160	10	197	0	.	227
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu	37	5	33881513	33881513	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS12	NM_030955	exon2	c.200delT	p.L67fs	.	.	146	10	127	0	.	232
ADAMTS18	170692	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77327037	77327037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS18	NM_199355	exon20	c.G3125T	p.G1042V	.	.	80	23	62	0	.	1036
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu	37	5	128994381	128994381	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS19	NM_133638	exon15	c.2358delA	p.G786fs	.	.	167	10	80	0	.	295
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu	37	4	73280611	73280611	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS3	NM_014243	exon4	c.582delA	p.K194fs	.	.	161	10	124	0	.	651
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu	37	1	167780125	167780125	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADCY10	NM_018417	exon32	c.4508delA	p.N1503fs	.	.	222	13	141	0	.	493
ADCY2	108	hgsc.bcm.edu	37	5	7396594	7396594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADCY2	NM_020546	exon1	c.T185C	p.L62P	.	.	152	4	63	0	.	97
ADCY7	113	broad.mit.edu;bcgsc.ca	37	16	50338374	50338374	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADCY7	NM_001114	exon10	c.1472delG	p.W491fs	.	.	102	11	80	0	.	91
ADD2	119	hgsc.bcm.edu;broad.mit.edu	37	2	70890579	70890579	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADD2	NM_001617	exon16	c.2159delA	p.K720fs	.	.	122	11	109	0	.	93
ADH4	127	hgsc.bcm.edu	37	4	100060247	100060247	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADH4	NM_000670	exon4	c.T315C	p.C105C	.	.	101	4	119	0	.	228
ADH6	130	bcgsc.ca	37	4	100137366	100137366	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADH6	NM_000672	exon2	c.72delT	p.I24fs	.	.	48	5	78	0	.	228
ADNP	23394	hgsc.bcm.edu;broad.mit.edu	37	20	49508560	49508560	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADNP	NM_015339	exon5	c.2691delT	p.F897fs	.	.	144	10	109	0	.	92
AEBP2	121536	hgsc.bcm.edu;broad.mit.edu	37	12	19667647	19667647	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AEBP2	NM_001114176	exon7	c.1410delA	p.L470fs	.	.	164	10	195	0	.	23
AFF1	4299	hgsc.bcm.edu	37	4	88026981	88026981	+	Missense_Mutation	SNP	T	T	C	rs141434206	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AFF1	NM_001166693	exon10	c.T1360C	p.S454P	.	.	112	4	176	0	T|1.000;A|0.000	289
AGBL1	123624	bcgsc.ca	37	15	87531282	87531282	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152336	exon23	c.A3148C	p.N1050H	.	.	140	5	186	4	.	.
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu	37	15	87531281	87531281	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152336	exon23	c.3147delA	p.T1049fs	.	.	140	11	180	0	.	.
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu	37	11	47689211	47689211	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AGBL2	NM_024783	exon16	c.2252delA	p.K751fs	.	.	242	16	152	0	.	92
AGL	178	hgsc.bcm.edu;broad.mit.edu	37	1	100380997	100380997	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AGL	NM_000644	exon31	c.4214delA	p.E1405fs	.	.	369	23	208	0	.	92
AGO4	192670	hgsc.bcm.edu;broad.mit.edu	37	1	36306817	36306817	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_017629	exon14	c.1776delC	p.H592fs	.	.	158	10	113	0	.	.
AGPAT3	56894	hgsc.bcm.edu	37	21	45389012	45389012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AGPAT3	NM_001037553	exon4	c.T362C	p.L121P	.	.	119	3	119	0	.	90
AGPAT6	137964	broad.mit.edu;bcgsc.ca	37	8	41467429	41467429	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AGPAT6	NM_178819	exon4	c.491delG	p.W164fs	.	.	92	9	119	0	.	90
AGXT2	64902	hgsc.bcm.edu;broad.mit.edu	37	5	35025928	35025928	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AGXT2	NM_031900	exon9	c.903delG	p.G301fs	.	.	140	12	90	0	.	94
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu	37	1	247007131	247007131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AHCTF1	NM_015446	exon34	c.6518delA	p.N2173fs	.	.	1179	74	829	0	.	97
AHCYL1	10768	bcgsc.ca	37	1	110559035	110559035	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AHCYL1	NM_006621	exon8	c.A852G	p.K284K	.	.	198	7	101	0	.	91
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu	37	1	27875231	27875231	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AHDC1	NM_001029882	exon6	c.3396delT	p.F1132fs	.	.	154	10	88	0	.	90
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu	37	1	27876439	27876439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AHDC1	NM_001029882	exon6	c.2188delG	p.E730fs	.	.	351	22	196	0	.	90
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu	37	11	62288216	62288216	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AHNAK	NM_001620	exon5	c.13673delC	p.P4558fs	.	.	205	13	127	0	.	109
AIM1L	55057	hgsc.bcm.edu;broad.mit.edu	37	1	26670276	26670276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AIM1L	NM_001039775	exon2	c.2873delC	p.P958fs	.	.	154	10	106	0	.	91
AK7	122481	hgsc.bcm.edu;broad.mit.edu	37	14	96937909	96937909	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AK7	NM_152327	exon13	c.1452delA	p.P484fs	.	.	154	10	141	0	.	228
AKAP11	11215	hgsc.bcm.edu	37	13	42877272	42877272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP11	NM_016248	exon8	c.A4390G	p.S1464G	.	.	64	4	95	0	.	227
AKAP12	9590	hgsc.bcm.edu	37	6	151672185	151672185	+	Missense_Mutation	SNP	A	A	G	rs61748676	byfrequency;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP12	NM_005100	exon4	c.A2659G	p.S887G	.	.	123	5	84	0	A|0.978;T|0.022	293
AKAP13	11214	hgsc.bcm.edu	37	15	86124122	86124122	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP13	NM_007200	exon7	c.T2823C	p.A941A	.	.	89	4	100	0	.	258
AKAP4	8852	hgsc.bcm.edu;bcgsc.ca	37	X	49963345	49963345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP4	NM_003886	exon2	c.A86G	p.Y29C	.	.	119	7	79	0	.	540
AKAP9	10142	hgsc.bcm.edu	37	7	91726097	91726097	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP9	NM_005751	exon41	c.9824delA	p.Q3275fs	.	.	154	10	104	0	.	755
AKAP9	10142	hgsc.bcm.edu	37	7	91726654	91726654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP9	NM_005751	exon41	c.T10381A	p.Y3461N	.	.	56	2	40	0	.	755
ALCAM	214	hgsc.bcm.edu;broad.mit.edu	37	3	105243184	105243184	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ALCAM	NM_001627	exon3	c.226delA	p.K76fs	.	.	160	10	97	0	.	92
ALDH3B1	221	bcgsc.ca	37	11	67789293	67789293	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	254	2	199	1	.	.
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu	37	18	56246440	56246440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ALPK2	NM_052947	exon4	c.1568delA	p.K523fs	.	.	125	10	108	0	.	765
AMFR	267	hgsc.bcm.edu;broad.mit.edu	37	16	56441911	56441911	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AMFR	NM_001144	exon4	c.631delC	p.H211fs	.	.	198	12	196	0	.	1009
AMN	81693	hgsc.bcm.edu	37	14	103395267	103395267	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AMN	NM_030943	exon5	c.T468C	p.P156P	.	.	53	4	32	0	.	90
AMPD3	272	hgsc.bcm.edu;broad.mit.edu	37	11	10524339	10524339	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AMPD3	NM_000480	exon13	c.1941delT	p.S647fs	.	.	152	10	141	0	.	291
ANGEL2	90806	hgsc.bcm.edu;broad.mit.edu	37	1	213181561	213181561	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANGEL2	NM_144567	exon3	c.633delT	p.F211fs	.	.	219	14	126	0	.	68
ANGEL2	90806	hgsc.bcm.edu;broad.mit.edu	37	1	213181758	213181758	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANGEL2	NM_144567	exon3	c.436delA	p.T146fs	.	.	195	13	111	0	.	68
ANK2	287	hgsc.bcm.edu	37	4	114276005	114276005	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANK2	NM_001148	exon38	c.A6231G	p.K2077K	.	.	92	5	108	0	.	583
ANKAR	150709	hgsc.bcm.edu	37	2	190569759	190569759	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKAR	NM_144708	exon8	c.T1719C	p.P573P	.	.	85	3	83	0	.	72
ANKAR	150709	hgsc.bcm.edu;broad.mit.edu	37	2	190569839	190569839	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKAR	NM_144708	exon8	c.1799delA	p.E600fs	.	.	153	10	146	0	.	72
ANKH	56172	bcgsc.ca	37	5	14716850	14716850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKH	NM_054027	exon9	c.T1106C	p.V369A	.	.	154	6	90	1	.	91
ANKLE2	23141	hgsc.bcm.edu;broad.mit.edu	37	12	133312071	133312071	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKLE2	NM_015114	exon9	c.1621delA	p.T541fs	.	.	180	11	120	0	.	68
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu	37	18	9257212	9257212	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD12	NM_015208	exon9	c.3947delT	p.I1316fs	.	.	134	10	146	0	.	92
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu	37	18	9279634	9279634	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD12	NM_015208	exon12	c.5995delA	p.K1999fs	.	.	221	14	174	0	.	92
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu	37	4	73957752	73957752	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD17	NM_032217	exon29	c.5593delA	p.T1865fs	.	.	197	14	190	0	.	234
ANKRD18B	441459	hgsc.bcm.edu;broad.mit.edu	37	9	33536901	33536901	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001244752	exon6	c.766delA	p.K256fs	.	.	200	13	168	0	.	.
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu	37	10	27303455	27303455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD26	NM_014915	exon31	c.4692delA	p.K1564fs	.	.	152	10	150	0	.	138
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu	37	10	27317833	27317833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD26	NM_014915	exon27	c.3920delA	p.K1307fs	.	.	242	16	219	0	.	138
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu	37	10	37505286	37505286	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD30A	NM_052997	exon32	c.2879delA	p.Q960fs	.	.	340	22	329	0	.	161
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu	37	18	14848892	14848892	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD30B	NM_001145029	exon34	c.3002delA	p.Q1001fs	.	.	344	23	312	0	.	24
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu	37	4	125590577	125590577	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD50	NM_020337	exon4	c.3855delA	p.K1285fs	.	.	228	14	219	0	.	90
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu	37	4	125591535	125591535	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD50	NM_020337	exon4	c.2897delT	p.L966X	.	.	179	15	160	0	.	90
ANKRD6	22881	bcgsc.ca	37	6	90333600	90333600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD6	NM_001242809	exon12	c.T1042G	p.F348V	.	.	179	6	136	0	.	93
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKS1A	NM_015245	exon7	c.953delC	p.T318fs	.	.	136	11	78	0	.	94
ANTXR2	118429	hgsc.bcm.edu;broad.mit.edu	37	4	80957125	80957125	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANTXR2	NM_058172	exon9	c.697+1G>-	.	.	.	214	13	160	0	.	23
ANXA2P3	305	ucsc.edu;bcgsc.ca	37	10	66586163	66586163	+	RNA	SNP	G	G	A	rs113156089		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	70	11	66	2	A|1.000;|0.000	.
AOX1	316	hgsc.bcm.edu;broad.mit.edu	37	2	201485931	201485931	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AOX1	NM_001159	exon18	c.1963delT	p.F655fs	.	.	188	12	172	0	.	96
AP1S2	8905	hgsc.bcm.edu;broad.mit.edu	37	X	15864073	15864073	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AP1S2	NM_001272071	exon3	c.241delG	p.E81fs	.	.	166	10	131	0	.	130
AP3D1	8943	hgsc.bcm.edu	37	19	2123875	2123875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AP3D1	NM_001261826	exon10	c.T860C	p.L287P	.	.	148	4	136	0	.	90
AP5M1	55745	hgsc.bcm.edu	37	14	57741096	57741096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_018229	exon2	c.A209G	p.E70G	.	.	114	3	105	0	.	.
APBA2	321	hgsc.bcm.edu	37	15	29397672	29397672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	APBA2	NM_005503	exon10	c.A1615G	p.S539G	.	.	123	3	86	0	.	90
APC	324	bcgsc.ca	37	5	112173856	112173856	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	APC	NM_001127510	exon17	c.A2565G	p.E855E	.	.	128	5	87	0	.	12026
APOBEC3B	9582	hgsc.bcm.edu;broad.mit.edu	37	22	39381926	39381926	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	APOBEC3B	NM_004900	exon3	c.284delC	p.T95fs	.	.	127	10	126	0	.	227
APOOL	139322	hgsc.bcm.edu	37	X	84306506	84306506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	APOOL	NM_198450	exon3	c.T232G	p.W78G	.	.	74	2	67	0	.	130
AQR	9716	bcgsc.ca	37	15	35149009	35149009	+	Missense_Mutation	SNP	G	G	T	rs192419915	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AQR	NM_014691	exon35	c.C4442A	p.P1481Q	.	.	168	6	155	1	G|0.997;A|0.003	135
AQR	9716	hgsc.bcm.edu;broad.mit.edu	37	15	35174733	35174733	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AQR	NM_014691	exon27	c.3135delA	p.K1045fs	.	.	149	10	161	0	.	135
ARFGAP2	84364	hgsc.bcm.edu;broad.mit.edu	37	11	47196853	47196853	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFGAP2	NM_001242832	exon4	c.276delT	p.F92fs	.	.	226	17	165	0	.	69
ARFGEF1	10565	hgsc.bcm.edu;bcgsc.ca	37	8	68113709	68113709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFGEF1	NM_006421	exon37	c.C5260G	p.L1754V	.	.	349	16	106	0	.	294
ARFIP1	27236	hgsc.bcm.edu;bcgsc.ca	37	4	153803996	153803996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFIP1	NM_001025595	exon7	c.A755G	p.D252G	.	.	66	4	60	0	.	91
ARHGAP17	55114	hgsc.bcm.edu	37	16	24950880	24950880	+	Missense_Mutation	SNP	C	C	A	rs78457529	byfrequency;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP17	NM_001006634	exon17	c.G1529T	p.R510L	.	.	81	4	63	0	C|0.992;T|0.008	227
ARHGAP19	84986	hgsc.bcm.edu	37	10	99025639	99025639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP19	NM_001204300	exon2	c.T300C	p.S100S	.	.	84	3	61	0	.	651
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu	37	11	110454273	110454273	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP20	NM_020809	exon14	c.1604delA	p.K535fs	.	.	141	10	90	0	.	230
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu	37	19	36278689	36278689	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP33	NM_052948	exon21	c.2739delC	p.G913fs	.	.	160	10	136	0	.	229
ARHGAP35	2909	hgsc.bcm.edu	37	19	47422735	47422735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_004491	exon1	c.A803G	p.Q268R	.	.	99	3	73	0	.	.
ARHGEF26	26084	hgsc.bcm.edu;bcgsc.ca	37	3	153839867	153839867	+	Missense_Mutation	SNP	T	T	C	rs200926651	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGEF26	NM_001251962	exon2	c.T86C	p.V29A	.	.	231	11	146	0	.	47
ARHGEF37	389337	hgsc.bcm.edu	37	5	149006643	149006643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGEF37	NM_001001669	exon11	c.T1469C	p.L490P	.	.	209	6	94	0	.	90
ARHGEF5	7984	hgsc.bcm.edu;broad.mit.edu	37	7	144075858	144075858	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGEF5	NM_005435	exon14	c.4535delC	p.S1512fs	.	.	227	14	161	0	.	229
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu	37	1	27087916	27087916	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARID1A	NM_006015	exon6	c.2203delA	p.S735fs	.	.	507	34	330	0	.	584
ARID1B	57492	hgsc.bcm.edu	37	6	157099949	157099949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARID1B	NM_017519	exon1	c.A886G	p.N296D	.	.	37	3	23	0	.	154
ARID3A	1820	hgsc.bcm.edu	37	19	932477	932477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARID3A	NM_005224	exon3	c.A428G	p.E143G	.	.	71	3	48	0	.	90
ARL3	403	hgsc.bcm.edu;broad.mit.edu	37	10	104449670	104449670	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARL3	NM_004311	exon4	c.295delA	p.R99fs	.	.	157	10	147	0	.	227
ARSF	416	hgsc.bcm.edu	37	X	2994595	2994595	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARSF	NM_004042	exon4	c.T168C	p.P56P	.	.	66	4	48	0	.	132
ASAP2	8853	hgsc.bcm.edu;bcgsc.ca	37	2	9515031	9515031	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASAP2	NM_001135191	exon17	c.T1704C	p.D568D	.	.	71	4	61	0	.	90
ASCC3	10973	hgsc.bcm.edu;bcgsc.ca	37	6	101312035	101312035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASCC3	NM_006828	exon3	c.A146G	p.K49R	.	.	112	5	75	0	.	96
ASF1A	25842	hgsc.bcm.edu;broad.mit.edu	37	6	119228580	119228580	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014034	exon4	c.416delT	p.I139fs	.	.	188	12	123	0	.	.
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu	37	1	155307895	155307895	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASH1L	NM_018489	exon27	c.8788delA	p.I2930fs	.	.	169	10	102	0	.	234
ASIC2	40	hgsc.bcm.edu;broad.mit.edu	37	17	31439005	31439005	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_183377	exon2	c.789delG	p.G263fs	.	.	155	10	148	0	.	.
ASPM	259266	hgsc.bcm.edu;broad.mit.edu	37	1	197102505	197102505	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASPM	NM_001206846	exon6	c.2394delA	p.K798fs	.	.	180	11	100	0	.	615
ASXL2	55252	hgsc.bcm.edu	37	2	25966582	25966582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASXL2	NM_018263	exon12	c.A2624G	p.D875G	.	.	72	3	66	0	.	23
ASXL3	80816	hgsc.bcm.edu	37	18	31320093	31320093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASXL3	NM_030632	exon11	c.T2725C	p.S909P	.	.	100	3	108	0	.	49
ATAD2B	54454	hgsc.bcm.edu	37	2	24033288	24033288	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATAD2B	NM_001242338	exon18	c.T2352C	p.A784A	.	.	118	4	120	0	.	68
ATAT1	79969	hgsc.bcm.edu;broad.mit.edu	37	6	30610661	30610661	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATAT1	NM_024909	exon10	c.841delC	p.P281fs	.	.	132	10	83	0	.	92
ATF3	467	hgsc.bcm.edu;broad.mit.edu	37	1	212788594	212788594	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATF3	NM_001674	exon2	c.231delA	p.T77fs	.	.	149	14	89	0	.	658
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu	37	16	10551340	10551340	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATF7IP2	NM_024997	exon7	c.1306delA	p.K436fs	.	.	140	10	144	0	.	186
ATG2B	55102	hgsc.bcm.edu	37	14	96761480	96761480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATG2B	NM_018036	exon36	c.T5243C	p.V1748A	.	.	90	5	110	0	.	93
ATG9B	285973	ucsc.edu;bcgsc.ca	37	7	150713902	150713902	+	Splice_Site	SNP	G	G	C	rs76257575		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATG9B	.	.	.	.	.	.	99	1	108	0	.	91
ATP2A2	488	hgsc.bcm.edu;broad.mit.edu	37	12	110720572	110720572	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP2A2	NM_001681	exon3	c.191delT	p.I64fs	.	.	158	11	109	0	.	94
ATP4A	495	hgsc.bcm.edu	37	19	36048637	36048637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP4A	NM_000704	exon11	c.A1613G	p.E538G	.	.	155	8	127	0	.	91
ATP5G2	517	hgsc.bcm.edu	37	12	54063089	54063089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP5G2	NM_005176	exon4	c.T325C	p.S109P	.	.	69	3	62	0	.	91
ATP6AP1	537	hgsc.bcm.edu	37	X	153664091	153664091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP6AP1	NM_001183	exon10	c.T1267C	p.S423P	.	.	104	3	98	0	.	138
ATP6V1C2	245973	hgsc.bcm.edu	37	2	10894153	10894153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP6V1C2	NM_001039362	exon4	c.T244C	p.S82P	.	.	106	3	99	0	.	91
ATP7A	538	hgsc.bcm.edu;broad.mit.edu	37	X	77245318	77245318	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP7A	NM_000052	exon4	c.1200delA	p.S400fs	.	.	187	12	143	0	.	130
ATP9B	374868	bcgsc.ca	37	18	77105489	77105489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP9B	NM_198531	exon22	c.T2534C	p.V845A	.	.	68	4	67	0	.	93
ATPBD4	89978	hgsc.bcm.edu	37	15	35742950	35742950	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATPBD4	NM_080650	exon5	c.A441G	p.E147E	.	.	97	4	112	0	.	90
ATXN7L1	222255	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	105283324	105283324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATXN7L1	NM_020725	exon5	c.G823C	p.G275R	.	.	480	125	309	0	.	90
ATXN7L3	56970	hgsc.bcm.edu;bcgsc.ca	37	17	42273429	42273429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATXN7L3	NM_020218	exon6	c.A517G	p.R173G	.	.	77	4	95	0	.	68
AZI1	22994	hgsc.bcm.edu;broad.mit.edu	37	17	79172711	79172711	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AZI1	NM_014984	exon11	c.1253delC	p.P418fs	.	.	134	10	80	0	.	136
BAIAP2	10458	hgsc.bcm.edu;broad.mit.edu	37	17	79089623	79089623	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAIAP2	NM_001144888	exon14	c.1589delC	p.A530fs	.	.	133	11	84	0	.	90
BAZ2A	11176	hgsc.bcm.edu;bcgsc.ca	37	12	56997486	56997486	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAZ2A	NM_013449	exon18	c.3045-2A>G	.	.	.	77	4	67	0	.	22
BAZ2B	29994	hgsc.bcm.edu	37	2	160229687	160229687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAZ2B	NM_013450	exon27	c.A4082G	p.Y1361C	.	.	100	4	83	0	.	94
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu	37	2	160182380	160182380	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAZ2B	NM_013450	exon35	c.5993delA	p.K1998fs	.	.	175	13	136	0	.	94
BBS9	27241	hgsc.bcm.edu;broad.mit.edu	37	7	33217199	33217199	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BBS9	NM_014451	exon5	c.438delA	p.V146fs	.	.	99	11	75	0	.	230
BBX	56987	hgsc.bcm.edu;broad.mit.edu	37	3	107497314	107497314	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BBX	NM_001142568	exon13	c.2151delA	p.R717fs	.	.	277	20	189	0	.	94
BCAR1	9564	hgsc.bcm.edu;bcgsc.ca	37	16	75269535	75269535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCAR1	NM_001170714	exon6	c.C1400A	p.P467Q	.	.	153	10	134	0	.	1145
BCAR1	9564	hgsc.bcm.edu;broad.mit.edu	37	16	75269533	75269533	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCAR1	NM_001170714	exon6	c.1402delG	p.A468fs	.	.	153	11	134	0	.	1145
BCAS1	8537	hgsc.bcm.edu;broad.mit.edu	37	20	52645367	52645367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCAS1	NM_003657	exon4	c.287delT	p.F96fs	.	.	140	10	119	0	.	652
BCKDHB	594	bcgsc.ca	37	6	81053433	81053433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCKDHB	NM_000056	exon10	c.A1091G	p.D364G	.	.	202	6	152	0	.	90
BCL7A	605	hgsc.bcm.edu;broad.mit.edu	37	12	122473237	122473237	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCL7A	NM_020993	exon3	c.175delA	p.K59fs	.	.	219	13	190	0	.	685
BDP1	55814	hgsc.bcm.edu;broad.mit.edu	37	5	70806693	70806693	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BDP1	NM_018429	exon17	c.3774delA	p.G1258fs	.	.	176	11	71	0	.	92
BEND3	57673	hgsc.bcm.edu;broad.mit.edu	37	6	107389947	107389947	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BEND3	NM_001080450	exon5	c.2448delA	p.K816fs	.	.	232	14	120	0	.	71
BET3L	100128327	hgsc.bcm.edu;broad.mit.edu	37	6	116818135	116818135	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001139444	exon5	c.528delA	p.K176fs	.	.	208	14	148	0	.	.
BICC1	80114	broad.mit.edu;bcgsc.ca	37	10	60558817	60558817	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BICC1	NM_001080512	exon12	c.1530delT	p.G510fs	.	.	67	7	74	0	.	72
BIRC2	329	hgsc.bcm.edu;broad.mit.edu	37	11	102221110	102221110	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BIRC2	NM_001256163	exon2	c.525delC	p.N175fs	.	.	135	11	86	0	.	660
BNIPL	149428	hgsc.bcm.edu	37	1	151019162	151019162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BNIPL	NM_138278	exon10	c.A1073G	p.X358W	.	.	123	3	90	0	.	227
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu	37	4	13601642	13601642	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_148894	exon10	c.6882delC	p.S2294fs	.	.	180	11	170	0	.	.
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu	37	4	13602811	13602811	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_148894	exon10	c.5713delG	p.D1905fs	.	.	151	10	153	0	.	.
BPTF	2186	hgsc.bcm.edu;broad.mit.edu	37	17	65955903	65955903	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BPTF	NM_182641	exon24	c.8173delA	p.K2725fs	.	.	183	12	116	0	.	94
BRAT1	221927	hgsc.bcm.edu;broad.mit.edu	37	7	2583461	2583461	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRAT1	NM_152743	exon5	c.566delG	p.G189fs	.	.	166	10	117	0	.	229
BRD2	6046	hgsc.bcm.edu;bcgsc.ca	37	6	32945598	32945598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRD2	NM_005104	exon9	c.T1394C	p.V465A	.	.	291	19	205	0	.	398
BRE	9577	hgsc.bcm.edu	37	2	28210936	28210936	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRE	NM_199191	exon4	c.A282G	p.P94P	.	.	60	3	45	0	.	228
BRSK1	84446	bcgsc.ca	37	19	55812935	55812935	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRSK1	NM_032430	exon8	c.734delG	p.R245fs	.	.	54	6	69	0	.	759
BTBD7	55727	hgsc.bcm.edu	37	14	93712578	93712578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BTBD7	NM_001002860	exon10	c.A2176G	p.T726A	.	.	130	5	113	0	.	91
BUB1	699	hgsc.bcm.edu;broad.mit.edu	37	2	111430402	111430402	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BUB1	NM_004336	exon4	c.258delT	p.F86fs	.	.	123	10	125	0	.	1060
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu	37	17	56393388	56393388	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BZRAP1	NM_004758	exon16	c.2094delT	p.F698fs	.	.	262	19	175	0	.	229
BZW2	28969	bcgsc.ca	37	7	16744247	16744247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BZW2	NM_014038	exon11	c.T1184C	p.L395P	.	.	167	5	79	0	.	92
C11orf30	56946	hgsc.bcm.edu	37	11	76255832	76255832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C11orf30	NM_020193	exon19	c.T3239C	p.L1080P	.	.	64	3	55	0	.	232
C11orf30	56946	hgsc.bcm.edu;broad.mit.edu	37	11	76257129	76257129	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C11orf30	NM_020193	exon20	c.3562delC	p.P1188fs	.	.	180	11	139	0	.	232
C11orf54	28970	hgsc.bcm.edu;broad.mit.edu	37	11	93492928	93492928	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C11orf54	NM_014039	exon7	c.528delC	p.C176fs	.	.	166	11	103	0	.	90
C12orf50	160419	hgsc.bcm.edu	37	12	88383079	88383079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C12orf50	NM_152589	exon8	c.A662G	p.E221G	.	.	60	2	44	0	.	93
C12orf66	144577	hgsc.bcm.edu	37	12	64609570	64609570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C12orf66	NM_152440	exon2	c.A409G	p.M137V	.	.	117	4	117	0	.	515
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu	37	14	23457145	23457145	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C14orf93	NM_021944	exon6	c.1164delA	p.K388fs	.	.	148	11	116	0	.	91
C15orf55	256646	bcgsc.ca	37	15	34640379	34640379	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C15orf55	NM_175741	exon2	c.G226C	p.G76R	.	.	99	6	98	0	.	206
C15orf59	388135	broad.mit.edu;bcgsc.ca	37	15	74032267	74032267	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C15orf59	NM_001039614	exon2	c.873delG	p.G291fs	.	.	70	7	75	0	.	91
C16orf89	146556	broad.mit.edu;bcgsc.ca	37	16	5112564	5112564	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C16orf89	NM_001098514	exon2	c.220delA	p.S74fs	.	.	89	9	120	0	.	92
C17orf47	284083	bcgsc.ca	37	17	56621288	56621288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C17orf47	NM_001038704	exon1	c.G260A	p.G87E	.	.	288	12	180	4	.	135
C17orf47	284083	hgsc.bcm.edu;broad.mit.edu	37	17	56620577	56620577	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C17orf47	NM_001038704	exon1	c.971delC	p.P324fs	.	.	182	11	165	0	.	135
C17orf85	55421	hgsc.bcm.edu;broad.mit.edu	37	17	3716454	3716454	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C17orf85	NM_001114118	exon13	c.1747delG	p.A583fs	.	.	152	13	209	0	.	91
C19orf12	83636	hgsc.bcm.edu;broad.mit.edu	37	19	30193879	30193879	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C19orf12	NM_001031726	exon3	c.199delG	p.A67fs	.	.	199	16	190	0	.	204
C19orf44	84167	hgsc.bcm.edu;broad.mit.edu	37	19	16612295	16612295	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C19orf44	NM_032207	exon2	c.692delA	p.E231fs	.	.	119	11	95	0	.	90
C1orf172	126695	hgsc.bcm.edu;broad.mit.edu	37	1	27278443	27278443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C1orf172	NM_152365	exon2	c.429delC	p.P143fs	.	.	357	22	184	0	.	154
C1orf64	149563	hgsc.bcm.edu;broad.mit.edu	37	1	16332618	16332618	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C1orf64	NM_178840	exon2	c.287delC	p.T96fs	.	.	152	10	105	0	.	153
C1orf94	84970	hgsc.bcm.edu	37	1	34643426	34643426	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C1orf94	NM_001134734	exon1	c.T36C	p.G12G	.	.	119	5	80	0	.	90
C1QTNF3	114899	hgsc.bcm.edu;broad.mit.edu	37	5	34035781	34035781	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C1QTNF3	NM_181435	exon2	c.386delC	p.P129fs	.	.	155	10	96	0	.	90
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu	37	2	29293880	29293880	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C2orf71	NM_001029883	exon1	c.3248delC	p.P1083fs	.	.	104	10	57	0	.	91
C3orf30	152405	hgsc.bcm.edu;broad.mit.edu	37	3	118867142	118867142	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C3orf30	NM_152539	exon2	c.1514delA	p.E505fs	.	.	280	18	172	0	.	92
C4BPA	722	hgsc.bcm.edu	37	1	207317164	207317164	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C4BPA	NM_000715	exon11	c.T1446C	p.A482A	.	.	126	4	94	0	.	154
C4orf21	55345	broad.mit.edu;bcgsc.ca	37	4	113553090	113553090	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C4orf21	NM_018392	exon3	c.98delA	p.N33fs	.	.	59	7	108	0	.	90
C6orf58	352999	hgsc.bcm.edu	37	6	127902409	127902409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C6orf58	NM_001010905	exon4	c.T656C	p.I219T	.	.	59	2	43	0	.	90
C7orf10	79783	hgsc.bcm.edu;broad.mit.edu	37	7	40899967	40899967	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C7orf10	NM_001193311	exon15	c.1305delG	p.P435fs	.	.	239	18	170	0	.	24
C7orf31	136895	hgsc.bcm.edu;broad.mit.edu	37	7	25200833	25200833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C7orf31	NM_138811	exon4	c.358delA	p.S120fs	.	.	280	20	181	0	.	90
C9orf156	51531	hgsc.bcm.edu;broad.mit.edu	37	9	100672401	100672401	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C9orf156	NM_016481	exon4	c.907delG	p.A303fs	.	.	181	12	141	0	.	90
C9orf171	389799	hgsc.bcm.edu	37	9	135374145	135374145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C9orf171	NM_207417	exon3	c.C367T	p.L123F	.	.	52	5	51	0	.	157
C9orf24	84688	hgsc.bcm.edu	37	9	34385753	34385753	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C9orf24	NM_032596	exon2	c.T162C	p.H54H	.	.	96	4	95	0	.	91
CAAP1	79886	hgsc.bcm.edu;broad.mit.edu	37	9	26886160	26886160	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_024828	exon3	c.531delA	p.K177fs	.	.	200	12	194	0	.	.
CACNA1B	774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140772543	140772543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNA1B	NM_001243812	exon1	c.C158T	p.A53V	.	.	170	75	98	0	.	138
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu	37	1	181701779	181701779	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNA1E	NM_001205293	exon20	c.2557delG	p.G853fs	.	.	252	15	156	0	.	95
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu	37	X	49066137	49066137	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNA1F	NM_005183	exon41	c.4806delA	p.K1602fs	.	.	125	11	93	0	.	176
CACNB4	785	hgsc.bcm.edu;broad.mit.edu	37	2	152709963	152709963	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNB4	NM_001145798	exon12	c.1115delC	p.P372fs	.	.	117	10	89	0	.	24
CAMSAP2	23271	hgsc.bcm.edu;broad.mit.edu	37	1	200818368	200818368	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_203459	exon11	c.2471delA	p.Q824fs	.	.	197	12	100	0	.	.
CAMTA2	23125	bcgsc.ca	37	17	4883755	4883755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CAMTA2	NM_001171167	exon9	c.A931G	p.T311A	.	.	70	5	89	1	.	91
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu	37	6	44145022	44145022	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CAPN11	NM_007058	exon12	c.1281delG	p.E427fs	.	.	175	11	121	0	.	136
CARD11	84433	bcgsc.ca	37	7	2946463	2946463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CARD11	NM_032415	exon25	c.C3274G	p.R1092G	.	.	197	7	151	0	.	870
CASC4	113201	hgsc.bcm.edu;broad.mit.edu	37	15	44673029	44673029	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CASC4	NM_138423	exon8	c.927delC	p.N309fs	.	.	156	13	130	0	.	91
CASK	8573	hgsc.bcm.edu;broad.mit.edu	37	X	41420817	41420817	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CASK	NM_001126054	exon17	c.1663delA	p.M555fs	.	.	158	12	187	0	.	616
CAV2	858	hgsc.bcm.edu;broad.mit.edu	37	7	116140387	116140387	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CAV2	NM_001233	exon2	c.224delC	p.A75fs	.	.	157	11	101	0	.	90
CBFB	865	hgsc.bcm.edu	37	16	67116231	67116231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CBFB	NM_001755	exon5	c.T515C	p.L172P	.	.	98	4	86	0	.	721
CBX2	84733	hgsc.bcm.edu	37	17	77755868	77755868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CBX2	NM_032647	exon4	c.T556C	p.S186P	.	.	131	4	72	0	.	90
CBX4	8535	hgsc.bcm.edu	37	17	77812826	77812826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CBX4	NM_003655	exon2	c.A97G	p.R33G	.	.	92	3	54	0	.	228
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu	37	19	14031386	14031386	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CC2D1A	NM_017721	exon13	c.1373delC	p.A458fs	.	.	193	13	184	0	.	90
CCDC109B	55013	hgsc.bcm.edu;broad.mit.edu	37	4	110605773	110605773	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC109B	NM_017918	exon6	c.787delT	p.F263fs	.	.	107	10	156	0	.	90
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu	37	4	186382237	186382237	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC110	NM_152775	exon5	c.314delA	p.N105fs	.	.	154	12	139	0	.	90
CCDC136	64753	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128455707	128455707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC136	NM_022742	exon16	c.A3085C	p.K1029Q	.	.	146	73	102	0	.	24
CCDC144A	9720	broad.mit.edu;bcgsc.ca	37	17	16676005	16676005	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014695	exon17	c.4233delT	p.P1411fs	.	.	557	19	764	2	.	.
CCDC144B	284047	bcgsc.ca	37	17	18486814	18486814	+	RNA	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC144B	.	.	.	.	.	.	638	31	591	0	.	70
CCDC144B	284047	bcgsc.ca	37	17	18498061	18498061	+	RNA	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC144B	.	.	.	.	.	.	196	29	98	2	.	70
CCDC147	159686	hgsc.bcm.edu	37	10	106121791	106121791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC147	NM_001008723	exon3	c.A302G	p.K101R	.	.	90	4	56	0	.	71
CCDC170	80129	hgsc.bcm.edu;broad.mit.edu	37	6	151907220	151907220	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_025059	exon7	c.1289delA	p.Q430fs	.	.	146	12	75	0	.	.
CCDC17	149483	hgsc.bcm.edu;broad.mit.edu	37	1	46088658	46088658	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC17	NM_001114938	exon4	c.625delG	p.A209fs	.	.	189	13	98	0	.	23
CCDC47	57003	hgsc.bcm.edu;broad.mit.edu	37	17	61831827	61831827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC47	NM_020198	exon9	c.1000delT	p.S334fs	.	.	331	20	247	0	.	90
CCDC64B	146439	hgsc.bcm.edu	37	16	3079412	3079412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001103175	exon6	c.A976G	p.T326A	.	.	57	3	32	0	.	.
CCDC67	159989	hgsc.bcm.edu;broad.mit.edu	37	11	93104240	93104240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC67	NM_181645	exon7	c.583delA	p.K195fs	.	.	245	16	153	0	.	91
CCDC69	26112	hgsc.bcm.edu;broad.mit.edu	37	5	150563972	150563972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC69	NM_015621	exon8	c.646delA	p.I216fs	.	.	233	14	141	0	.	92
CCDC7	221016	hgsc.bcm.edu;broad.mit.edu	37	10	32832279	32832279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC7	NM_145023	exon13	c.1045delA	p.K349fs	.	.	233	17	127	0	.	90
CCDC83	220047	hgsc.bcm.edu;broad.mit.edu	37	11	85622356	85622356	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC83	NM_173556	exon8	c.705delA	p.L235fs	.	.	184	11	134	0	.	91
CCNK	8812	hgsc.bcm.edu	37	14	99976694	99976694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001099402	exon11	c.T1318C	p.S440P	.	.	139	5	130	0	.	.
