Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA1	19	hgsc.bcm.edu	37	9	107568697	107568697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA1	NM_005502	exon31	c.A4289G	p.Q1430R	.	.	71	4	170	0	.	1016
ABCA1	19	hgsc.bcm.edu	37	9	107583711	107583711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA1	NM_005502	exon20	c.A2905G	p.S969G	.	.	87	4	118	0	.	1016
ABCA2	20	hgsc.bcm.edu;bcgsc.ca	37	9	139913717	139913717	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA2	NM_212533	exon11	c.T1557C	p.Y519Y	.	.	84	4	159	0	.	90
ABCA4	24	hgsc.bcm.edu	37	1	94497407	94497407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA4	NM_000350	exon27	c.T4055C	p.L1352P	.	.	128	7	180	0	.	162
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94502755	94502755	+	Silent	SNP	C	C	A	rs147884766	byfrequency;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA4	NM_000350	exon25	c.G3759T	p.T1253T	.	.	75	35	132	0	C|0.998;T|0.002	162
ABCA6	23460	hgsc.bcm.edu	37	17	67119418	67119418	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA6	NM_080284	exon10	c.A1398G	p.E466E	.	.	59	4	77	0	.	159
ABCC5	10057	hgsc.bcm.edu	37	3	183706403	183706403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCC5	NM_005688	exon4	c.T400C	p.W134R	.	.	79	4	143	0	.	137
ACACB	32	hgsc.bcm.edu;bcgsc.ca	37	12	109617834	109617834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACACB	NM_001093	exon10	c.T1760C	p.V587A	.	.	76	4	197	0	.	98
ACADL	33	bcgsc.ca	37	2	211068148	211068148	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACADL	NM_001608	exon8	c.T891C	p.D297D	.	.	54	4	81	0	.	90
ACE2	59272	broad.mit.edu;bcgsc.ca	37	X	15603629	15603629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACE2	NM_021804	exon8	c.A869G	p.N290S	.	.	194	6	450	2	.	133
ACIN1	22985	hgsc.bcm.edu	37	14	23551018	23551018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACIN1	NM_001164814	exon5	c.A638G	p.K213R	.	.	77	4	121	0	.	156
ACSM1	116285	hgsc.bcm.edu	37	16	20638583	20638583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACSM1	NM_052956	exon10	c.A1355G	p.D452G	.	.	63	4	204	0	.	91
ADAM10	102	hgsc.bcm.edu	37	15	58919930	58919930	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAM10	NM_001110	exon10	c.T1329C	p.V443V	.	.	90	4	118	0	.	227
ADAM17	6868	hgsc.bcm.edu	37	2	9683394	9683394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ADAM17,NS,carcinoma,+1	ADAM17	NM_003183	exon2	c.T118C	p.S40P	.	.	15	2	43	0	.	659
ADAM23	8745	hgsc.bcm.edu;bcgsc.ca	37	2	207414830	207414830	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAM23	NM_003812	exon9	c.T879C	p.G293G	.	.	92	4	160	0	.	228
ADAMTS20	80070	hgsc.bcm.edu;bcgsc.ca	37	12	43856718	43856718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAMTS20	NM_025003	exon11	c.A1594G	p.T532A	.	.	82	4	145	0	.	795
AGPS	8540	hgsc.bcm.edu	37	2	178310274	178310274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AGPS	NM_003659	exon8	c.A790G	p.N264D	.	.	79	4	144	0	.	92
AHDC1	27245	broad.mit.edu	37	1	27876275	27876275	+	Silent	SNP	G	G	A	rs200498435		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AHDC1	NM_001029882	exon6	c.C2352T	p.G784G	.	.	50	3	100	0	G|1.000;A|0.000	90
AIM1L	55057	hgsc.bcm.edu	37	1	26663170	26663170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AIM1L	NM_001039775	exon12	c.A3965G	p.K1322R	.	.	70	4	141	0	.	91
ALDH1A2	8854	hgsc.bcm.edu;bcgsc.ca	37	15	58306387	58306387	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ALDH1A2	NM_003888	exon2	c.A210G	p.Q70Q	.	.	102	5	191	0	.	226
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73716837	73716837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ALMS1	NM_015120	exon10	c.A7748G	p.K2583R	.	.	50	22	118	0	.	142
ANKFN1	162282	bcgsc.ca	37	17	54559856	54559856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ANKFN1	NM_153228	exon17	c.T2240C	p.L747P	.	.	152	6	285	1	.	136
ANKRD30B	374860	hgsc.bcm.edu	37	18	14748609	14748609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ANKRD30B	NM_001145029	exon1	c.T191C	p.V64A	.	.	77	4	135	0	.	24
ANKRD36BP1	84832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	168216136	168216136	+	RNA	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	.	.	.	.	.	.	200	58	266	1	.	.