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu	37	12	7527201	7527201	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CD163L1	NM_174941	exon13	c.3246delC	p.A1082fs	.	.	164	10	220	0	.	100
CD2AP	23607	bcgsc.ca	37	6	47576949	47576949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CD2AP	NM_012120	exon16	c.A1723G	p.T575A	.	.	163	6	114	0	.	92
CDC42	998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22413358	22413358	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDC42	NM_001791	exon5	c.485delA	p.Q162fs	.	.	99	51	48	0	.	1084
CDC42BPB	9578	hgsc.bcm.edu	37	14	103414077	103414077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDC42BPB	NM_006035	exon27	c.A3512G	p.D1171G	.	.	96	4	65	0	.	581
CDCA3	83461	hgsc.bcm.edu;broad.mit.edu	37	12	6958537	6958537	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDCA3	NM_031299	exon5	c.601delC	p.L201fs	.	.	204	13	248	0	.	90
CDCA4	55038	hgsc.bcm.edu;broad.mit.edu	37	14	105477749	105477749	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDCA4	NM_017955	exon2	c.518delA	p.N173fs	.	.	177	12	133	0	.	91
CDH10	1008	hgsc.bcm.edu;broad.mit.edu	37	5	24487952	24487952	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDH10	NM_006727	exon12	c.2187delC	p.P729fs	.	.	133	10	80	0	.	253
CDH11	1009	hgsc.bcm.edu;broad.mit.edu	37	16	64981570	64981570	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDH11	NM_001797	exon13	c.2327delG	p.G776fs	.	.	155	13	180	0	.	852
CDH23	64072	bcgsc.ca	37	10	73270907	73270907	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDH23	NM_052836	exon6	c.G367C	p.G123R	.	.	130	5	126	0	.	563
CDH26	60437	hgsc.bcm.edu	37	20	58547020	58547020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDH26	NM_177980	exon4	c.T235C	p.F79L	.	.	70	3	104	0	.	93
CDH9	1007	hgsc.bcm.edu;broad.mit.edu	37	5	26886130	26886130	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDH9	NM_016279	exon10	c.1575delT	p.F525fs	.	.	165	14	99	0	.	99
CDHR4	389118	hgsc.bcm.edu	37	3	49836290	49836290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001007540	exon4	c.T464C	p.L155P	.	.	142	4	115	0	.	.
CDHR4	389118	hgsc.bcm.edu;broad.mit.edu	37	3	49830724	49830724	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001007540	exon13	c.1644delC	p.P548fs	.	.	110	10	52	0	.	.
CDHR5	53841	hgsc.bcm.edu;broad.mit.edu	37	11	618994	618994	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDHR5	NM_021924	exon13	c.1565delC	p.P522fs	.	.	171	11	95	0	.	90
CECR1	51816	hgsc.bcm.edu;bcgsc.ca	37	22	17662863	17662863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CECR1	NM_017424	exon8	c.T1289C	p.M430T	.	.	72	4	64	0	.	91
CELA2B	51032	bcgsc.ca	37	1	15808874	15808874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CELA2B	NM_015849	exon4	c.C342A	p.D114E	.	.	331	10	179	0	.	91
CELSR2	1952	ucsc.edu;bcgsc.ca	37	1	109813221	109813221	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CELSR2	NM_001408	exon24	c.A7482G	p.T2494T	.	.	147	90	94	0	.	526
CENPA	1058	hgsc.bcm.edu	37	2	27016084	27016084	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPA	NM_001809	exon4	c.T360C	p.T120T	.	.	99	4	82	0	.	181
CENPB	1059	bcgsc.ca	37	20	3765548	3765548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPB	NM_001810	exon1	c.A1583G	p.D528G	.	.	223	6	215	0	.	227
CENPE	1062	hgsc.bcm.edu	37	4	104066439	104066439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPE	NM_001813	exon32	c.A4625G	p.E1542G	.	.	87	3	119	0	.	277
CENPJ	55835	hgsc.bcm.edu;bcgsc.ca	37	13	25480336	25480336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPJ	NM_018451	exon7	c.T1840C	p.S614P	.	.	87	6	103	0	.	92
CEP112	201134	hgsc.bcm.edu;broad.mit.edu	37	17	64023620	64023620	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP112	NM_001199165	exon16	c.1655delA	p.K552fs	.	.	311	19	169	0	.	90
CEP164	22897	hgsc.bcm.edu	37	11	117222658	117222658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP164	NM_001271933	exon4	c.A347G	p.K116R	.	.	70	6	38	0	.	69
CEP170	9859	broad.mit.edu;bcgsc.ca	37	1	243362382	243362382	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP170	NM_001042405	exon7	c.611delA	p.N204fs	.	.	216	12	136	0	.	93
CEP250	11190	hgsc.bcm.edu	37	20	34092346	34092346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP250	NM_007186	exon30	c.A6149G	p.E2050G	.	.	79	4	71	0	.	27
CEP44	80817	hgsc.bcm.edu;broad.mit.edu	37	4	175224892	175224892	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP44	NM_001040157	exon5	c.276delA	p.T92fs	.	.	179	11	183	0	.	68
CEP57	9702	bcgsc.ca	37	11	95564261	95564261	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP57	NM_014679	exon11	c.A1344G	p.R448R	.	.	201	6	118	0	.	91
CEP76	79959	hgsc.bcm.edu	37	18	12673464	12673464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP76	NM_024899	exon12	c.A1880G	p.D627G	.	.	150	5	126	0	.	90
CEP85L	387119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	118803074	118803074	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001178035	exon9	c.1622delA	p.N541fs	.	.	122	12	75	0	.	.
CERS3	204219	hgsc.bcm.edu;broad.mit.edu	37	15	101009634	101009634	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_178842	exon11	c.794delT	p.F265fs	.	.	142	10	152	0	.	.
CERS5	91012	hgsc.bcm.edu	37	12	50532384	50532384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_147190	exon5	c.A509G	p.D170G	.	.	110	4	101	0	.	.
CES3	23491	hgsc.bcm.edu;broad.mit.edu	37	16	66995238	66995238	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CES3	NM_024922	exon1	c.28delG	p.G10fs	.	.	195	12	164	0	.	517
CFH	3075	bcgsc.ca	37	1	196654325	196654325	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CFH	NM_001014975	exon7	c.A922C	p.K308Q	.	.	393	9	245	0	.	566
CFL1	1072	hgsc.bcm.edu;broad.mit.edu	37	11	65622844	65622844	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CFL1	NM_005507	exon4	c.464delG	p.G155fs	.	.	251	15	168	0	.	90
CFL2	1073	hgsc.bcm.edu;broad.mit.edu	37	14	35182277	35182277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CFL2	NM_021914	exon3	c.377delA	p.K126fs	.	.	196	12	146	0	.	289
CHD1	1105	hgsc.bcm.edu	37	5	98194094	98194094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD1	NM_001270	exon34	c.A4577G	p.D1526G	.	.	171	4	111	0	.	274
CHD2	1106	hgsc.bcm.edu;broad.mit.edu	37	15	93540530	93540530	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD2	NM_001271	exon30	c.3782delG	p.W1261fs	.	.	162	11	160	0	.	229
CHD3	1107	hgsc.bcm.edu	37	17	7802659	7802659	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD3	NM_001005271	exon15	c.2521-2A>G	.	.	.	86	3	120	0	.	228
CHD4	1108	broad.mit.edu;bcgsc.ca	37	12	6710676	6710676	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD4	NM_001273	exon6	c.578delA	p.N193fs	.	.	46	7	86	0	.	228
CHD6	84181	hgsc.bcm.edu	37	20	40084597	40084597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD6	NM_032221	exon19	c.A2852G	p.E951G	.	.	119	4	137	0	.	238
CHD9	80205	hgsc.bcm.edu;broad.mit.edu	37	16	53348351	53348351	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD9	NM_025134	exon35	c.7237delA	p.K2413fs	.	.	171	13	151	0	.	272
CHDH	55349	hgsc.bcm.edu;broad.mit.edu	37	3	53852175	53852175	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHDH	NM_018397	exon9	c.1414delA	p.I472fs	.	.	155	11	109	0	.	91
CHEK1	1111	hgsc.bcm.edu;broad.mit.edu	37	11	125514123	125514123	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHEK1	NM_001244846	exon10	c.1061delT	p.L354fs	.	.	150	10	100	0	.	1509
CHMP5	51510	hgsc.bcm.edu;bcgsc.ca	37	9	33271180	33271180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHMP5	NM_016410	exon5	c.A346G	p.M116V	.	.	82	6	64	0	.	91
CHRNB4	1143	hgsc.bcm.edu;broad.mit.edu	37	15	78921420	78921420	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHRNB4	NM_000750	exon5	c.1227delC	p.P409fs	.	.	141	10	132	0	.	90
CHRNG	1146	hgsc.bcm.edu	37	2	233408309	233408309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHRNG	NM_005199	exon9	c.T935C	p.L312P	.	.	169	5	129	0	.	90
CHST2	9435	hgsc.bcm.edu	37	3	142840446	142840446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHST2	NM_004267	exon2	c.T788C	p.L263P	.	.	122	4	90	0	.	93
CLCA2	9635	hgsc.bcm.edu	37	1	86900229	86900229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLCA2	NM_006536	exon6	c.A773G	p.H258R	.	.	122	5	75	0	.	155
CLCA2	9635	hgsc.bcm.edu	37	1	86920818	86920818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLCA2	NM_006536	exon14	c.G2440A	p.D814N	.	.	100	4	72	0	.	155
CLDN20	49861	bcgsc.ca	37	6	155596902	155596902	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLDN20	NM_001001346	exon2	c.G49C	p.G17R	.	.	239	6	177	0	.	90
CLEC16A	23274	hgsc.bcm.edu	37	16	11272336	11272336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLEC16A	NM_015226	exon23	c.T2951C	p.V984A	.	.	94	2	67	0	.	92
CLEC18A	348174	broad.mit.edu;bcgsc.ca	37	16	69985289	69985289	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLEC18A	NM_001271197	exon2	c.20delC	p.S7fs	.	.	408	9	323	0	.	68
CLEC1B	51266	hgsc.bcm.edu	37	12	10147781	10147781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLEC1B	NM_016509	exon5	c.A503G	p.E168G	.	.	36	2	56	0	.	90
CLHC1	130162	hgsc.bcm.edu	37	2	55445059	55445059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152385	exon4	c.A253G	p.I85V	.	.	79	4	95	0	.	.
CLK4	57396	hgsc.bcm.edu;broad.mit.edu	37	5	178032333	178032333	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLK4	NM_020666	exon11	c.1185delC	p.P395fs	.	.	216	13	121	0	.	359
CLMP	79827	hgsc.bcm.edu	37	11	122968546	122968546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLMP	NM_024769	exon2	c.A143G	p.D48G	.	.	128	3	97	0	.	91
CLSPN	63967	hgsc.bcm.edu;broad.mit.edu	37	1	36228077	36228077	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLSPN	NM_022111	exon5	c.750delA	p.K250fs	.	.	143	11	102	0	.	293
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu	37	3	140178605	140178605	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLSTN2	NM_022131	exon7	c.1216delA	p.K406fs	.	.	214	15	106	0	.	157
CLTCL1	8218	ucsc.edu;bcgsc.ca	37	22	19189003	19189003	+	Missense_Mutation	SNP	A	A	C	rs112507727		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLTCL1	NM_001835	exon23	c.T3602G	p.V1201G	.	.	102	0	108	0	A|0.500;C|0.500	230
CNBD2	140894	broad.mit.edu;bcgsc.ca	37	20	34596315	34596315	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_080834	exon9	c.1067delG	p.W356fs	.	.	74	8	83	0	.	.
CNEP1R1	255919	hgsc.bcm.edu;broad.mit.edu	37	16	50067341	50067341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_153261	exon5	c.256delT	p.F86fs	.	.	173	11	148	0	.	.
CNGA1	1259	hgsc.bcm.edu;broad.mit.edu	37	4	47939084	47939084	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNGA1	NM_001142564	exon10	c.1634delA	p.K545fs	.	.	181	11	166	0	.	92
CNGA4	1262	hgsc.bcm.edu	37	11	6265177	6265177	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNGA4	NM_001037329	exon6	c.1268-2A>G	.	.	.	46	4	32	0	.	91
CNIH2	254263	hgsc.bcm.edu;broad.mit.edu	37	11	66050215	66050215	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNIH2	NM_182553	exon3	c.162delA	p.L54fs	.	.	180	11	108	0	.	90
CNOT1	23019	hgsc.bcm.edu	37	16	58608980	58608980	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNOT1	NM_206999	exon15	c.T1758C	p.A586A	.	.	91	4	82	0	.	95
CNOT1	23019	hgsc.bcm.edu;bcgsc.ca	37	16	58562491	58562491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNOT1	NM_016284	exon44	c.A6341G	p.H2114R	.	.	71	4	61	0	.	95
CNOT3	4849	hgsc.bcm.edu;broad.mit.edu	37	19	54647778	54647778	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNOT3	NM_014516	exon6	c.295delA	p.K99fs	.	.	123	10	107	0	.	93
CNTN6	27255	hgsc.bcm.edu	37	3	1367497	1367497	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNTN6	NM_014461	exon9	c.947-2A>G	.	.	.	66	4	42	0	.	345
CNTNAP2	26047	hgsc.bcm.edu;bcgsc.ca	37	7	147844667	147844667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNTNAP2	NM_014141	exon17	c.A2639G	p.D880G	.	.	118	5	87	0	.	100
CNTNAP3B	728577	bcgsc.ca	37	9	43815913	43815913	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001201380	exon5	c.667delC	p.H223fs	.	.	831	6	726	0	.	.
CNTNAP3B	728577	broad.mit.edu;bcgsc.ca	37	9	43815911	43815911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001201380	exon5	c.665delT	p.L222fs	.	.	824	7	715	0	.	.
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu	37	16	76486452	76486452	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNTNAP4	NM_138994	exon7	c.900delT	p.T300fs	.	.	127	10	139	0	.	70
COBL	23242	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51287588	51287588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COBL	NM_015198	exon2	c.A95C	p.H32P	.	.	182	79	118	1	.	95
COG2	22796	hgsc.bcm.edu;broad.mit.edu	37	1	230800279	230800279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG2	NM_007357	exon5	c.431delA	p.E144fs	.	.	185	13	119	0	.	90
COG4	25839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70548316	70548316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG4	NM_015386	exon4	c.G466A	p.E156K	.	.	107	24	101	0	.	90
COG6	57511	hgsc.bcm.edu	37	13	40297514	40297514	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG6	NM_001145079	exon16	c.T1629G	p.Y543X	.	.	83	2	98	0	.	227
COG7	91949	hgsc.bcm.edu	37	16	23404640	23404640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG7	NM_153603	exon15	c.T1916C	p.L639P	.	.	66	4	51	0	.	90
COL16A1	1307	bcgsc.ca	37	1	32158375	32158375	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL16A1	NM_001856	exon14	c.C1106G	p.P369R	.	.	235	8	136	0	.	98
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu	37	10	105819448	105819448	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL17A1	NM_000494	exon15	c.1170delA	p.K390fs	.	.	251	16	178	0	.	95
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu	37	2	189852856	189852856	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL3A1	NM_000090	exon6	c.578delC	p.S193fs	.	.	325	20	280	0	.	581
COL4A1	1282	hgsc.bcm.edu	37	13	110827094	110827094	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL4A1	NM_001845	exon38	c.A3201G	p.G1067G	.	.	95	4	62	0	.	654
COL4A3	1285	bcgsc.ca	37	2	228111436	228111436	+	Silent	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL4A3	NM_000091	exon7	c.G423C	p.L141L	.	.	200	9	141	0	.	132
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu	37	9	137593113	137593113	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL5A1	NM_000093	exon4	c.588delC	p.H196fs	.	.	192	13	181	0	.	524
COL5A2	1290	hgsc.bcm.edu	37	2	189904144	189904144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL5A2	NM_000393	exon51	c.A3779G	p.D1260G	.	.	138	5	119	0	.	92
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu	37	19	10087955	10087955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL5A3	NM_015719	exon44	c.3238delG	p.D1080fs	.	.	132	10	116	0	.	99
COL6A6	131873	hgsc.bcm.edu	37	3	130300684	130300684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL6A6	NM_001102608	exon8	c.T3827C	p.L1276P	.	.	149	3	88	0	.	76
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu	37	1	40776921	40776921	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL9A2	NM_001852	exon11	c.557delC	p.P186fs	.	.	150	11	78	0	.	92
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu	37	20	61450582	61450582	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL9A3	NM_001853	exon4	c.192delG	p.K64fs	.	.	202	13	182	0	.	514
CORIN	10699	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	47695047	47695047	+	Missense_Mutation	SNP	C	C	T	rs143738568	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CORIN	NM_006587	exon6	c.G853A	p.G285R	.	.	127	48	100	0	C|1.000;G|0.000	91
CPD	1362	hgsc.bcm.edu	37	17	28791765	28791765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPD	NM_001304	exon21	c.T4076C	p.L1359P	.	.	97	5	80	0	.	92
CPO	130749	hgsc.bcm.edu;broad.mit.edu	37	2	207827247	207827247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPO	NM_173077	exon7	c.686delT	p.I229fs	.	.	147	11	141	0	.	154
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu	37	8	145619169	145619169	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPSF1	NM_013291	exon35	c.3944delC	p.P1315fs	.	.	275	17	87	0	.	91
CPSF6	11052	hgsc.bcm.edu;broad.mit.edu	37	12	69650513	69650513	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPSF6	NM_007007	exon4	c.411delA	p.S137fs	.	.	195	13	180	0	.	226
CPSF6	11052	hgsc.bcm.edu;broad.mit.edu	37	12	69652587	69652587	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPSF6	NM_007007	exon6	c.912delC	p.G304fs	.	.	135	11	80	0	.	226
CR1	1378	hgsc.bcm.edu	37	1	207700165	207700165	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CR1	NM_000573	exon6	c.954delT	p.P318fs	.	.	18	11	5	0	.	93
CREB3L1	90993	bcgsc.ca	37	11	46342262	46342262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CREB3L1	NM_052854	exon12	c.A1526G	p.D509G	.	.	120	9	104	3	.	92
CREB3L4	148327	hgsc.bcm.edu;broad.mit.edu	37	1	153941909	153941909	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CREB3L4	NM_001255978	exon4	c.521delC	p.A174fs	.	.	166	10	92	0	.	91
CRELD1	78987	hgsc.bcm.edu;broad.mit.edu	37	3	9976237	9976237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CRELD1	NM_001077415	exon2	c.115delC	p.P39fs	.	.	168	11	143	0	.	91
CRELD2	79174	hgsc.bcm.edu;broad.mit.edu	37	22	50319089	50319089	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CRELD2	NM_001135101	exon10	c.1040delA	p.E347fs	.	.	137	10	123	0	.	90
CRTAC1	55118	hgsc.bcm.edu;broad.mit.edu	37	10	99640100	99640100	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CRTAC1	NM_001206528	exon14	c.1725delC	p.P575fs	.	.	153	10	147	0	.	95
CRTC3	64784	hgsc.bcm.edu	37	15	91185296	91185296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CRTC3	NM_022769	exon15	c.T1784C	p.L595P	.	.	163	4	173	0	.	393
CSAD	51380	hgsc.bcm.edu	37	12	53553669	53553669	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSAD	NM_001244706	exon7	c.519+2T>C	.	.	.	101	5	107	0	.	91
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu	37	1	115272999	115272999	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSDE1	NM_001242891	exon13	c.1374delA	p.K458fs	.	.	117	10	73	0	.	227
CSMD1	64478	bcgsc.ca	37	8	3226820	3226820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSMD1	NM_033225	exon19	c.2855delA	p.N952fs	.	.	52	6	88	0	.	86
CSMD2	114784	hgsc.bcm.edu	37	1	34071525	34071525	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSMD2	NM_052896	exon42	c.6287delG	p.R2096fs	.	.	171	12	85	0	.	103
CSNK1A1	1452	hgsc.bcm.edu;broad.mit.edu	37	5	148889476	148889476	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSNK1A1	NM_001025105	exon8	c.800delA	p.K267fs	.	.	226	15	75	0	.	846
CSNK2A1	1457	hgsc.bcm.edu	37	20	469379	469379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSNK2A1	NM_001895	exon10	c.A767G	p.D256G	.	.	111	4	73	0	.	791
CSTF2	1478	hgsc.bcm.edu	37	X	100078882	100078882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSTF2	NM_001325	exon5	c.T452C	p.V151A	.	.	74	3	53	0	.	131
CTAGE5	4253	hgsc.bcm.edu;broad.mit.edu	37	14	39788448	39788448	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTAGE5	NM_001247989	exon18	c.1511delA	p.E504fs	.	.	115	10	71	0	.	90
CTBP1	1487	hgsc.bcm.edu;broad.mit.edu	37	4	1206096	1206096	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTBP1	NM_001328	exon9	c.1255delC	p.H419fs	.	.	180	11	178	0	.	91
CTGF	1490	hgsc.bcm.edu;broad.mit.edu	37	6	132270568	132270568	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTGF	NM_001901	exon5	c.886delC	p.H296fs	.	.	180	14	103	0	.	90
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu	37	3	41266867	41266867	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTNNB1	NM_001098209	exon5	c.538delA	p.K180fs	.	.	183	12	124	0	.	24361
CTNND2	1501	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	11159822	11159822	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTNND2	NM_001332	exon12	c.C2025T	p.I675I	.	.	329	66	185	0	.	293
CTSA	5476	hgsc.bcm.edu;broad.mit.edu	37	20	44521908	44521908	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTSA	NM_000308	exon7	c.704delC	p.S235fs	.	.	155	10	157	0	.	91
CTXN2	399697	hgsc.bcm.edu;broad.mit.edu	37	15	48493577	48493577	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001145668	exon2	c.80delA	p.Q27fs	.	.	329	20	284	0	.	.
CUL1	8454	hgsc.bcm.edu;broad.mit.edu	37	7	148495734	148495734	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CUL1	NM_003592	exon20	c.2101delA	p.K701fs	.	.	164	10	128	0	.	226
CUL4B	8450	bcgsc.ca	37	X	119691848	119691848	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CUL4B	NM_003588	exon4	c.657delA	p.K219fs	.	.	48	6	65	0	.	227
CUL7	9820	hgsc.bcm.edu	37	6	43017756	43017756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CUL7	NM_001168370	exon6	c.A1766G	p.D589G	.	.	97	4	70	0	.	229
CWC15	51503	bcgsc.ca	37	11	94699509	94699509	+	RNA	SNP	A	A	T	rs75272814		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	261	20	248	2	.	.
CX3CR1	1524	hgsc.bcm.edu;broad.mit.edu	37	3	39307659	39307659	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CX3CR1	NM_001171174	exon2	c.438delT	p.F146fs	.	.	115	10	82	0	.	658
CXorf23	256643	bcgsc.ca	37	X	19983791	19983791	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CXorf23	NM_198279	exon3	c.A645G	p.G215G	.	.	144	6	157	0	.	130
CXorf30	645090	hgsc.bcm.edu;bcgsc.ca	37	X	36337383	36337383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CXorf30	NM_001098843	exon12	c.A742G	p.S248G	.	.	130	5	100	0	.	62
CXorf30	645090	hgsc.bcm.edu;broad.mit.edu	37	X	36379541	36379541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CXorf30	NM_001098843	exon16	c.1286delA	p.E429fs	.	.	162	10	135	0	.	62
CYC1	1537	hgsc.bcm.edu;broad.mit.edu	37	8	145150814	145150814	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYC1	NM_001916	exon2	c.208delG	p.G70fs	.	.	244	15	62	0	.	227
CYFIP2	26999	bcgsc.ca	37	5	156721863	156721863	+	Silent	SNP	T	T	C	rs200051515		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYFIP2	NM_001037332	exon4	c.T279C	p.I93I	.	.	325	3	209	2	.	22
CYFIP2	26999	bcgsc.ca	37	5	156721867	156721867	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYFIP2	NM_001037333	exon4	c.282+1A>C	.	.	.	325	31	206	11	.	22
CYP2C19	1557	hgsc.bcm.edu	37	10	96580336	96580336	+	Silent	SNP	A	A	G	rs17879239	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP2C19	NM_000769	exon6	c.A903G	p.T301T	.	.	99	4	115	0	A|0.996;G|0.004	95
CYP2D6	1565	broad.mit.edu;bcgsc.ca	37	22	42524939	42524939	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP2D6	NM_000106	exon4	c.513delC	p.P171fs	.	.	255	10	197	0	.	136
CYP2U1	113612	hgsc.bcm.edu	37	4	108866756	108866756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP2U1	NM_183075	exon2	c.T1121C	p.V374A	.	.	68	4	84	0	.	90
CYP39A1	51302	hgsc.bcm.edu	37	6	46604172	46604172	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP39A1	NM_016593	exon5	c.686delA	p.N229fs	.	.	145	11	96	0	.	91
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu	37	6	46605645	46605645	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP39A1	NM_016593	exon4	c.559delA	p.I187fs	.	.	168	10	120	0	.	91
CYP3A4	1576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99364063	99364063	+	Nonsense_Mutation	SNP	G	G	A	rs138105638		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP3A4	NM_017460	exon9	c.C802T	p.R268X	.	.	188	26	159	0	G|1.000;A|0.000	517
CYP4F12	66002	hgsc.bcm.edu	37	19	15807241	15807241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP4F12	NM_023944	exon12	c.T1316C	p.V439A	.	.	127	5	95	0	.	95
CYP4Z2P	163720	ucsc.edu	37	1	47325300	47325300	+	RNA	SNP	A	A	T	rs78661275		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	273	42	160	5	.	.
DCC	1630	hgsc.bcm.edu	37	18	50278698	50278698	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCC	NM_005215	exon2	c.A366G	p.G122G	.	.	163	3	146	0	.	225
DCDC2	51473	hgsc.bcm.edu;broad.mit.edu	37	6	24278359	24278359	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCDC2	NM_001195610	exon8	c.840delA	p.K280fs	.	.	232	16	149	0	.	91
DCHS1	8642	hgsc.bcm.edu	37	11	6653852	6653852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCHS1	NM_003737	exon6	c.A2891G	p.H964R	.	.	86	4	38	0	.	73
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu	37	11	6649903	6649903	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCHS1	NM_003737	exon13	c.5320delG	p.A1774fs	.	.	166	10	109	0	.	73
DCUN1D1	54165	hgsc.bcm.edu;bcgsc.ca	37	3	182665124	182665124	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCUN1D1	NM_020640	exon7	c.604-2A>G	.	.	.	63	4	36	0	.	91
DCX	1641	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	110574142	110574142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCX	NM_001195553	exon5	c.C936A	p.N312K	.	.	109	70	87	0	.	554
DDI2	84301	hgsc.bcm.edu	37	1	15959967	15959967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDI2	NM_032341	exon4	c.A539G	p.Q180R	.	.	118	3	67	0	.	44
DDX23	9416	hgsc.bcm.edu;broad.mit.edu	37	12	49224336	49224336	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX23	NM_004818	exon17	c.2379delC	p.P793fs	.	.	266	18	206	0	.	539
DDX24	57062	hgsc.bcm.edu	37	14	94519409	94519409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX24	NM_020414	exon8	c.A2243G	p.H748R	.	.	81	4	106	0	.	228
DDX4	54514	hgsc.bcm.edu;broad.mit.edu	37	5	55110940	55110940	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX4	NM_024415	exon20	c.1927delT	p.F643fs	.	.	471	29	302	0	.	227
DDX60	55601	hgsc.bcm.edu	37	4	169195111	169195111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX60	NM_017631	exon17	c.G2428T	p.V810L	.	.	88	6	82	0	.	25
DDX60	55601	hgsc.bcm.edu;broad.mit.edu	37	4	169223484	169223484	+	Frame_Shift_Del	DEL	A	A	-	rs34458540		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX60	NM_017631	exon6	c.690delT	p.F230fs	.	.	154	12	158	0	.	25
DDX60L	91351	broad.mit.edu;bcgsc.ca	37	4	169317230	169317230	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX60L	NM_001012967	exon27	c.3537delA	p.K1179fs	.	.	236	24	178	0	.	69
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu	37	4	169348237	169348237	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX60L	NM_001012967	exon14	c.1914delA	p.K638fs	.	.	135	10	153	0	.	69
DEK	7913	bcgsc.ca	37	6	18237664	18237664	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DEK	NM_003472	exon8	c.T846A	p.V282V	.	.	312	8	186	0	.	658
DENND4C	55667	hgsc.bcm.edu	37	9	19346888	19346888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DENND4C	NM_017925	exon22	c.C3974T	p.S1325F	.	.	72	3	36	0	.	92
DENND6A	201627	hgsc.bcm.edu	37	3	57644895	57644895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152678	exon8	c.A712G	p.T238A	.	.	94	4	67	0	.	.
DEPDC5	9681	hgsc.bcm.edu	37	22	32266729	32266729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DEPDC5	NM_001242896	exon34	c.A3484G	p.S1162G	.	.	148	4	143	0	.	519
DEPDC5	9681	hgsc.bcm.edu;bcgsc.ca	37	22	32215113	32215113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DEPDC5	NM_001242897	exon22	c.A1772G	p.Y591C	.	.	140	8	130	0	.	519
DGKA	1606	hgsc.bcm.edu	37	12	56346928	56346928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DGKA	NM_201554	exon22	c.T2047C	p.S683P	.	.	100	3	86	0	.	255
DGKA	1606	hgsc.bcm.edu;broad.mit.edu	37	12	56346858	56346858	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DGKA	NM_201554	exon22	c.1977delG	p.L659fs	.	.	152	10	182	0	.	255
DGKZ	8525	hgsc.bcm.edu;broad.mit.edu	37	11	46394213	46394213	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DGKZ	NM_001105540	exon13	c.1621delG	p.G541fs	.	.	132	10	51	0	.	676
DHRS4L2	317749	bcgsc.ca	37	14	24470691	24470691	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DHRS4L2	NM_198083	exon6	c.G630A	p.L210L	.	.	518	17	450	6	.	91
DHX16	8449	broad.mit.edu;bcgsc.ca	37	6	30627883	30627883	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DHX16	NM_003587	exon10	c.1681delT	p.S561fs	.	.	80	8	74	0	.	228
DHX35	60625	hgsc.bcm.edu;broad.mit.edu	37	20	37650554	37650554	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DHX35	NM_021931	exon16	c.1569delC	p.V523fs	.	.	180	12	189	0	.	226
DHX8	1659	hgsc.bcm.edu	37	17	41582144	41582144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DHX8	NM_004941	exon12	c.A1679G	p.E560G	.	.	116	3	97	0	.	229
DHX8	1659	hgsc.bcm.edu;broad.mit.edu	37	17	41582118	41582118	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DHX8	NM_004941	exon12	c.1653delA	p.G551fs	.	.	119	10	84	0	.	229
DIAPH2	1730	hgsc.bcm.edu	37	X	96396689	96396689	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DIAPH2	NM_007309	exon22	c.2615delA	p.Q872fs	.	.	148	11	159	0	.	133
DIAPH3	81624	bcgsc.ca	37	13	60435666	60435666	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DIAPH3	NM_001042517	exon22	c.2612delA	p.K871fs	.	.	48	6	104	0	.	516
DIAPH3	81624	bcgsc.ca	37	13	60584705	60584705	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DIAPH3	NM_001042517	exon8	c.870delA	p.K290fs	.	.	37	4	63	0	.	516
DIDO1	11083	hgsc.bcm.edu	37	20	61513462	61513462	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DIDO1	NM_001193369	exon16	c.A3846G	p.A1282A	.	.	105	5	75	0	.	96
DISP1	84976	hgsc.bcm.edu;bcgsc.ca	37	1	223177971	223177971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DISP1	NM_032890	exon10	c.C3232A	p.R1078S	.	.	239	22	131	0	.	68
DKK4	27121	broad.mit.edu;bcgsc.ca	37	8	42231632	42231632	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DKK4	NM_014420	exon4	c.661delA	p.I221X	.	.	71	7	121	0	.	659
DLD	1738	hgsc.bcm.edu;broad.mit.edu	37	7	107555996	107555996	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DLD	NM_000108	exon9	c.730delT	p.F244fs	.	.	156	13	113	0	.	226
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu	37	14	55625371	55625371	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DLGAP5	NM_014750	exon14	c.1742delA	p.N581fs	.	.	208	13	181	0	.	92
DLK1	8788	hgsc.bcm.edu;broad.mit.edu	37	14	101200644	101200644	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DLK1	NM_003836	exon5	c.563delT	p.I188fs	.	.	215	13	192	0	.	949
DLL1	28514	hgsc.bcm.edu	37	6	170592565	170592565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DLL1	NM_005618	exon9	c.A1802G	p.D601G	.	.	108	4	44	0	.	659
DMBT1	1755	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124402895	124402895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DMBT1	NM_007329	exon53	c.G7223A	p.R2408Q	.	.	165	46	117	0	.	494
DMRT3	58524	bcgsc.ca	37	9	991000	991000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DMRT3	NM_021240	exon2	c.T1414C	p.S472P	.	.	52	4	56	0	.	516
DNAAF2	55172	bcgsc.ca	37	14	50092473	50092473	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_018139	exon3	c.A2301G	p.K767K	.	.	167	5	133	0	.	.
DNAH10	196385	bcgsc.ca	37	12	124285854	124285854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH10	NM_207437	exon15	c.T2135C	p.L712S	.	.	157	5	126	0	.	95
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124333313	124333313	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH10	NM_207437	exon33	c.5632delG	p.G1878fs	.	.	391	8	309	0	.	95
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu	37	3	57399487	57399487	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH12	NM_178504	exon39	c.5949delT	p.F1983fs	.	.	270	20	192	0	.	47
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu	37	1	225230572	225230572	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH14	NM_001373	exon13	c.1524delA	p.R508fs	.	.	317	20	155	0	.	23
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu	37	1	225511938	225511938	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH14	NM_001373	exon61	c.9231delA	p.L3077fs	.	.	146	9	82	0	.	23
DNAH2	146754	hgsc.bcm.edu	37	17	7674122	7674122	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH2	NM_020877	exon26	c.T4233C	p.S1411S	.	.	99	4	124	0	.	102
DNAH6	1768	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84954804	84954804	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH6	NM_001370	exon61	c.C9984T	p.T3328T	.	.	193	65	222	0	.	69
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu	37	2	196753679	196753679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH7	NM_018897	exon32	c.5073delT	p.F1691fs	.	.	267	16	229	0	.	102
DNAH9	1770	hgsc.bcm.edu	37	17	11572530	11572530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH9	NM_001372	exon16	c.T2881C	p.S961P	.	.	106	3	149	0	.	168
DNAJC2	27000	hgsc.bcm.edu;broad.mit.edu	37	7	102956266	102956266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAJC2	NM_014377	exon15	c.1581delA	p.K527fs	.	.	168	10	103	0	.	158
DNAJC22	79962	hgsc.bcm.edu;broad.mit.edu	37	12	49743396	49743396	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAJC22	NM_024902	exon2	c.741delG	p.M247fs	.	.	156	10	138	0	.	159
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu	37	20	31369189	31369189	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNMT3B	NM_175850	exon3	c.209delG	p.R70fs	.	.	144	10	128	0	.	660
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu	37	2	225695297	225695297	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK10	NM_014689	exon27	c.2997delA	p.K999fs	.	.	163	11	182	0	.	92
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu	37	X	117749649	117749649	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK11	NM_144658	exon30	c.3267delA	p.A1089fs	.	.	202	13	162	0	.	93
DOCK3	1795	hgsc.bcm.edu	37	3	51198017	51198017	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK3	NM_004947	exon12	c.T921C	p.G307G	.	.	127	5	72	0	.	22
DOCK5	80005	bcgsc.ca	37	8	25265659	25265659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK5	NM_024940	exon49	c.5254delC	p.P1752fs	.	.	53	6	84	0	.	71
DOCK5	80005	hgsc.bcm.edu	37	8	25182970	25182970	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK5	NM_024940	exon18	c.A1810T	p.K604X	.	.	137	7	167	0	.	71
DOK4	55715	hgsc.bcm.edu;broad.mit.edu	37	16	57507902	57507902	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOK4	NM_018110	exon7	c.649delG	p.E217fs	.	.	163	11	155	0	.	227
DPP4	1803	hgsc.bcm.edu	37	2	162875361	162875361	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DPP4	NM_001935	exon17	c.1299-1G>A	.	.	.	107	3	94	0	.	93
DPPA5	340168	hgsc.bcm.edu	37	6	74063604	74063604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DPPA5	NM_001025290	exon2	c.T264C	p.A88A	.	.	135	4	97	0	.	90
DPRX	503834	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54140025	54140025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DPRX	NM_001012728	exon3	c.T359A	p.V120E	.	.	160	52	158	0	.	90
DPY19L2P1	554236	bcgsc.ca	37	7	35189842	35189842	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	277	18	197	0	.	.