ANKRD6	22881	hgsc.bcm.edu	37	6	90326289	90326289	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ANKRD6	NM_001242809	exon8	c.A627G	p.T209T	.	.	100	4	287	0	.	93
AP1G1	164	hgsc.bcm.edu;bcgsc.ca	37	16	71779499	71779499	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G1	NM_001030007	exon19	c.A1758G	p.R586R	.	.	79	4	195	0	.	92
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	71798318	71798318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G1	NM_001030007	exon10	c.G862T	p.G288X	.	.	85	65	255	0	.	92
AP1G2	8906	bcgsc.ca	37	14	24033868	24033868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G2	NM_003917	exon9	c.T824C	p.V275A	.	.	62	4	114	1	.	45
AP4E1	23431	hgsc.bcm.edu;bcgsc.ca	37	15	51289911	51289911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP4E1	NM_007347	exon18	c.A2735G	p.E912G	.	.	44	4	85	0	.	90
APPL2	55198	bcgsc.ca	37	12	105570668	105570668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	APPL2	NM_001251904	exon19	c.T1816C	p.S606P	.	.	87	4	228	3	.	91
AQR	9716	hgsc.bcm.edu	37	15	35167042	35167042	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AQR	NM_014691	exon29	c.A3261G	p.R1087R	.	.	73	4	117	0	.	135
AQR	9716	hgsc.bcm.edu;bcgsc.ca	37	15	35166047	35166047	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AQR	NM_014691	exon30	c.T3579C	p.P1193P	.	.	83	4	122	0	.	135
ARHGAP20	57569	bcgsc.ca	37	11	110477401	110477401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARHGAP20	NM_020809	exon10	c.A848G	p.D283G	.	.	66	4	117	0	.	230
ARHGEF40	55701	hgsc.bcm.edu	37	14	21544999	21544999	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARHGEF40	NM_018071	exon8	c.T1984C	p.L662L	.	.	89	4	168	0	.	228
ARRB2	409	hgsc.bcm.edu;bcgsc.ca	37	17	4624255	4624255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARRB2	NM_001257328	exon15	c.A1214G	p.D405G	.	.	96	4	197	0	.	522
ARSE	415	hgsc.bcm.edu	37	X	2876322	2876322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARSE	NM_000047	exon3	c.A178G	p.T60A	.	.	67	5	207	0	.	131
ASCC3	10973	hgsc.bcm.edu	37	6	101095214	101095214	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASCC3	NM_006828	exon21	c.T3366C	p.G1122G	.	.	67	4	168	0	.	96
ASGR2	433	hgsc.bcm.edu;bcgsc.ca	37	17	7011175	7011175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASGR2	NM_080912	exon5	c.A404G	p.Q135R	.	.	120	6	195	0	.	91
ASXL1	171023	hgsc.bcm.edu;bcgsc.ca	37	20	31024706	31024706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASXL1	NM_015338	exon12	c.T4191C	p.G1397G	.	.	58	5	138	0	.	2057
ATG2B	55102	hgsc.bcm.edu;bcgsc.ca	37	14	96809538	96809538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG2B	NM_018036	exon5	c.T662C	p.L221P	.	.	94	4	153	0	.	93
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	96798729	96798729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG2B	NM_018036	exon10	c.G1381T	p.E461X	.	.	226	84	367	1	.	93
ATG7	10533	hgsc.bcm.edu	37	3	11354826	11354826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG7	NM_001136031	exon6	c.T460C	p.C154R	.	.	93	4	123	0	.	90
ATM	472	bcgsc.ca	37	11	108114749	108114749	+	Missense_Mutation	SNP	G	G	A	rs79075295		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATM	NM_000051	exon6	c.G566A	p.R189K	.	.	199	25	401	10	.	3419
ATP12A	479	hgsc.bcm.edu	37	13	25266933	25266933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATP12A	NM_001185085	exon10	c.T1294C	p.F432L	.	.	98	4	152	0	.	137
ATP8A2	51761	bcgsc.ca	37	13	26114518	26114518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATP8A2	NM_016529	exon8	c.A643G	p.I215V	.	.	123	5	221	2	.	138
ATP8B3	148229	hgsc.bcm.edu;bcgsc.ca	37	19	1785272	1785272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_138813	exon27	c.A3418G	p.T1140A	.	.	63	5	130	0	.	.
ATPAF1	64756	hgsc.bcm.edu	37	1	47118264	47118264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATPAF1	NM_001042546	exon6	c.T646C	p.S216P	.	.	81	4	148	0	.	90
ATRNL1	26033	hgsc.bcm.edu	37	10	116931103	116931103	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATRNL1	NM_001276282	exon8	c.A1401T	p.L467L	.	.	81	6	90	0	.	96
ATXN2	6311	hgsc.bcm.edu;bcgsc.ca	37	12	111963044	111963044	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATXN2	NM_002973	exon6	c.A1128G	p.A376A	.	.	54	4	138	0	.	136
AXDND1	126859	hgsc.bcm.edu	37	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	.	.	234	33	245	0	G|1.000;|0.000	93
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	364598	364598	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AXIN1	NM_181050	exon3	c.964delG	p.E322fs	.	.	37	25	113	0	.	684
AZU1	566	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	828354	828354	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AZU1	NM_001700	exon2	c.C183G	p.F61L	.	.	53	11	95	0	.	91
BAI1	575	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143603336	143603336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BAI1	NM_001702	exon20	c.C3035T	p.T1012M	.	.	52	17	90	1	.	1129
BICD2	23299	hgsc.bcm.edu	37	9	95481866	95481866	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BICD2	NM_001003800	exon6	c.1063-2A>G	.	.	.	56	4	91	0	.	226
BIVM-ERCC5	0	hgsc.bcm.edu	37	13	103525646	103525646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001204425	exon22	c.A4279G	p.T1427A	.	.	94	4	130	0	.	.
BSCL2	26580	hgsc.bcm.edu	37	11	62458612	62458612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BSCL2	NM_001122955	exon8	c.T1007C	p.V336A	.	.	98	5	154	0	.	514
BTBD7	55727	hgsc.bcm.edu	37	14	93709383	93709383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BTBD7	NM_001002860	exon11	c.T2635C	p.S879P	.	.	116	5	171	0	.	91
C12orf57	113246	broad.mit.edu	37	12	7053697	7053697	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C12orf57	NM_138425	exon2	c.C111T	p.D37D	.	.	71	3	111	0	.	90
C15orf41	84529	hgsc.bcm.edu;bcgsc.ca	37	15	36989565	36989565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C15orf41	NM_001130010	exon8	c.T518C	p.L173P	.	.	150	6	210	0	.	46
C17orf85	55421	bcgsc.ca	37	17	3719508	3719508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C17orf85	NM_001114118	exon11	c.A1367G	p.N456S	.	.	168	6	302	2	.	91
C1orf27	54953	hgsc.bcm.edu	37	1	186352261	186352261	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C1orf27	NM_001164245	exon3	c.A207G	p.E69E	.	.	94	5	112	0	.	23
C1orf56	54964	hgsc.bcm.edu	37	1	151020559	151020559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C1orf56	NM_017860	exon1	c.G236A	p.G79E	.	.	97	4	155	0	.	90
C21orf58	54058	hgsc.bcm.edu	37	21	47731472	47731472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C21orf58	NM_058180	exon6	c.C619T	p.P207S	.	.	86	4	147	0	.	91
C2orf88	84281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191064868	191064868	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C2orf88	NM_001042519	exon2	c.G282A	p.G94G	.	.	135	23	233	0	.	68
C6orf223	221416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43970788	43970788	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C6orf223	NM_153246	exon4	c.G654T	p.R218R	.	.	135	45	145	0	.	68
C9orf114	51490	bcgsc.ca	37	9	131587090	131587090	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C9orf114	NM_016390	exon9	c.T771C	p.G257G	.	.	145	5	315	1	.	90
CA5A	763	bcgsc.ca	37	16	87960352	87960352	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CA5A	NM_001739	exon3	c.340+2T>C	.	.	.	16	4	80	1	.	90
CACNB4	785	hgsc.bcm.edu	37	2	152732942	152732942	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CACNB4	NM_001145798	exon5	c.A519G	p.G173G	.	.	100	5	124	0	.	24
CANX	821	hgsc.bcm.edu	37	5	179155615	179155615	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CANX	NM_001746	exon15	c.A1749G	p.S583S	.	.	92	4	226	0	.	90
CAPN11	11131	hgsc.bcm.edu	37	6	44150883	44150883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CAPN11	NM_007058	exon21	c.A2045G	p.Q682R	.	.	77	4	99	0	.	136
CAPN1	823	hgsc.bcm.edu;bcgsc.ca	37	11	64977873	64977873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CAPN1	NM_001198869	exon20	c.T2009C	p.V670A	.	.	75	4	142	0	.	91
CATSPERB	79820	bcgsc.ca	37	14	92150277	92150277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CATSPERB	NM_024764	exon11	c.T875C	p.V292A	.	.	66	4	103	0	.	138
CCDC14	64770	hgsc.bcm.edu;bcgsc.ca	37	3	123634213	123634213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCDC14	NM_022757	exon12	c.G2152A	p.D718N	.	.	78	4	127	0	.	68
CCDC150	284992	hgsc.bcm.edu	37	2	197539019	197539019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001080539	exon10	c.A1084G	p.T362A	.	.	77	4	98	0	.	.