DPYD	1806	hgsc.bcm.edu;broad.mit.edu	37	1	98144679	98144679	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DPYD	NM_000110	exon8	c.822delA	p.K274fs	.	.	164	10	105	0	.	278
DRD3	1814	bcgsc.ca	37	3	113858352	113858352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DRD3	NM_033663	exon5	c.C718A	p.Q240K	.	.	280	10	149	0	.	93
DSCAM	1826	hgsc.bcm.edu;bcgsc.ca	37	21	41434820	41434820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSCAM	NM_001271534	exon28	c.A4895G	p.K1632R	.	.	89	4	96	0	.	101
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu	37	11	117306420	117306420	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSCAML1	NM_020693	exon27	c.4996delG	p.V1666fs	.	.	144	10	89	0	.	159
DSEL	92126	hgsc.bcm.edu;broad.mit.edu	37	18	65178866	65178866	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSEL	NM_032160	exon2	c.3010delT	p.Y1004fs	.	.	147	13	137	0	.	157
DSG2	1829	hgsc.bcm.edu	37	18	29125991	29125991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSG2	NM_001943	exon15	c.C2642T	p.T881I	.	.	80	4	65	0	.	563
DSP	1832	bcgsc.ca	37	6	7584618	7584618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSP	NM_004415	exon24	c.G7123T	p.G2375W	.	.	153	5	91	0	.	518
DST	667	hgsc.bcm.edu;broad.mit.edu	37	6	56362695	56362695	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DST	NM_015548	exon62	c.12184delA	p.T4062fs	.	.	229	17	166	0	.	523
DUS1L	64118	hgsc.bcm.edu;bcgsc.ca	37	17	80020818	80020818	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUS1L	NM_022156	exon5	c.T429C	p.P143P	.	.	56	4	47	0	.	91
DUSP12	11266	hgsc.bcm.edu;broad.mit.edu	37	1	161726728	161726728	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUSP12	NM_007240	exon6	c.1014delA	p.G338fs	.	.	141	10	77	0	.	226
DUSP16	80824	bcgsc.ca	37	12	12630126	12630126	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUSP16	NM_030640	exon7	c.1639delC	p.Q547fs	.	.	56	6	97	0	.	226
DUT	1854	hgsc.bcm.edu;broad.mit.edu	37	15	48634251	48634251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUT	NM_001025248	exon7	c.735delT	p.G245fs	.	.	200	12	169	0	.	227
DYNC1H1	1778	hgsc.bcm.edu	37	14	102431079	102431079	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYNC1H1	NM_001376	exon1	c.A51G	p.E17E	.	.	43	4	25	0	.	98
DYNC2H1	79659	hgsc.bcm.edu	37	11	103153740	103153740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYNC2H1	NM_001080463	exon74	c.T10837C	p.S3613P	.	.	175	5	81	0	.	68
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	102991458	102991458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYNC2H1	NM_001377	exon8	c.T1175C	p.I392T	.	.	72	4	38	0	.	68
DYSF	8291	hgsc.bcm.edu	37	2	71801370	71801370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYSF	NM_001130982	exon31	c.T3313C	p.S1105P	.	.	97	4	66	0	.	158
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu	37	2	233350834	233350834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ECEL1	NM_004826	exon2	c.A530G	p.Q177R	.	.	9	5	9	0	.	90
EDA2R	60401	hgsc.bcm.edu;broad.mit.edu	37	X	65822591	65822591	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EDA2R	NM_001242310	exon4	c.401delC	p.P134fs	.	.	157	12	111	0	.	227
EEA1	8411	hgsc.bcm.edu;broad.mit.edu	37	12	93251072	93251072	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EEA1	NM_003566	exon5	c.345delA	p.K115fs	.	.	277	20	209	0	.	229
EEF1D	1936	ucsc.edu	37	8	144671244	144671244	+	Silent	SNP	A	A	G	rs4874160	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EEF1D	NM_001130053	exon3	c.G1008C	p.R336R	.	.	68	37	11	0	A|0.768;C|0.230;G|0.002	228
EFHB	151651	hgsc.bcm.edu;broad.mit.edu	37	3	19924173	19924173	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EFHB	NM_144715	exon12	c.2197delC	p.R733fs	.	.	147	10	93	0	.	22
EFR3B	22979	hgsc.bcm.edu	37	2	25354341	25354341	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014971	exon9	c.A954G	p.E318E	.	.	76	4	46	0	.	.
EFS	10278	bcgsc.ca	37	14	23826624	23826624	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EFS	NM_005864	exon6	c.T1497C	p.P499P	.	.	130	18	132	18	.	153
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu	37	6	31864543	31864543	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EHMT2	NM_025256	exon3	c.168delC	p.P56fs	.	.	162	10	98	0	.	91
EIF2S2	8894	hgsc.bcm.edu	37	20	32686360	32686360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF2S2	NM_003908	exon4	c.A377G	p.K126R	.	.	72	4	81	0	.	153
EIF4A1	1973	bcgsc.ca	37	17	7477944	7477944	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF4A1	NM_001416	exon3	c.153delT	p.G51fs	.	.	44	5	78	0	.	227
EIF4B	1975	hgsc.bcm.edu;broad.mit.edu	37	12	53427592	53427592	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF4B	NM_001417	exon9	c.982delC	p.P328fs	.	.	389	26	334	0	.	568
EIF4E2	9470	hgsc.bcm.edu	37	2	233421124	233421124	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF4E2	NM_004846	exon2	c.21-2A>G	.	.	.	99	2	107	0	.	90
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu	37	3	184040193	184040193	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF4G1	NM_001194946	exon12	c.1584delA	p.L528fs	.	.	184	16	114	0	.	344
ELAC2	60528	bcgsc.ca	37	17	12921068	12921068	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELAC2	NM_001165962	exon1	c.197delG	p.G66fs	.	.	47	5	90	0	.	90
ELAVL3	1995	hgsc.bcm.edu;bcgsc.ca	37	19	11565448	11565448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELAVL3	NM_001420	exon7	c.A997G	p.T333A	.	.	127	6	107	0	.	92
ELF1	1997	hgsc.bcm.edu;broad.mit.edu	37	13	41523943	41523943	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELF1	NM_172373	exon5	c.528delA	p.K176fs	.	.	171	13	246	0	.	227
ELF5	2001	hgsc.bcm.edu;broad.mit.edu	37	11	34511593	34511593	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELF5	NM_198381	exon4	c.399delT	p.F133fs	.	.	158	10	98	0	.	227
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu	37	7	37252948	37252948	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELMO1	NM_014800	exon12	c.946delC	p.Q316fs	.	.	233	15	142	0	.	96
ELP3	55140	hgsc.bcm.edu;broad.mit.edu	37	8	27995291	27995291	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELP3	NM_018091	exon10	c.983delT	p.L328fs	.	.	111	10	153	0	.	90
EML5	161436	hgsc.bcm.edu	37	14	89172628	89172628	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EML5	NM_183387	exon11	c.A1800G	p.K600K	.	.	87	4	96	0	.	93
EML6	400954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	55189708	55189708	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001039753	exon35	c.5018delA	p.E1673fs	.	.	128	14	106	0	.	.
EMR2	30817	hgsc.bcm.edu;broad.mit.edu	37	19	14884853	14884853	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EMR2	NM_001271052	exon3	c.96delG	p.W32fs	.	.	178	12	145	0	.	524
ENPP2	5168	bcgsc.ca	37	8	120596025	120596025	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ENPP2	NM_006209	exon18	c.G1631C	p.G544A	.	.	473	11	161	0	.	292
ENTPD5	957	bcgsc.ca	37	14	74453554	74453554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ENTPD5	NM_001249	exon5	c.A260G	p.K87R	.	.	189	6	147	0	.	91
EPG5	57724	hgsc.bcm.edu	37	18	43532416	43532416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPG5	NM_020964	exon3	c.T1202C	p.L401P	.	.	101	3	91	0	.	580
EPHA3	2042	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	89480505	89480505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPHA3	NM_005233	exon13	c.C2342G	p.T781R	.	.	141	83	121	0	.	1500
EPHB4	2050	hgsc.bcm.edu;broad.mit.edu	37	7	100403279	100403279	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPHB4	NM_004444	exon15	c.2522delC	p.P841fs	.	.	137	10	96	0	.	1446
EPPK1	83481	hgsc.bcm.edu	37	8	144940597	144940597	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPPK1	NM_031308	exon1	c.C6825T	p.P2275P	.	.	39	4	1	0	.	25
ERAL1	26284	hgsc.bcm.edu;broad.mit.edu	37	17	27182148	27182148	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERAL1	NM_005702	exon1	c.96delT	p.P32fs	.	.	178	11	115	0	.	91
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu	37	5	96232481	96232481	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERAP2	NM_001130140	exon9	c.1417delA	p.K473fs	.	.	171	11	121	0	.	68
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu	37	2	212248737	212248737	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERBB4	NM_005235	exon28	c.3530delA	p.N1177fs	.	.	114	11	111	0	.	1461
ERCC2	2068	hgsc.bcm.edu	37	19	45867515	45867515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERCC2	NM_000400	exon9	c.A793G	p.T265A	.	.	114	4	83	0	.	848
ERCC8	1161	hgsc.bcm.edu	37	5	60214181	60214181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERCC8	NM_000082	exon4	c.A310G	p.T104A	.	.	117	3	77	0	.	227
ERG	2078	hgsc.bcm.edu;broad.mit.edu	37	21	39755389	39755389	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERG	NM_001136154	exon12	c.1397delG	p.G466fs	.	.	157	14	146	0	.	848
EXO1	9156	hgsc.bcm.edu;broad.mit.edu	37	1	242042452	242042452	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EXO1	NM_130398	exon13	c.1916delC	p.S639fs	.	.	229	17	138	0	.	661
EXOC2	55770	hgsc.bcm.edu	37	6	532529	532529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EXOC2	NM_018303	exon23	c.T2320C	p.S774P	.	.	217	3	144	0	.	662
EXOC4	60412	hgsc.bcm.edu	37	7	133580480	133580480	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EXOC4	NM_021807	exon12	c.A1863G	p.A621A	.	.	133	3	87	0	.	159
EXTL1	2134	bcgsc.ca	37	1	26357658	26357658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EXTL1	NM_004455	exon5	c.C1137A	p.H379Q	.	.	290	10	142	0	.	90
EYA4	2070	hgsc.bcm.edu;broad.mit.edu	37	6	133783807	133783807	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EYA4	NM_172105	exon9	c.629delA	p.Q210fs	.	.	116	10	99	0	.	578
EYS	346007	hgsc.bcm.edu;bcgsc.ca	37	6	66094287	66094287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EYS	NM_001142801	exon8	c.A1291G	p.R431G	.	.	77	4	42	0	.	660
EYS	346007	hgsc.bcm.edu;broad.mit.edu	37	6	64574091	64574091	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EYS	NM_001142800	exon36	c.7216delC	p.L2406fs	.	.	186	12	99	0	.	660
EZH1	2145	hgsc.bcm.edu;broad.mit.edu	37	17	40860046	40860046	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EZH1	NM_001991	exon15	c.1590delC	p.P530fs	.	.	162	10	98	0	.	229
FADS3	3995	hgsc.bcm.edu	37	11	61658711	61658711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FADS3	NM_021727	exon1	c.T143C	p.I48T	.	.	97	4	43	0	.	46
FAM115C	285966	broad.mit.edu;bcgsc.ca	37	7	143400355	143400355	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM115C	NM_173678	exon2	c.268delG	p.G90fs	.	.	425	18	305	0	.	68
FAM117B	150864	hgsc.bcm.edu;broad.mit.edu	37	2	203621969	203621969	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM117B	NM_173511	exon6	c.1138delC	p.P380fs	.	.	296	19	222	0	.	91
FAM124B	79843	bcgsc.ca	37	2	225244733	225244733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM124B	NM_001122779	exon2	c.T925C	p.C309R	.	.	116	6	103	3	.	92
FAM13A	10144	hgsc.bcm.edu	37	4	89702436	89702436	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM13A	NM_014883	exon11	c.T1338C	p.T446T	.	.	97	3	134	0	.	70
FAM151A	338094	hgsc.bcm.edu;broad.mit.edu	37	1	55078303	55078303	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM151A	NM_176782	exon5	c.656delC	p.P219fs	.	.	157	10	102	0	.	90
FAM160B1	57700	hgsc.bcm.edu;bcgsc.ca	37	10	116608429	116608429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM160B1	NM_020940	exon13	c.A1736G	p.D579G	.	.	99	4	94	0	.	91
FAM161B	145483	hgsc.bcm.edu	37	14	74409383	74409383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM161B	NM_152445	exon4	c.A1150G	p.R384G	.	.	70	4	68	0	.	91
FAM171B	165215	bcgsc.ca	37	2	187559047	187559047	+	Silent	SNP	G	G	A	rs73979342		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM171B	NM_177454	exon1	c.G147A	p.Q49Q	.	.	73	22	76	12	G|0.500;A|0.500	141
FAM172A	83989	bcgsc.ca	37	5	93120110	93120110	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM172A	NM_032042	exon9	c.G1002T	p.T334T	.	.	378	11	220	0	.	90
FAM179A	165186	bcgsc.ca	37	2	29240674	29240674	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM179A	NM_199280	exon10	c.G1212A	p.R404R	.	.	231	6	187	0	.	26
FAM186A	121006	hgsc.bcm.edu;bcgsc.ca	37	12	50749223	50749223	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM186A	NM_001145475	exon4	c.A1392G	p.K464K	.	.	107	5	78	0	.	68
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu	37	3	56694990	56694990	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001112736	exon10	c.1216delA	p.I406fs	.	.	234	16	133	0	.	.
FAM208B	54906	hgsc.bcm.edu	37	10	5803302	5803302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_017782	exon19	c.A7042G	p.S2348G	.	.	113	4	127	0	.	.
FAM21A	387680	broad.mit.edu;bcgsc.ca	37	10	51859790	51859790	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM21A	NM_001005751	exon17	c.1601delA	p.Q534fs	.	.	728	18	655	0	.	69
FAM21A	387680	hgsc.bcm.edu;broad.mit.edu	37	10	51829353	51829353	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM21A	NM_001005751	exon3	c.173delC	p.T58fs	.	.	193	12	188	0	.	69
FAM21C	253725	broad.mit.edu;bcgsc.ca	37	10	46254815	46254815	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM21C	NM_015262	exon17	c.1601delA	p.Q534fs	.	.	616	25	589	0	.	91
FAM22D	728130	broad.mit.edu;bcgsc.ca	37	10	89126077	89126077	+	RNA	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM22D	.	.	.	.	.	.	733	12	663	0	.	22
FAM45A	404636	bcgsc.ca	37	10	120896028	120896028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM45A	NM_207009	exon9	c.T943A	p.F315I	.	.	548	16	514	0	.	91
FAM46A	55603	hgsc.bcm.edu	37	6	82459741	82459741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM46A	NM_017633	exon3	c.A1000G	p.R334G	.	.	139	5	116	0	.	90
FAM47C	442444	hgsc.bcm.edu	37	X	37028804	37028804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM47C	NM_001013736	exon1	c.T2321C	p.L774P	.	.	49	4	38	0	.	111
FAM65B	9750	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	24806664	24806664	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM65B	NM_014722	exon23	c.3144delA	p.K1048fs	.	.	106	12	82	0	.	91
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu	37	6	54735393	54735393	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM83B	NM_001010872	exon2	c.349delG	p.G117fs	.	.	186	12	127	0	.	96
FAM83F	113828	hgsc.bcm.edu	37	22	40417739	40417739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM83F	NM_138435	exon4	c.A1225G	p.R409G	.	.	101	3	106	0	.	153
FAN1	22909	broad.mit.edu;bcgsc.ca	37	15	31210457	31210457	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAN1	NM_014967	exon6	c.1902delA	p.A634fs	.	.	79	8	86	0	.	90
FANCA	2175	hgsc.bcm.edu	37	16	89839740	89839740	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCA	NM_000135	exon22	c.A1953G	p.G651G	.	.	91	2	101	0	.	1130
FANCA	2175	hgsc.bcm.edu	37	16	89857899	89857899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCA	NM_000135	exon14	c.T1271C	p.L424P	.	.	82	3	62	0	.	1130
FANCD2	2177	hgsc.bcm.edu	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCD2	NM_001018115	exon26	c.A2391G	p.V797V	.	.	83	8	58	0	A|0.909;G|0.091	229
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu	37	3	10108949	10108949	+	Silent	SNP	T	T	C	rs201487858		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCD2	NM_001018115	exon26	c.T2442C	p.T814T	.	.	116	6	61	0	T|0.998;C|0.002	229
FANCI	55215	hgsc.bcm.edu;broad.mit.edu	37	15	89828374	89828374	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCI	NM_001113378	exon18	c.1746delT	p.T582fs	.	.	164	10	137	0	.	92
FANCM	57697	hgsc.bcm.edu;broad.mit.edu	37	14	45645902	45645902	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCM	NM_020937	exon14	c.3945delA	p.A1315fs	.	.	173	12	183	0	.	569
FAT1	2195	hgsc.bcm.edu	37	4	187517698	187517698	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAT1	NM_005245	exon25	c.T12996C	p.Y4332Y	.	.	100	4	83	0	.	34
FAT2	2196	bcgsc.ca	37	5	150901614	150901614	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAT2	NM_001447	exon18	c.T10540C	p.L3514L	.	.	95	5	43	0	.	96
FAT2	2196	hgsc.bcm.edu;broad.mit.edu	37	5	150924388	150924388	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAT2	NM_001447	exon9	c.6300delG	p.G2100fs	.	.	210	14	111	0	.	96
FBLN2	2199	bcgsc.ca	37	3	13679204	13679204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FBLN2	NM_001004019	exon18	c.G3481A	p.G1161R	.	.	275	8	195	0	.	91
FBXL13	222235	hgsc.bcm.edu;broad.mit.edu	37	7	102665640	102665640	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FBXL13	NM_001111038	exon6	c.365delA	p.N122fs	.	.	168	11	105	0	.	226
FBXO39	162517	bcgsc.ca	37	17	6684083	6684083	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FBXO39	NM_153230	exon2	c.896delC	p.A299fs	.	.	41	5	79	0	.	228
FBXW4	6468	hgsc.bcm.edu	37	10	103433426	103433426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FBXW4	NM_022039	exon3	c.A361G	p.M121V	.	.	91	3	85	0	.	226
FCHSD2	9873	bcgsc.ca	37	11	72549845	72549845	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FCHSD2	NM_014824	exon20	c.A2214G	p.T738T	.	.	147	5	110	1	.	228
FDXR	2232	hgsc.bcm.edu;bcgsc.ca	37	17	72860316	72860316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FDXR	NM_001258012	exon9	c.A1085G	p.D362G	.	.	94	6	54	0	.	226
FER	2241	hgsc.bcm.edu;broad.mit.edu	37	5	108290522	108290522	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FER	NM_005246	exon12	c.1422delA	p.L474fs	.	.	186	12	106	0	.	946
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu	37	14	53326414	53326414	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FERMT2	NM_001135000	exon15	c.1767delA	p.K589fs	.	.	272	18	234	0	.	68
FERMT3	83706	hgsc.bcm.edu	37	11	63988014	63988014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FERMT3	NM_178443	exon12	c.T1430C	p.L477P	.	.	94	4	46	0	.	23
FGA	2243	hgsc.bcm.edu;broad.mit.edu	37	4	155507905	155507905	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FGA	NM_000508	exon5	c.676delA	p.M226X	.	.	155	13	149	0	.	93
FGFBP1	9982	hgsc.bcm.edu	37	4	15938186	15938186	+	Missense_Mutation	SNP	T	T	C	rs201240184		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FGFBP1	NM_005130	exon3	c.A70G	p.K24E	.	.	152	7	145	0	.	90
FHAD1	114827	hgsc.bcm.edu;broad.mit.edu	37	1	15692403	15692403	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FHAD1	NM_052929	exon23	c.3062delC	p.A1021fs	.	.	218	13	91	0	.	69
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FHOD3	NM_025135	exon10	c.1000delC	p.P334fs	.	.	145	10	108	0	.	139
FIG4	9896	hgsc.bcm.edu	37	6	110112750	110112750	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FIG4	NM_014845	exon20	c.A2352G	p.A784A	.	.	55	4	54	0	.	69
FIG4	9896	hgsc.bcm.edu;broad.mit.edu	37	6	110098164	110098164	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FIG4	NM_014845	exon16	c.1790delT	p.V597fs	.	.	203	12	155	0	.	69
FIGNL1	63979	hgsc.bcm.edu;broad.mit.edu	37	7	50514614	50514614	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FIGNL1	NM_001042762	exon4	c.372delA	p.K124fs	.	.	157	10	104	0	.	93
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu	37	6	76124598	76124598	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FILIP1	NM_015687	exon2	c.91delA	p.S31fs	.	.	194	13	133	0	.	94
FLNB	2317	hgsc.bcm.edu;broad.mit.edu	37	3	58107010	58107010	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FLNB	NM_001457	exon20	c.2906delG	p.R969fs	.	.	168	10	135	0	.	593
FLYWCH1	84256	hgsc.bcm.edu;broad.mit.edu	37	16	2979748	2979748	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FLYWCH1	NM_020912	exon3	c.62delC	p.S21fs	.	.	142	12	128	0	.	22
FMN1	342184	hgsc.bcm.edu;broad.mit.edu	37	15	33069072	33069072	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FMN1	NM_001103184	exon16	c.3510delA	p.K1170fs	.	.	142	10	151	0	.	23
FMO4	2329	hgsc.bcm.edu	37	1	171310877	171310877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FMO4	NM_002022	exon10	c.T1576C	p.S526P	.	.	150	3	79	0	.	537
FNIP1	96459	bcgsc.ca	37	5	131008195	131008195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FNIP1	NM_133372	exon14	c.C1942G	p.Q648E	.	.	126	5	74	0	.	92
FOXK1	221937	hgsc.bcm.edu	37	7	4722303	4722303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FOXK1	NM_001037165	exon1	c.A364G	p.S122G	.	.	78	4	66	0	.	516
FOXN1	8456	hgsc.bcm.edu;bcgsc.ca	37	17	26857795	26857795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FOXN1	NM_003593	exon5	c.A859G	p.S287G	.	.	158	6	143	0	.	226
FREM1	158326	hgsc.bcm.edu;bcgsc.ca	37	9	14863881	14863881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FREM1	NM_144966	exon4	c.T255C	p.L85L	.	.	100	4	112	0	.	138
FRG1B	284802	bcgsc.ca	37	20	29624035	29624035	+	RNA	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FRG1B	.	.	.	.	.	.	348	45	213	6	.	22
FRG1B	284802	bcgsc.ca	37	20	29624068	29624068	+	RNA	SNP	T	T	C	rs74684310	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FRG1B	.	.	.	.	.	.	343	25	220	2	T|0.500;C|0.500	22
FRMD4A	55691	hgsc.bcm.edu	37	10	13838525	13838525	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FRMD4A	NM_018027	exon5	c.A270G	p.S90S	.	.	84	4	64	0	.	229
FRMPD1	22844	hgsc.bcm.edu	37	9	37707505	37707505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FRMPD1	NM_014907	exon3	c.T194C	p.L65P	.	.	86	4	72	0	.	159
FSIP2	401024	bcgsc.ca	37	2	186673184	186673184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FSIP2	NM_173651	exon17	c.A19418G	p.Q6473R	.	.	216	6	175	0	.	90
FTSJ1	24140	hgsc.bcm.edu	37	X	48341394	48341394	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FTSJ1	NM_012280	exon12	c.T978C	p.S326S	.	.	62	4	60	0	.	130
FZD6	8323	hgsc.bcm.edu;broad.mit.edu	37	8	104330820	104330820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FZD6	NM_003506	exon3	c.180delT	p.H60fs	.	.	302	18	98	0	.	658
G6PC2	57818	broad.mit.edu;bcgsc.ca	37	2	169757979	169757979	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	G6PC2	NM_021176	exon1	c.138delT	p.C46fs	.	.	89	9	100	0	.	91
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu	37	5	161277851	161277851	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GABRA1	NM_001127643	exon3	c.35delG	p.W12fs	.	.	240	15	139	0	.	93
GABRQ	55879	hgsc.bcm.edu	37	X	151815555	151815555	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GABRQ	NM_018558	exon4	c.T453C	p.A151A	.	.	98	4	120	0	.	133
GALC	2581	hgsc.bcm.edu;bcgsc.ca	37	14	88429767	88429767	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GALC	NM_000153	exon10	c.T1122C	p.T374T	.	.	102	4	90	0	.	90
GALNT13	114805	hgsc.bcm.edu	37	2	155252538	155252538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GALNT13	NM_052917	exon10	c.A1192G	p.R398G	.	.	105	3	80	0	.	95
GALNT13	114805	hgsc.bcm.edu	37	2	155295237	155295237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GALNT13	NM_052917	exon12	c.A1529G	p.E510G	.	.	72	4	63	0	.	95
GALNT15	117248	hgsc.bcm.edu	37	3	16268877	16268877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_054110	exon10	c.A1790G	p.H597R	.	.	87	4	57	0	.	.
GALNT16	57452	hgsc.bcm.edu	37	14	69795179	69795179	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001168368	exon6	c.581delC	p.S194fs	.	.	103	10	76	0	.	.
GATA1	2623	hgsc.bcm.edu;broad.mit.edu	37	X	48650547	48650547	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GATA1	NM_002049	exon3	c.517delT	p.F173fs	.	.	143	11	118	0	.	1315
GCC2	9648	hgsc.bcm.edu	37	2	109086500	109086500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GCC2	NM_181453	exon6	c.G715A	p.E239K	.	.	95	4	86	0	.	91
GCNT3	9245	hgsc.bcm.edu	37	15	59910958	59910958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GCNT3	NM_004751	exon3	c.A521G	p.E174G	.	.	95	4	93	0	.	91
GDAP1L1	78997	hgsc.bcm.edu;broad.mit.edu	37	20	42907863	42907863	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GDAP1L1	NM_001256737	exon6	c.1084delG	p.G362fs	.	.	165	10	162	0	.	153
GDI2	2665	hgsc.bcm.edu;broad.mit.edu	37	10	5836890	5836890	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GDI2	NM_001494	exon4	c.346delA	p.I116fs	.	.	162	10	174	0	.	90
GGA2	23062	hgsc.bcm.edu;bcgsc.ca	37	16	23481435	23481435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GGA2	NM_015044	exon15	c.T1502C	p.L501P	.	.	71	4	87	0	.	91
GGPS1	9453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	235505913	235505913	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GGPS1	NM_001037277	exon4	c.729delA	p.I243fs	.	.	98	10	79	0	.	90
GIGYF1	64599	bcgsc.ca	37	7	100281769	100281769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GIGYF1	NM_022574	exon15	c.C1742G	p.P581R	.	.	144	6	82	0	.	136
GJA8	2703	hgsc.bcm.edu;broad.mit.edu	37	1	147380686	147380686	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GJA8	NM_005267	exon2	c.604delA	p.K202fs	.	.	148	10	89	0	.	138
GLG1	2734	bcgsc.ca	37	16	74528731	74528731	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GLG1	NM_012201	exon7	c.979-2A>G	.	.	.	89	4	116	0	.	136
GLO1	2739	hgsc.bcm.edu;broad.mit.edu	37	6	38654690	38654690	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GLO1	NM_006708	exon2	c.145delT	p.Y49fs	.	.	336	20	218	0	.	227
GLS	2744	hgsc.bcm.edu;bcgsc.ca	37	2	191765310	191765310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GLS	NM_014905	exon4	c.T626C	p.V209A	.	.	55	4	63	0	.	92
GNA13	10672	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	63014373	63014373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GNA13	NM_006572	exon3	c.C559T	p.P187S	.	.	244	59	200	0	.	227
GNAI1	2770	hgsc.bcm.edu;broad.mit.edu	37	7	79842146	79842146	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GNAI1	NM_002069	exon7	c.835delA	p.K279fs	.	.	250	15	184	0	.	653
GNAT3	346562	hgsc.bcm.edu	37	7	80103636	80103636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GNAT3	NM_001102386	exon5	c.T521C	p.V174A	.	.	95	3	90	0	.	23
GOLGA6A	342096	broad.mit.edu;bcgsc.ca	37	15	74373018	74373018	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GOLGA6A	NM_001038640	exon2	c.143delA	p.K48fs	.	.	425	16	455	0	.	44
GOLGA7	51125	bcgsc.ca	37	8	41363503	41363503	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GOLGA7	NM_001002296	exon3	c.338delC	p.T113fs	.	.	28	3	69	0	.	90
GPAM	57678	hgsc.bcm.edu	37	10	113935417	113935417	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPAM	NM_020918	exon6	c.A354G	p.R118R	.	.	60	3	73	0	.	92
GPN3	51184	hgsc.bcm.edu;broad.mit.edu	37	12	110895351	110895351	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPN3	NM_001164372	exon4	c.531delT	p.F177fs	.	.	194	13	129	0	.	90
GPR107	57720	hgsc.bcm.edu;broad.mit.edu	37	9	132863470	132863470	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR107	NM_001136557	exon12	c.1099delA	p.K367fs	.	.	191	12	187	0	.	91
GPR112	139378	bcgsc.ca	37	X	135431237	135431237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR112	NM_153834	exon6	c.T5372C	p.F1791S	.	.	119	7	140	0	.	183
GPR115	221393	hgsc.bcm.edu;broad.mit.edu	37	6	47680293	47680293	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR115	NM_153838	exon5	c.501delA	p.L167fs	.	.	177	13	133	0	.	160
GPR126	57211	hgsc.bcm.edu;broad.mit.edu	37	6	142731050	142731050	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR126	NM_198569	exon17	c.2428delA	p.K810fs	.	.	197	12	141	0	.	91
GPR155	151556	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175318476	175318476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR155	NM_001033045	exon12	c.C1865T	p.S622L	.	.	93	36	95	1	.	91
GPR97	222487	hgsc.bcm.edu;broad.mit.edu	37	16	57707239	57707239	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR97	NM_170776	exon2	c.65delA	p.E22fs	.	.	167	11	170	0	.	91
GPR98	84059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89968413	89968413	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR98	NM_032119	exon22	c.A4803G	p.G1601G	.	.	372	83	177	0	.	103
GPRASP2	114928	hgsc.bcm.edu	37	X	101970497	101970497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPRASP2	NM_138437	exon4	c.T700C	p.S234P	.	.	79	3	92	0	.	131
GRB14	2888	hgsc.bcm.edu;broad.mit.edu	37	2	165378546	165378546	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GRB14	NM_004490	exon6	c.760delA	p.I254fs	.	.	224	16	227	0	.	420
GRB14	2888	hgsc.bcm.edu;broad.mit.edu	37	2	165476321	165476321	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	GRB14,NS,carcinoma,0	GRB14	NM_004490	exon2	c.200delA	p.K67fs	.	.	257	16	273	0	.	420
GRID2	2895	hgsc.bcm.edu;broad.mit.edu	37	4	94690497	94690497	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GRID2	NM_001510	exon15	c.2497delG	p.G833fs	.	.	144	10	183	0	.	159
GRIK5	2901	hgsc.bcm.edu	37	19	42510910	42510910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GRIK5	NM_002088	exon15	c.T1924C	p.F642L	.	.	95	4	84	0	.	90
GTF2E2	2961	bcgsc.ca	37	8	30469994	30469994	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GTF2E2	NM_002095	exon5	c.371delT	p.L124X	.	.	42	5	79	0	.	90
GTF2IRD2B	389524	broad.mit.edu;bcgsc.ca	37	7	74564270	74564270	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GTF2IRD2B	NM_001003795	exon16	c.2017delG	p.V673fs	.	.	934	13	642	0	.	45
GTF2IRD2P1	401375	broad.mit.edu	37	7	72664009	72664009	+	RNA	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	358	18	66	0	.	.
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	455	163	135	0	T|0.500;G|0.500	.
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72664010	72664010	+	RNA	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	354	31	57	1	.	.
GTF2IRD2P1	401375	bcgsc.ca	37	7	72664015	72664015	+	RNA	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	315	2	37	4	.	.
GTPBP2	54676	hgsc.bcm.edu;broad.mit.edu	37	6	43596730	43596730	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GTPBP2	NM_019096	exon1	c.170delC	p.P57fs	.	.	228	17	169	0	.	92
GUCY2F	2986	hgsc.bcm.edu	37	X	108691369	108691369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GUCY2F	NM_001522	exon6	c.A1498G	p.I500V	.	.	53	5	45	0	.	540
GUSB	2990	hgsc.bcm.edu;broad.mit.edu	37	7	65429409	65429409	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GUSB	NM_000181	exon11	c.1690delA	p.S564fs	.	.	156	11	122	0	.	90
GZMA	3001	hgsc.bcm.edu;broad.mit.edu	37	5	54403626	54403626	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GZMA	NM_006144	exon3	c.220delA	p.K74fs	.	.	163	10	85	0	.	94
HAPLN1	1404	hgsc.bcm.edu;broad.mit.edu	37	5	82948593	82948593	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HAPLN1	NM_001884	exon3	c.151delT	p.S51fs	.	.	168	10	79	0	.	580
HAUS6	54801	bcgsc.ca	37	9	19063160	19063160	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HAUS6	NM_017645	exon14	c.1475delA	p.N492fs	.	.	218	16	192	1	.	92
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu	37	9	19063047	19063047	+	Frame_Shift_Del	DEL	T	T	-	rs34558496		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HAUS6	NM_017645	exon14	c.1588delA	p.S530fs	.	.	129	12	114	0	.	92
HDAC4	9759	hgsc.bcm.edu	37	2	240111545	240111545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDAC4	NM_006037	exon4	c.T323C	p.L108P	.	.	87	3	74	0	.	291
HDAC6	10013	hgsc.bcm.edu	37	X	48663924	48663924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDAC6	NM_006044	exon5	c.T391C	p.F131L	.	.	88	4	89	0	.	230
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu	37	X	48661166	48661166	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDAC6	NM_006044	exon2	c.67delC	p.P23fs	.	.	148	10	125	0	.	230
HDC	3067	bcgsc.ca	37	15	50544883	50544883	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDC	NM_002112	exon8	c.G876A	p.G292G	.	.	130	5	115	0	.	156
HDX	139324	hgsc.bcm.edu	37	X	83577009	83577009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDX	NM_144657	exon10	c.A1961G	p.D654G	.	.	97	3	109	0	.	132
HEATR5B	54497	hgsc.bcm.edu	37	2	37217794	37217794	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HEATR5B	NM_019024	exon34	c.A5694G	p.P1898P	.	.	97	4	98	0	.	142
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu	37	2	37234290	37234290	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HEATR5B	NM_019024	exon29	c.4680delA	p.K1560fs	.	.	153	12	120	0	.	142
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu	37	17	58124746	58124746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HEATR6	NM_022070	exon18	c.2693delT	p.F898fs	.	.	212	13	152	0	.	227
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu	37	14	31617960	31617960	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HECTD1	NM_015382	exon15	c.2463delA	p.K821fs	.	.	178	11	190	0	.	570
HECTD4	283450	hgsc.bcm.edu	37	12	112694221	112694221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001109662	exon21	c.A2798G	p.D933G	.	.	123	3	87	0	.	.
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu	37	12	112622648	112622648	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001109662	exon61	c.9720delG	p.G3240fs	.	.	183	11	84	0	.	.
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu	37	12	112630422	112630422	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001109662	exon59	c.8832delC	p.P2944fs	.	.	155	11	71	0	.	.
HELLS	3070	hgsc.bcm.edu;broad.mit.edu	37	10	96336531	96336531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HELLS	NM_018063	exon10	c.1001delA	p.E334fs	.	.	184	12	159	0	.	92
HHIP	64399	bcgsc.ca	37	4	145629399	145629399	+	Missense_Mutation	SNP	C	C	T	rs200500162		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HHIP	NM_022475	exon7	c.C1237T	p.P413S	.	.	72	5	65	1	.	283
HINT3	135114	hgsc.bcm.edu;bcgsc.ca	37	6	126278232	126278232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HINT3	NM_138571	exon1	c.A109C	p.K37Q	.	.	187	8	117	0	.	90
HINT3	135114	hgsc.bcm.edu;broad.mit.edu	37	6	126278229	126278229	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HINT3	NM_138571	exon1	c.106delG	p.G36fs	.	.	185	12	112	0	.	90
HIP1	3092	hgsc.bcm.edu	37	7	75221727	75221727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HIP1	NM_005338	exon3	c.A290G	p.H97R	.	.	92	4	77	0	.	1085
HIVEP3	59269	bcgsc.ca	37	1	41978827	41978827	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HIVEP3	NM_024503	exon8	c.G6065C	p.G2022A	.	.	272	8	124	0	.	157
HK3	3101	hgsc.bcm.edu;broad.mit.edu	37	5	176309024	176309024	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HK3	NM_002115	exon16	c.2158delG	p.D720fs	.	.	195	15	98	0	.	294
HLF	3131	hgsc.bcm.edu;broad.mit.edu	37	17	53345191	53345191	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HLF	NM_002126	exon2	c.195delG	p.L65fs	.	.	147	10	98	0	.	228
HMGCS2	3158	hgsc.bcm.edu;broad.mit.edu	37	1	120301762	120301762	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HMGCS2	NM_005518	exon4	c.829delA	p.I277fs	.	.	200	13	141	0	.	92
HMGN4	10473	hgsc.bcm.edu;broad.mit.edu	37	6	26545644	26545644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HMGN4	NM_006353	exon2	c.210delA	p.A70fs	.	.	155	10	114	0	.	204
HMGN5	79366	hgsc.bcm.edu;broad.mit.edu	37	X	80370463	80370463	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HMGN5	NM_030763	exon7	c.534delA	p.K178fs	.	.	194	15	169	0	.	130
HMP19	0	hgsc.bcm.edu;broad.mit.edu	37	5	173473819	173473819	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HMP19	NM_015980	exon2	c.61delG	p.G21fs	.	.	163	10	98	0	.	90
HOXA4	3201	hgsc.bcm.edu;broad.mit.edu	37	7	27170333	27170333	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HOXA4	NM_002141	exon1	c.20delT	p.L7X	.	.	213	14	170	0	.	153
HOXA9	3205	hgsc.bcm.edu;broad.mit.edu	37	7	27204507	27204507	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	HOXA9,brain,glioma,0	HOXA9	NM_152739	exon1	c.570delC	p.P190fs	.	.	159	11	90	0	.	1082
HOXB2	3212	hgsc.bcm.edu	37	17	46622272	46622272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HOXB2	NM_002145	exon1	c.T2C	p.M1T	.	.	62	4	37	0	.	90
HPS5	11234	hgsc.bcm.edu	37	11	18305405	18305405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HPS5	NM_181507	exon21	c.A2995G	p.R999G	.	.	90	4	47	0	.	133
HRCT1	646962	hgsc.bcm.edu	37	9	35906303	35906303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HRCT1	NM_001039792	exon1	c.A19G	p.S7G	.	.	100	6	68	0	.	22
HS3ST5	222537	hgsc.bcm.edu	37	6	114383906	114383906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HS3ST5	NM_153612	exon1	c.A104G	p.D35G	.	.	117	3	77	0	.	92
HSF2BP	11077	broad.mit.edu;bcgsc.ca	37	21	45050316	45050316	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSF2BP	NM_007031	exon6	c.461delT	p.F154fs	.	.	70	7	90	0	.	91
HSF4	3299	hgsc.bcm.edu;bcgsc.ca	37	16	67203201	67203201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSF4	NM_001040667	exon14	c.A1274G	p.E425G	.	.	72	4	59	0	.	90
HSPA1B	3304	hgsc.bcm.edu	37	6	31796253	31796253	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSPA1B	NM_005346	exon1	c.526delC	p.P176fs	.	.	158	10	117	0	.	135
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu	37	14	65008143	65008143	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSPA2	NM_021979	exon1	c.576delG	p.A192fs	.	.	165	10	133	0	.	226
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu	37	1	22168836	22168836	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSPG2	NM_005529	exon68	c.8948delC	p.P2983fs	.	.	178	11	114	0	.	141
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu	37	1	22178628	22178628	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSPG2	NM_005529	exon53	c.6823delC	p.Q2275fs	.	.	244	15	114	0	.	141
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu	37	1	22217107	22217107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSPG2	NM_005529	exon4	c.325delC	p.R109fs	.	.	176	11	105	0	.	141
HTATIP2	10553	hgsc.bcm.edu;broad.mit.edu	37	11	20398242	20398242	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HTATIP2	NM_001098520	exon4	c.522delT	p.N174fs	.	.	169	13	130	0	.	514
HTRA3	94031	hgsc.bcm.edu	37	4	8307696	8307696	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HTRA3	NM_053044	exon9	c.1197-2A>G	.	.	.	96	2	99	0	.	91
IBSP	3381	bcgsc.ca	37	4	88732532	88732532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IBSP	NM_004967	exon7	c.A424C	p.K142Q	.	.	87	5	122	0	.	90
IFNG	3458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	68551987	68551987	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IFNG	NM_000619	exon2	c.167delT	p.L56X	.	.	77	11	107	0	.	90
IFNL3	282617	hgsc.bcm.edu;broad.mit.edu	37	19	39734707	39734707	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_172139	exon3	c.349delG	p.D117fs	.	.	161	10	112	0	.	.