CCDC164	92749	hgsc.bcm.edu	37	2	26644239	26644239	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCDC164	NM_145038	exon3	c.A327G	p.R109R	.	.	95	4	136	0	.	92
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103397021	103397021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001146197	exon4	c.C6026T	p.T2009I	.	.	98	52	150	0	.	.
CCNK	8812	hgsc.bcm.edu;bcgsc.ca	37	14	99968554	99968554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001099402	exon7	c.A586G	p.T196A	.	.	82	4	119	0	.	.
CCSER2	54462	hgsc.bcm.edu	37	10	86131960	86131960	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_018999	exon2	c.T1152C	p.D384D	.	.	98	4	118	0	.	.
CD1E	913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325760	158325760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CD1E	NM_001042584	exon4	c.G769A	p.G257R	.	.	251	67	342	1	.	93
CDC27	996	hgsc.bcm.edu;bcgsc.ca	37	17	45247316	45247316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDC27	NM_001114091	exon4	c.G344A	p.C115Y	.	.	60	4	84	0	.	291
CDC5L	988	broad.mit.edu	37	6	44374099	44374099	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDC5L	NM_001253	exon7	c.T798C	p.H266H	.	.	163	4	200	0	.	229
CDHR1	92211	hgsc.bcm.edu	37	10	85972881	85972881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDHR1	NM_001171971	exon16	c.T1817C	p.L606P	.	.	114	5	143	0	.	91
CDK5RAP1	51654	bcgsc.ca	37	20	31946923	31946923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDK5RAP1	NM_016408	exon14	c.T1690C	p.S564P	.	.	63	4	112	1	.	230
CDKAL1	54901	hgsc.bcm.edu;bcgsc.ca	37	6	21065331	21065331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDKAL1	NM_017774	exon12	c.A1108G	p.T370A	.	.	125	5	146	0	.	92
CDKN3	1033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	54878223	54878223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDKN3	NM_005192	exon5	c.T215C	p.I72T	.	.	42	27	84	0	.	838
CEP152	22995	hgsc.bcm.edu;bcgsc.ca	37	15	49090248	49090248	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CEP152	NM_014985	exon3	c.T88C	p.L30L	.	.	55	4	97	0	.	70
CEP170B	283638	hgsc.bcm.edu	37	14	105350781	105350781	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001112726	exon9	c.A1665G	p.A555A	.	.	50	4	78	0	.	.
CFHR1	3078	broad.mit.edu	37	1	196794765	196794765	+	Missense_Mutation	SNP	A	A	G	rs199672226		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CFHR1	NM_002113	exon2	c.A217G	p.T73A	.	.	312	6	372	1	A|0.999;G|0.001	90
CHD7	55636	hgsc.bcm.edu	37	8	61757545	61757545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHD7	NM_017780	exon22	c.A4973G	p.E1658G	.	.	100	4	147	0	.	141
CHDH	55349	bcgsc.ca	37	3	53857384	53857384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHDH	NM_018397	exon3	c.A652G	p.N218D	.	.	135	6	210	1	.	91
CHEK2	11200	hgsc.bcm.edu	37	22	29130547	29130547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHEK2	NM_145862	exon2	c.T163C	p.S55P	.	.	90	4	204	0	.	1515
CHODL	140578	hgsc.bcm.edu	37	21	19632556	19632556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHODL	NM_024944	exon4	c.C587T	p.T196I	.	.	59	3	92	0	.	91
CHRNA6	8973	hgsc.bcm.edu	37	8	42611479	42611479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHRNA6	NM_004198	exon5	c.T863C	p.V288A	.	.	119	6	153	0	.	90
CHRND	1144	hgsc.bcm.edu;broad.mit.edu	37	2	233400022	233400022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHRND	NM_000751	exon12	c.G1554T	p.X518Y	.	.	60	4	62	0	.	155
CHST14	113189	hgsc.bcm.edu	37	15	40764276	40764276	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHST14	NM_130468	exon1	c.T864C	p.P288P	.	.	77	4	155	0	.	90
CLIP4	79745	hgsc.bcm.edu	37	2	29344378	29344378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CLIP4	NM_024692	exon2	c.T124C	p.S42P	.	.	99	4	145	0	.	91
CLTCL1	8218	hgsc.bcm.edu	37	22	19263298	19263298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CLTCL1	NM_001835	exon2	c.A98G	p.E33G	.	.	85	4	157	0	.	230
CMAS	55907	hgsc.bcm.edu;bcgsc.ca	37	12	22215331	22215331	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CMAS	NM_018686	exon7	c.A1077G	p.K359K	.	.	141	6	255	0	.	93
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41318438	41318438	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CNTN1	NM_001256063	exon6	c.C480G	p.P160P	.	.	118	27	240	0	.	1149
CNTRL	11064	hgsc.bcm.edu;bcgsc.ca	37	9	123857201	123857201	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CNTRL	NM_007018	exon3	c.A384G	p.E128E	.	.	54	4	102	0	.	661
COBL	23242	hgsc.bcm.edu	37	7	51098573	51098573	+	Missense_Mutation	SNP	T	T	A	rs76265922	byfrequency	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COBL	NM_015198	exon9	c.A1440T	p.E480D	.	.	190	11	200	0	T|0.988;A|0.012	95
COL1A1	1277	hgsc.bcm.edu	37	17	48271982	48271982	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COL1A1	NM_000088	exon22	c.A1467G	p.G489G	.	.	47	4	108	0	.	986
COL7A1	1294	hgsc.bcm.edu	37	3	48622492	48622492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COL7A1	NM_000094	exon32	c.A3952G	p.T1318A	.	.	119	8	185	0	.	160
COPS4	51138	hgsc.bcm.edu	37	4	83996548	83996548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COPS4	NM_016129	exon10	c.A1186G	p.T396A	.	.	92	4	149	0	.	226
COQ3	51805	hgsc.bcm.edu;bcgsc.ca	37	6	99823850	99823850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COQ3	NM_017421	exon5	c.A695G	p.E232G	.	.	63	4	164	0	.	91
CORO1A	11151	hgsc.bcm.edu	37	16	30199817	30199817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CORO1A	NM_001193333	exon11	c.A1201G	p.S401G	.	.	89	4	224	0	.	226
CPED1	79974	broad.mit.edu	37	7	120906845	120906845	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_024913	exon20	c.T2616C	p.I872I	.	.	302	6	416	0	.	.
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145619449	145619449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CPSF1	NM_013291	exon33	c.G3811T	p.V1271L	.	.	167	47	272	0	.	91
CRIPT	9419	bcgsc.ca	37	2	46845958	46845958	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CRIPT	NM_014171	exon2	c.T63C	p.D21D	.	.	102	4	158	0	.	90
CTAGE15	441294	broad.mit.edu;mdanderson.org	37	7	143270096	143270096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001008747	exon1	c.A1186C	p.M396L	.	.	915	82	955	1	.	.