IFT80	57560	hgsc.bcm.edu;broad.mit.edu	37	3	160037585	160037585	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IFT80	NM_020800	exon9	c.920delA	p.N307fs	.	.	162	10	127	0	.	522
IGDCC3	9543	bcgsc.ca	37	15	65621442	65621442	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IGDCC3	NM_004884	exon14	c.C2250T	p.S750S	.	.	138	7	131	0	.	93
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu	37	15	65623433	65623433	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IGDCC3	NM_004884	exon9	c.1516delG	p.A506fs	.	.	169	15	152	0	.	93
IGDCC4	57722	hgsc.bcm.edu	37	15	65689174	65689174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IGDCC4	NM_020962	exon6	c.T995C	p.L332P	.	.	82	4	36	0	.	93
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu	37	3	151164306	151164306	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IGSF10	NM_178822	exon4	c.3463delA	p.T1155fs	.	.	256	20	191	0	.	102
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu	37	1	159900106	159900106	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IGSF9	NM_001135050	exon15	c.1937delC	p.P646fs	.	.	155	10	64	0	.	156
IKBIP	121457	hgsc.bcm.edu;broad.mit.edu	37	12	99020228	99020228	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IKBIP	NM_153687	exon3	c.614delT	p.L205fs	.	.	167	10	99	0	.	226
IL18RAP	8807	hgsc.bcm.edu;bcgsc.ca	37	2	103067460	103067460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL18RAP	NM_003853	exon11	c.A1363G	p.R455G	.	.	77	4	59	0	.	95
IL20RA	53832	hgsc.bcm.edu;broad.mit.edu	37	6	137322699	137322699	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL20RA	NM_014432	exon7	c.1658delA	p.N553fs	.	.	225	14	196	0	.	94
IL31RA	133396	hgsc.bcm.edu;broad.mit.edu	37	5	55168109	55168109	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL31RA	NM_001242637	exon4	c.284delA	p.E95fs	.	.	164	11	106	0	.	91
IL32	9235	ucsc.edu	37	16	3119304	3119304	+	Missense_Mutation	SNP	A	A	G	rs2981599		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL32	NM_004221	exon7	c.A515G	p.D172G	.	.	187	47	160	34	.	92
IL9R	3581	bcgsc.ca	37	X	155231123	155231123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL9R	NM_176786	exon2	c.T95C	p.V32A	.	.	367	9	329	2	.	40
IL9R	3581	hgsc.bcm.edu	37	X	155239775	155239775	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL9R	NM_002186	exon9	c.1267delC	p.P423fs	.	.	159	10	116	0	.	40
IMMP1L	196294	hgsc.bcm.edu;broad.mit.edu	37	11	31477911	31477911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IMMP1L	NM_144981	exon5	c.217delA	p.S73fs	.	.	162	12	134	0	.	90
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu	37	6	76720902	76720902	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IMPG1	NM_001563	exon8	c.847delA	p.I283fs	.	.	145	12	98	0	.	93
IMPG2	50939	hgsc.bcm.edu	37	3	101023118	101023118	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IMPG2	NM_016247	exon3	c.373delT	p.W125fs	.	.	153	11	135	0	.	93
INPP1	3628	bcgsc.ca	37	2	191236001	191236001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	INPP1	NM_002194	exon6	c.A1073G	p.E358G	.	.	81	5	83	0	.	228
INTS10	55174	hgsc.bcm.edu	37	8	19675087	19675087	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	INTS10	NM_018142	exon1	c.A39G	p.R13R	.	.	61	2	89	0	.	91
INTS4L2	644619	broad.mit.edu	37	7	65150699	65150699	+	RNA	SNP	C	C	T	rs78915230	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	112	13	23	0	C|0.500;T|0.500	.
INTU	27152	hgsc.bcm.edu;broad.mit.edu	37	4	128608872	128608872	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	INTU	NM_015693	exon8	c.1299delT	p.H433fs	.	.	254	17	231	0	.	91
IPO4	79711	hgsc.bcm.edu	37	14	24653232	24653232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IPO4	NM_024658	exon18	c.T1841C	p.L614P	.	.	101	4	80	0	.	226
IPO5	3843	hgsc.bcm.edu;bcgsc.ca	37	13	98658548	98658548	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IPO5	NM_002271	exon17	c.A1716G	p.R572R	.	.	214	5	113	0	.	228
IQCB1	9657	hgsc.bcm.edu;broad.mit.edu	37	3	121527845	121527845	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IQCB1	NM_001023570	exon6	c.405delA	p.K135fs	.	.	225	14	185	0	.	90
IQSEC1	9922	hgsc.bcm.edu	37	3	12942773	12942773	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IQSEC1	NM_001134382	exon15	c.3054delG	p.G1018fs	.	.	184	11	136	0	.	91
IQSEC3	440073	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	271222	271222	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IQSEC3	NM_001170738	exon8	c.C2574A	p.G858G	.	.	81	41	120	1	.	560
IRAK4	51135	hgsc.bcm.edu	37	12	44180517	44180517	+	In_Frame_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IRAK4	NM_016123	exon12	c.1382delA	p.X461X	.	.	147	10	128	0	.	1366
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493060	77493060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IRF2BPL	NM_024496	exon1	c.A1076G	p.E359G	.	.	100	4	66	0	.	90
IRGC	56269	bcgsc.ca	37	19	44222751	44222751	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IRGC	NM_019612	exon2	c.41delA	p.E14fs	.	.	55	6	84	0	.	70
ITGA5	3678	hgsc.bcm.edu	37	12	54796806	54796806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGA5	NM_002205	exon19	c.A1943G	p.D648G	.	.	113	3	108	0	.	659
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu	37	2	173355995	173355995	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGA6	NM_000210	exon22	c.2825delG	p.R942fs	.	.	183	11	153	0	.	227
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu	37	16	31413551	31413551	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGAD	NM_005353	exon6	c.543delG	p.E181fs	.	.	148	10	145	0	.	226
ITGB2	3689	hgsc.bcm.edu;broad.mit.edu	37	21	46309403	46309403	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGB2	NM_000211	exon13	c.1665delG	p.G555fs	.	.	168	10	134	0	.	717
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu	37	17	73746239	73746239	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGB4	NM_001005731	exon28	c.3364delC	p.P1122fs	.	.	172	11	149	0	.	227
ITGB5	3693	bcgsc.ca	37	3	124483311	124483311	+	Missense_Mutation	SNP	A	A	G	rs202107457		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGB5	NM_002213	exon14	c.T2231C	p.L744P	.	.	101	5	62	0	A|0.999;G|0.001	227
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu	37	3	52860860	52860860	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITIH4	NM_001166449	exon4	c.466delG	p.V156fs	.	.	196	12	143	0	.	46
ITPKA	3706	hgsc.bcm.edu	37	15	41794627	41794627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITPKA	NM_002220	exon5	c.T1036C	p.F346L	.	.	96	5	79	0	.	226
ITPR1	3708	bcgsc.ca	37	3	4856235	4856235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITPR1	NM_001168272	exon57	c.C7645A	p.P2549T	.	.	140	6	91	0	.	710
ITPR2	3709	hgsc.bcm.edu	37	12	26809378	26809378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITPR2	NM_002223	exon19	c.T2296C	p.S766P	.	.	83	4	104	0	.	542
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu	37	12	26640046	26640046	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITPR2	NM_002223	exon40	c.5509delA	p.R1837fs	.	.	159	11	242	0	.	542
ITSN2	50618	bcgsc.ca	37	2	24494678	24494678	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITSN2	NM_147152	exon19	c.A2214G	p.K738K	.	.	268	7	249	0	.	539
JAG1	182	hgsc.bcm.edu;broad.mit.edu	37	20	10622493	10622493	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JAG1	NM_000214	exon22	c.2620delG	p.A874fs	.	.	191	13	190	0	.	1273
JAG2	3714	hgsc.bcm.edu;broad.mit.edu	37	14	105618518	105618518	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JAG2	NM_145159	exon6	c.899delG	p.G300fs	.	.	220	14	199	0	.	846
JAK1	3716	hgsc.bcm.edu;broad.mit.edu	37	1	65310468	65310468	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JAK1	NM_002227	exon16	c.2220delC	p.P740fs	.	.	187	13	116	0	.	3900
JMJD1C	221037	broad.mit.edu;bcgsc.ca	37	10	64952699	64952699	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JMJD1C	NM_032776	exon16	c.6075delA	p.K2025fs	.	.	71	7	81	0	.	275
JMJD1C	221037	hgsc.bcm.edu	37	10	64967219	64967219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JMJD1C	NM_032776	exon10	c.G4210A	p.D1404N	.	.	100	4	113	0	.	275
JSRP1	126306	hgsc.bcm.edu	37	19	2254202	2254202	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JSRP1	NM_144616	exon4	c.G246A	p.R82R	.	.	90	4	72	0	.	91
KALRN	8997	hgsc.bcm.edu;broad.mit.edu	37	3	124210240	124210240	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KALRN	NM_003947	exon31	c.4652delC	p.T1551fs	.	.	154	10	69	0	.	738
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu	37	8	41832291	41832291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001099412	exon9	c.1413delT	p.F471fs	.	.	184	12	217	0	.	.
KCNC1	3746	broad.mit.edu;mdanderson.org	37	11	17757951	17757951	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNC1	NM_004976	exon1	c.G402A	p.A134A	.	.	22	8	10	0	.	91
KCNG3	170850	hgsc.bcm.edu;broad.mit.edu	37	2	42671493	42671493	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNG3	NM_133329	exon2	c.892delT	p.W298fs	.	.	174	12	117	0	.	90
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu	37	14	63174612	63174612	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNH5	NM_139318	exon11	c.2581delA	p.T861fs	.	.	183	14	194	0	.	98
KCNH8	131096	hgsc.bcm.edu	37	3	19559532	19559532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNH8	NM_144633	exon15	c.A2585G	p.E862G	.	.	131	5	96	0	.	524
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu	37	10	78799310	78799310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNMA1	NM_002247	exon15	c.1835delG	p.G612fs	.	.	158	10	117	0	.	93
KCNN2	3781	hgsc.bcm.edu	37	5	113698631	113698631	+	Silent	SNP	T	T	C	rs76852708		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNN2	NM_021614	exon1	c.T159C	p.A53A	.	.	17	0	2	0	.	92
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu	37	6	73787525	73787525	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNQ5	NM_001160132	exon5	c.833delT	p.I278fs	.	.	183	11	114	0	.	158
KCTD19	146212	hgsc.bcm.edu	37	16	67329298	67329298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCTD19	NM_001100915	exon9	c.T1259C	p.L420P	.	.	82	4	67	0	.	69
KCTD9	54793	bcgsc.ca	37	8	25301833	25301833	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCTD9	NM_017634	exon3	c.189delT	p.F63fs	.	.	62	6	84	0	.	90
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu	37	12	122018773	122018773	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KDM2B	NM_032590	exon1	c.44delC	p.P15fs	.	.	227	14	176	0	.	638
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu	37	9	6805725	6805725	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KDM4C	NM_001146696	exon3	c.337delA	p.K113fs	.	.	200	12	199	0	.	228
KDM6A	7403	hgsc.bcm.edu	37	X	44941973	44941973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KDM6A	NM_021140	exon22	c.A3223G	p.R1075G	.	.	72	3	78	0	.	2748
KHDRBS2	202559	hgsc.bcm.edu;broad.mit.edu	37	6	62688078	62688078	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KHDRBS2	NM_152688	exon4	c.376delC	p.H126fs	.	.	164	10	146	0	.	272
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu	37	19	34832378	34832378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA0355	NM_014686	exon10	c.1539delT	p.D513fs	.	.	178	12	152	0	.	91
KIAA0513	9764	hgsc.bcm.edu	37	16	85112029	85112029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA0513	NM_014732	exon7	c.A791G	p.E264G	.	.	121	4	95	0	.	135
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu	37	5	5457725	5457725	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA0947	NM_015325	exon12	c.972delT	p.H324fs	.	.	331	20	218	0	.	48
KIAA1109	84162	hgsc.bcm.edu	37	4	123145811	123145811	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1109	NM_015312	exon21	c.A2772G	p.T924T	.	.	169	2	209	0	.	80
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu	37	8	95531264	95531264	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1429	NM_015496	exon9	c.2462delA	p.N821fs	.	.	161	10	51	0	.	92
KIAA1598	57698	hgsc.bcm.edu;broad.mit.edu	37	10	118728182	118728182	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1598	NM_001127211	exon3	c.153delA	p.K51fs	.	.	151	10	123	0	.	90
KIAA1609	57707	hgsc.bcm.edu;broad.mit.edu	37	16	84520325	84520325	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1609	NM_020947	exon5	c.870delA	p.G290fs	.	.	157	10	152	0	.	92
KIAA1715	80856	hgsc.bcm.edu;broad.mit.edu	37	2	176804341	176804341	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	KIAA1715,NS,carcinoma,+2	KIAA1715	NM_030650	exon10	c.751delC	p.R251fs	.	.	205	12	189	0	.	93
KIAA1731	85459	hgsc.bcm.edu	37	11	93412715	93412715	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1731	NM_033395	exon7	c.T762C	p.A254A	.	.	134	4	68	0	.	22
KIAA1751	85452	hgsc.bcm.edu;bcgsc.ca	37	1	1887022	1887022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1751	NM_001080484	exon18	c.T2284C	p.S762P	.	.	179	8	95	0	.	69
KIAA1804	0	hgsc.bcm.edu;broad.mit.edu	37	1	233512224	233512224	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1804	NM_032435	exon8	c.1875delA	p.I625fs	.	.	166	10	80	0	.	523
KIAA1841	84542	bcgsc.ca	37	2	61344510	61344510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1841	NM_032506	exon18	c.T1855C	p.S619P	.	.	249	6	216	1	.	90
KIAA2026	158358	hgsc.bcm.edu;bcgsc.ca	37	9	5921058	5921058	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA2026	NM_001017969	exon8	c.A4938G	p.S1646S	.	.	72	5	51	0	.	92
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu	37	9	5954073	5954073	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA2026	NM_001017969	exon4	c.2235delA	p.K745fs	.	.	136	10	140	0	.	92
KIDINS220	57498	hgsc.bcm.edu	37	2	8872078	8872078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIDINS220	NM_020738	exon30	c.T4088C	p.L1363P	.	.	110	4	80	0	.	93
KIF13B	23303	hgsc.bcm.edu	37	8	28928094	28928094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF13B	NM_015254	exon40	c.C5408T	p.S1803L	.	.	47	3	78	0	.	22
KIF13B	23303	hgsc.bcm.edu	37	8	28999714	28999714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF13B	NM_015254	exon19	c.A2294G	p.D765G	.	.	78	3	97	0	.	22
KIF15	56992	hgsc.bcm.edu;bcgsc.ca	37	3	44835775	44835775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF15	NM_020242	exon8	c.T706C	p.S236P	.	.	165	6	114	0	.	91
KIF1A	547	hgsc.bcm.edu;broad.mit.edu	37	2	241696755	241696755	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF1A	NM_001244008	exon27	c.2839delC	p.L947fs	.	.	135	10	108	0	.	91
KIF3C	3797	bcgsc.ca	37	2	26203679	26203679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF3C	NM_002254	exon1	c.C1108G	p.Q370E	.	.	304	9	304	1	.	94
KIF5A	3798	hgsc.bcm.edu	37	12	57974761	57974761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF5A	NM_004984	exon24	c.T2561C	p.L854P	.	.	92	3	74	0	.	517
KIFC2	90990	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	145693366	145693366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIFC2	NM_145754	exon7	c.C806T	p.P269L	.	.	218	25	42	0	.	92
KLF8	11279	hgsc.bcm.edu	37	X	56295832	56295832	+	Missense_Mutation	SNP	T	T	C	rs200006019		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KLF8	NM_001159296	exon5	c.T668C	p.M223T	.	.	68	4	63	0	T|0.999;C|0.001	131
KLHL25	64410	hgsc.bcm.edu;bcgsc.ca	37	15	86312123	86312123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KLHL25	NM_022480	exon2	c.T919C	p.C307R	.	.	126	5	140	0	.	92
KLHL33	123103	hgsc.bcm.edu	37	14	20897683	20897683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001109997	exon3	c.A1027G	p.N343D	.	.	74	4	80	0	.	.
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu	37	12	123014679	123014679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KNTC1	NM_014708	exon2	c.69delA	p.R23fs	.	.	154	10	103	0	.	543
KRAS	3845	hgsc.bcm.edu;bcgsc.ca	37	12	25368464	25368464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRAS	NM_033360	exon5	c.A481G	p.R161G	.	.	67	4	138	0	.	92875
KRT16	3868	hgsc.bcm.edu;broad.mit.edu	37	17	39766478	39766478	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRT16	NM_005557	exon7	c.1291delC	p.Q431fs	.	.	173	11	188	0	.	91
KRT20	54474	hgsc.bcm.edu;broad.mit.edu	37	17	39041106	39041106	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRT20	NM_019010	exon1	c.332delC	p.P111fs	.	.	160	10	172	0	.	155
KRT7	3855	hgsc.bcm.edu;broad.mit.edu	37	12	52639299	52639299	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRT7	NM_005556	exon7	c.1088delG	p.R363fs	.	.	129	13	108	0	.	90
KRTAP19-8	728299	hgsc.bcm.edu	37	21	32410759	32410759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRTAP19-8	NM_001099219	exon1	c.A4G	p.S2G	.	.	142	3	130	0	.	1
KTN1	3895	hgsc.bcm.edu	37	14	56126388	56126388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KTN1	NM_004986	exon31	c.C2966T	p.S989F	.	.	100	4	59	0	.	1147
L1CAM	3897	hgsc.bcm.edu;bcgsc.ca	37	X	153128287	153128287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	L1CAM	NM_000425	exon28	c.T3605C	p.L1202P	.	.	72	4	63	0	.	138
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu	37	22	41620044	41620044	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	L3MBTL2	NM_031488	exon9	c.963delC	p.Y321fs	.	.	198	12	152	0	.	92
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu	37	6	130425608	130425608	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	L3MBTL3	NM_032438	exon19	c.1774delA	p.K592fs	.	.	194	13	157	0	.	96
LAMA3	3909	hgsc.bcm.edu	37	18	21494402	21494402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LAMA3	NM_198129	exon57	c.T7358C	p.V2453A	.	.	65	4	63	0	.	100
LAMA3	3909	hgsc.bcm.edu	37	18	21494698	21494698	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LAMA3	NM_198129	exon58	c.A7518G	p.G2506G	.	.	113	3	109	0	.	100
LAMC1	3915	hgsc.bcm.edu	37	1	183109548	183109548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LAMC1	NM_002293	exon27	c.G4483A	p.A1495T	.	.	82	4	58	0	.	252
LARP7	51574	hgsc.bcm.edu;broad.mit.edu	37	4	113567545	113567545	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LARP7	NM_001267039	exon5	c.262delA	p.K88fs	.	.	180	11	259	0	.	93
LAS1L	81887	hgsc.bcm.edu	37	X	64754546	64754546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LAS1L	NM_031206	exon1	c.A50G	p.D17G	.	.	104	4	78	0	.	196
LCA5	167691	hgsc.bcm.edu;broad.mit.edu	37	6	80197095	80197095	+	Frame_Shift_Del	DEL	T	T	-	rs34176430		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LCA5	NM_001122769	exon8	c.1720delA	p.S574fs	.	.	159	10	109	0	.	90
LCA5L	150082	hgsc.bcm.edu	37	21	40800338	40800338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LCA5L	NM_152505	exon4	c.G82A	p.A28T	.	.	147	4	150	0	.	22
LCE2D	353141	hgsc.bcm.edu;broad.mit.edu	37	1	152636615	152636615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LCE2D	NM_178430	exon2	c.34delC	p.P12fs	.	.	146	10	114	0	.	68
LDLRAD1	388633	hgsc.bcm.edu;broad.mit.edu	37	1	54476004	54476004	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LDLRAD1	NM_001010978	exon5	c.420delA	p.K140fs	.	.	164	11	91	0	.	137
LDLRAD3	143458	hgsc.bcm.edu	37	11	36119988	36119988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LDLRAD3	NM_174902	exon4	c.A431G	p.E144G	.	.	124	3	56	0	.	90
LECT1	11061	hgsc.bcm.edu	37	13	53277943	53277943	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LECT1	NM_007015	exon7	c.G792A	p.Q264Q	.	.	78	3	74	0	.	92
LEPROT	54741	hgsc.bcm.edu;broad.mit.edu	37	1	65897552	65897552	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LEPROT	NM_001198681	exon5	c.373delT	p.F125fs	.	.	206	13	111	0	.	90
LHX1	3975	hgsc.bcm.edu;broad.mit.edu	37	17	35300095	35300095	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LHX1	NM_005568	exon5	c.888delC	p.F296fs	.	.	154	10	119	0	.	92
LILRA2	11027	bcgsc.ca	37	19	55086776	55086776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LILRA2	NM_001130917	exon5	c.G709T	p.G237W	.	.	492	11	389	0	.	91
LILRA6	79168	broad.mit.edu;bcgsc.ca	37	19	54745696	54745696	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LILRA6	NM_024318	exon4	c.414delG	p.G138fs	.	.	645	33	591	1	.	24
LIMK1	3984	hgsc.bcm.edu;broad.mit.edu	37	7	73521482	73521482	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LIMK1	NM_002314	exon8	c.1024delG	p.G342fs	.	.	171	11	152	0	.	523
LMBRD1	55788	hgsc.bcm.edu;bcgsc.ca	37	6	70490443	70490443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LMBRD1	NM_018368	exon3	c.T250C	p.W84R	.	.	52	4	40	0	.	91
LOC100506060	0	broad.mit.edu	37	16	70255294	70255294	+	RNA	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	29	3	18	0	.	.
LOC642236	0	bcgsc.ca	37	9	68452945	68452945	+	RNA	SNP	G	G	A	rs62545407		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	114	25	69	3	.	.
LOC642236	0	bcgsc.ca	37	9	68452987	68452987	+	RNA	SNP	G	G	C	rs62545408		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	89	29	39	3	.	.
LOC642846	0	bcgsc.ca	37	12	9447537	9447537	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	292	6	336	0	.	.
LOC642846	0	bcgsc.ca	37	12	9452062	9452062	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	143	8	201	0	.	.
LPA	4018	hgsc.bcm.edu;bcgsc.ca	37	6	161022116	161022116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LPA	NM_005577	exon20	c.A2960G	p.N987S	.	.	74	4	136	0	.	74
LRBA	987	hgsc.bcm.edu;broad.mit.edu	37	4	151829842	151829842	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRBA	NM_006726	exon10	c.1329delT	p.F443fs	.	.	148	10	144	0	.	157
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu	37	3	197566229	197566229	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRCH3	NM_032773	exon10	c.1289delA	p.Q430fs	.	.	157	11	96	0	.	91
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu	37	11	66627324	66627324	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRFN4	NM_024036	exon2	c.1566delG	p.V522fs	.	.	149	10	76	0	.	90
LRP12	29967	hgsc.bcm.edu;broad.mit.edu	37	8	105503191	105503191	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRP12	NM_013437	exon7	c.2290delG	p.V764X	.	.	185	11	25	0	.	90
LRP1B	53353	hgsc.bcm.edu	37	2	141806696	141806696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRP1B	NM_018557	exon11	c.A1648G	p.I550V	.	.	187	5	270	0	.	311
LRP6	4040	bcgsc.ca	37	12	12317252	12317252	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRP6	NM_002336	exon9	c.2007delT	p.F669fs	.	.	44	5	92	0	.	661
LRRC16A	55604	hgsc.bcm.edu;broad.mit.edu	37	6	25619801	25619801	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC16A	NM_017640	exon37	c.4106delT	p.I1369fs	.	.	152	11	117	0	.	137
LRRC32	2615	hgsc.bcm.edu;broad.mit.edu	37	11	76370772	76370772	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC32	NM_005512	exon3	c.1865delG	p.G622fs	.	.	140	12	94	0	.	90
LRRC37A2	474170	bcgsc.ca	37	17	44626661	44626661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001006607	exon9	c.A4156G	p.N1386D	.	.	891	19	675	1	.	.
LRRC37A2	474170	broad.mit.edu;bcgsc.ca	37	17	44626347	44626347	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001006607	exon9	c.3842delT	p.I1281fs	.	.	239	10	175	0	.	.
LRRC58	116064	hgsc.bcm.edu;broad.mit.edu	37	3	120054700	120054700	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001099678	exon2	c.601delA	p.I201fs	.	.	158	12	129	0	.	.
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu	37	1	90049043	90049043	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC8B	NM_015350	exon5	c.834delT	p.Y278fs	.	.	178	11	114	0	.	92
LRRC8D	55144	hgsc.bcm.edu	37	1	90399470	90399470	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC8D	NM_018103	exon3	c.A843G	p.G281G	.	.	111	2	68	0	.	92
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu	37	2	238666189	238666189	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRFIP1	NM_001137550	exon17	c.1222delG	p.G408fs	.	.	242	16	251	0	.	153
LRRFIP2	9209	hgsc.bcm.edu;broad.mit.edu	37	3	37149563	37149563	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRFIP2	NM_006309	exon15	c.714+1G>-	.	.	.	156	10	110	0	.	91
LRRIQ4	344657	hgsc.bcm.edu	37	3	169540116	169540116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001080460	exon1	c.T407C	p.V136A	.	.	94	3	65	0	.	.
LTK	4058	hgsc.bcm.edu	37	15	41797008	41797008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LTK	NM_002344	exon17	c.T2083C	p.F695L	.	.	99	3	76	0	.	1377
LUZP4	51213	hgsc.bcm.edu;broad.mit.edu	37	X	114536631	114536631	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LUZP4	NM_016383	exon2	c.166delA	p.K56fs	.	.	186	12	185	0	.	132
LY75	4065	hgsc.bcm.edu;bcgsc.ca	37	2	160732083	160732083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LY75	NM_002349	exon12	c.A1846G	p.S616G	.	.	105	5	83	0	.	90
LYPD1	116372	hgsc.bcm.edu;broad.mit.edu	37	2	133403775	133403775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LYPD1	NM_144586	exon3	c.269delC	p.P90fs	.	.	158	10	119	0	.	90
LYST	1130	hgsc.bcm.edu;broad.mit.edu	37	1	235969266	235969266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LYST	NM_000081	exon6	c.3170delA	p.K1057fs	.	.	178	13	137	0	.	143
MAGEB16	139604	bcgsc.ca	37	X	35820796	35820796	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAGEB16	NM_001099921	exon2	c.C483G	p.H161Q	.	.	89	5	76	0	.	66
MAGEB16	139604	hgsc.bcm.edu;bcgsc.ca	37	X	35820408	35820408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAGEB16	NM_001099921	exon2	c.A95G	p.K32R	.	.	88	4	87	0	.	66
MAGEC3	139081	hgsc.bcm.edu	37	X	140967163	140967163	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAGEC3	NM_138702	exon3	c.461delT	p.L154fs	.	.	194	12	177	0	.	555
MAML1	9794	hgsc.bcm.edu;broad.mit.edu	37	5	179193024	179193024	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAML1	NM_014757	exon2	c.1013delC	p.S338fs	.	.	146	9	69	0	.	848
MAML3	55534	hgsc.bcm.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAML3	NM_018717	exon2	c.G1482A	p.Q494Q	.	.	76	4	72	0	.	455
MAN1C1	57134	hgsc.bcm.edu;broad.mit.edu	37	1	26104704	26104704	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAN1C1	NM_020379	exon9	c.1366delG	p.G456fs	.	.	225	14	123	0	.	91
MAN2A2	4122	bcgsc.ca	37	15	91459448	91459448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAN2A2	NM_006122	exon19	c.T2956C	p.F986L	.	.	59	4	52	0	.	136
MAP7D3	79649	hgsc.bcm.edu	37	X	135328496	135328496	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAP7D3	NM_024597	exon2	c.T75C	p.A25A	.	.	143	5	122	0	.	110
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu	37	X	135313838	135313838	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAP7D3	NM_024597	exon8	c.1278delC	p.P426fs	.	.	143	10	142	0	.	110
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu	37	X	135328464	135328464	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAP7D3	NM_024597	exon2	c.107delA	p.K36fs	.	.	160	10	140	0	.	110
MAPK11	5600	bcgsc.ca	37	22	50705467	50705467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAPK11	NM_002751	exon7	c.T506C	p.F169S	.	.	88	5	72	1	.	1402
MARK1	4139	hgsc.bcm.edu	37	1	220792019	220792019	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MARK1	NM_018650	exon9	c.C831T	p.P277P	.	.	87	4	62	0	.	802
MARK3	4140	hgsc.bcm.edu;broad.mit.edu	37	14	103934485	103934485	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MARK3	NM_001128919	exon12	c.1226delT	p.V409fs	.	.	181	11	158	0	.	360
MARVELD3	91862	hgsc.bcm.edu;broad.mit.edu	37	16	71674880	71674880	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MARVELD3	NM_001017967	exon3	c.1183delC	p.P395fs	.	.	203	13	191	0	.	91
MATN2	4147	bcgsc.ca	37	8	98991222	98991222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MATN2	NM_002380	exon6	c.A1067G	p.K356R	.	.	276	7	98	0	.	24
MATN3	4148	hgsc.bcm.edu;broad.mit.edu	37	2	20202988	20202988	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_002381	exon3	c.850delG	p.E284fs	.	.	137	10	145	0	.	.
MB21D2	151963	hgsc.bcm.edu;broad.mit.edu	37	3	192516280	192516280	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MB21D2	NM_178496	exon2	c.1371delA	p.K457fs	.	.	199	14	147	0	.	70
MBP	4155	hgsc.bcm.edu;broad.mit.edu	37	18	74778307	74778307	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MBP	NM_001025100	exon3	c.86delA	p.K29fs	.	.	267	16	229	0	.	515
MCCC1	56922	hgsc.bcm.edu	37	3	182751818	182751818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MCCC1	NM_020166	exon14	c.T1642C	p.S548P	.	.	111	2	67	0	.	92
MCM9	254394	hgsc.bcm.edu;broad.mit.edu	37	6	119238756	119238756	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MCM9	NM_017696	exon4	c.874delT	p.W292fs	.	.	203	13	106	0	.	515
MDK	4192	hgsc.bcm.edu;broad.mit.edu	37	11	46403892	46403892	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MDK	NM_001012333	exon3	c.125delG	p.W42fs	.	.	139	10	83	0	.	90
MDN1	23195	bcgsc.ca	37	6	90362784	90362784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MDN1	NM_014611	exon94	c.A15752G	p.N5251S	.	.	520	14	344	2	.	100
MDN1	23195	hgsc.bcm.edu;broad.mit.edu	37	6	90382309	90382309	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MDN1	NM_014611	exon81	c.13587delA	p.K4529fs	.	.	197	12	149	0	.	100
MDN1	23195	hgsc.bcm.edu;broad.mit.edu	37	6	90504517	90504517	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MDN1	NM_014611	exon3	c.333delT	p.F111fs	.	.	158	10	96	0	.	100
MEAF6	64769	hgsc.bcm.edu;broad.mit.edu	37	1	37961495	37961495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MEAF6	NM_022756	exon7	c.588delA	p.K196fs	.	.	200	12	132	0	.	90
MECOM	2122	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	169099249	169099249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MECOM	NM_004991	exon2	c.G101A	p.G34E	.	.	153	51	92	0	.	853
MED12	9968	hgsc.bcm.edu	37	X	70344673	70344673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MED12	NM_005120	exon14	c.C2034A	p.D678E	.	.	101	2	89	0	.	272
MED13	9969	hgsc.bcm.edu;broad.mit.edu	37	17	60045420	60045420	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MED13	NM_005121	exon18	c.4167delT	p.F1389fs	.	.	269	18	225	0	.	136
MED13	9969	hgsc.bcm.edu;broad.mit.edu	37	17	60050166	60050166	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MED13	NM_005121	exon17	c.3889delA	p.R1297fs	.	.	167	10	138	0	.	136
MED13	9969	hgsc.bcm.edu;broad.mit.edu	37	17	60087940	60087940	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MED13	NM_005121	exon9	c.1938delT	p.F646fs	.	.	172	12	120	0	.	136
MEPE	56955	bcgsc.ca	37	4	88767437	88767437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MEPE	NM_020203	exon4	c.1417delC	p.P473fs	.	.	48	5	82	0	.	93
METTL17	64745	hgsc.bcm.edu;broad.mit.edu	37	14	21462740	21462740	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	METTL17	NM_022734	exon8	c.736delT	p.F246fs	.	.	173	11	162	0	.	94
MFN1	55669	bcgsc.ca	37	3	179096509	179096509	+	Silent	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MFN1	NM_033540	exon14	c.T1569G	p.P523P	.	.	247	7	166	2	.	155
MGAM	8972	bcgsc.ca	37	7	141734607	141734607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MGAM	NM_004668	exon16	c.G1925A	p.G642D	.	.	154	6	109	0	.	70
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu	37	12	86383211	86383211	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MGAT4C	NM_013244	exon5	c.114delT	p.F38fs	.	.	180	11	207	0	.	93
MGME1	92667	hgsc.bcm.edu	37	20	17950850	17950850	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_052865	exon2	c.T348C	p.D116D	.	.	119	3	131	0	.	.
MIA3	375056	hgsc.bcm.edu;broad.mit.edu	37	1	222824154	222824154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MIA3	NM_198551	exon11	c.3818delA	p.E1273fs	.	.	251	17	145	0	.	98
MIR1179	100302235	hgsc.bcm.edu;broad.mit.edu	37	15	89151344	89151344	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	165	10	129	0	.	.
MIR15A	406948	hgsc.bcm.edu;broad.mit.edu	37	13	50623292	50623292	+	RNA	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	152	11	219	0	.	.
MIR205HG	642587	hgsc.bcm.edu	37	1	209602687	209602687	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001104548	exon2	c.45delC	p.G15fs	.	.	164	10	68	0	.	.
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu	37	14	45696022	45696022	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MIS18BP1	NM_018353	exon10	c.1764delA	p.K588fs	.	.	153	10	139	0	.	90
MKI67	4288	bcgsc.ca	37	10	129903803	129903803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKI67	NM_002417	exon13	c.A6301C	p.I2101L	.	.	449	11	395	0	.	519
MKI67IP	84365	hgsc.bcm.edu;broad.mit.edu	37	2	122485323	122485323	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKI67IP	NM_032390	exon7	c.859delA	p.R287fs	.	.	155	11	148	0	.	90
MKI67IP	84365	hgsc.bcm.edu;broad.mit.edu	37	2	122485457	122485457	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKI67IP	NM_032390	exon7	c.725delT	p.L242fs	.	.	199	12	167	0	.	90
MKL2	57496	hgsc.bcm.edu	37	16	14346343	14346343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKL2	NM_014048	exon15	c.A2537G	p.Q846R	.	.	83	3	85	0	.	95
MKNK2	2872	hgsc.bcm.edu;bcgsc.ca	37	19	2041918	2041918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKNK2	NM_017572	exon11	c.T866C	p.L289P	.	.	54	4	71	0	.	978
MLL3	58508	hgsc.bcm.edu;broad.mit.edu	37	7	151848557	151848557	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL3	NM_170606	exon50	c.12636delA	p.K4212fs	.	.	158	11	92	0	.	1398
MLL3	58508	hgsc.bcm.edu;broad.mit.edu	37	7	151874013	151874013	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL3	NM_170606	exon38	c.8525delA	p.N2842fs	.	.	212	15	182	0	.	1398
MLL	4297	hgsc.bcm.edu;broad.mit.edu	37	11	118347674	118347674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL	NM_001197104	exon4	c.3311delT	p.I1104fs	.	.	164	10	157	0	.	1255
MLL4	8085	hgsc.bcm.edu;broad.mit.edu	37	19	36223328	36223328	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL4	NM_014727	exon28	c.5878delC	p.P1960fs	.	.	167	10	161	0	.	697
MLL5	55904	hgsc.bcm.edu;broad.mit.edu	37	7	104715257	104715257	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL5	NM_018682	exon7	c.724delA	p.K242fs	.	.	168	12	130	0	.	93
MLL5	55904	hgsc.bcm.edu;broad.mit.edu	37	7	104745930	104745930	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL5	NM_018682	exon17	c.2241delA	p.G747fs	.	.	121	10	66	0	.	93
MMP17	4326	hgsc.bcm.edu;broad.mit.edu	37	12	132335715	132335715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MMP17	NM_016155	exon10	c.1708delC	p.P570fs	.	.	153	10	82	0	.	226
MMP19	4327	hgsc.bcm.edu;broad.mit.edu	37	12	56233389	56233389	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MMP19	NM_002429	exon5	c.657delG	p.G219fs	.	.	183	12	185	0	.	227
MMP8	4317	bcgsc.ca	37	11	102595493	102595493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MMP8	NM_002424	exon1	c.A94T	p.T32S	.	.	226	6	168	0	.	229
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158813107	158813107	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MNDA	NM_002432	exon3	c.304delA	p.K102fs	.	.	117	12	75	0	.	94
MOB2	81532	hgsc.bcm.edu;broad.mit.edu	37	11	1492622	1492622	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001172223	exon4	c.393delG	p.G131fs	.	.	180	12	135	0	.	.