CTH	1491	hgsc.bcm.edu;bcgsc.ca	37	1	70881689	70881689	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CTH	NM_153742	exon2	c.A219G	p.K73K	.	.	71	4	115	0	.	91
CTNNAL1	8727	hgsc.bcm.edu;bcgsc.ca	37	9	111734974	111734974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CTNNAL1	NM_003798	exon9	c.A1328G	p.Q443R	.	.	75	4	108	0	.	228
CUL9	23113	hgsc.bcm.edu	37	6	43183025	43183025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CUL9	NM_015089	exon30	c.T5897C	p.V1966A	.	.	66	4	80	0	.	529
CWC27	10283	broad.mit.edu	37	5	64077839	64077839	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CWC27	NM_005869	exon3	c.T231C	p.S77S	.	.	161	3	308	0	.	90
CXorf38	159013	hgsc.bcm.edu;bcgsc.ca	37	X	40489973	40489973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CXorf38	NM_144970	exon6	c.T854C	p.L285P	.	.	67	4	199	0	.	131
CYB5R2	51700	hgsc.bcm.edu;bcgsc.ca	37	11	7687733	7687733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CYB5R2	NM_016229	exon8	c.A607G	p.T203A	.	.	81	4	168	0	.	90
CYP7A1	1581	bcgsc.ca	37	8	59409478	59409478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CYP7A1	NM_000780	exon3	c.A593G	p.Q198R	.	.	140	6	184	0	.	91
DCAF7	10238	hgsc.bcm.edu	37	17	61660890	61660890	+	Splice_Site	SNP	G	G	C	rs202023220		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DCAF7	NM_005828	exon5	c.555+1G>C	.	.	.	85	8	128	0	.	91
DDB2	1643	hgsc.bcm.edu	37	11	47238448	47238448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DDB2	NM_000107	exon3	c.C304T	p.R102W	.	.	78	4	121	0	.	971
DDOST	1650	hgsc.bcm.edu	37	1	20982026	20982026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DDOST	NM_005216	exon5	c.A509G	p.H170R	.	.	92	4	135	0	.	90
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65968921	65968921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DENND4A	NM_001144823	exon24	c.G4228C	p.E1410Q	.	.	120	5	181	0	.	229
DGKH	160851	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42764600	42764600	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DGKH	NM_001204504	exon17	c.C1974T	p.S658S	.	.	58	26	116	1	.	652
DICER1	23405	bcgsc.ca	37	14	95598974	95598974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DICER1	NM_030621	exon4	c.T185C	p.V62A	.	.	83	4	120	1	.	961
DIP2A	23181	hgsc.bcm.edu	37	21	47910539	47910539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DIP2A	NM_206891	exon3	c.A190G	p.N64D	.	.	117	5	214	0	.	24
DKKL1	27120	hgsc.bcm.edu	37	19	49868005	49868005	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DKKL1	NM_014419	exon2	c.C177T	p.F59F	.	.	91	4	160	0	.	658
DLG1	1739	hgsc.bcm.edu	37	3	197023321	197023321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DLG1	NM_001204386	exon3	c.A47G	p.E16G	.	.	82	4	154	0	.	118
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35334624	35334624	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DLGAP3	NM_001080418	exon7	c.C2067T	p.G689G	.	.	64	25	96	0	.	71
DMXL1	1657	hgsc.bcm.edu	37	5	118469314	118469314	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DMXL1	NM_005509	exon12	c.A1695G	p.K565K	.	.	103	5	179	0	.	92
DNAH10	196385	hgsc.bcm.edu;bcgsc.ca	37	12	124305128	124305128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNAH10	NM_207437	exon23	c.A3648G	p.G1216G	.	.	63	4	155	0	.	95
DNAJB9	4189	hgsc.bcm.edu	37	7	108212222	108212222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNAJB9	NM_012328	exon2	c.A52G	p.T18A	.	.	98	4	146	0	.	226
DNAJC7	7266	hgsc.bcm.edu	37	17	40128753	40128753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNAJC7	NM_003315	exon14	c.T1483C	p.X495Q	.	.	72	4	140	0	.	227
DNER	92737	hgsc.bcm.edu	37	2	230272034	230272034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNER	NM_139072	exon10	c.C1637A	p.P546H	.	.	44	4	84	0	.	524
DPPA4	55211	hgsc.bcm.edu	37	3	109052833	109052833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DPPA4	NM_018189	exon2	c.C62A	p.S21Y	.	.	94	4	142	0	.	227
DSCAM	1826	bcgsc.ca	37	21	41711168	41711168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon7	c.A1385G	p.E462G	.	.	78	5	115	3	.	101
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	41455835	41455835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon24	c.G4231T	p.G1411X	.	.	86	35	134	0	.	101
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41455834	41455834	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon25	c.4231+1G>C	.	.	.	87	34	131	0	.	101