MOCOS	55034	hgsc.bcm.edu;broad.mit.edu	37	18	33800091	33800091	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MOCOS	NM_017947	exon9	c.1871delT	p.V624fs	.	.	135	10	122	0	.	91
MPDU1	9526	bcgsc.ca	37	17	7490329	7490329	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MPDU1	NM_004870	exon5	c.501delG	p.V167fs	.	.	34	5	65	0	.	90
MPDZ	8777	hgsc.bcm.edu	37	9	13125334	13125334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MPDZ	NM_003829	exon35	c.A4688G	p.E1563G	.	.	114	4	135	0	.	231
MPL	4352	hgsc.bcm.edu	37	1	43812586	43812586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MPL	NM_005373	exon8	c.A1289G	p.E430G	.	.	87	4	39	0	.	9885
MPRIP	23164	broad.mit.edu;bcgsc.ca	37	17	17062131	17062131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MPRIP	NM_015134	exon14	c.1861delG	p.G621fs	.	.	63	7	87	0	.	90
MRC1	4360	hgsc.bcm.edu	37	10	17917243	17917243	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRC1	NM_002438	exon17	c.2528delA	p.E843fs	.	.	178	11	141	0	.	68
MRGPRG	386746	hgsc.bcm.edu;broad.mit.edu	37	11	3239346	3239346	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRGPRG	NM_001164377	exon1	c.698delC	p.P233fs	.	.	221	14	93	0	.	68
MROH2B	133558	bcgsc.ca	37	5	41061718	41061718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_173489	exon6	c.T569C	p.F190S	.	.	232	9	141	0	.	.
MROH5	389690	bcgsc.ca	37	8	142490080	142490080	+	RNA	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	304	8	94	0	.	.
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu	37	3	131188575	131188575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPL3	NM_007208	exon8	c.781delA	p.M261fs	.	.	153	10	121	0	.	90
MRPS16	51021	ucsc.edu	37	10	75008965	75008965	+	RNA	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS16	.	.	.	.	.	.	69	1	67	0	.	90
MRPS18B	28973	hgsc.bcm.edu;broad.mit.edu	37	6	30587360	30587360	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS18B	NM_014046	exon2	c.169delA	p.K57fs	.	.	154	10	103	0	.	91
MRPS22	56945	hgsc.bcm.edu	37	3	139074572	139074572	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS22	NM_020191	exon7	c.A927G	p.P309P	.	.	243	4	154	0	.	93
MRPS5	64969	bcgsc.ca	37	2	95766582	95766582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS5	NM_031902	exon9	c.A868G	p.I290V	.	.	53	5	49	0	.	92
MRPS5	64969	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95767468	95767468	+	Missense_Mutation	SNP	C	C	A	rs199914429	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS5	NM_031902	exon8	c.G764T	p.G255V	.	.	110	23	91	0	C|0.999;G|0.000	92
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu	37	9	103279042	103279042	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001198812	exon5	c.A771G	p.A257A	.	.	113	2	86	0	.	.
MSI1	4440	hgsc.bcm.edu;broad.mit.edu	37	12	120784098	120784098	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MSI1	NM_002442	exon13	c.887delC	p.P296fs	.	.	151	11	64	0	.	577
MST1	4485	bcgsc.ca	37	3	49722902	49722902	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MST1	NM_020998	exon13	c.1423+2T>A	.	.	.	620	44	311	5	.	278
MST1	4485	bcgsc.ca	37	3	49722912	49722912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MST1	NM_020998	exon12	c.A1415C	p.D472A	.	.	555	55	267	3	.	278
MST1	4485	hgsc.bcm.edu;bcgsc.ca	37	3	49722913	49722913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MST1	NM_020998	exon12	c.G1414A	p.D472N	.	.	553	46	262	0	.	278
MTCP1	4515	bcgsc.ca	37	X	154294014	154294014	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTCP1	NM_001018025	exon3	c.156delT	p.G52fs	.	.	41	4	71	0	.	658
MTERFD2	130916	hgsc.bcm.edu	37	2	242039228	242039228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTERFD2	NM_182501	exon2	c.A103G	p.T35A	.	.	104	3	103	0	.	91
MTF1	4520	hgsc.bcm.edu;bcgsc.ca	37	1	38288327	38288327	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTF1	NM_005955	exon9	c.A1233G	p.T411T	.	.	63	4	32	0	.	92
MTHFD1L	25902	hgsc.bcm.edu;broad.mit.edu	37	6	151198808	151198808	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTHFD1L	NM_001242767	exon3	c.351delT	p.N117fs	.	.	156	11	118	0	.	292
MTRF1L	54516	hgsc.bcm.edu;broad.mit.edu	37	6	153323592	153323592	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTRF1L	NM_019041	exon1	c.229delG	p.E77fs	.	.	227	14	190	0	.	90
MUC16	94025	bcgsc.ca	37	19	9048344	9048344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC16	NM_024690	exon5	c.G33287A	p.G11096E	.	.	152	5	117	1	.	566
MUC20	200958	bcgsc.ca	37	3	195451882	195451882	+	Silent	SNP	G	G	A	rs200066071		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152673	exon2	c.G408A	p.R136R	.	.	1809	34	1301	1	G|0.998;A|0.002	.
MUC2	4583	hgsc.bcm.edu;bcgsc.ca	37	11	1093368	1093368	+	Silent	SNP	G	G	A	rs111440994		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC2	NM_002457	exon30	c.G5187A	p.T1729T	.	.	127	7	74	0	.	90
MUC2	4583	hgsc.bcm.edu;bcgsc.ca	37	11	1094691	1094691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC2	NM_002457	exon32	c.G5767T	p.G1923W	.	.	164	7	101	0	.	90
MUC4	4585	hgsc.bcm.edu	37	3	195506980	195506980	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC4	NM_018406	exon2	c.11471delC	p.P3824fs	.	.	150	11	71	0	.	90
MUC4	4585	hgsc.bcm.edu	37	3	195511523	195511523	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC4	NM_018406	exon2	c.6928delG	p.A2310fs	.	.	133	11	67	0	.	90
MUC4	4585	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195508423	195508423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC4	NM_018406	exon2	c.C10028T	p.T3343I	.	.	304	115	159	0	.	90
MUCL1	118430	hgsc.bcm.edu;broad.mit.edu	37	12	55251994	55251994	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUCL1	NM_058173	exon4	c.241delG	p.G81fs	.	.	198	12	180	0	.	68
MXRA5	25878	hgsc.bcm.edu	37	X	3241039	3241039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MXRA5	NM_015419	exon5	c.A2687G	p.E896G	.	.	111	2	106	0	.	136
MYCL1	4610	hgsc.bcm.edu;broad.mit.edu	37	1	40366859	40366859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYCL1	NM_005376	exon2	c.338delG	p.G113fs	.	.	303	19	176	0	.	847
MYH11	4629	hgsc.bcm.edu;broad.mit.edu	37	16	15876271	15876271	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH11	NM_001040114	exon7	c.718delA	p.T240fs	.	.	144	11	147	0	.	666
MYH14	79784	hgsc.bcm.edu;broad.mit.edu	37	19	50812903	50812903	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH14	NM_001145809	exon43	c.5967delC	p.G1989fs	.	.	143	10	155	0	.	23
MYH2	4620	broad.mit.edu;bcgsc.ca	37	17	10433334	10433334	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH2	NM_017534	exon23	c.2755delA	p.I919fs	.	.	371	18	481	0	.	194
MYH7	4625	hgsc.bcm.edu;broad.mit.edu	37	14	23894966	23894966	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH7	NM_000257	exon20	c.2224delG	p.A742fs	.	.	164	11	119	0	.	94
MYH8	4626	hgsc.bcm.edu;broad.mit.edu	37	17	10318665	10318665	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH8	NM_002472	exon8	c.685delC	p.L229fs	.	.	132	10	168	0	.	101
MYL6	4637	hgsc.bcm.edu	37	12	56553921	56553921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYL6	NM_079423	exon4	c.T338C	p.L113P	.	.	85	4	75	0	.	91
MYO10	4651	hgsc.bcm.edu;broad.mit.edu	37	5	16762178	16762178	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO10	NM_012334	exon16	c.1632delT	p.F544fs	.	.	192	13	101	0	.	3
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu	37	17	18077149	18077149	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO15A	NM_016239	exon64	c.10405delC	p.P3469fs	.	.	234	14	216	0	.	97
MYO18A	399687	broad.mit.edu;bcgsc.ca	37	17	27420440	27420440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO18A	NM_078471	exon32	c.4827delA	p.K1609fs	.	.	71	7	76	0	.	22
MYO3A	53904	hgsc.bcm.edu	37	10	26462846	26462846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO3A	NM_017433	exon30	c.T3653C	p.V1218A	.	.	107	3	90	0	.	1007
MYO5A	4644	hgsc.bcm.edu	37	15	52645812	52645812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO5A	NM_000259	exon27	c.A3611G	p.E1204G	.	.	152	3	139	0	.	93
MYO5B	4645	bcgsc.ca	37	18	47527744	47527744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO5B	NM_001080467	exon5	c.T493C	p.S165P	.	.	138	5	136	1	.	72
MYO5C	55930	hgsc.bcm.edu;bcgsc.ca	37	15	52571842	52571842	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO5C	NM_018728	exon3	c.T168C	p.S56S	.	.	79	4	61	0	.	145
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu	37	11	76867058	76867058	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO7A	NM_001127179	exon5	c.391delC	p.P131fs	.	.	140	11	92	0	.	138
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu	37	11	76917218	76917218	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO7A	NM_000260	exon41	c.5713delA	p.K1905fs	.	.	129	10	88	0	.	138
MYO7B	4648	broad.mit.edu;bcgsc.ca	37	2	128379653	128379653	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO7B	NM_001080527	exon27	c.3544delC	p.P1182fs	.	.	96	10	78	0	.	47
MYO9A	4649	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72193622	72193622	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO9A	NM_006901	exon23	c.C3060T	p.L1020L	.	.	140	57	132	0	.	93
MYOF	26509	hgsc.bcm.edu;broad.mit.edu	37	10	95157188	95157188	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYOF	NM_133337	exon14	c.1247delA	p.N416fs	.	.	159	10	126	0	.	93
MYOM1	8736	hgsc.bcm.edu	37	18	3151804	3151804	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYOM1	NM_003803	exon12	c.T1731C	p.G577G	.	.	98	4	91	0	.	94
MYOM3	127294	bcgsc.ca	37	1	24416063	24416063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYOM3	NM_152372	exon14	c.C1579G	p.R527G	.	.	182	6	81	0	.	93
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu	37	16	48596281	48596281	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	N4BP1	NM_153029	exon2	c.273delT	p.F91fs	.	.	142	9	127	0	.	22
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu	37	4	40123872	40123872	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	N4BP2	NM_018177	exon9	c.4141delC	p.P1381fs	.	.	250	16	197	0	.	602
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu	37	11	89883695	89883695	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NAALAD2	NM_005467	exon5	c.529delA	p.K177fs	.	.	166	11	136	0	.	92
NAGK	55577	hgsc.bcm.edu	37	2	71302707	71302707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NAGK	NM_017567	exon7	c.T740C	p.L247P	.	.	96	4	118	0	.	115
NALCN	259232	hgsc.bcm.edu;broad.mit.edu	37	13	102030966	102030966	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NALCN	NM_052867	exon4	c.330delT	p.F110fs	.	.	169	11	123	0	.	167
NAP1L1	4673	bcgsc.ca	37	12	76449901	76449901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NAP1L1	NM_004537	exon7	c.A470G	p.K157R	.	.	363	13	354	0	.	92
NARS2	79731	hgsc.bcm.edu	37	11	78154722	78154722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NARS2	NM_024678	exon12	c.A1247G	p.E416G	.	.	82	3	75	0	.	92
NASP	4678	hgsc.bcm.edu;broad.mit.edu	37	1	46073055	46073055	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NASP	NM_002482	exon6	c.472delA	p.K158fs	.	.	238	17	138	0	.	91
NAT2	10	bcgsc.ca	37	8	18258201	18258201	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NAT2	NM_000015	exon2	c.688delG	p.G230fs	.	.	53	5	77	0	.	516
NBEAL1	65065	bcgsc.ca	37	2	203977819	203977819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NBEAL1	NM_001114132	exon16	c.T2197C	p.S733P	.	.	196	7	169	0	.	92
NBEAL1	65065	hgsc.bcm.edu	37	2	204045127	204045127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NBEAL1	NM_001114132	exon42	c.T6400C	p.F2134L	.	.	90	4	83	0	.	92
NBPF3	84224	hgsc.bcm.edu	37	1	21806573	21806573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NBPF3	NM_032264	exon11	c.T1238G	p.F413C	.	.	237	30	71	0	.	92
NCAPH2	29781	hgsc.bcm.edu;broad.mit.edu	37	22	50957703	50957703	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NCAPH2	NM_152299	exon9	c.815delC	p.A272fs	.	.	188	12	175	0	.	92
NCBP1	4686	hgsc.bcm.edu;broad.mit.edu	37	9	100410326	100410326	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NCBP1	NM_002486	exon8	c.718delA	p.K240fs	.	.	146	11	168	0	.	90
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu	37	2	183822266	183822266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NCKAP1	NM_205842	exon20	c.1958delA	p.K653fs	.	.	153	10	164	0	.	92
NDNF	79625	hgsc.bcm.edu;broad.mit.edu	37	4	121966873	121966873	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NDNF	NM_024574	exon2	c.120delT	p.F40fs	.	.	226	15	188	0	.	90
NDST3	9348	hgsc.bcm.edu;broad.mit.edu	37	4	118975821	118975821	+	Frame_Shift_Del	DEL	T	T	-	rs35086179		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NDST3	NM_004784	exon2	c.756delT	p.A252fs	.	.	182	11	174	0	.	153
NDUFAF1	51103	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41688824	41688824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NDUFAF1	NM_016013	exon2	c.G434T	p.G145V	.	.	269	94	250	0	.	91
NDUFS4	4724	bcgsc.ca	37	5	52856505	52856505	+	Missense_Mutation	SNP	T	T	C	rs149323691	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NDUFS4	NM_002495	exon1	c.T13C	p.S5P	.	.	197	10	111	1	T|0.999;C|0.001	90
NEIL3	55247	bcgsc.ca	37	4	178274566	178274566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NEIL3	NM_018248	exon8	c.A1144G	p.K382E	.	.	120	5	86	0	.	660
NEK10	152110	hgsc.bcm.edu	37	3	27335088	27335088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NEK10	NM_199347	exon17	c.T1364C	p.L455P	.	.	101	3	59	0	.	695
NEURL4	84461	hgsc.bcm.edu	37	17	7224736	7224736	+	Missense_Mutation	SNP	T	T	C	rs117553236	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NEURL4	NM_032442	exon19	c.A3142G	p.M1048V	.	.	83	4	106	0	T|0.996;G|0.004	46
NFATC3	4775	hgsc.bcm.edu	37	16	68156826	68156826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NFATC3	NM_173163	exon2	c.A1040G	p.Q347R	.	.	75	4	71	0	.	92
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33295418	33295418	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NFX1	NM_147134	exon2	c.G1026A	p.T342T	.	.	33	14	27	0	.	91
NFYC	4802	hgsc.bcm.edu;broad.mit.edu	37	1	41204559	41204559	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NFYC	NM_001142587	exon2	c.44delC	p.A15fs	.	.	196	12	97	0	.	289
NHLRC2	374354	hgsc.bcm.edu;broad.mit.edu	37	10	115657964	115657964	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NHLRC2	NM_198514	exon6	c.1135delA	p.K379fs	.	.	270	16	227	0	.	91
NLE1	54475	hgsc.bcm.edu	37	17	33460449	33460449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NLE1	NM_018096	exon11	c.T1283C	p.L428P	.	.	102	6	97	0	.	290
NLRP7	199713	hgsc.bcm.edu	37	19	55445101	55445101	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NLRP7	NM_001127255	exon8	c.A2478G	p.E826E	.	.	97	4	78	0	.	291
NNT	23530	bcgsc.ca	37	5	43677825	43677825	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NNT	NM_012343	exon19	c.2795-2A>G	.	.	.	106	4	83	0	.	92
NNT	23530	hgsc.bcm.edu;broad.mit.edu	37	5	43644296	43644296	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NNT	NM_182977	exon8	c.967delA	p.K323fs	.	.	178	11	109	0	.	92
NOP2	4839	bcgsc.ca	37	12	6672800	6672800	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NOP2	NM_001258309	exon8	c.767delC	p.P256fs	.	.	52	5	67	0	.	92
NOTCH4	4855	hgsc.bcm.edu	37	6	32191665	32191665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NOTCH4	NM_004557	exon1	c.T41C	p.L14P	.	.	95	3	59	0	.	1321
NOVA2	4858	hgsc.bcm.edu;broad.mit.edu	37	19	46464290	46464290	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NOVA2	NM_002516	exon2	c.207delC	p.S69fs	.	.	129	10	117	0	.	226
NOX5	79400	hgsc.bcm.edu	37	15	69331259	69331259	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NOX5	NM_024505	exon9	c.T1434C	p.Y478Y	.	.	168	2	148	0	.	136
NPEPL1	79716	hgsc.bcm.edu	37	20	57269500	57269500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_024663	exon3	c.T359C	p.V120A	.	.	107	4	69	0	.	.
NPHS1	4868	hgsc.bcm.edu	37	19	36333298	36333298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NPHS1	NM_004646	exon18	c.T2489C	p.L830P	.	.	71	5	36	0	.	49
NPS	594857	hgsc.bcm.edu;broad.mit.edu	37	10	129350732	129350732	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NPS	NM_001030013	exon3	c.99delA	p.G33fs	.	.	119	10	129	0	.	22
NPY1R	4886	hgsc.bcm.edu;broad.mit.edu	37	4	164246487	164246487	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NPY1R	NM_000909	exon3	c.1123delA	p.I375fs	.	.	193	12	204	0	.	523
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu	37	2	157186374	157186374	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NR4A2	NM_006186	exon3	c.325delC	p.Q109fs	.	.	173	11	146	0	.	189
NRK	203447	hgsc.bcm.edu	37	X	105153617	105153617	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NRK	NM_198465	exon13	c.T1984C	p.L662L	.	.	102	4	73	0	.	630
NSFL1C	55968	bcgsc.ca	37	20	1438881	1438881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NSFL1C	NM_016143	exon3	c.A242G	p.D81G	.	.	142	5	141	0	.	90
NSUN6	221078	hgsc.bcm.edu	37	10	18837156	18837156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NSUN6	NM_182543	exon10	c.T1082C	p.L361P	.	.	92	3	105	0	.	92
NT5DC1	221294	hgsc.bcm.edu;broad.mit.edu	37	6	116565118	116565118	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NT5DC1	NM_152729	exon12	c.1299delA	p.S433fs	.	.	255	17	192	0	.	226
NT5DC2	64943	hgsc.bcm.edu;broad.mit.edu	37	3	52562508	52562508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NT5DC2	NM_001134231	exon5	c.596delG	p.G199fs	.	.	411	26	256	0	.	514
NTM	50863	hgsc.bcm.edu	37	11	132177637	132177637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NTM	NM_001144059	exon4	c.A581G	p.E194G	.	.	115	4	50	0	.	95
NUP155	9631	hgsc.bcm.edu	37	5	37352917	37352917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP155	NM_153485	exon5	c.C478T	p.H160Y	.	.	103	4	67	0	.	205
NUP155	9631	hgsc.bcm.edu;broad.mit.edu	37	5	37309279	37309279	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP155	NM_153485	exon24	c.2719delA	p.I907fs	.	.	199	12	176	0	.	205
NUP205	23165	hgsc.bcm.edu;broad.mit.edu	37	7	135277907	135277907	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP205	NM_015135	exon12	c.1797delT	p.A599fs	.	.	200	12	139	0	.	207
NUP214	8021	hgsc.bcm.edu	37	9	134015961	134015961	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP214	NM_005085	exon11	c.T1158C	p.A386A	.	.	113	3	88	0	.	1131
NUP54	53371	bcgsc.ca	37	4	77065318	77065318	+	Silent	SNP	C	C	T	rs76406406	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP54	NM_017426	exon3	c.G279A	p.Q93Q	.	.	146	15	130	15	C|0.995;T|0.005	205
NUP85	79902	hgsc.bcm.edu;broad.mit.edu	37	17	73221299	73221299	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP85	NM_024844	exon8	c.699delG	p.M233fs	.	.	151	10	93	0	.	205
NUP93	9688	hgsc.bcm.edu;bcgsc.ca	37	16	56867148	56867148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP93	NM_014669	exon13	c.A1367G	p.N456S	.	.	150	6	127	0	.	205
OBSCN	84033	bcgsc.ca	37	1	228434468	228434468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OBSCN	NM_001271223	exon14	c.G4273C	p.G1425R	.	.	307	12	158	0	.	403
OBSCN	84033	hgsc.bcm.edu	37	1	228430955	228430955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OBSCN	NM_001271223	exon11	c.3277delA	p.T1093fs	.	.	219	13	116	0	.	403
OC90	729330	hgsc.bcm.edu	37	8	133036828	133036828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OC90	NM_001080399	exon14	c.A1334G	p.D445G	.	.	187	7	53	0	.	206
OCIAD1	54940	hgsc.bcm.edu;broad.mit.edu	37	4	48859372	48859372	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OCIAD1	NM_001168254	exon8	c.705delA	p.P235fs	.	.	220	14	197	0	.	68
OGFR	11054	hgsc.bcm.edu	37	20	61443731	61443731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OGFR	NM_007346	exon7	c.A764G	p.D255G	.	.	78	6	47	0	.	68
OGT	8473	hgsc.bcm.edu;broad.mit.edu	37	X	70781722	70781722	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OGT	NM_181672	exon15	c.1949delT	p.L650fs	.	.	146	10	173	0	.	113
OR10A3	26496	hgsc.bcm.edu;broad.mit.edu	37	11	7960747	7960747	+	Frame_Shift_Del	DEL	A	A	-	rs35194212		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR10A3	NM_001003745	exon1	c.321delT	p.F107fs	.	.	163	13	89	0	.	69
OR11H12	440153	bcgsc.ca	37	14	19378508	19378508	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR11H12	NM_001013354	exon1	c.915delT	p.Y305X	.	.	565	6	494	0	.	24
OR11H12	440153	broad.mit.edu;bcgsc.ca	37	14	19378361	19378361	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR11H12	NM_001013354	exon1	c.768delT	p.C256fs	.	.	934	15	830	0	.	24
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu	37	1	248790265	248790265	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR2T11	NM_001001964	exon1	c.165delC	p.P55fs	.	.	200	12	104	0	.	69
OR2T27	403239	bcgsc.ca	37	1	248814081	248814081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR2T27	NM_001001824	exon1	c.T105G	p.F35L	.	.	421	11	246	0	.	47
OR2T8	343172	broad.mit.edu;bcgsc.ca	37	1	248084855	248084855	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR2T8	NM_001005522	exon1	c.536delC	p.T179fs	.	.	559	20	360	0	.	68
OR2T8	343172	hgsc.bcm.edu;broad.mit.edu	37	1	248084746	248084746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR2T8	NM_001005522	exon1	c.427delA	p.N143fs	.	.	76	10	19	0	.	68
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu	37	11	51411652	51411652	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR4A5	NM_001005272	exon1	c.744delT	p.F248fs	.	.	143	13	86	0	.	92
OR4C16	219428	bcgsc.ca	37	11	55339830	55339830	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR4C16	NM_001004701	exon1	c.C227G	p.T76S	.	.	215	7	160	1	.	70
OR4X1	390113	hgsc.bcm.edu;broad.mit.edu	37	11	48286313	48286313	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR4X1	NM_001004726	exon1	c.901delG	p.G301fs	.	.	156	11	119	0	.	71
OR52B6	340980	bcgsc.ca	37	11	5602930	5602930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR52B6	NM_001005162	exon1	c.T824C	p.L275P	.	.	348	10	253	1	.	69
OR52B6	340980	hgsc.bcm.edu;broad.mit.edu	37	11	5602546	5602546	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR52B6	NM_001005162	exon1	c.440delC	p.S147fs	.	.	160	11	104	0	.	69
OR52E4	390081	bcgsc.ca	37	11	5906074	5906074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR52E4	NM_001005165	exon1	c.G552T	p.R184S	.	.	291	7	223	0	.	70
OR52E8	390079	hgsc.bcm.edu;broad.mit.edu	37	11	5878820	5878820	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR52E8	NM_001005168	exon1	c.113delT	p.F38fs	.	.	216	19	128	0	.	70
OR5H1	26341	broad.mit.edu;bcgsc.ca	37	3	97852022	97852022	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR5H1	NM_001005338	exon1	c.481delG	p.G161fs	.	.	570	16	461	0	.	136
OR5M11	219487	hgsc.bcm.edu	37	11	56310224	56310224	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001005245	exon1	c.C510A	p.S170S	.	.	131	7	84	0	.	.
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu	37	11	56310222	56310222	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001005245	exon1	c.512delG	p.S171fs	.	.	133	12	84	0	.	.
OR6C68	403284	hgsc.bcm.edu;broad.mit.edu	37	12	55886489	55886489	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR6C68	NM_001005519	exon1	c.328delT	p.F110fs	.	.	154	11	145	0	.	69
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu	37	19	14991635	14991635	+	Frame_Shift_Del	DEL	A	A	-	rs35659165		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR7A17	NM_030901	exon1	c.533delT	p.F178fs	.	.	157	10	128	0	.	68
OR7E24	26648	bcgsc.ca	37	19	9361741	9361741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR7E24	NM_001079935	exon1	c.T22C	p.F8L	.	.	96	5	69	1	.	47
OR8I2	120586	hgsc.bcm.edu	37	11	55861691	55861691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR8I2	NM_001003750	exon1	c.T908C	p.V303A	.	.	48	4	24	0	.	113
OR8J1	219477	hgsc.bcm.edu	37	11	56128630	56128630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR8J1	NM_001005205	exon1	c.A908G	p.Q303R	.	.	126	3	76	0	.	70
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu	37	11	56114060	56114060	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR8K1	NM_001002907	exon1	c.546delT	p.Y182fs	.	.	193	13	127	0	.	70
ORC2	4999	hgsc.bcm.edu	37	2	201778021	201778021	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ORC2	NM_006190	exon17	c.G1644A	p.K548K	.	.	77	2	70	0	.	209
OSBPL1A	114876	bcgsc.ca	37	18	21745097	21745097	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OSBPL1A	NM_080597	exon27	c.2682delA	p.K894fs	.	.	169	17	198	2	.	94
OSBPL6	114880	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179226415	179226415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OSBPL6	NM_001201480	exon14	c.C1235G	p.S412C	.	.	234	91	258	0	.	69
OSBPL7	114881	hgsc.bcm.edu	37	17	45888158	45888158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OSBPL7	NM_145798	exon17	c.A1781G	p.E594G	.	.	88	2	63	0	.	68
OXCT1	5019	hgsc.bcm.edu;broad.mit.edu	37	5	41862804	41862804	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OXCT1	NM_000436	exon2	c.127delT	p.Y43fs	.	.	213	15	163	0	.	133
OXSR1	9943	hgsc.bcm.edu	37	3	38207429	38207429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OXSR1	NM_005109	exon1	c.A62G	p.E21G	.	.	189	6	130	0	.	311
P2RX3	5024	hgsc.bcm.edu;broad.mit.edu	37	11	57118235	57118235	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	P2RX3	NM_002559	exon8	c.706-1G>-	.	.	.	196	14	145	0	.	68
P2RY12	64805	hgsc.bcm.edu;broad.mit.edu	37	3	151055960	151055960	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	P2RY12	NM_022788	exon3	c.674delG	p.G225fs	.	.	168	13	109	0	.	501
PA2G4	5036	hgsc.bcm.edu	37	12	56503708	56503708	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PA2G4	NM_006191	exon7	c.A618G	p.T206T	.	.	114	3	105	0	.	68
PABPC4	8761	hgsc.bcm.edu;broad.mit.edu	37	1	40028016	40028016	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PABPC4	NM_001135653	exon13	c.1741delC	p.Q581fs	.	.	251	16	135	0	.	68
PAFAH1B2	5049	hgsc.bcm.edu;broad.mit.edu	37	11	117038299	117038299	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PAFAH1B2	NM_002572	exon6	c.574delT	p.F192fs	.	.	173	11	123	0	.	204
PAK7	57144	hgsc.bcm.edu	37	20	9538333	9538333	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PAK7	NM_177990	exon7	c.T1665C	p.A555A	.	.	96	3	79	0	.	1434
PALD1	27143	bcgsc.ca	37	10	72300935	72300935	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014431	exon16	c.C1986T	p.L662L	.	.	137	5	100	0	.	.
PALM3	342979	hgsc.bcm.edu;broad.mit.edu	37	19	14164636	14164636	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PALM3	NM_001145028	exon6	c.1803delC	p.P601fs	.	.	140	11	96	0	.	24
PANX1	24145	hgsc.bcm.edu	37	11	93912932	93912932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PANX1	NM_015368	exon4	c.T710C	p.L237P	.	.	117	6	90	0	.	68
PAPD5	64282	hgsc.bcm.edu;broad.mit.edu	37	16	50257145	50257145	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PAPD5	NM_001040284	exon8	c.1183delT	p.F395fs	.	.	164	11	147	0	.	205
PARG	8505	hgsc.bcm.edu	37	10	51363013	51363013	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PARG	NM_003631	exon3	c.1059delC	p.F353fs	.	.	19	10	10	0	.	948
PARP14	54625	hgsc.bcm.edu;broad.mit.edu	37	3	122423544	122423544	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PARP14	NM_017554	exon8	c.3489delT	p.T1163fs	.	.	225	14	205	0	.	525
PARPBP	55010	hgsc.bcm.edu;broad.mit.edu	37	12	102589882	102589882	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_017915	exon11	c.1553delA	p.E518fs	.	.	212	14	139	0	.	.
PBK	55872	hgsc.bcm.edu	37	8	27668599	27668599	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PBK	NM_018492	exon7	c.A648G	p.E216E	.	.	94	4	139	0	.	358
PBOV1	59351	bcgsc.ca	37	6	138539187	138539187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_021635	exon1	c.A346C	p.T116P	.	.	275	24	206	4	.	.
PBOV1	59351	hgsc.bcm.edu	37	6	138539188	138539188	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_021635	exon1	c.G345A	p.Q115Q	.	.	274	15	205	0	.	.
PBX4	80714	hgsc.bcm.edu;bcgsc.ca	37	19	19681414	19681414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PBX4	NM_025245	exon3	c.A422G	p.E141G	.	.	123	5	90	0	.	154
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu	37	10	55582820	55582820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCDH15	NM_001142763	exon35	c.4687delA	p.I1563fs	.	.	181	11	167	0	.	193
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu	37	5	140772463	140772463	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014004	exon1	c.83delG	p.R28fs	.	.	164	10	77	0	.	.
PCF11	51585	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82877693	82877693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCF11	NM_015885	exon5	c.T1754C	p.V585A	.	.	122	57	100	0	.	23
PCGF5	84333	hgsc.bcm.edu	37	10	93000241	93000241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCGF5	NM_001256549	exon3	c.T113C	p.F38S	.	.	58	3	76	0	.	226
PCIF1	63935	hgsc.bcm.edu;broad.mit.edu	37	20	44569759	44569759	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCIF1	NM_022104	exon7	c.586delC	p.P196fs	.	.	168	10	133	0	.	91
PCMTD1	115294	hgsc.bcm.edu;broad.mit.edu	37	8	52773460	52773460	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCMTD1	NM_052937	exon2	c.252delT	p.F84fs	.	.	204	15	93	0	.	68
PCNXL4	64430	hgsc.bcm.edu;broad.mit.edu	37	14	60592492	60592492	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_022495	exon9	c.2516delT	p.I839fs	.	.	119	10	99	0	.	.
PCYT1A	5130	hgsc.bcm.edu;broad.mit.edu	37	3	195968954	195968954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCYT1A	NM_005017	exon8	c.573delT	p.F191fs	.	.	132	10	83	0	.	90
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu	37	10	105205170	105205170	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDCD11	NM_014976	exon36	c.5480delC	p.A1827fs	.	.	177	12	177	0	.	275
PDCD11	22984	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105174798	105174798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDCD11	NM_014976	exon12	c.G1408A	p.V470M	.	.	151	48	110	0	.	275
PDCD2	5134	hgsc.bcm.edu	37	6	170886715	170886715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDCD2	NM_002598	exon6	c.A967G	p.S323G	.	.	168	5	103	0	.	227
PDE1A	5136	hgsc.bcm.edu	37	2	183387041	183387041	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDE1A	NM_001258312	exon2	c.A75G	p.G25G	.	.	83	3	78	0	.	93
PDE2A	5138	hgsc.bcm.edu	37	11	72342169	72342169	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDE2A	NM_001243784	exon2	c.34delC	p.L12fs	.	.	150	10	122	0	.	156
PDE4C	5143	hgsc.bcm.edu	37	19	18322644	18322644	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDE4C	NM_000923	exon15	c.A1716G	p.G572G	.	.	136	3	120	0	.	94
PDE6B	5158	hgsc.bcm.edu	37	4	660330	660330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDE6B	NM_001145291	exon20	c.A2279G	p.D760G	.	.	106	5	71	0	.	90
PDLIM2	64236	bcgsc.ca	37	8	22451285	22451285	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDLIM2	NM_021630	exon10	c.1671delC	p.H557fs	.	.	47	5	78	0	.	90
PDLIM2	64236	hgsc.bcm.edu	37	8	22452076	22452076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDLIM2	NM_176871	exon10	c.T1015C	p.S339P	.	.	58	2	85	0	.	90
PDZD7	79955	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102777929	102777929	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDZD7	NM_001195263	exon9	c.C1449T	p.D483D	.	.	138	39	104	0	.	136
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu	37	1	156883056	156883056	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PEAR1	NM_001080471	exon19	c.2493delC	p.N831fs	.	.	213	13	91	0	.	71
PEG3	5178	hgsc.bcm.edu	37	19	57326604	57326604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PEG3	NM_001146184	exon9	c.A3206G	p.D1069G	.	.	115	4	84	0	.	164
PEX2	5828	hgsc.bcm.edu;broad.mit.edu	37	8	77895951	77895951	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PEX2	NM_000318	exon4	c.464delT	p.L155X	.	.	162	10	57	0	.	91
PEX5	5830	bcgsc.ca	37	12	7343144	7343144	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PEX5	NM_001131023	exon2	c.171delC	p.S57fs	.	.	41	5	85	0	.	91
PFKFB4	5210	hgsc.bcm.edu	37	3	48561220	48561220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PFKFB4	NM_004567	exon11	c.A1136G	p.E379G	.	.	198	5	143	0	.	153
PGBD1	84547	bcgsc.ca	37	6	28269410	28269410	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PGBD1	NM_001184743	exon7	c.G1779A	p.K593K	.	.	261	7	190	0	.	94
PGM2L1	283209	bcgsc.ca	37	11	74049570	74049570	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PGM2L1	NM_173582	exon13	c.G1709C	p.S570T	.	.	157	5	101	0	.	91
PGM5P2	595135	broad.mit.edu	37	9	69084909	69084909	+	RNA	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	55	7	29	0	.	.
PHACTR2	9749	hgsc.bcm.edu	37	6	144086851	144086851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHACTR2	NM_001100164	exon6	c.A1148G	p.Q383R	.	.	74	4	60	0	.	92
PHAX	51808	hgsc.bcm.edu	37	5	125960441	125960441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHAX	NM_032177	exon5	c.T1090C	p.S364P	.	.	160	3	103	0	.	90
PHF11	51131	hgsc.bcm.edu;bcgsc.ca	37	13	50098318	50098318	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHF11	NM_001040443	exon8	c.A735G	p.P245P	.	.	88	4	145	0	.	90
PHF20	51230	hgsc.bcm.edu;broad.mit.edu	37	20	34526859	34526859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHF20	NM_016436	exon16	c.2541delT	p.Y847fs	.	.	129	10	102	0	.	515
PHKA1	5255	hgsc.bcm.edu;bcgsc.ca	37	X	71873287	71873287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHKA1	NM_001172436	exon11	c.A1135G	p.R379G	.	.	85	4	88	0	.	134
PHKB	5257	hgsc.bcm.edu	37	16	47622844	47622844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHKB	NM_000293	exon10	c.T899C	p.I300T	.	.	79	3	93	0	.	154
PHKB	5257	hgsc.bcm.edu;broad.mit.edu	37	16	47630407	47630407	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHKB	NM_000293	exon13	c.1328delG	p.W443fs	.	.	160	11	150	0	.	154
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu	37	7	77567067	77567067	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHTF2	NM_001127357	exon11	c.1277delA	p.E426fs	.	.	151	10	82	0	.	23
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu	37	10	99426199	99426199	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PI4K2A	NM_018425	exon7	c.1089delT	p.P363fs	.	.	139	10	120	0	.	226
PICK1	9463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	38470994	38470994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PICK1	NM_012407	exon13	c.C1103T	p.T368I	.	.	118	46	107	0	.	226
PIEZO1	9780	hgsc.bcm.edu;broad.mit.edu	37	16	88793481	88793481	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001142864	exon24	c.3421delG	p.E1141fs	.	.	159	10	137	0	.	.
PIEZO2	63895	hgsc.bcm.edu;broad.mit.edu	37	18	10671532	10671532	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_022068	exon52	c.8251delA	p.T2751fs	.	.	184	12	163	0	.	.
PIGA	5277	hgsc.bcm.edu	37	X	15349573	15349573	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIGA	NM_002641	exon2	c.T480C	p.A160A	.	.	90	5	72	0	.	226
PIK3C2A	5286	hgsc.bcm.edu	37	11	17113160	17113160	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIK3C2A	NM_002645	exon30	c.T4686C	p.A1562A	.	.	174	4	134	0	.	1310
PIM2	11040	hgsc.bcm.edu;broad.mit.edu	37	X	48775859	48775859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIM2	NM_006875	exon2	c.125delG	p.G42fs	.	.	189	13	168	0	.	995
PIN4	5303	hgsc.bcm.edu;broad.mit.edu	37	X	71401650	71401650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIN4	NM_001170747	exon1	c.90delA	p.G30fs	.	.	182	11	152	0	.	130
PKD2L1	9033	hgsc.bcm.edu;broad.mit.edu	37	10	102054379	102054379	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PKD2L1	NM_016112	exon9	c.1572delT	p.F524fs	.	.	158	10	130	0	.	94
PKN2	5586	hgsc.bcm.edu;broad.mit.edu	37	1	89270151	89270151	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PKN2	NM_006256	exon9	c.1359delT	p.D453fs	.	.	226	14	177	0	.	522
PLA2G12B	84647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74702445	74702445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLA2G12B	NM_032562	exon2	c.G265T	p.G89C	.	.	62	27	58	0	.	91
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu	37	1	20465957	20465957	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLA2G2F	NM_022819	exon1	c.37delA	p.K13fs	.	.	149	10	87	0	.	91
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu	37	2	160806244	160806244	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLA2R1	NM_001195641	exon25	c.3584delT	p.F1195fs	.	.	137	10	131	0	.	93
PLAG1	5324	hgsc.bcm.edu;broad.mit.edu	37	8	57078932	57078932	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLAG1	NM_001114634	exon4	c.1373delC	p.P458fs	.	.	232	15	90	0	.	1107
PLBD1	79887	hgsc.bcm.edu	37	12	14693776	14693776	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLBD1	NM_024829	exon4	c.A480G	p.R160R	.	.	118	4	170	0	.	90
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu	37	20	9352974	9352974	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCB4	NM_182797	exon9	c.610delT	p.F204fs	.	.	217	13	240	0	.	274
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu	37	20	39798114	39798114	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCG1	NM_182811	exon23	c.2598delC	p.S866fs	.	.	176	11	178	0	.	911
PLCZ1	89869	hgsc.bcm.edu	37	12	18876315	18876315	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCZ1	NM_033123	exon4	c.A297G	p.E99E	.	.	88	4	119	0	.	228
PLCZ1	89869	hgsc.bcm.edu;bcgsc.ca	37	12	18872429	18872429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCZ1	NM_033123	exon5	c.T505C	p.S169P	.	.	81	4	104	0	.	228
PLEKHA5	54477	bcgsc.ca	37	12	19406872	19406872	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLEKHA5	NM_001256470	exon4	c.228-2A>G	.	.	.	142	5	196	0	.	227
PLEKHD1	400224	bcgsc.ca	37	14	69994990	69994990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLEKHD1	NM_001161498	exon13	c.A1375G	p.T459A	.	.	81	6	68	1	.	68
PLEKHN1	84069	bcgsc.ca	37	1	909243	909243	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLEKHN1	NM_032129	exon14	c.C1465G	p.P489A	.	.	203	7	120	0	.	227
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu	37	1	150131502	150131502	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLEKHO1	NM_016274	exon6	c.1014delC	p.D338fs	.	.	236	16	128	0	.	226
PLK2	10769	broad.mit.edu;bcgsc.ca	37	5	57753012	57753012	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLK2	NM_006622	exon7	c.1004delT	p.L335fs	.	.	97	13	63	0	.	409
PLK4	10733	hgsc.bcm.edu;broad.mit.edu	37	4	128814719	128814719	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLK4	NM_014264	exon12	c.2374delA	p.K792fs	.	.	171	13	128	0	.	333
PLOD2	5352	hgsc.bcm.edu;broad.mit.edu	37	3	145804616	145804616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLOD2	NM_182943	exon10	c.1085delC	p.P362fs	.	.	159	10	114	0	.	92
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu	37	12	94692436	94692436	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLXNC1	NM_005761	exon27	c.4103delT	p.L1368fs	.	.	165	11	120	0	.	92
PLXND1	23129	hgsc.bcm.edu	37	3	129277345	129277345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLXND1	NM_015103	exon33	c.A5371G	p.I1791V	.	.	130	6	70	0	.	90
PMS1	5378	hgsc.bcm.edu;broad.mit.edu	37	2	190719511	190719511	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PMS1	NM_001128144	exon9	c.1513delA	p.K505fs	.	.	163	11	146	0	.	1396
PNCK	139728	hgsc.bcm.edu	37	X	152937342	152937342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNCK	NM_001039582	exon5	c.A656G	p.D219G	.	.	134	5	132	0	.	207
PNISR	25957	hgsc.bcm.edu;broad.mit.edu	37	6	99848584	99848584	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNISR	NM_015491	exon11	c.2250delA	p.K750fs	.	.	243	16	148	0	.	22
PNLIPRP3	119548	hgsc.bcm.edu;bcgsc.ca	37	10	118231366	118231366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNLIPRP3	NM_001011709	exon10	c.A1147G	p.K383E	.	.	118	6	132	0	.	91
PNPT1	87178	hgsc.bcm.edu;broad.mit.edu	37	2	55907883	55907883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNPT1	NM_033109	exon7	c.529delC	p.L177fs	.	.	180	11	139	0	.	90
POLA1	5422	hgsc.bcm.edu;broad.mit.edu	37	X	24745091	24745091	+	Frame_Shift_Del	DEL	T	T	-	rs34146393		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLA1	NM_016937	exon14	c.1416delT	p.T472fs	.	.	154	11	118	0	.	229
POLB	5423	hgsc.bcm.edu;broad.mit.edu	37	8	42213041	42213041	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLB	NM_002690	exon7	c.378delA	p.R126fs	.	.	160	10	269	0	.	1084
POLDIP3	84271	hgsc.bcm.edu;broad.mit.edu	37	22	42981894	42981894	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLDIP3	NM_032311	exon9	c.1169delC	p.P390fs	.	.	124	10	130	0	.	90
POLI	11201	hgsc.bcm.edu	37	18	51807238	51807238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLI	NM_007195	exon5	c.T761C	p.L254P	.	.	76	4	74	0	.	229
POLR2A	5430	hgsc.bcm.edu;bcgsc.ca	37	17	7416095	7416095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLR2A	NM_000937	exon28	c.A4609G	p.S1537G	.	.	48	4	57	0	.	91
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu	37	4	57877166	57877166	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLR2B	NM_000938	exon13	c.1700delT	p.I567fs	.	.	146	11	162	0	.	92
POLR3A	11128	hgsc.bcm.edu;broad.mit.edu	37	10	79745906	79745906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLR3A	NM_007055	exon22	c.2913delA	p.K971fs	.	.	161	10	100	0	.	90
POM121C	100101267	broad.mit.edu;bcgsc.ca	37	7	75053478	75053478	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001099415	exon12	c.902delC	p.P301fs	.	.	769	11	503	0	.	.
POMT1	10585	hgsc.bcm.edu;broad.mit.edu	37	9	134390827	134390827	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POMT1	NM_007171	exon13	c.1256delC	p.A419fs	.	.	157	11	138	0	.	91
POTEC	388468	hgsc.bcm.edu;broad.mit.edu	37	18	14542924	14542924	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POTEC	NM_001137671	exon1	c.222delG	p.G74fs	.	.	462	29	426	0	.	3
POTEF	728378	hgsc.bcm.edu	37	2	130865619	130865619	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POTEF	NM_001099771	exon8	c.1089delA	p.K363fs	.	.	247	17	239	0	.	27
POTEG	404785	bcgsc.ca	37	14	19553523	19553523	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POTEG	NM_001005356	exon1	c.107delG	p.R36fs	.	.	1288	31	1180	1	.	1
POU2AF1	5450	hgsc.bcm.edu	37	11	111225126	111225126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POU2AF1	NM_006235	exon5	c.T631C	p.S211P	.	.	199	6	155	0	.	658
POU3F4	5456	bcgsc.ca	37	X	82764044	82764044	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POU3F4	NM_000307	exon1	c.T712C	p.L238L	.	.	161	6	180	0	.	131
PPA1	5464	hgsc.bcm.edu	37	10	71969413	71969413	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPA1	NM_021129	exon7	c.T540C	p.P180P	.	.	238	17	211	0	.	153
PPA1	5464	hgsc.bcm.edu;broad.mit.edu	37	10	71977640	71977640	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPA1	NM_021129	exon4	c.225delA	p.K75fs	.	.	153	11	138	0	.	153
PPFIBP1	8496	bcgsc.ca	37	12	27820208	27820208	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPFIBP1	NM_177444	exon13	c.1152delG	p.M384fs	.	.	42	5	85	0	.	228
PPIL6	285755	hgsc.bcm.edu;broad.mit.edu	37	6	109757309	109757309	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPIL6	NM_001111298	exon2	c.229delA	p.R77fs	.	.	288	18	201	0	.	90
PPOX	5498	hgsc.bcm.edu;broad.mit.edu	37	1	161140706	161140706	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPOX	NM_000309	exon12	c.1258delC	p.P420fs	.	.	120	10	87	0	.	91
PPP4R1	9989	hgsc.bcm.edu;broad.mit.edu	37	18	9557277	9557277	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPP4R1	NM_001042388	exon15	c.2132delT	p.L711X	.	.	151	11	166	0	.	227
PRAME	23532	hgsc.bcm.edu;broad.mit.edu	37	22	22892453	22892453	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRAME	NM_206954	exon5	c.648delT	p.F216fs	.	.	147	10	170	0	.	515
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22892685	22892685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRAME	NM_206954	exon5	c.A416G	p.N139S	.	.	78	21	112	0	.	515
PRAMEF1	65121	bcgsc.ca	37	1	12854531	12854531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRAMEF1	NM_023013	exon3	c.A755G	p.Q252R	.	.	548	10	342	0	.	22
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu	37	1	14108857	14108857	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRDM2	NM_015866	exon8	c.4567delA	p.K1523fs	.	.	126	10	86	0	.	116
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu	37	19	12911076	12911076	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRDX2	NM_005809	exon4	c.295delA	p.R99fs	.	.	232	15	257	0	.	90
PREX1	57580	hgsc.bcm.edu	37	20	47342873	47342873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PREX1	NM_020820	exon5	c.T575C	p.L192P	.	.	89	4	126	0	.	231
PREX1	57580	hgsc.bcm.edu	37	20	47364348	47364348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	PREX1,NS,carcinoma,+2	PREX1	NM_020820	exon2	c.A289G	p.K97E	.	.	70	3	67	0	.	231
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu	37	3	64085551	64085551	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRICKLE2	NM_198859	exon8	c.1711delT	p.S571fs	.	.	138	10	100	0	.	95
PRKD1	5587	hgsc.bcm.edu;broad.mit.edu	37	14	30095706	30095706	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRKD1	NM_002742	exon12	c.1782delT	p.F594fs	.	.	194	12	193	0	.	1534
PRKDC	5591	ucsc.edu;bcgsc.ca	37	8	48805816	48805816	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRKDC	.	.	.	.	.	.	319	8	156	2	.	1515
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	76066662	76066662	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRKRIR	NM_004705	exon4	c.355delA	p.I119fs	.	.	123	12	84	0	.	93
PRLHR	2834	broad.mit.edu;bcgsc.ca	37	10	120354073	120354073	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRLHR	NM_004248	exon2	c.684delG	p.G228fs	.	.	63	7	74	0	.	90
PRMT5	10419	hgsc.bcm.edu	37	14	23393312	23393312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRMT5	NM_006109	exon12	c.A1280G	p.E427G	.	.	118	4	110	0	.	91
PROSC	11212	broad.mit.edu;bcgsc.ca	37	8	37632975	37632975	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PROSC	NM_007198	exon6	c.573delT	p.S191fs	.	.	79	8	106	0	.	90
PRPF39	55015	hgsc.bcm.edu	37	14	45571779	45571779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRPF39	NM_017922	exon5	c.A617G	p.D206G	.	.	92	4	98	0	.	70
PRR16	51334	hgsc.bcm.edu;broad.mit.edu	37	5	120022115	120022115	+	Frame_Shift_Del	DEL	A	A	-	rs35167981		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRR16	NM_016644	exon3	c.557delA	p.E186fs	.	.	168	11	107	0	.	71
PRSS36	146547	hgsc.bcm.edu;broad.mit.edu	37	16	31150535	31150535	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRSS36	NM_173502	exon15	c.2492delC	p.P831fs	.	.	178	11	161	0	.	91
PRSS57	400668	hgsc.bcm.edu;broad.mit.edu	37	19	687117	687117	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRSS57	NM_214710	exon4	c.453delC	p.P151fs	.	.	177	11	157	0	.	90
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu	37	9	79318977	79318977	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRUNE2	NM_015225	exon9	c.7552delA	p.T2518fs	.	.	170	11	127	0	.	157
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu	37	9	79465566	79465566	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRUNE2	NM_015225	exon3	c.157delG	p.V53fs	.	.	153	10	152	0	.	157
PSAT1	29968	hgsc.bcm.edu;bcgsc.ca	37	9	80923403	80923403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSAT1	NM_021154	exon6	c.A644G	p.D215G	.	.	146	6	192	0	.	91
PSMB2	5690	hgsc.bcm.edu;broad.mit.edu	37	1	36101937	36101937	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSMB2	NM_002794	exon2	c.188delA	p.N63fs	.	.	348	26	172	0	.	90
PSMD12	5718	hgsc.bcm.edu	37	17	65346373	65346373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSMD12	NM_002816	exon4	c.A377G	p.D126G	.	.	131	6	109	0	.	90
PSRC1	84722	hgsc.bcm.edu;broad.mit.edu	37	1	109823047	109823047	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSRC1	NM_001032291	exon7	c.969delC	p.P323fs	.	.	159	13	87	0	.	90
PSRC1	84722	hgsc.bcm.edu;broad.mit.edu	37	1	109824582	109824582	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSRC1	NM_001032291	exon4	c.178delC	p.Q60fs	.	.	167	11	74	0	.	90
PTGES3L-AARSD1	100885850	hgsc.bcm.edu	37	17	41113229	41113229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001136042	exon8	c.A833G	p.D278G	.	.	156	6	114	0	.	.
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu	37	9	114355220	114355220	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTGR1	NM_001146108	exon4	c.195delG	p.G65fs	.	.	155	10	119	0	.	90
PTH	5741	hgsc.bcm.edu;broad.mit.edu	37	11	13514046	13514046	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTH	NM_000315	exon3	c.254delA	p.K85fs	.	.	136	10	86	0	.	91
PTK2	5747	hgsc.bcm.edu	37	8	141749131	141749131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTK2	NM_005607	exon21	c.A1877G	p.D626G	.	.	118	4	26	0	.	1517
PTK2B	2185	broad.mit.edu;bcgsc.ca	37	8	27311779	27311779	+	Frame_Shift_Del	DEL	C	C	-	rs67956828		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTK2B	NM_173174	exon34	c.2704delC	p.P902fs	.	.	70	7	86	0	.	1378
PTPN11	5781	hgsc.bcm.edu	37	12	112888306	112888306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPN11	NM_080601	exon3	c.A322G	p.T108A	.	.	97	4	70	0	.	7239
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu	37	3	47454399	47454399	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPN23	NM_015466	exon25	c.4635delG	p.P1545fs	.	.	331	22	182	0	.	227
PTPN5	84867	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18763990	18763990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPN5	NM_032781	exon7	c.C544T	p.R182C	.	.	121	60	95	0	.	229
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu	37	20	2985763	2985763	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPRA	NM_002836	exon14	c.800delA	p.E267fs	.	.	156	11	166	0	.	227
PTPRK	5796	bcgsc.ca	37	6	128505696	128505696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPRK	NM_001135648	exon7	c.A1043G	p.Y348C	.	.	395	8	312	0	.	231
PTPRK	5796	hgsc.bcm.edu	37	6	128388715	128388715	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPRK	NM_001135648	exon12	c.T2106C	p.A702A	.	.	82	3	45	0	.	231
PTPRQ	374462	broad.mit.edu;bcgsc.ca	37	12	81046585	81046585	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001145026	exon35	c.5571delA	p.A1857fs	.	.	77	8	89	0	.	.
PTPRS	5802	hgsc.bcm.edu;bcgsc.ca	37	19	5231449	5231449	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPRS	NM_002850	exon14	c.2027delC	p.P676fs	.	.	102	10	92	0	.	357
PTTG1	9232	hgsc.bcm.edu;broad.mit.edu	37	5	159851311	159851311	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTTG1	NM_004219	exon4	c.344delA	p.E115fs	.	.	176	11	104	0	.	227
PUM1	9698	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	31441332	31441332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PUM1	NM_014676	exon11	c.G1514A	p.R505H	.	.	182	22	87	0	.	92
PUS7L	83448	hgsc.bcm.edu;broad.mit.edu	37	12	44124292	44124292	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PUS7L	NM_001098614	exon9	c.1993delA	p.T665fs	.	.	246	15	229	0	.	91
PWP2	5822	hgsc.bcm.edu	37	21	45547852	45547852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PWP2	NM_005049	exon18	c.T2180C	p.I727T	.	.	90	4	69	0	.	91
PWWP2A	114825	hgsc.bcm.edu;broad.mit.edu	37	5	159520656	159520656	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PWWP2A	NM_052927	exon2	c.1001delA	p.K334fs	.	.	285	20	154	0	.	68
PXMP4	11264	hgsc.bcm.edu	37	20	32302502	32302502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PXMP4	NM_183397	exon2	c.A154G	p.T52A	.	.	150	4	144	0	.	90
PYGL	5836	hgsc.bcm.edu	37	14	51375542	51375542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PYGL	NM_002863	exon18	c.A2309G	p.D770G	.	.	93	3	109	0	.	91
PYROXD1	79912	hgsc.bcm.edu;broad.mit.edu	37	12	21605042	21605042	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PYROXD1	NM_024854	exon5	c.442delA	p.K148fs	.	.	159	11	232	0	.	23
PYROXD1	79912	hgsc.bcm.edu;broad.mit.edu	37	12	21620538	21620538	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PYROXD1	NM_024854	exon11	c.1240delT	p.F414fs	.	.	213	13	243	0	.	23
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9349247	9349247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PZP	NM_002864	exon9	c.A902G	p.H301R	.	.	69	4	84	0	.	157
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu	37	17	74274145	74274145	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	QRICH2	NM_032134	exon15	c.4544delG	p.G1515fs	.	.	168	10	140	0	.	94
R3HDML	140902	hgsc.bcm.edu;broad.mit.edu	37	20	42979399	42979399	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	R3HDML	NM_178491	exon5	c.729delG	p.K243fs	.	.	248	16	227	0	.	90
RABGAP1	23637	hgsc.bcm.edu	37	9	125835865	125835865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RABGAP1	NM_012197	exon16	c.A2018G	p.K673R	.	.	97	4	126	0	.	500
RABL2B	11158	hgsc.bcm.edu;broad.mit.edu	37	22	51207957	51207957	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RABL2B	NM_001130920	exon8	c.433delA	p.S145fs	.	.	440	28	394	0	.	131
RAD21L1	642636	bcgsc.ca	37	20	1214815	1214815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001136566	exon5	c.T455C	p.I152T	.	.	326	8	274	0	.	.
RAD23B	5887	hgsc.bcm.edu;bcgsc.ca	37	9	110091920	110091920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAD23B	NM_002874	exon10	c.A1213G	p.N405D	.	.	72	4	85	0	.	228
RAD50	10111	hgsc.bcm.edu;broad.mit.edu	37	5	131944362	131944362	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAD50	NM_005732	exon17	c.2774delA	p.E925fs	.	.	190	13	108	0	.	229
RAG1	5896	hgsc.bcm.edu;broad.mit.edu	37	11	36594873	36594873	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAG1	NM_000448	exon2	c.19delC	p.P7fs	.	.	184	11	134	0	.	230
RAI1	10743	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17700882	17700882	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAI1	NM_030665	exon3	c.C4620A	p.L1540L	.	.	256	87	227	0	.	91
RALA	5898	hgsc.bcm.edu;broad.mit.edu	37	7	39745787	39745787	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RALA	NM_005402	exon5	c.564delA	p.G188fs	.	.	335	23	228	0	.	847
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu	37	20	37146233	37146233	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RALGAPB	NM_020336	exon8	c.1136delC	p.T379fs	.	.	203	14	204	0	.	92
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu	37	5	170610183	170610183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RANBP17	NM_022897	exon17	c.1878delA	p.L626fs	.	.	241	18	112	0	.	524
RANBP3L	202151	hgsc.bcm.edu;broad.mit.edu	37	5	36270074	36270074	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RANBP3L	NM_001161429	exon3	c.169delC	p.L57fs	.	.	172	11	117	0	.	91
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu	37	1	21936094	21936094	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAP1GAP	NM_001145658	exon15	c.1237delC	p.L413fs	.	.	162	10	82	0	.	245
RAP1GDS1	5910	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99313179	99313179	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAP1GDS1	NM_001100426	exon6	c.T588C	p.N196N	.	.	77	31	126	0	.	660
RARS2	57038	hgsc.bcm.edu	37	6	88229963	88229963	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RARS2	NM_020320	exon13	c.A1047G	p.G349G	.	.	67	3	30	0	.	92
RASA4CP	401331	broad.mit.edu	37	7	44068881	44068881	+	RNA	SNP	A	A	G	rs2595662	bycluster;by2hit2allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	69	11	23	0	.	.
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu	37	12	113553545	113553545	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RASAL1	NM_004658	exon11	c.898delG	p.D300fs	.	.	194	12	119	0	.	229
RASEF	158158	bcgsc.ca	37	9	85627409	85627409	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RASEF	NM_152573	exon5	c.A783T	p.K261N	.	.	98	4	101	0	.	280
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu	37	15	38810590	38810590	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RASGRP1	NM_001128602	exon5	c.424delA	p.M142fs	.	.	139	10	107	0	.	697
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu	37	18	20573135	20573135	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBBP8	NM_203292	exon11	c.1345delA	p.K449fs	.	.	139	10	150	0	.	659
RBM10	8241	hgsc.bcm.edu	37	X	47041607	47041607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM10	NM_001204468	exon17	c.A2027G	p.E676G	.	.	94	3	99	0	.	626
RBM12B	389677	hgsc.bcm.edu;broad.mit.edu	37	8	94746023	94746023	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM12B	NM_203390	exon3	c.2616delT	p.F872fs	.	.	163	10	54	0	.	90
RBM25	58517	broad.mit.edu	37	14	73563791	73563791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM25	NM_021239	exon7	c.A712G	p.K238E	.	.	99	4	101	1	.	91
RBM33	155435	hgsc.bcm.edu;broad.mit.edu	37	7	155511123	155511123	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM33	NM_053043	exon9	c.1246delC	p.P416fs	.	.	169	10	130	0	.	23
RBM43	375287	hgsc.bcm.edu;broad.mit.edu	37	2	152107917	152107917	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM43	NM_198557	exon4	c.577delC	p.Q193fs	.	.	231	14	227	0	.	90
RBM6	10180	broad.mit.edu;bcgsc.ca	37	3	50098944	50098944	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM6	NM_005777	exon14	c.2403delC	p.D801fs	.	.	154	15	96	0	.	280
RBM6	10180	hgsc.bcm.edu	37	3	50095987	50095987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM6	NM_005777	exon10	c.T2122C	p.S708P	.	.	86	3	51	0	.	280
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu	37	3	29628669	29628669	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBMS3	NM_001003793	exon4	c.372delA	p.A124fs	.	.	143	10	93	0	.	90
RBPMS2	348093	hgsc.bcm.edu;broad.mit.edu	37	15	65040685	65040685	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBPMS2	NM_194272	exon6	c.500delC	p.P167fs	.	.	151	10	124	0	.	90
RC3H2	54542	bcgsc.ca	37	9	125652758	125652758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RC3H2	NM_018835	exon4	c.A416T	p.N139I	.	.	172	7	139	0	.	523
RC3H2	54542	hgsc.bcm.edu;broad.mit.edu	37	9	125652757	125652757	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RC3H2	NM_018835	exon4	c.417delC	p.N139fs	.	.	173	11	138	0	.	523
RETSAT	54884	hgsc.bcm.edu;bcgsc.ca	37	2	85578072	85578072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RETSAT	NM_017750	exon3	c.A428G	p.Q143R	.	.	162	7	191	0	.	70
RFC2	5982	hgsc.bcm.edu	37	7	73651756	73651756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RFC2	NM_181471	exon9	c.A776G	p.H259R	.	.	123	5	63	0	.	229
RFX3	5991	hgsc.bcm.edu	37	9	3275558	3275558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RFX3	NM_134428	exon10	c.A1028G	p.D343G	.	.	68	3	88	0	.	93
RGPD8	727851	broad.mit.edu;bcgsc.ca	37	2	113190972	113190972	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001164463	exon1	c.59delC	p.P20fs	.	.	119	7	101	0	.	.
RGS16	6004	bcgsc.ca	37	1	182569627	182569627	+	Missense_Mutation	SNP	G	G	C	rs140444624	byfrequency;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RGS16	NM_002928	exon5	c.C409G	p.H137D	.	.	200	6	127	0	G|0.999;A|0.001	227
RHOT1	55288	bcgsc.ca	37	17	30551717	30551717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RHOT1	NM_001033568	exon21	c.T2041C	p.F681L	.	.	65	4	46	0	.	93
RIBC2	26150	bcgsc.ca	37	22	45810280	45810280	+	Silent	SNP	T	T	C	rs112418100		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RIBC2	.	.	.	.	.	.	84	7	75	0	T|0.500;C|0.500	90
RIPK3	11035	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	24805506	24805506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RIPK3	NM_006871	exon10	c.G1432A	p.G478S	.	.	101	38	88	0	.	946
RMI1	80010	bcgsc.ca	37	9	86616528	86616528	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RMI1	NM_024945	exon3	c.A627G	p.R209R	.	.	75	4	79	0	.	90
RNASEH2B	79621	bcgsc.ca	37	13	51528041	51528041	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNASEH2B	NM_024570	exon10	c.742delA	p.K248fs	.	.	40	4	79	0	.	90
RNASEL	6041	ucsc.edu;bcgsc.ca	37	1	182550475	182550475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNASEL	NM_021133	exon5	c.G1790A	p.R597Q	.	.	268	44	157	1	.	336
RNF121	55298	hgsc.bcm.edu;bcgsc.ca	37	11	71671841	71671841	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF121	NM_018320	exon3	c.T147C	p.A49A	.	.	119	5	85	0	.	226
RNF150	57484	hgsc.bcm.edu	37	4	141868832	141868832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF150	NM_020724	exon4	c.A866G	p.D289G	.	.	265	9	251	0	.	227
RNF20	56254	hgsc.bcm.edu	37	9	104323165	104323165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF20	NM_019592	exon17	c.A2465G	p.E822G	.	.	136	5	101	0	.	231
RNF43	54894	bcgsc.ca	37	17	56448298	56448298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF43	NM_017763	exon3	c.C349A	p.R117S	.	.	136	7	82	0	.	92
ROBO1	6091	hgsc.bcm.edu	37	3	78719381	78719381	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ROBO1	NM_002941	exon11	c.T1413C	p.T471T	.	.	95	4	48	0	.	67
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu	37	3	78710322	78710322	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ROBO1	NM_002941	exon16	c.2178delT	p.F726fs	.	.	167	10	129	0	.	67
RORA	6095	hgsc.bcm.edu;broad.mit.edu	37	15	60803793	60803793	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RORA	NM_134260	exon6	c.551delA	p.K184fs	.	.	162	10	156	0	.	290
RPE65	6121	hgsc.bcm.edu;broad.mit.edu	37	1	68910348	68910348	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPE65	NM_000329	exon5	c.361delT	p.S121fs	.	.	174	13	81	0	.	91
RPL11	6135	hgsc.bcm.edu;bcgsc.ca	37	1	24022333	24022333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPL11	NM_000975	exon5	c.A442G	p.T148A	.	.	165	7	88	0	.	226
RPL18A	6142	hgsc.bcm.edu;broad.mit.edu	37	19	17973742	17973742	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPL18A	NM_000980	exon4	c.344delC	p.A115fs	.	.	156	10	112	0	.	90
RPP14	11102	hgsc.bcm.edu;broad.mit.edu	37	3	58296091	58296091	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPP14	NM_007042	exon2	c.35delT	p.V12fs	.	.	159	10	117	0	.	90
RPRD2	23248	hgsc.bcm.edu	37	1	150429791	150429791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPRD2	NM_015203	exon8	c.A898G	p.N300D	.	.	84	4	68	0	.	23
RPS3A	6189	hgsc.bcm.edu;broad.mit.edu	37	4	152025347	152025347	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPS3A	NM_001006	exon5	c.582delA	p.G194fs	.	.	160	10	155	0	.	91
RPS4Y2	140032	hgsc.bcm.edu;broad.mit.edu	37	Y	22921883	22921883	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001039567	exon3	c.211delA	p.K71fs	.	.	168	10	144	0	.	.
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu	37	X	83374999	83374999	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPS6KA6	NM_014496	exon9	c.683delA	p.K228fs	.	.	166	10	166	0	.	615
RRN3P2	653390	broad.mit.edu	37	16	29115246	29115246	+	RNA	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	19	3	18	0	.	.
RSPRY1	89970	hgsc.bcm.edu	37	16	57254758	57254758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RSPRY1	NM_133368	exon9	c.A1016G	p.E339G	.	.	127	4	128	0	.	91
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu	37	5	179023590	179023590	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RUFY1	NM_025158	exon13	c.1539delG	p.Q513fs	.	.	183	11	101	0	.	157
RWDD1	51389	hgsc.bcm.edu	37	6	116901503	116901503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RWDD1	NM_015952	exon2	c.A119G	p.E40G	.	.	68	2	41	0	.	92
RYR2	6262	hgsc.bcm.edu;broad.mit.edu	37	1	237604620	237604620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RYR2	NM_001035	exon13	c.1007delA	p.E336fs	.	.	153	10	100	0	.	158
RYR2	6262	hgsc.bcm.edu;broad.mit.edu	37	1	237957192	237957192	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RYR2	NM_001035	exon95	c.13808delA	p.E4603fs	.	.	202	12	115	0	.	158
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51173561	51173561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SALL1	NM_002968	exon2	c.C2572T	p.L858F	.	.	183	8	155	0	.	98
SALL2	6297	hgsc.bcm.edu;broad.mit.edu	37	14	21991715	21991715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SALL2	NM_005407	exon2	c.2147delG	p.G716fs	.	.	115	11	86	0	.	92
SALL4	57167	hgsc.bcm.edu;broad.mit.edu	37	20	50408744	50408744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SALL4	NM_020436	exon2	c.278delA	p.N93fs	.	.	105	10	74	0	.	92
SAMM50	25813	hgsc.bcm.edu;broad.mit.edu	37	22	44379821	44379821	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SAMM50	NM_015380	exon12	c.1016delT	p.L339fs	.	.	161	10	136	0	.	91
SAP130	79595	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	128712861	128712861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SAP130	NM_001145928	exon16	c.G2199T	p.M733I	.	.	195	61	188	0	.	94
SASS6	163786	hgsc.bcm.edu;broad.mit.edu	37	1	100588802	100588802	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SASS6	NM_194292	exon3	c.170delT	p.L57fs	.	.	255	18	121	0	.	70
SATB1	6304	hgsc.bcm.edu;bcgsc.ca	37	3	18427925	18427925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SATB1	NM_002971	exon8	c.C1385A	p.P462H	.	.	191	9	131	0	.	228
SBF1	6305	hgsc.bcm.edu	37	22	50905072	50905072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SBF1	NM_002972	exon6	c.T617C	p.V206A	.	.	124	6	128	0	.	90
SCAMP3	10067	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	155227359	155227359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCAMP3	NM_005698	exon6	c.A607G	p.I203V	.	.	284	175	125	0	.	93
SCML1	6322	hgsc.bcm.edu	37	X	17767571	17767571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCML1	NM_001037540	exon5	c.A250G	p.R84G	.	.	131	2	120	0	.	290
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu	37	2	166852565	166852565	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCN1A	NM_001165963	exon24	c.4539delA	p.K1513fs	.	.	150	10	144	0	.	147
SCN4A	6329	hgsc.bcm.edu;bcgsc.ca	37	17	62048557	62048557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCN4A	NM_000334	exon5	c.T668C	p.V223A	.	.	71	5	42	0	.	93
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu	37	17	62021202	62021202	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCN4A	NM_000334	exon22	c.3921delG	p.G1307fs	.	.	254	17	182	0	.	93
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu	37	2	167141203	167141203	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCN9A	NM_002977	exon12	c.1734delT	p.F578fs	.	.	153	11	148	0	.	181
SCUBE3	222663	hgsc.bcm.edu	37	6	35216340	35216340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCUBE3	NM_152753	exon22	c.A2840G	p.K947R	.	.	87	3	56	0	.	91
SCYL1	57410	hgsc.bcm.edu	37	11	65294460	65294460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCYL1	NM_020680	exon6	c.T721C	p.C241R	.	.	143	6	120	0	.	333
SDCBP2	27111	hgsc.bcm.edu;broad.mit.edu	37	20	1291473	1291473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SDCBP2	NM_080489	exon8	c.795delC	p.P265fs	.	.	194	12	196	0	.	154
SDCCAG3	10807	hgsc.bcm.edu	37	9	139301956	139301956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SDCCAG3	NM_001039707	exon5	c.G460A	p.G154R	.	.	72	4	50	0	.	90
SDHAP2	727956	broad.mit.edu	37	3	195398339	195398339	+	RNA	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	23	3	13	0	.	.
SDPR	8436	hgsc.bcm.edu;broad.mit.edu	37	2	192701068	192701068	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SDPR	NM_004657	exon2	c.859delA	p.S287fs	.	.	210	13	173	0	.	92
SEC14L1	6397	hgsc.bcm.edu;broad.mit.edu	37	17	75189591	75189591	+	Frame_Shift_Del	DEL	A	A	-	rs34381783		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC14L1	NM_001204408	exon8	c.434delA	p.E145fs	.	.	178	12	111	0	.	92
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu	37	5	134059335	134059335	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC24A	NM_021982	exon22	c.3142delT	p.F1048fs	.	.	177	11	102	0	.	68
SEC24C	9632	hgsc.bcm.edu;broad.mit.edu	37	10	75525560	75525560	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC24C	NM_004922	exon11	c.1369delC	p.P457fs	.	.	173	12	185	0	.	92
SEC31B	25956	hgsc.bcm.edu;bcgsc.ca	37	10	102275905	102275905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC31B	NM_015490	exon3	c.A151G	p.R51G	.	.	91	4	116	0	.	91
SEC62	7095	hgsc.bcm.edu;broad.mit.edu	37	3	169700648	169700648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC62	NM_003262	exon4	c.405delA	p.T135fs	.	.	128	10	68	0	.	69
SEC63	11231	bcgsc.ca	37	6	108233930	108233930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC63	NM_007214	exon6	c.A563T	p.N188I	.	.	369	12	236	0	.	227
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu	37	15	49293086	49293086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SECISBP2L	NM_001193489	exon15	c.2236delA	p.I746fs	.	.	215	14	193	0	.	136
SEL1L2	80343	hgsc.bcm.edu;broad.mit.edu	37	20	13899678	13899678	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEL1L2	NM_001271539	exon4	c.375delA	p.K125fs	.	.	144	11	139	0	.	70
SEL1L	6400	hgsc.bcm.edu	37	14	81970628	81970628	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEL1L	NM_001244984	exon5	c.A531G	p.R177R	.	.	142	2	146	0	.	227
SELENBP1	8991	hgsc.bcm.edu;broad.mit.edu	37	1	151339214	151339214	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SELENBP1	NM_001258289	exon6	c.774delC	p.P258fs	.	.	163	10	88	0	.	90
SEMA3D	223117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84644405	84644405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEMA3D	NM_152754	exon14	c.C1673T	p.A558V	.	.	159	35	148	0	.	138
SEMG2	6407	hgsc.bcm.edu;broad.mit.edu	37	20	43851552	43851552	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEMG2	NM_003008	exon2	c.1279delA	p.K427fs	.	.	162	10	107	0	.	91
SENP1	29843	hgsc.bcm.edu	37	12	48477423	48477423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SENP1	NM_001267594	exon6	c.T503C	p.L168P	.	.	100	4	124	0	.	660
SENP6	26054	hgsc.bcm.edu;broad.mit.edu	37	6	76331286	76331286	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SENP6	NM_001100409	exon2	c.91delA	p.K31fs	.	.	258	16	159	0	.	660
SERPING1	710	hgsc.bcm.edu	37	11	57367406	57367406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SERPING1	NM_001032295	exon2	c.A106G	p.S36G	.	.	155	3	96	0	.	650
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30976976	30976976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SETD1A	NM_014712	exon8	c.G1774A	p.G592S	.	.	83	34	55	0	.	93
SETX	23064	bcgsc.ca	37	9	135205008	135205008	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SETX	NM_015046	exon10	c.A1977G	p.K659K	.	.	140	5	140	0	.	93
SETX	23064	hgsc.bcm.edu;broad.mit.edu	37	9	135203232	135203232	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SETX	NM_015046	exon10	c.3753delA	p.K1251fs	.	.	169	11	147	0	.	93
SF3B1	23451	hgsc.bcm.edu	37	2	198281517	198281517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SF3B1	NM_012433	exon6	c.A614G	p.D205G	.	.	158	2	146	0	.	140
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu	37	2	198285793	198285793	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SF3B1	NM_012433	exon3	c.260delC	p.P87fs	.	.	154	10	151	0	.	140
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu	37	10	7214583	7214583	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SFMBT2	NM_001029880	exon18	c.2025delC	p.P675fs	.	.	219	17	205	0	.	141
SGCE	8910	hgsc.bcm.edu;broad.mit.edu	37	7	94232644	94232644	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SGCE	NM_001099401	exon6	c.783delA	p.K261fs	.	.	166	12	142	0	.	91
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu	37	17	2282488	2282488	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SGSM2	NM_014853	exon23	c.3058delT	p.F1020fs	.	.	209	12	247	0	.	68
SH2D3A	10045	hgsc.bcm.edu;broad.mit.edu	37	19	6755180	6755180	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SH2D3A	NM_005490	exon5	c.643delC	p.R215fs	.	.	169	11	127	0	.	290
SHBG	6462	hgsc.bcm.edu	37	17	7536255	7536255	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SHBG	NM_001040	exon7	c.T1038C	p.R346R	.	.	43	2	63	0	.	90
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu	37	6	146254194	146254194	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SHPRH	NM_173082	exon14	c.3138delA	p.K1046fs	.	.	125	10	85	0	.	92
SI	6476	hgsc.bcm.edu;bcgsc.ca	37	3	164758754	164758754	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SI	NM_001041	exon18	c.A2133G	p.E711E	.	.	87	4	89	0	.	104
SIGLEC12	89858	hgsc.bcm.edu	37	19	52002448	52002448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIGLEC12	NM_053003	exon4	c.A1111G	p.T371A	.	.	142	3	137	0	.	96
SIGLEC7	27036	hgsc.bcm.edu;broad.mit.edu	37	19	51650558	51650558	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIGLEC7	NM_014385	exon6	c.1205delG	p.R402fs	.	.	124	10	121	0	.	153
SIGMAR1	10280	hgsc.bcm.edu	37	9	34635688	34635688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIGMAR1	NM_005866	exon4	c.T613C	p.S205P	.	.	161	6	134	0	.	90
SIK3	23387	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	116744713	116744713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIK3	NM_025164	exon12	c.A1313G	p.Q438R	.	.	128	30	90	0	.	919
SIMC1	375484	hgsc.bcm.edu;broad.mit.edu	37	5	175740835	175740835	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_198567	exon4	c.574delC	p.P192fs	.	.	174	11	113	0	.	.
SIPA1L1	26037	hgsc.bcm.edu	37	14	72152235	72152235	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIPA1L1	NM_015556	exon10	c.T3261C	p.S1087S	.	.	97	2	88	0	.	156
SIRPG	55423	bcgsc.ca	37	20	1616207	1616207	+	Missense_Mutation	SNP	C	C	G	rs200055053	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIRPG	NM_018556	exon4	c.G787C	p.V263L	.	.	256	7	269	0	.	23
SLAIN2	57606	hgsc.bcm.edu;bcgsc.ca	37	4	48384604	48384604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_020846	exon5	c.A882G	p.A294A	.	.	45	4	29	0	.	.
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu	37	15	48539132	48539132	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC12A1	NM_001184832	exon12	c.1479delC	p.G493fs	.	.	135	10	100	0	.	24
SLC12A9	56996	bcgsc.ca	37	7	100464221	100464221	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC12A9	NM_020246	exon14	c.T2739C	p.D913D	.	.	64	4	50	0	.	90
SLC15A2	6565	hgsc.bcm.edu	37	3	121613348	121613348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC15A2	NM_001145998	exon1	c.T25C	p.S9P	.	.	94	3	67	0	.	91
SLC1A4	6509	hgsc.bcm.edu;broad.mit.edu	37	2	65237733	65237733	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC1A4	NM_003038	exon4	c.636delC	p.I212fs	.	.	165	10	163	0	.	91
SLC20A2	6575	bcgsc.ca	37	8	42294536	42294536	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC20A2	NM_001257181	exon8	c.1494delG	p.G498fs	.	.	39	4	72	0	.	92
SLC22A2	6582	hgsc.bcm.edu;bcgsc.ca	37	6	160671613	160671613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC22A2	NM_003058	exon3	c.A640G	p.S214G	.	.	88	4	125	0	.	154
SLC26A4	5172	hgsc.bcm.edu;broad.mit.edu	37	7	107340574	107340574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC26A4	NM_000441	exon15	c.1661delT	p.I554fs	.	.	198	12	138	0	.	96
SLC2A9	56606	hgsc.bcm.edu;broad.mit.edu	37	4	10020605	10020605	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC2A9	NM_020041	exon2	c.243delC	p.P81fs	.	.	123	10	64	0	.	93
SLC30A3	7781	hgsc.bcm.edu	37	2	27480186	27480186	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC30A3	NM_003459	exon5	c.613delC	p.H205fs	.	.	164	11	137	0	.	90
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu	37	1	234041422	234041422	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC35F3	NM_173508	exon2	c.201delG	p.P67fs	.	.	160	11	91	0	.	92
SLC35G6	643664	bcgsc.ca	37	17	7386176	7386176	+	Silent	SNP	G	G	C	rs76776066	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001102614	exon2	c.G873C	p.V291V	.	.	270	19	360	12	.	.
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu	37	21	43945906	43945906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC37A1	NM_018964	exon4	c.77delT	p.I26fs	.	.	163	11	170	0	.	90
SLC38A6	145389	hgsc.bcm.edu	37	14	61497161	61497161	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC38A6	NM_153811	exon6	c.404-2A>G	.	.	.	98	2	112	0	.	92
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu	37	4	103226251	103226251	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC39A8	NM_022154	exon4	c.570delC	p.P190fs	.	.	129	10	277	0	.	90
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu	37	11	57193097	57193097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC43A3	NM_017611	exon4	c.231delG	p.G77fs	.	.	156	13	136	0	.	90
SLC47A1	55244	hgsc.bcm.edu	37	17	19451395	19451395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC47A1	NM_018242	exon4	c.T404C	p.L135P	.	.	97	4	77	0	.	90
SLC47A2	146802	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19583316	19583316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC47A2	NM_152908	exon16	c.G1537T	p.A513S	.	.	87	28	64	0	.	90
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	72432766	72432766	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC4A4	NM_001134742	exon24	c.3145delA	p.K1049fs	.	.	100	10	126	0	.	95
SLC6A14	11254	hgsc.bcm.edu;broad.mit.edu	37	X	115573885	115573885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC6A14	NM_007231	exon4	c.377delT	p.I126fs	.	.	121	10	104	0	.	133
SLC6A15	55117	hgsc.bcm.edu	37	12	85264404	85264404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC6A15	NM_182767	exon9	c.A1348G	p.M450V	.	.	81	2	97	0	.	93
SLC6A16	28968	hgsc.bcm.edu	37	19	49813309	49813309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC6A16	NM_014037	exon4	c.T688C	p.S230P	.	.	148	3	160	0	.	94
SLC7A3	84889	hgsc.bcm.edu	37	X	70146023	70146023	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC7A3	NM_032803	exon11	c.T1626C	p.P542P	.	.	87	2	69	0	.	132
SLC7A6OS	84138	bcgsc.ca	37	16	68344697	68344697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC7A6OS	NM_032178	exon1	c.G133A	p.G45S	.	.	211	6	181	0	.	91
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu	37	X	135080706	135080706	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC9A6	NM_001042537	exon4	c.669delT	p.C223fs	.	.	154	11	138	0	.	131
SLC9C1	285335	bcgsc.ca	37	3	111918217	111918217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_183061	exon20	c.T2474C	p.F825S	.	.	100	5	82	0	.	.
SLC9C1	285335	hgsc.bcm.edu;bcgsc.ca	37	3	111888153	111888153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_183061	exon24	c.A2942G	p.H981R	.	.	84	4	74	0	.	.
SLCO1B1	10599	hgsc.bcm.edu;broad.mit.edu	37	12	21375253	21375253	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLCO1B1	NM_006446	exon13	c.1702delA	p.K568fs	.	.	141	10	166	0	.	97
SLFN12L	100506736	hgsc.bcm.edu;broad.mit.edu	37	17	33806378	33806378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLFN12L	NM_001195790	exon2	c.851delA	p.N284fs	.	.	159	10	140	0	.	23
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu	37	17	33772591	33772591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLFN13	NM_144682	exon3	c.109delA	p.T37fs	.	.	174	11	190	0	.	91
SLIT3	6586	hgsc.bcm.edu	37	5	168212944	168212944	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLIT3	NM_001271946	exon12	c.A1119G	p.G373G	.	.	132	4	66	0	.	95
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu	37	5	168127640	168127640	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLIT3	NM_001271946	exon27	c.2910delC	p.P970fs	.	.	273	18	142	0	.	95
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu	37	13	88328344	88328344	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLITRK5	NM_015567	exon2	c.701delA	p.E234fs	.	.	191	12	98	0	.	94
SMAD3	4088	hgsc.bcm.edu;broad.mit.edu	37	15	67482771	67482771	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMAD3	NM_005902	exon9	c.1175delC	p.T392fs	.	.	148	10	134	0	.	904
SMARCA1	6594	hgsc.bcm.edu	37	X	128640085	128640085	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMARCA1	NM_139035	exon8	c.1070delT	p.L357fs	.	.	144	11	128	0	.	230
SMARCA4	6597	hgsc.bcm.edu	37	19	11150224	11150224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMARCA4	NM_001128849	exon30	c.T4261C	p.S1421P	.	.	113	4	121	0	.	1523
SMARCA5	8467	bcgsc.ca	37	4	144461617	144461617	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMARCA5	NM_003601	exon14	c.A1872G	p.K624K	.	.	218	7	170	0	.	227
SMARCD2	6603	hgsc.bcm.edu;broad.mit.edu	37	17	61914354	61914354	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMARCD2	NM_001098426	exon4	c.495delT	p.F165fs	.	.	135	10	77	0	.	227
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu	37	X	53407993	53407993	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMC1A	NM_006306	exon23	c.3453delC	p.P1151fs	.	.	127	10	126	0	.	232
SMC1B	27127	hgsc.bcm.edu;broad.mit.edu	37	22	45798221	45798221	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMC1B	NM_148674	exon5	c.846delA	p.K282fs	.	.	193	12	150	0	.	229
SMC4	10051	hgsc.bcm.edu;broad.mit.edu	37	3	160131299	160131299	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMC4	NM_005496	exon7	c.1019delA	p.Q340fs	.	.	183	13	110	0	.	291
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu	37	18	2722560	2722560	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMCHD1	NM_015295	exon20	c.2502delT	p.P834fs	.	.	163	10	149	0	.	46
SMCHD1	23347	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2750117	2750117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMCHD1	NM_015295	exon31	c.C4004A	p.P1335H	.	.	94	23	106	0	.	46
SMCR8	140775	hgsc.bcm.edu;broad.mit.edu	37	17	18221365	18221365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMCR8	NM_144775	exon1	c.2262delC	p.V754fs	.	.	147	12	115	0	.	91
SMG1	23049	hgsc.bcm.edu;broad.mit.edu	37	16	18841357	18841357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMG1	NM_015092	exon53	c.9024delT	p.F3008fs	.	.	157	11	123	0	.	1160
SNAPC1	6617	hgsc.bcm.edu;broad.mit.edu	37	14	62245598	62245598	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNAPC1	NM_003082	exon7	c.795delA	p.I265fs	.	.	189	12	152	0	.	90
SNED1	25992	hgsc.bcm.edu;bcgsc.ca	37	2	241988110	241988110	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNED1	NM_001080437	exon10	c.A1431G	p.G477G	.	.	121	4	111	0	.	72
SNRNP200	23020	hgsc.bcm.edu;broad.mit.edu	37	2	96958714	96958714	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNRNP200	NM_014014	exon16	c.2156delA	p.N719fs	.	.	175	13	161	0	.	162
SNRNP48	154007	hgsc.bcm.edu;broad.mit.edu	37	6	7594353	7594353	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNRNP48	NM_152551	exon3	c.292delT	p.F98fs	.	.	178	11	98	0	.	90
SNRPN	6638	hgsc.bcm.edu;broad.mit.edu	37	15	25221497	25221497	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNRPN	NM_022807	exon9	c.201delG	p.L67fs	.	.	128	10	87	0	.	469
SNX18	112574	hgsc.bcm.edu;bcgsc.ca	37	5	53813856	53813856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNX18	NM_052870	exon1	c.A74G	p.E25G	.	.	48	4	33	0	.	226
SNX2	6643	hgsc.bcm.edu;broad.mit.edu	37	5	122137589	122137589	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNX2	NM_003100	exon4	c.416delT	p.I139fs	.	.	318	19	154	0	.	226
SOBP	55084	hgsc.bcm.edu;broad.mit.edu	37	6	107956410	107956410	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOBP	NM_018013	exon6	c.2362delA	p.K788fs	.	.	139	10	109	0	.	91
SOGA3	387104	hgsc.bcm.edu;broad.mit.edu	37	6	127834044	127834044	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001012279	exon4	c.1477delA	p.M493X	.	.	246	16	172	0	.	.
SORBS2	8470	hgsc.bcm.edu	37	4	186598318	186598318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SORBS2	NM_001145673	exon5	c.A325G	p.T109A	.	.	140	4	133	0	.	91
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu	37	4	186583322	186583322	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SORBS2	NM_001145673	exon6	c.567delC	p.P189fs	.	.	225	15	209	0	.	91
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu	37	4	7716932	7716932	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SORCS2	NM_020777	exon17	c.2146delT	p.S716fs	.	.	150	11	153	0	.	91
SORL1	6653	bcgsc.ca	37	11	121485630	121485630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SORL1	NM_003105	exon41	c.A5470G	p.T1824A	.	.	113	5	87	0	.	228
SOS1	6654	hgsc.bcm.edu;broad.mit.edu	37	2	39262357	39262357	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOS1	NM_005633	exon8	c.1070delT	p.L357X	.	.	174	11	163	0	.	851
SOS1	6654	hgsc.bcm.edu;broad.mit.edu	37	2	39262585	39262585	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOS1	NM_005633	exon7	c.921delT	p.F307fs	.	.	169	11	180	0	.	851
SOS2	6655	hgsc.bcm.edu;bcgsc.ca	37	14	50647366	50647366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOS2	NM_006939	exon7	c.A893G	p.Q298R	.	.	56	4	48	0	.	849
SOX10	6663	hgsc.bcm.edu	37	22	38379616	38379616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOX10	NM_006941	exon2	c.A176G	p.Q59R	.	.	83	4	57	0	.	650
SOX2	6657	hgsc.bcm.edu	37	3	181431499	181431499	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOX2	.	.	.	.	.	.	146	10	118	0	.	650
SOX30	11063	bcgsc.ca	37	5	157075720	157075720	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOX30	NM_178424	exon2	c.A1152G	p.K384K	.	.	241	8	140	0	.	91
SOX6	55553	hgsc.bcm.edu;broad.mit.edu	37	11	16208476	16208476	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOX6	NM_001145819	exon5	c.600delA	p.K200fs	.	.	176	11	114	0	.	93
SPAG16	79582	bcgsc.ca	37	2	214162036	214162036	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPAG16	NM_024532	exon3	c.A234G	p.K78K	.	.	141	5	111	0	.	188
SPATA2L	124044	hgsc.bcm.edu;broad.mit.edu	37	16	89764134	89764134	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPATA2L	NM_152339	exon3	c.883delG	p.A295fs	.	.	138	10	92	0	.	90
SPATA31A4	642629	hgsc.bcm.edu	37	9	41321778	41321778	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001242613	exon4	c.3568delT	p.S1190fs	.	.	227	14	273	0	.	.
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu	37	9	84606643	84606643	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001001670	exon4	c.1258delA	p.K420fs	.	.	144	10	125	0	.	.
SPEG	10290	hgsc.bcm.edu;broad.mit.edu	37	2	220354172	220354172	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPEG	NM_005876	exon36	c.8432delC	p.A2811fs	.	.	206	13	154	0	.	383
SPG11	80208	hgsc.bcm.edu	37	15	44905698	44905698	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPG11	NM_025137	exon17	c.3075delA	p.K1025fs	.	.	157	10	159	0	.	95
SPON1	10418	bcgsc.ca	37	11	14101495	14101495	+	RNA	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPON1	.	.	.	.	.	.	201	19	163	5	.	1
SPON2	10417	hgsc.bcm.edu;broad.mit.edu	37	4	1165676	1165676	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPON2	NM_012445	exon2	c.184delC	p.L62fs	.	.	159	10	95	0	.	90
SPRR2G	6706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	153122487	153122487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRR2G	NM_001014291	exon2	c.G100A	p.E34K	.	.	141	74	66	0	.	68
SPRY1	10252	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	124322782	124322782	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRY1	NM_001258039	exon2	c.G36A	p.S12S	.	.	189	59	143	0	.	660
SPTA1	6708	hgsc.bcm.edu	37	1	158641962	158641962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPTA1	NM_003126	exon11	c.A1375G	p.T459A	.	.	97	4	69	0	.	142
SQSTM1	8878	bcgsc.ca	37	5	179260154	179260154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SQSTM1	NM_003900	exon6	c.C877T	p.P293S	.	.	145	6	67	0	.	92
SRA1	10011	hgsc.bcm.edu;broad.mit.edu	37	5	139936736	139936736	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRA1	NM_001253764	exon1	c.302delC	p.P101fs	.	.	191	15	103	0	.	44
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu	37	16	30735727	30735727	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRCAP	NM_006662	exon25	c.4982delA	p.Q1661fs	.	.	164	10	117	0	.	94
SRGAP1	57522	hgsc.bcm.edu	37	12	64472776	64472776	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRGAP1	NM_020762	exon9	c.C1203T	p.C401C	.	.	83	3	78	0	.	653
SRRM2	23524	hgsc.bcm.edu;bcgsc.ca	37	16	2812846	2812846	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRRM2	NM_016333	exon11	c.T2317C	p.L773L	.	.	63	4	67	0	.	93
SRSF11	9295	hgsc.bcm.edu	37	1	70687464	70687464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRSF11	NM_001190987	exon2	c.A145G	p.M49V	.	.	80	4	52	0	.	227
SRSF4	6429	hgsc.bcm.edu;broad.mit.edu	37	1	29475675	29475675	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRSF4	NM_005626	exon6	c.732delA	p.K244fs	.	.	167	10	108	0	.	226
SSBP3	23648	hgsc.bcm.edu;broad.mit.edu	37	1	54870294	54870294	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SSBP3	NM_145716	exon3	c.146delA	p.N49fs	.	.	247	16	133	0	.	90
SSC5D	284297	hgsc.bcm.edu	37	19	56028719	56028719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001144950	exon14	c.T3076C	p.S1026P	.	.	99	4	94	0	.	.
SSH2	85464	hgsc.bcm.edu	37	17	27959313	27959313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SSH2	NM_033389	exon15	c.T2818C	p.S940P	.	.	98	4	63	0	.	92
SSPO	23145	bcgsc.ca	37	7	149476666	149476666	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_198455	exon9	c.1116+2G>C	.	.	.	256	1	192	1	.	.
SSX4B	548313	hgsc.bcm.edu	37	X	48244046	48244046	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SSX4B	NM_001034832	exon3	c.113delA	p.E38fs	.	.	319	20	308	0	.	22
ST5	6764	hgsc.bcm.edu;broad.mit.edu	37	11	8736195	8736195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ST5	NM_005418	exon10	c.1904delA	p.K635fs	.	.	187	15	136	0	.	227
ST8SIA3	51046	hgsc.bcm.edu	37	18	55024466	55024466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ST8SIA3	NM_015879	exon3	c.A625G	p.T209A	.	.	92	4	69	0	.	136
ST8SIA3	51046	hgsc.bcm.edu	37	18	55027237	55027237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ST8SIA3	NM_015879	exon4	c.A872G	p.N291S	.	.	94	4	101	0	.	136
STAP2	55620	bcgsc.ca	37	19	4325434	4325434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STAP2	NM_001013841	exon10	c.C938T	p.P313L	.	.	115	6	109	0	.	90
STARD13	90627	hgsc.bcm.edu;bcgsc.ca	37	13	33684128	33684128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STARD13	NM_178006	exon12	c.T2929C	p.W977R	.	.	114	5	145	0	.	94
STAT1	6772	hgsc.bcm.edu	37	2	191835434	191835434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STAT1	NM_007315	exon25	c.G2248A	p.V750I	.	.	66	3	63	0	.	1335
STK25	10494	hgsc.bcm.edu;broad.mit.edu	37	2	242440926	242440926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STK25	NM_006374	exon3	c.228delC	p.P76fs	.	.	120	10	98	0	.	978
STRA6	64220	hgsc.bcm.edu	37	15	74473791	74473791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STRA6	NM_001199042	exon17	c.T1646C	p.L549P	.	.	100	4	67	0	.	90
STT3B	201595	hgsc.bcm.edu;broad.mit.edu	37	3	31656646	31656646	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STT3B	NM_178862	exon6	c.927delT	p.P309fs	.	.	157	12	131	0	.	90
STT3B	201595	hgsc.bcm.edu;broad.mit.edu	37	3	31665200	31665200	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STT3B	NM_178862	exon11	c.1574delA	p.E525fs	.	.	157	10	133	0	.	90
STT3B	201595	hgsc.bcm.edu;broad.mit.edu	37	3	31674442	31674442	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STT3B	NM_178862	exon15	c.2203delC	p.P735fs	.	.	175	11	134	0	.	90
STYX	6815	hgsc.bcm.edu;broad.mit.edu	37	14	53213189	53213189	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STYX	NM_001130701	exon4	c.136delA	p.K46fs	.	.	206	14	182	0	.	226
SUCO	51430	hgsc.bcm.edu;broad.mit.edu	37	1	172558537	172558537	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014283	exon18	c.2296delC	p.P766fs	.	.	140	10	76	0	.	.
SUCO	51430	hgsc.bcm.edu;broad.mit.edu	37	1	172571330	172571330	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014283	exon21	c.3145delA	p.K1049fs	.	.	161	12	84	0	.	.
SUPT20HL2	170067	hgsc.bcm.edu	37	X	24329517	24329517	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001136233	exon1	c.1916delT	p.F639fs	.	.	211	13	146	0	.	.
SUV420H2	84787	hgsc.bcm.edu	37	19	55858478	55858478	+	Silent	SNP	C	C	T	rs79215683	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SUV420H2	NM_032701	exon9	c.C1050T	p.H350H	.	.	10	8	4	0	C|0.978;T|0.022	226
SVIL	6840	hgsc.bcm.edu	37	10	29839664	29839664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SVIL	NM_003174	exon8	c.T689C	p.F230S	.	.	81	5	70	0	.	96
SWT1	54823	hgsc.bcm.edu;broad.mit.edu	37	1	185175808	185175808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SWT1	NM_017673	exon13	c.1885delA	p.K629fs	.	.	180	11	111	0	.	91
SYCP2	10388	hgsc.bcm.edu;bcgsc.ca	37	20	58489043	58489043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYCP2	NM_014258	exon11	c.G817A	p.G273R	.	.	149	6	126	0	.	525
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu	37	20	58457202	58457202	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYCP2	NM_014258	exon26	c.2548delA	p.S850fs	.	.	251	15	199	0	.	525
SYCP2L	221711	hgsc.bcm.edu	37	6	10907825	10907825	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYCP2L	NM_001040274	exon10	c.727delA	p.K243fs	.	.	164	10	83	0	.	24
SYNE1	23345	hgsc.bcm.edu	37	6	152589207	152589207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYNE1	NM_182961	exon100	c.A18799G	p.T6267A	.	.	112	5	92	0	.	607
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu	37	14	64556329	64556329	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYNE2	NM_182914	exon59	c.11708delA	p.E3903fs	.	.	213	13	188	0	.	164
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu	37	14	64593150	64593150	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYNE2	NM_182914	exon72	c.13660delC	p.P4554fs	.	.	202	13	165	0	.	164
SYNJ1	8867	hgsc.bcm.edu	37	21	34053824	34053824	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYNJ1	NM_203446	exon11	c.T1452C	p.A484A	.	.	112	4	104	0	.	232
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu	37	11	85420388	85420388	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYTL2	NM_206927	exon7	c.3000delA	p.K1000fs	.	.	163	11	133	0	.	137
SYTL3	94120	hgsc.bcm.edu;broad.mit.edu	37	6	159103969	159103969	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYTL3	NM_001242384	exon7	c.342delA	p.I114fs	.	.	176	14	154	0	.	90
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu	37	11	64897763	64897763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYVN1	NM_172230	exon12	c.1194delC	p.P398fs	.	.	155	10	107	0	.	91
TAC4	255061	hgsc.bcm.edu;broad.mit.edu	37	17	47918915	47918915	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAC4	NM_170685	exon3	c.249delA	p.K83fs	.	.	244	15	182	0	.	135
TACC2	10579	hgsc.bcm.edu	37	10	124008566	124008566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TACC2	NM_206862	exon21	c.A8555G	p.N2852S	.	.	78	4	87	0	.	296
TACSTD2	4070	hgsc.bcm.edu;broad.mit.edu	37	1	59041883	59041883	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TACSTD2	NM_002353	exon1	c.946delG	p.E316fs	.	.	121	10	64	0	.	90
TAF1B	9014	hgsc.bcm.edu	37	2	9994472	9994472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAF1B	NM_005680	exon5	c.321delT	p.N107fs	.	.	165	10	155	0	.	92
TAF3	83860	hgsc.bcm.edu	37	10	8007022	8007022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAF3	NM_031923	exon3	c.T1549C	p.S517P	.	.	85	4	82	0	.	69
TAGAP	117289	hgsc.bcm.edu	37	6	159464683	159464683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAGAP	NM_138810	exon4	c.A86G	p.D29G	.	.	159	4	103	0	.	91
TAGLN3	29114	bcgsc.ca	37	3	111730618	111730618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAGLN3	NM_001008272	exon4	c.A364G	p.M122V	.	.	156	6	81	0	.	90
TANC2	26115	hgsc.bcm.edu;broad.mit.edu	37	17	61086972	61086972	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TANC2	NM_025185	exon1	c.52delA	p.K18fs	.	.	161	10	113	0	.	24
TANC2	26115	hgsc.bcm.edu;broad.mit.edu	37	17	61271374	61271374	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TANC2	NM_025185	exon4	c.234delC	p.G78fs	.	.	115	10	95	0	.	24
TANGO2	128989	hgsc.bcm.edu	37	22	20024329	20024329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152906	exon2	c.T8C	p.I3T	.	.	126	3	98	0	.	.
TAOK1	57551	hgsc.bcm.edu;broad.mit.edu	37	17	27805327	27805327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAOK1	NM_025142	exon6	c.411delG	p.Q137fs	.	.	237	15	215	0	.	521
TARS2	80222	hgsc.bcm.edu;broad.mit.edu	37	1	150469064	150469064	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TARS2	NM_025150	exon8	c.881delG	p.R294fs	.	.	216	14	124	0	.	91
TAS2R13	50838	bcgsc.ca	37	12	11061044	11061044	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAS2R13	NM_023920	exon1	c.854delA	p.N285fs	.	.	54	5	101	0	.	154
TAS2R20	259295	bcgsc.ca	37	12	11149630	11149630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAS2R20	NM_176889	exon1	c.G845A	p.G282E	.	.	112	7	134	1	.	90
TAS2R8	50836	hgsc.bcm.edu	37	12	10958681	10958681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAS2R8	NM_023918	exon1	c.T899C	p.L300P	.	.	128	4	127	0	.	92
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu	37	7	27827096	27827096	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAX1BP1	NM_006024	exon8	c.912delA	p.L304fs	.	.	172	14	117	0	.	153
TBC1D1	23216	broad.mit.edu;bcgsc.ca	37	4	38020014	38020014	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D1	NM_015173	exon4	c.922delA	p.K308fs	.	.	84	9	82	0	.	91
TBC1D15	64786	hgsc.bcm.edu;bcgsc.ca	37	12	72300901	72300901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D15	NM_022771	exon12	c.T1334C	p.M445T	.	.	97	4	89	0	.	90
TBC1D16	125058	bcgsc.ca	37	17	77984142	77984142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D16	NM_019020	exon3	c.G596A	p.G199E	.	.	215	9	141	1	.	90
TBC1D8B	54885	bcgsc.ca	37	X	106092525	106092525	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D8B	NM_198881	exon12	c.1888delG	p.G630fs	.	.	279	12	179	1	.	133
TBC1D8B	54885	hgsc.bcm.edu	37	X	106116905	106116905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D8B	NM_017752	exon21	c.A3073G	p.R1025G	.	.	112	3	94	0	.	133
TBL1Y	90665	hgsc.bcm.edu	37	Y	6938816	6938816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_134258	exon9	c.T646C	p.S216P	.	.	98	4	122	0	.	.
TBX10	347853	hgsc.bcm.edu;broad.mit.edu	37	11	67402373	67402373	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBX10	NM_005995	exon3	c.291delC	p.P97fs	.	.	190	16	109	0	.	90
TBX18	9096	hgsc.bcm.edu;broad.mit.edu	37	6	85446613	85446613	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBX18	NM_001080508	exon8	c.1614delC	p.P538fs	.	.	193	12	130	0	.	73
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu	37	X	102841728	102841728	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL4	NM_001006935	exon3	c.125delA	p.E42fs	.	.	143	10	116	0	.	130
TCEAL6	158931	bcgsc.ca	37	X	101395780	101395780	+	Missense_Mutation	SNP	T	T	G	rs111588852		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL6	NM_001006938	exon3	c.A524C	p.Q175P	.	.	145	6	73	2	.	91
TCEAL6	158931	hgsc.bcm.edu	37	X	101395773	101395773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL6	NM_001006938	exon3	c.C531A	p.D177E	.	.	143	5	79	0	.	91
TCEAL6	158931	hgsc.bcm.edu	37	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	.	.	140	19	74	0	.	91
TCEAL6	158931	hgsc.bcm.edu	37	X	101395786	101395786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL6	NM_001006938	exon3	c.T518C	p.F173S	.	.	165	7	89	0	.	91
TCEB3	6924	hgsc.bcm.edu;broad.mit.edu	37	1	24077422	24077422	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEB3	NM_003198	exon4	c.405delG	p.E135fs	.	.	129	10	71	0	.	91
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu	37	5	145890008	145890008	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCERG1	NM_006706	exon22	c.3100delA	p.K1034fs	.	.	120	10	70	0	.	92
TCERG1L	256536	hgsc.bcm.edu	37	10	132891517	132891517	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCERG1L	NM_174937	exon12	c.1669delA	p.R557fs	.	.	135	10	126	0	.	138
TCP11	6954	hgsc.bcm.edu;broad.mit.edu	37	6	35096919	35096919	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCP11	NM_001093728	exon4	c.316delT	p.W106fs	.	.	182	12	135	0	.	95
TCP11L1	55346	hgsc.bcm.edu	37	11	33079469	33079469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCP11L1	NM_001145541	exon5	c.T422C	p.L141P	.	.	96	3	77	0	.	90
TCP11L1	55346	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33083146	33083146	+	Silent	SNP	C	C	T	rs145755006		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCP11L1	NM_001145541	exon7	c.C846T	p.H282H	.	.	123	29	92	0	C|1.000;T|0.000	90
TCTN2	79867	hgsc.bcm.edu;broad.mit.edu	37	12	124155858	124155858	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCTN2	NM_024809	exon1	c.71delG	p.W24fs	.	.	140	10	74	0	.	91
TEAD4	7004	hgsc.bcm.edu	37	12	3128311	3128311	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TEAD4	NM_003213	exon8	c.T558C	p.A186A	.	.	92	5	115	0	.	90
TEKT5	146279	hgsc.bcm.edu	37	16	10788409	10788409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TEKT5	NM_144674	exon1	c.T322C	p.S108P	.	.	79	5	53	0	.	92
TENM3	55714	hgsc.bcm.edu;broad.mit.edu	37	4	183713573	183713573	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001080477	exon25	c.5748delC	p.N1916fs	.	.	176	11	139	0	.	.
TENM4	26011	hgsc.bcm.edu;broad.mit.edu	37	11	78423720	78423720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001098816	exon26	c.3861delC	p.P1287fs	.	.	150	10	81	0	.	.
TENM4	26011	hgsc.bcm.edu;broad.mit.edu	37	11	78614323	78614323	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001098816	exon7	c.739delC	p.L247fs	.	.	168	10	95	0	.	.
TET2	54790	hgsc.bcm.edu;broad.mit.edu	37	4	106158589	106158589	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TET2	NM_017628	exon3	c.3490delT	p.F1164fs	.	.	150	11	227	0	.	4618
TEX15	56154	hgsc.bcm.edu;bcgsc.ca	37	8	30703400	30703400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TEX15	NM_031271	exon1	c.A3134G	p.D1045G	.	.	69	4	99	0	.	97
TGIF2	60436	hgsc.bcm.edu	37	20	35219773	35219773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TGIF2	NM_021809	exon3	c.A653G	p.Q218R	.	.	119	3	112	0	.	92
TGM3	7053	hgsc.bcm.edu;broad.mit.edu	37	20	2291043	2291043	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TGM3	NM_003245	exon3	c.401delT	p.L134fs	.	.	163	10	122	0	.	139
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	169646335	169646336	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THBS2	NM_003247	exon5	c.650_651del	p.217_217del	.	.	112	17	87	0	.	95
THG1L	54974	hgsc.bcm.edu	37	5	157161681	157161681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THG1L	NM_017872	exon3	c.T466C	p.F156L	.	.	191	8	99	0	.	90
THOC3	84321	hgsc.bcm.edu;broad.mit.edu	37	5	175394993	175394993	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THOC3	NM_032361	exon1	c.219delG	p.G73fs	.	.	169	13	83	0	.	68
THRA	7067	hgsc.bcm.edu;bcgsc.ca	37	17	38230771	38230771	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THRA	NM_001190918	exon2	c.T30C	p.C10C	.	.	117	5	83	0	.	186
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu	37	21	32519299	32519299	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TIAM1	NM_003253	exon21	c.3389delG	p.G1130fs	.	.	155	10	196	0	.	724
TICRR	90381	hgsc.bcm.edu;broad.mit.edu	37	15	90143884	90143884	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152259	exon9	c.2121delA	p.G707fs	.	.	212	13	213	0	.	.
TIGD2	166815	bcgsc.ca	37	4	90035081	90035081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TIGD2	NM_145715	exon1	c.T956C	p.V319A	.	.	146	5	204	0	.	90
TIGD5	84948	bcgsc.ca	37	8	144681778	144681778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TIGD5	NM_032862	exon1	c.G1705T	p.G569W	.	.	307	10	64	0	.	90
TIGD6	81789	hgsc.bcm.edu;broad.mit.edu	37	5	149375707	149375707	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TIGD6	NM_001243253	exon2	c.205delA	p.R69fs	.	.	144	13	63	0	.	91
TINAG	27283	hgsc.bcm.edu;broad.mit.edu	37	6	54191629	54191629	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TINAG	NM_014464	exon4	c.539delG	p.W180fs	.	.	132	11	104	0	.	93
TLK1	9874	broad.mit.edu;bcgsc.ca	37	2	171914692	171914692	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLK1	NM_012290	exon5	c.422delG	p.G141fs	.	.	74	7	72	0	.	439
TLK1	9874	hgsc.bcm.edu;broad.mit.edu	37	2	171862754	171862754	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLK1	NM_012290	exon18	c.1807delA	p.I603fs	.	.	198	12	176	0	.	439
TLN1	7094	hgsc.bcm.edu	37	9	35717439	35717439	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLN1	NM_006289	exon20	c.2164-2A>G	.	.	.	73	4	66	0	.	609
TLN2	83660	hgsc.bcm.edu	37	15	62948266	62948266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLN2	NM_015059	exon5	c.T641G	p.L214R	.	.	147	3	133	0	.	573
TLR10	81793	hgsc.bcm.edu;broad.mit.edu	37	4	38777029	38777029	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLR10	NM_001017388	exon2	c.183delT	p.F61fs	.	.	202	13	166	0	.	522
TLR1	7096	hgsc.bcm.edu;broad.mit.edu	37	4	38800352	38800352	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLR1	NM_003263	exon4	c.101delA	p.N34fs	.	.	151	11	128	0	.	524
TM9SF1	10548	hgsc.bcm.edu	37	14	24662001	24662001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TM9SF1	NM_001014842	exon3	c.A820G	p.T274A	.	.	123	5	137	0	.	91
TMC7	79905	bcgsc.ca	37	16	19027797	19027797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMC7	NM_024847	exon3	c.T337C	p.Y113H	.	.	92	4	118	1	.	93
TMEM117	84216	bcgsc.ca	37	12	44781860	44781860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM117	NM_032256	exon8	c.A950G	p.N317S	.	.	69	4	64	0	.	90
TMEM17	200728	hgsc.bcm.edu	37	2	62729911	62729911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM17	NM_198276	exon2	c.G119A	p.S40N	.	.	199	3	207	0	.	90
TMEM176A	55365	bcgsc.ca	37	7	150501517	150501517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM176A	NM_018487	exon6	c.C623G	p.T208S	.	.	196	8	117	0	.	92
TMEM180	79847	hgsc.bcm.edu	37	10	104230585	104230585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM180	NM_024789	exon5	c.A415G	p.T139A	.	.	123	5	103	0	.	91
TMEM237	65062	hgsc.bcm.edu;broad.mit.edu	37	2	202503720	202503720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001044385	exon3	c.128delA	p.N43fs	.	.	222	16	225	0	.	.
TMEM27	57393	hgsc.bcm.edu;broad.mit.edu	37	X	15682878	15682878	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM27	NM_020665	exon1	c.21delT	p.F7fs	.	.	152	11	137	0	.	131
TMPRSS12	283471	hgsc.bcm.edu;broad.mit.edu	37	12	51252715	51252715	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_182559	exon3	c.531delA	p.L177fs	.	.	173	14	93	0	.	.
TMPRSS13	84000	hgsc.bcm.edu	37	11	117782565	117782565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMPRSS13	NM_001206790	exon6	c.A820G	p.T274A	.	.	86	2	53	0	.	91
TMPRSS15	5651	hgsc.bcm.edu	37	21	19704485	19704485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMPRSS15	NM_002772	exon14	c.T1570C	p.C524R	.	.	93	3	73	0	.	160
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu	37	21	19725327	19725327	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMPRSS15	NM_002772	exon10	c.1064delT	p.F355fs	.	.	181	11	181	0	.	160
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu	37	12	83251082	83251082	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMTC2	NM_152588	exon2	c.377delA	p.H126fs	.	.	142	11	141	0	.	92
TNRC6C	57690	hgsc.bcm.edu	37	17	76075517	76075517	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TNRC6C	NM_018996	exon11	c.A3252G	p.A1084A	.	.	150	4	88	0	.	24
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu	37	3	25679663	25679663	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TOP2B	NM_001068	exon5	c.519delA	p.K173fs	.	.	276	20	192	0	.	273
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu	37	17	18217965	18217965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TOP3A	NM_004618	exon1	c.128delA	p.N43fs	.	.	158	13	134	0	.	228
TOR1B	27348	hgsc.bcm.edu;broad.mit.edu	37	9	132571650	132571650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TOR1B	NM_014506	exon5	c.799delA	p.K267fs	.	.	179	17	146	0	.	90
TOX4	9878	hgsc.bcm.edu;broad.mit.edu	37	14	21957371	21957371	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TOX4	NM_014828	exon5	c.619delA	p.K207fs	.	.	121	11	112	0	.	91
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7578457	7578457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G473A	p.R158H	.	.	90	53	153	0	.	70225
TPD52L1	7164	hgsc.bcm.edu	37	6	125541327	125541327	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPD52L1	NM_001003396	exon2	c.A123G	p.A41A	.	.	122	3	95	0	.	90
TPH1	7166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18062243	18062243	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPH1	NM_004179	exon1	c.67delT	p.S23fs	.	.	120	13	84	0	.	90
TPP2	7174	hgsc.bcm.edu;broad.mit.edu	37	13	103326668	103326668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPP2	NM_003291	exon27	c.3368delC	p.A1123fs	.	.	164	10	93	0	.	92
TPR	7175	hgsc.bcm.edu;broad.mit.edu	37	1	186324639	186324639	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPR	NM_003292	exon17	c.2074delA	p.I692fs	.	.	200	12	90	0	.	228
TPR	7175	hgsc.bcm.edu;broad.mit.edu	37	1	186340145	186340145	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPR	NM_003292	exon3	c.287delA	p.N96fs	.	.	177	11	126	0	.	228
TPR	7175	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	186319458	186319458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPR	NM_003292	exon21	c.A2673C	p.K891N	.	.	237	108	138	0	.	228
TPTE2	93492	broad.mit.edu;bcgsc.ca	37	13	20024290	20024290	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPTE2	NM_199254	exon14	c.899delT	p.F300fs	.	.	424	13	322	0	.	92
TRAF3	7187	hgsc.bcm.edu;broad.mit.edu	37	14	103371834	103371834	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRAF3	NM_145725	exon12	c.1420delT	p.F474fs	.	.	178	11	155	0	.	659
TRAF3IP1	26146	hgsc.bcm.edu;broad.mit.edu	37	2	239237915	239237915	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRAF3IP1	NM_015650	exon5	c.847delA	p.K283fs	.	.	154	12	100	0	.	228
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu	37	3	36897154	36897154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRANK1	NM_014831	exon12	c.3927delT	p.F1309fs	.	.	175	12	119	0	.	24
TRAPPC8	22878	hgsc.bcm.edu;broad.mit.edu	37	18	29429604	29429604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRAPPC8	NM_014939	exon25	c.3660delA	p.K1220fs	.	.	161	10	148	0	.	159
TREH	11181	bcgsc.ca	37	11	118529044	118529044	+	Splice_Site	SNP	C	C	G	rs72488014		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TREH	.	.	.	.	.	.	336	5	243	3	.	46
TREM1	54210	hgsc.bcm.edu;broad.mit.edu	37	6	41250470	41250470	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TREM1	NM_001242590	exon2	c.69delA	p.K23fs	.	.	230	14	137	0	.	577
TREX1	11277	hgsc.bcm.edu;broad.mit.edu	37	3	48508447	48508447	+	Frame_Shift_Del	DEL	C	C	-	rs78762691		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TREX1	NM_016381	exon1	c.558delC	p.F186fs	.	.	154	10	111	0	.	227
TRH	7200	hgsc.bcm.edu;broad.mit.edu	37	3	129695643	129695643	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRH	NM_007117	exon3	c.313delG	p.G105fs	.	.	144	10	72	0	.	91
TRIM3	10612	hgsc.bcm.edu	37	11	6472208	6472208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIM3	NM_001248006	exon9	c.A1784G	p.K595R	.	.	94	4	55	0	.	714
TRIM32	22954	hgsc.bcm.edu;broad.mit.edu	37	9	119461528	119461528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIM32	NM_012210	exon2	c.1507delG	p.G503fs	.	.	171	11	165	0	.	650
TRIM39-RPP21	202658	bcgsc.ca	37	6	30314569	30314569	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001199119	exon10	c.G1494A	p.Q498Q	.	.	169	5	97	0	.	.
TRIM46	80128	hgsc.bcm.edu;broad.mit.edu	37	1	155156381	155156381	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIM46	NM_025058	exon10	c.1995delG	p.S665fs	.	.	133	11	79	0	.	228
TRIM51	84767	broad.mit.edu;bcgsc.ca	37	11	55656479	55656479	+	Splice_Site	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_032681	exon5	c.761+2T>-	.	.	.	261	7	159	0	.	.
TRIM66	9866	hgsc.bcm.edu;broad.mit.edu	37	11	8642705	8642705	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIM66	NM_014818	exon15	c.2891delC	p.P964fs	.	.	209	13	118	0	.	68
TRIO	7204	bcgsc.ca	37	5	14293154	14293154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIO	NM_007118	exon6	c.T1087C	p.F363L	.	.	137	5	82	0	.	562
TRIO	7204	hgsc.bcm.edu;broad.mit.edu	37	5	14387627	14387627	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIO	NM_007118	exon22	c.3651delA	p.I1217fs	.	.	366	22	197	0	.	562
TRIOBP	11078	bcgsc.ca	37	22	38120006	38120006	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIOBP	NM_001039141	exon7	c.T1443C	p.C481C	.	.	314	19	288	7	.	136
TRMT10B	158234	hgsc.bcm.edu;broad.mit.edu	37	9	37762657	37762657	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_144964	exon3	c.270delA	p.R90fs	.	.	158	10	192	0	.	.
TRMT11	60487	hgsc.bcm.edu	37	6	126319442	126319442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRMT11	NM_001031712	exon5	c.A368G	p.E123G	.	.	65	2	54	0	.	91
TRO	7216	hgsc.bcm.edu	37	X	54955827	54955827	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRO	NM_001039705	exon12	c.A2670G	p.G890G	.	.	119	4	145	0	.	131
TRUB1	142940	hgsc.bcm.edu;broad.mit.edu	37	10	116698055	116698055	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRUB1	NM_139169	exon1	c.43delA	p.K15fs	.	.	188	14	177	0	.	90
TSKU	25987	hgsc.bcm.edu;broad.mit.edu	37	11	76507185	76507185	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TSKU	NM_015516	exon2	c.525delC	p.H175fs	.	.	163	10	103	0	.	90
TSPAN19	144448	hgsc.bcm.edu;broad.mit.edu	37	12	85411267	85411267	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TSPAN19	NM_001100917	exon7	c.562delT	p.C188fs	.	.	140	11	125	0	.	1
TSPYL2	64061	hgsc.bcm.edu;broad.mit.edu	37	X	53112052	53112052	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TSPYL2	NM_022117	exon1	c.372delG	p.S124fs	.	.	105	10	105	0	.	130
TSTD2	158427	hgsc.bcm.edu;broad.mit.edu	37	9	100389705	100389705	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TSTD2	NM_139246	exon2	c.140delA	p.K47fs	.	.	189	13	167	0	.	92
TTC3	7267	hgsc.bcm.edu;broad.mit.edu	37	21	38555184	38555184	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTC3	NM_001001894	exon36	c.4726delA	p.K1576fs	.	.	212	13	179	0	.	590
TTC37	9652	hgsc.bcm.edu;broad.mit.edu	37	5	94856440	94856440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTC37	NM_014639	exon20	c.2094delA	p.K698fs	.	.	237	16	113	0	.	94
TTC37	9652	hgsc.bcm.edu;broad.mit.edu	37	5	94865825	94865825	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTC37	NM_014639	exon11	c.860delA	p.K287fs	.	.	145	10	73	0	.	94
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu	37	18	21662914	21662914	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTC39C	NM_001135993	exon6	c.853delT	p.F285fs	.	.	162	10	127	0	.	91
TTF2	8458	hgsc.bcm.edu;broad.mit.edu	37	1	117618310	117618310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTF2	NM_003594	exon5	c.1104delC	p.S368fs	.	.	384	23	192	0	.	91
TTLL11	158135	hgsc.bcm.edu;broad.mit.edu	37	9	124736391	124736391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTLL11	NM_001139442	exon6	c.1648delG	p.V550fs	.	.	160	10	110	0	.	112
TTLL7	79739	hgsc.bcm.edu;broad.mit.edu	37	1	84386998	84386998	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTLL7	NM_024686	exon11	c.1222delA	p.R408fs	.	.	192	12	93	0	.	91
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179439261	179439261	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon326	c.71598delA	p.K23866fs	.	.	175	9	167	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179429759	179429759	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon326	c.81100delA	p.I27034X	.	.	178	11	166	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179516415	179516415	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon206	c.39441delA	p.K13147fs	.	.	253	19	248	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179554548	179554548	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon122	c.31838delC	p.P10613fs	.	.	132	11	101	0	.	636
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179427959	179427959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon326	c.A82900G	p.T27634A	.	.	321	108	304	0	.	636
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179500233	179500233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon227	c.G41818A	p.E13940K	.	.	165	49	153	0	.	636
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	.	.	367	43	318	37	G|0.998;A|0.002	90
TULP1	7287	hgsc.bcm.edu;broad.mit.edu	37	6	35473878	35473878	+	Frame_Shift_Del	DEL	G	G	-	rs62636292		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TULP1	NM_003322	exon10	c.901delC	p.Q301fs	.	.	84	11	38	0	.	92
UBA1	7317	bcgsc.ca	37	X	47062535	47062535	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBA1	NM_153280	exon13	c.C1341A	p.R447R	.	.	132	5	130	0	.	227
UBA3	9039	bcgsc.ca	37	3	69106429	69106429	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBA3	NM_003968	exon12	c.T942C	p.A314A	.	.	212	6	186	0	.	227
UBE2J1	51465	hgsc.bcm.edu;broad.mit.edu	37	6	90048232	90048232	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBE2J1	NM_016021	exon4	c.268delA	p.I90fs	.	.	196	13	147	0	.	226
UBE2J2	118424	hgsc.bcm.edu;broad.mit.edu	37	1	1192662	1192662	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBE2J2	NM_194315	exon5	c.249delT	p.F83fs	.	.	155	10	89	0	.	90
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu	37	17	74387131	74387131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBE2O	NM_022066	exon18	c.3772delC	p.L1258fs	.	.	152	11	107	0	.	272
UBE3D	90025	hgsc.bcm.edu;broad.mit.edu	37	6	83733743	83733743	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_198920	exon6	c.682delT	p.Y228fs	.	.	217	15	147	0	.	.
UBQLN1	29979	hgsc.bcm.edu	37	9	86284243	86284243	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBQLN1	NM_013438	exon8	c.1106-1G>A	.	.	.	80	3	78	0	.	90
UBR1	197131	hgsc.bcm.edu;bcgsc.ca	37	15	43314950	43314950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBR1	NM_174916	exon26	c.A2789G	p.Q930R	.	.	65	4	54	0	.	91
UBR3	130507	broad.mit.edu	37	2	170804205	170804205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBR3	NM_172070	exon22	c.G3064A	p.D1022N	.	.	84	3	72	0	.	68
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu	37	13	96684195	96684195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UGGT2	NM_020121	exon2	c.189delA	p.K63fs	.	.	205	13	140	0	.	92
UGT1A1	54658	hgsc.bcm.edu;broad.mit.edu	37	2	234668947	234668947	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UGT1A1	NM_000463	exon1	c.14delC	p.S5fs	.	.	159	10	137	0	.	24
UGT2B28	54490	bcgsc.ca	37	4	70152481	70152481	+	Silent	SNP	A	A	G	rs141618560		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UGT2B28	NM_053039	exon3	c.A882G	p.E294E	.	.	160	5	146	0	A|1.000;G|0.000	91
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu	37	4	69962593	69962593	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UGT2B7	NM_001074	exon1	c.355delT	p.F119fs	.	.	165	10	133	0	.	92
ULK1	8408	hgsc.bcm.edu;broad.mit.edu	37	12	132400971	132400971	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ULK1	NM_003565	exon20	c.1907delC	p.T636fs	.	.	194	12	132	0	.	758
UNC13A	23025	hgsc.bcm.edu	37	19	17758258	17758258	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UNC13A	NM_001080421	exon16	c.A1860G	p.T620T	.	.	109	4	117	0	.	25
UNC80	285175	hgsc.bcm.edu;bcgsc.ca	37	2	210809878	210809878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UNC80	NM_032504	exon45	c.A6956G	p.E2319G	.	.	97	4	97	0	.	90
UPK3A	7380	hgsc.bcm.edu	37	22	45681941	45681941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UPK3A	NM_006953	exon2	c.A172G	p.T58A	.	.	112	7	101	0	.	90
URGCP	55665	hgsc.bcm.edu;broad.mit.edu	37	7	43916637	43916637	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	URGCP	NM_001077663	exon6	c.2425delA	p.T809fs	.	.	196	12	105	0	.	94
USP14	9097	hgsc.bcm.edu;broad.mit.edu	37	18	198083	198083	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP14	NM_005151	exon9	c.712delA	p.K238fs	.	.	172	12	117	0	.	659
USP14	9097	hgsc.bcm.edu;broad.mit.edu	37	18	210016	210016	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP14	NM_005151	exon14	c.1210delT	p.F404fs	.	.	180	13	162	0	.	659
USP21	27005	hgsc.bcm.edu	37	1	161130443	161130443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP21	NM_012475	exon2	c.T13C	p.S5P	.	.	91	2	54	0	.	660
USP21	27005	hgsc.bcm.edu;broad.mit.edu	37	1	161134345	161134345	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP21	NM_012475	exon10	c.1327delA	p.K443fs	.	.	236	15	158	0	.	660
USP24	23358	hgsc.bcm.edu;broad.mit.edu	37	1	55559661	55559661	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP24	NM_015306	exon52	c.6303delA	p.K2101fs	.	.	268	21	171	0	.	521
USP31	57478	bcgsc.ca	37	16	23099117	23099117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP31	NM_020718	exon8	c.A1455G	p.I485M	.	.	61	4	56	0	.	663
USP37	57695	hgsc.bcm.edu;broad.mit.edu	37	2	219350428	219350428	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP37	NM_020935	exon16	c.1629delG	p.G543fs	.	.	179	11	160	0	.	661
USP38	84640	hgsc.bcm.edu	37	4	144135539	144135539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP38	NM_032557	exon9	c.T2410C	p.S804P	.	.	130	4	112	0	.	660
USP38	84640	hgsc.bcm.edu	37	4	144135649	144135649	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP38	NM_032557	exon9	c.T2520C	p.Y840Y	.	.	82	2	66	0	.	660
USP9X	8239	hgsc.bcm.edu	37	X	41075804	41075804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP9X	NM_001039591	exon35	c.A5984G	p.N1995S	.	.	114	5	116	0	.	563
USP9X	8239	hgsc.bcm.edu;broad.mit.edu	37	X	41069767	41069767	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP9X	NM_001039591	exon33	c.5021delG	p.W1674fs	.	.	149	11	146	0	.	563
UTP11L	51118	hgsc.bcm.edu;broad.mit.edu	37	1	38483393	38483393	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UTP11L	NM_016037	exon3	c.179delA	p.E60fs	.	.	265	16	160	0	.	90
UTP20	27340	hgsc.bcm.edu;broad.mit.edu	37	12	101746865	101746865	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UTP20	NM_014503	exon40	c.5065delA	p.K1689fs	.	.	188	13	144	0	.	155
VAMP8	8673	broad.mit.edu;bcgsc.ca	37	2	85806162	85806181	+	Frame_Shift_Del	DEL	CGTGTGCGGAACCTGCAAAG	CGTGTGCGGAACCTGCAAAG	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	CGTGTGCGGAACCTGCAAAG	CGTGTGCGGAACCTGCAAAG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VAMP8	NM_003761	exon2	c.34_53del	p.12_18del	.	.	84	7	78	0	.	514
VAPB	9217	hgsc.bcm.edu;broad.mit.edu	37	20	57019177	57019177	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VAPB	NM_004738	exon6	c.618delC	p.S206fs	.	.	175	12	160	0	.	226
VCAM1	7412	hgsc.bcm.edu;broad.mit.edu	37	1	101197977	101197977	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VCAM1	NM_001078	exon7	c.1529delC	p.A510fs	.	.	101	11	57	0	.	90
VCAN	1462	bcgsc.ca	37	5	82833370	82833370	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VCAN	NM_004385	exon8	c.A4548G	p.K1516K	.	.	108	4	77	0	.	238
VEZT	55591	hgsc.bcm.edu;broad.mit.edu	37	12	95694123	95694123	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VEZT	NM_017599	exon12	c.2014delA	p.K672fs	.	.	193	12	94	0	.	23
VIL1	7429	hgsc.bcm.edu;broad.mit.edu	37	2	219292980	219292980	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VIL1	NM_007127	exon6	c.487delG	p.G163fs	.	.	188	12	215	0	.	91
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu	37	3	42573788	42573788	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VIPR1	NM_004624	exon10	c.973delC	p.P325fs	.	.	216	14	136	0	.	91
VIT	5212	bcgsc.ca	37	2	37036120	37036120	+	Missense_Mutation	SNP	A	A	G	rs138693084		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VIT	NM_053276	exon15	c.A1895G	p.H632R	.	.	136	5	128	0	A|1.000;G|0.000	92
VMP1	81671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57808841	57808841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VMP1	NM_030938	exon2	c.C34T	p.R12C	.	.	120	31	84	0	.	226
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu	37	1	12433904	12433904	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS13D	NM_015378	exon55	c.10908delA	p.L3636fs	.	.	282	17	195	0	.	95
VPS26A	9559	hgsc.bcm.edu;broad.mit.edu	37	10	70928313	70928313	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS26A	NM_004896	exon8	c.796delA	p.K266fs	.	.	170	13	146	0	.	90
VPS29	51699	hgsc.bcm.edu;broad.mit.edu	37	12	110933940	110933940	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS29	NM_057180	exon3	c.84delA	p.K28fs	.	.	148	11	105	0	.	90
VPS33A	65082	broad.mit.edu;bcgsc.ca	37	12	122748169	122748169	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS33A	NM_022916	exon3	c.246delT	p.F82fs	.	.	115	14	86	0	.	91
VPS37B	79720	hgsc.bcm.edu	37	12	123352099	123352099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS37B	NM_024667	exon4	c.T422C	p.V141A	.	.	86	4	80	0	.	90
VPS8	23355	bcgsc.ca	37	3	184700358	184700358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS8	NM_001009921	exon40	c.T3425C	p.L1142P	.	.	234	8	166	0	.	91
VWA8	23078	bcgsc.ca	37	13	42277478	42277478	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_015058	exon27	c.3186delA	p.K1062fs	.	.	64	6	118	0	.	.
VWA9	81556	hgsc.bcm.edu;bcgsc.ca	37	15	65871932	65871932	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001207058	exon12	c.T1317C	p.A439A	.	.	110	5	98	0	.	.
VWC2L	402117	hgsc.bcm.edu;broad.mit.edu	37	2	215279116	215279116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001080500	exon2	c.199delT	p.F67fs	.	.	115	10	124	0	.	.
WAC	51322	hgsc.bcm.edu;broad.mit.edu	37	10	28908473	28908473	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WAC	NM_016628	exon14	c.1882delT	p.F628fs	.	.	165	10	134	0	.	154
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu	37	4	85614081	85614081	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDFY3	NM_014991	exon59	c.9006delT	p.F3002fs	.	.	166	10	103	0	.	93
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu	37	10	50015979	50015979	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDFY4	NM_020945	exon28	c.4814delC	p.S1605fs	.	.	151	10	130	0	.	22
WDPCP	51057	hgsc.bcm.edu;broad.mit.edu	37	2	63712094	63712094	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDPCP	NM_015910	exon5	c.281delA	p.N94fs	.	.	140	11	108	0	.	91
WDR13	64743	hgsc.bcm.edu	37	X	48458000	48458000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR13	NM_017883	exon4	c.T418C	p.S140P	.	.	96	4	85	0	.	132
WDR17	116966	hgsc.bcm.edu;broad.mit.edu	37	4	177093632	177093632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR17	NM_170710	exon26	c.3326delA	p.E1109fs	.	.	199	15	205	0	.	95
WDR33	55339	hgsc.bcm.edu;broad.mit.edu	37	2	128528521	128528521	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR33	NM_001006623	exon2	c.35delT	p.F12fs	.	.	166	11	175	0	.	90
WDR35	57539	hgsc.bcm.edu	37	2	20188946	20188946	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR35	NM_020779	exon2	c.122delT	p.L41X	.	.	160	10	139	0	.	91
WDR36	134430	bcgsc.ca	37	5	110459536	110459536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR36	NM_139281	exon20	c.C2350T	p.P784S	.	.	73	4	53	1	.	92
WDR38	401551	hgsc.bcm.edu	37	9	127619900	127619900	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR38	NM_001276374	exon9	c.T939C	p.P313P	.	.	95	4	50	0	.	22
WDR54	84058	hgsc.bcm.edu	37	2	74652051	74652051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR54	NM_032118	exon7	c.T584C	p.V195A	.	.	204	5	186	0	.	90
WDR60	55112	hgsc.bcm.edu	37	7	158719144	158719144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR60	NM_018051	exon19	c.T2423C	p.L808P	.	.	197	4	134	0	.	92
WDR63	126820	hgsc.bcm.edu	37	1	85537661	85537661	+	Frame_Shift_Del	DEL	A	A	-	rs74765968		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR63	NM_145172	exon2	c.37delA	p.K13fs	.	.	230	14	162	0	A|0.990;-|0.010	95
WDR64	128025	hgsc.bcm.edu;broad.mit.edu	37	1	241875143	241875143	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR64	NM_144625	exon8	c.984delT	p.T328fs	.	.	195	15	92	0	.	91
WDR64	128025	hgsc.bcm.edu;broad.mit.edu	37	1	241936138	241936138	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR64	NM_144625	exon19	c.2305delA	p.K769fs	.	.	165	12	110	0	.	91
WDR7	23335	hgsc.bcm.edu	37	18	54547190	54547190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR7	NM_015285	exon21	c.T3320C	p.V1107A	.	.	131	4	92	0	.	93
WDR87	83889	bcgsc.ca	37	19	38377565	38377565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_031951	exon6	c.A6629G	p.K2210R	.	.	203	10	226	0	.	.
WDR96	80217	hgsc.bcm.edu;bcgsc.ca	37	10	105971830	105971830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR96	NM_025145	exon5	c.T670C	p.Y224H	.	.	65	4	72	0	.	95
WHSC1L1	54904	hgsc.bcm.edu;bcgsc.ca	37	8	38178646	38178646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WHSC1L1	NM_017778	exon8	c.T1753C	p.S585P	.	.	82	4	83	0	.	658
WIBG	84305	hgsc.bcm.edu;broad.mit.edu	37	12	56296053	56296053	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_032345	exon3	c.218delC	p.P73fs	.	.	140	11	103	0	.	.
WIPF2	147179	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38430226	38430226	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WIPF2	NM_133264	exon6	c.T1155C	p.S385S	.	.	68	24	52	0	.	93
WNT5B	81029	bcgsc.ca	37	12	1755190	1755190	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WNT5B	NM_032642	exon5	c.852delC	p.S284fs	.	.	50	6	71	0	.	562
XBP1	7494	hgsc.bcm.edu	37	22	29195079	29195079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XBP1	NM_001079539	exon2	c.A290G	p.E97G	.	.	113	3	86	0	.	290
XDH	7498	hgsc.bcm.edu	37	2	31587070	31587070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XDH	NM_000379	exon24	c.T2585C	p.V862A	.	.	90	4	92	0	.	158
XIRP2	129446	bcgsc.ca	37	2	168103179	168103179	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XIRP2	NM_152381	exon9	c.A5277G	p.K1759K	.	.	133	4	82	0	.	104
XPNPEP1	7511	hgsc.bcm.edu;bcgsc.ca	37	10	111635319	111635319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPNPEP1	NM_020383	exon15	c.A1358G	p.E453G	.	.	90	4	112	0	.	94
XPO1	7514	hgsc.bcm.edu;broad.mit.edu	37	2	61719275	61719275	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPO1	NM_003400	exon16	c.1782delA	p.K594fs	.	.	150	10	139	0	.	229
XPO5	57510	hgsc.bcm.edu;broad.mit.edu	37	6	43496599	43496599	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPO5	NM_020750	exon24	c.2742delC	p.P914fs	.	.	156	11	106	0	.	271
XPOT	11260	hgsc.bcm.edu;broad.mit.edu	37	12	64827209	64827209	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPOT	NM_007235	exon19	c.2278delT	p.F760fs	.	.	138	12	131	0	.	652
XRCC5	7520	hgsc.bcm.edu;broad.mit.edu	37	2	217057430	217057430	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XRCC5	NM_021141	exon18	c.2013delA	p.L671fs	.	.	281	21	207	0	.	970
YIF1B	90522	hgsc.bcm.edu;broad.mit.edu	37	19	38796095	38796095	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	YIF1B	NM_001039672	exon8	c.842delC	p.P281fs	.	.	166	10	161	0	.	68
YTHDF2	51441	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	29069727	29069727	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	YTHDF2	NM_016258	exon4	c.A945G	p.P315P	.	.	373	47	196	0	.	92
ZAN	7455	bcgsc.ca	37	7	100371473	100371473	+	Missense_Mutation	SNP	C	C	A	rs314299	byfrequency;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZAN	.	.	.	.	.	.	298	14	214	6	C|0.568;T|0.432	142
ZAN	7455	bcgsc.ca	37	7	100371476	100371476	+	Splice_Site	SNP	T	T	G	rs200325383		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZAN	.	.	.	.	.	.	283	4	204	0	.	142
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu	37	3	101371772	101371772	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZBTB11	NM_014415	exon9	c.2320delA	p.S774fs	.	.	190	12	116	0	.	91
ZBTB14	7541	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5291325	5291325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001243702	exon4	c.G882T	p.K294N	.	.	123	43	115	0	.	.
ZBTB21	49854	hgsc.bcm.edu;broad.mit.edu	37	21	43414014	43414014	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001098402	exon3	c.191delA	p.N64fs	.	.	161	12	176	0	.	.
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu	37	2	113089974	113089974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZC3H6	NM_198581	exon12	c.3479delC	p.T1160fs	.	.	170	11	114	0	.	93
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu	37	16	87466762	87466762	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZCCHC14	NM_015144	exon3	c.329delA	p.N110fs	.	.	161	13	152	0	.	154
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu	37	18	60242530	60242530	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZCCHC2	NM_017742	exon13	c.3216delT	p.P1072fs	.	.	168	12	167	0	.	432
ZCCHC9	84240	hgsc.bcm.edu;broad.mit.edu	37	5	80608475	80608475	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZCCHC9	NM_001131036	exon6	c.810delT	p.N270fs	.	.	218	13	107	0	.	91
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu	37	7	100000151	100000151	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZCWPW1	NM_017984	exon16	c.1459delA	p.T487fs	.	.	247	15	161	0	.	90
ZCWPW2	152098	hgsc.bcm.edu;broad.mit.edu	37	3	28557110	28557110	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZCWPW2	NM_001040432	exon7	c.782delG	p.R261fs	.	.	201	12	126	0	.	24
ZDHHC2	51201	hgsc.bcm.edu;bcgsc.ca	37	8	17067945	17067945	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_016353	exon10	c.T906C	p.P302P	.	.	63	4	74	0	.	.
ZFAND5	7763	hgsc.bcm.edu;broad.mit.edu	37	9	74974352	74974352	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZFAND5	NM_001102421	exon4	c.349delA	p.T117fs	.	.	117	10	105	0	.	90
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu	37	8	77775609	77775609	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZFHX4	NM_024721	exon11	c.9659delA	p.E3220fs	.	.	249	15	69	0	.	98
ZFP41	286128	hgsc.bcm.edu;broad.mit.edu	37	8	144332034	144332034	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZFP41	NM_173832	exon2	c.21delA	p.R7fs	.	.	201	13	47	0	.	91
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu	37	5	79732785	79732785	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZFYVE16	NM_001105251	exon4	c.281delA	p.E94fs	.	.	268	16	128	0	.	90
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu	37	8	123965336	123965336	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZHX2	NM_014943	exon3	c.1586delC	p.A529fs	.	.	257	18	69	0	.	227
ZMIZ1	57178	hgsc.bcm.edu	37	10	81058316	81058316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZMIZ1	NM_020338	exon15	c.A1645G	p.S549G	.	.	79	3	73	0	.	292
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu	37	1	35835675	35835675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZMYM4	NM_005095	exon6	c.886delA	p.K296fs	.	.	161	12	102	0	.	291
ZNF148	7707	bcgsc.ca	37	3	124951822	124951822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF148	NM_021964	exon9	c.C1748A	p.P583Q	.	.	150	5	111	0	.	94
ZNF17	7565	broad.mit.edu;bcgsc.ca	37	19	57932545	57932545	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF17	NM_006959	exon3	c.1685delT	p.V562fs	.	.	82	9	81	0	.	90
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu	37	6	27420023	27420023	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF184	NM_007149	exon6	c.1315delA	p.T439fs	.	.	133	10	88	0	.	91
ZNF205	7755	hgsc.bcm.edu;broad.mit.edu	37	16	3163480	3163480	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF205	NM_003456	exon2	c.49delC	p.P17fs	.	.	165	10	122	0	.	90
ZNF271	10778	hgsc.bcm.edu;broad.mit.edu	37	18	32889109	32889109	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF271	.	.	.	.	.	.	179	11	177	0	.	90
ZNF271	10778	hgsc.bcm.edu;broad.mit.edu	37	18	32889977	32889977	+	RNA	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF271	.	.	.	.	.	.	129	10	106	0	.	90
ZNF274	10782	ucsc.edu	37	19	58718359	58718359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF274	.	.	.	.	.	.	50	5	41	4	.	91
ZNF274	10782	ucsc.edu;bcgsc.ca	37	19	58718360	58718360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF274	.	.	.	.	.	.	51	2	42	1	.	91
ZNF286B	729288	hgsc.bcm.edu;broad.mit.edu	37	17	18566149	18566149	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001145045	exon5	c.670delA	p.S224fs	.	.	221	14	233	0	.	.
ZNF287	57336	bcgsc.ca	37	17	16455743	16455743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF287	NM_020653	exon6	c.1713delA	p.K571fs	.	.	41	4	88	0	.	90
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu	37	6	87970974	87970974	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF292	NM_015021	exon8	c.7627delA	p.K2543fs	.	.	102	11	76	0	.	72
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu	37	6	43320194	43320194	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF318	NM_014345	exon5	c.2691delA	p.K897fs	.	.	182	13	120	0	.	157
ZNF334	55713	hgsc.bcm.edu	37	20	45131438	45131438	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF334	NM_018102	exon5	c.540delA	p.K180fs	.	.	198	12	188	0	.	92
ZNF343	79175	hgsc.bcm.edu;broad.mit.edu	37	20	2474194	2474194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF343	NM_024325	exon4	c.148delC	p.Q50fs	.	.	159	10	147	0	.	92
ZNF347	84671	hgsc.bcm.edu;bcgsc.ca	37	19	53645764	53645764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF347	NM_001172675	exon5	c.A320G	p.K107R	.	.	119	5	118	0	.	90
ZNF384	171017	hgsc.bcm.edu	37	12	6777072	6777072	+	Silent	SNP	C	C	T	rs78573212		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF384	NM_001135734	exon11	c.G1542A	p.Q514Q	.	.	44	5	52	0	.	1083
ZNF423	23090	hgsc.bcm.edu;bcgsc.ca	37	16	49672029	49672029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF423	NM_015069	exon4	c.A1034G	p.H345R	.	.	89	6	72	0	.	228
ZNF469	84627	hgsc.bcm.edu	37	16	88498350	88498350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001127464	exon2	c.C4388T	p.T1463M	.	.	60	4	50	0	.	.
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu	37	18	56651255	56651255	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF532	NM_018181	exon11	c.3463delC	p.P1155fs	.	.	254	16	225	0	.	154
ZNF536	9745	hgsc.bcm.edu	37	19	30935844	30935844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF536	NM_014717	exon2	c.C1375T	p.P459S	.	.	73	4	82	0	.	144
ZNF536	9745	hgsc.bcm.edu	37	19	31039960	31039960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF536	NM_014717	exon4	c.T3434C	p.V1145A	.	.	114	4	97	0	.	144
ZNF556	80032	hgsc.bcm.edu	37	19	2877368	2877368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF556	NM_024967	exon4	c.A412G	p.K138E	.	.	95	4	119	0	.	93
ZNF596	169270	bcgsc.ca	37	8	192903	192903	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF596	NM_173539	exon3	c.29delA	p.E10fs	.	.	39	4	64	0	.	90
ZNF597	146434	hgsc.bcm.edu;broad.mit.edu	37	16	3486565	3486565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF597	NM_152457	exon4	c.1134delT	p.F378fs	.	.	165	10	135	0	.	90
ZNF598	90850	hgsc.bcm.edu;bcgsc.ca	37	16	2053113	2053113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF598	NM_178167	exon5	c.T344C	p.L115P	.	.	59	4	52	0	.	432
ZNF658	26149	bcgsc.ca	37	9	40774511	40774511	+	Missense_Mutation	SNP	A	A	G	rs1547270		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF658	NM_033160	exon5	c.T764C	p.I255T	.	.	474	20	424	0	A|1.000;|0.000	45
ZNF667	63934	bcgsc.ca	37	19	56952651	56952651	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF667	NM_022103	exon5	c.1713delT	p.I571fs	.	.	63	6	87	0	.	91
ZNF670	93474	hgsc.bcm.edu	37	1	247200789	247200789	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF670	NM_033213	exon4	c.A1132C	p.S378R	.	.	101	4	58	0	.	91
ZNF678	339500	hgsc.bcm.edu	37	1	227843072	227843072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF678	NM_178549	exon4	c.A1286G	p.E429G	.	.	81	3	45	0	.	91
ZNF678	339500	hgsc.bcm.edu;broad.mit.edu	37	1	227843509	227843509	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF678	NM_178549	exon4	c.1723delA	p.K575fs	.	.	191	12	123	0	.	91
ZNF701	55762	hgsc.bcm.edu;broad.mit.edu	37	19	53085947	53085947	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF701	NM_001172655	exon5	c.833delA	p.E278fs	.	.	126	10	92	0	.	90
ZNF761	388561	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	53959189	53959189	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF761	NM_001008401	exon7	c.T1428C	p.R476R	.	.	40	10	41	0	.	91
ZNF773	374928	broad.mit.edu;bcgsc.ca	37	19	58016144	58016144	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF773	NM_198542	exon2	c.153delG	p.L51fs	.	.	191	9	209	0	.	91
ZNF777	27153	hgsc.bcm.edu	37	7	149152609	149152609	+	Missense_Mutation	SNP	A	A	G	rs3823695	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF777	NM_015694	exon2	c.T505C	p.S169P	.	.	105	5	66	0	.	136
ZNF778	197320	hgsc.bcm.edu	37	16	89294754	89294754	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001201407	exon7	c.T2058C	p.S686S	.	.	114	5	115	0	.	.
ZNF80	7634	hgsc.bcm.edu;broad.mit.edu	37	3	113955740	113955740	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF80	NM_007136	exon1	c.182delA	p.N61fs	.	.	137	11	84	0	.	90
ZNF814	730051	bcgsc.ca	37	19	58385955	58385955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001144989	exon3	c.A803G	p.K268R	.	.	150	9	147	0	.	.
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	52569542	52569542	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001136499	exon7	c.T1593C	p.H531H	.	.	37	4	52	0	.	.
ZRANB1	54764	hgsc.bcm.edu;broad.mit.edu	37	10	126670335	126670335	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZRANB1	NM_017580	exon6	c.1485delT	p.H495fs	.	.	179	11	145	0	.	660
ZSCAN25	221785	hgsc.bcm.edu;broad.mit.edu	37	7	99219096	99219096	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_145115	exon5	c.488delG	p.W163fs	.	.	161	10	120	0	.	.
ZSWIM6	57688	hgsc.bcm.edu	37	5	60839780	60839780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_020928	exon14	c.T3284C	p.V1095A	.	.	143	6	83	0	.	.
ZXDC	79364	hgsc.bcm.edu;broad.mit.edu	37	3	126178522	126178522	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZXDC	NM_025112	exon7	c.2186delA	p.K729fs	.	.	233	14	140	0	.	91
HIP1R	9026	hgsc.bcm.edu	37	12	123340451	123340452	+	Splice_Site	DNP	GT	GT	TG	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
OR11H12	440153	bcgsc.ca	37	14	19806889	19806890	+	RNA	DNP	AA	AA	CC	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
OR11H12	440153	bcgsc.ca	37	14	19806892	19806893	+	RNA	DNP	TG	TG	AT	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
CCDC144B	284047	bcgsc.ca	37	17	18498058	18498059	+	RNA	DNP	TC	TC	CA	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
CDCP2	200008	hgsc.bcm.edu	37	1	54605316	54605317	+	Missense_Mutation	DNP	CA	CA	AT	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	p.M409N	.	.	.	.	.	.	.	
SON	6651	bcgsc.ca	37	21	34948686	34948687	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	p.A2413S	.	.	.	.	.	.	.	
SSTR3	6753	hgsc.bcm.edu	37	22	37602589	37602590	+	Missense_Mutation	DNP	CA	CA	AC	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	p.L418R	.	.	.	.	.	.	.	
CLTCL1	8218	hgsc.bcm.edu	37	22	19188997	19188998	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	p.D1203S	.	.	.	.	.	.	.	
CD207	50489	bcgsc.ca	37	2	71062835	71062836	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	p.R24Q	.	.	.	.	.	.	.	
PIGZ	80235	hgsc.bcm.edu	37	3	196674974	196674975	+	Missense_Mutation	DNP	GC	GC	CG	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	p.A265R	.	.	.	.	.	.	.	
CTC-308K20.3	0	bcgsc.ca	37	5	172403125	172403126	+	RNA	DNP	TG	TG	GC	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
TRDN	10345	hgsc.bcm.edu	37	6	123594509	123594510	+	Splice_Site	DNP	CT	CT	TA	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
RP1-40E16.8	0	bcgsc.ca	37	6	3177483	3177484	+	RNA	DNP	GT	GT	TC	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	GT	GT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
SRRM3	222183	bcgsc.ca	37	7	75914937	75914938	+	Missense_Mutation	DNP	GC	GC	CG	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	p.R580P	.	.	.	.	.	.	.	
KCP	375616	bcgsc.ca	37	7	128533517	128533518	+	RNA	DNP	TG	TG	CT	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
PRKDC	5591	bcgsc.ca	37	8	48805813	48805814	+	Missense_Mutation	DNP	CG	CG	GA	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	p.R1244S	.	.	.	.	.	.	.	
YTHDF3	253943	bcgsc.ca	37	8	64098730	64098731	+	Splice_Site	DNP	AT	AT	GA	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	.	.	.	.	.	