DUOX2	50506	hgsc.bcm.edu	37	15	45401796	45401796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DUOX2	NM_014080	exon11	c.T1160C	p.V387A	.	.	77	4	142	0	.	95
DYM	54808	hgsc.bcm.edu	37	18	46906097	46906097	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DYM	NM_017653	exon4	c.T225C	p.G75G	.	.	96	4	116	0	.	226
DZIP3	9666	hgsc.bcm.edu;bcgsc.ca	37	3	108367792	108367792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DZIP3	NM_014648	exon17	c.A1990G	p.K664E	.	.	95	4	133	0	.	91
E2F1	1869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32265257	32265257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	E2F1	NM_005225	exon5	c.A815T	p.Q272L	.	.	111	47	182	0	.	838
E2F8	79733	bcgsc.ca	37	11	19253854	19253854	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	E2F8	NM_024680	exon7	c.T993C	p.V331V	.	.	53	4	86	0	.	91
EDEM1	9695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	5252876	5252876	+	Missense_Mutation	SNP	G	G	C	rs148682616	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EDEM1	NM_014674	exon10	c.G1655C	p.S552T	.	.	73	31	151	0	G|0.999;A|0.000	137
EFHB	151651	hgsc.bcm.edu	37	3	19921261	19921261	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EFHB	NM_144715	exon13	c.G2364A	p.L788L	.	.	61	5	132	0	.	22
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	44109537	44109537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EFHC2	NM_025184	exon5	c.T761C	p.F254S	.	.	60	4	184	0	.	135
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38337733	38337733	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EGFLAM	NM_001205301	exon2	c.207+2T>C	.	.	.	57	26	128	0	.	187
EHBP1L1	254102	hgsc.bcm.edu;bcgsc.ca	37	11	65350029	65350029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EHBP1L1	NM_001099409	exon9	c.A1886G	p.E629G	.	.	76	4	138	0	.	69
EIF2A	83939	bcgsc.ca	37	3	150299418	150299418	+	Missense_Mutation	SNP	A	A	G	rs143760785	by1000genomes	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EIF2A	NM_032025	exon12	c.A1511G	p.D504G	.	.	126	5	150	0	A|0.998;G|0.002	22
ELFN2	114794	hgsc.bcm.edu	37	22	37771035	37771035	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ELFN2	NM_052906	exon3	c.T540C	p.C180C	.	.	94	4	160	0	.	70
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2890914	2890914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EMILIN2	NM_032048	exon4	c.G789T	p.K263N	.	.	38	19	52	0	.	93
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144944289	144944289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EPPK1	NM_031308	exon1	c.G3133A	p.A1045T	.	.	154	52	170	0	.	25
ERBB2IP	55914	hgsc.bcm.edu	37	5	65321309	65321309	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ERBB2IP	NM_001253701	exon11	c.T819C	p.G273G	.	.	56	4	78	0	.	653
ERMAP	114625	bcgsc.ca	37	1	43296763	43296763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ERMAP	NM_001017922	exon4	c.A410G	p.D137G	.	.	127	5	219	1	.	91
EXOC4	60412	hgsc.bcm.edu	37	7	133041177	133041177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EXOC4	NM_021807	exon6	c.T857C	p.L286S	.	.	86	4	109	0	.	159
EXOC5	10640	bcgsc.ca	37	14	57684747	57684747	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EXOC5	NM_006544	exon15	c.A1566G	p.K522K	.	.	207	7	287	0	.	137
EZH1	2145	hgsc.bcm.edu	37	17	40857131	40857131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EZH1	NM_001991	exon17	c.A1910G	p.E637G	.	.	97	5	135	0	.	229
FAM53C	51307	hgsc.bcm.edu	37	5	137682560	137682560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	FAM53C,NS,carcinoma,-1	FAM53C	NM_001135647	exon5	c.T1091C	p.V364A	.	.	72	3	106	0	.	91
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001145402	exon9	c.A2337C	p.P779P	.	.	36	9	58	0	.	.
FANCD2	2177	bcgsc.ca	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FANCD2	NM_001018115	exon26	c.A2391G	p.V797V	.	.	58	4	76	0	A|0.909;G|0.091	229
FANCD2	2177	bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FANCD2	NM_001018115	exon26	c.G2406T	p.Q802H	.	.	66	4	98	0	G|0.990;T|0.010	229
FAT1	2195	hgsc.bcm.edu	37	4	187628064	187628064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FAT1	NM_005245	exon2	c.A2918G	p.N973S	.	.	97	4	204	0	.	34
FBXL4	26235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99374410	99374410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FBXL4	NM_012160	exon3	c.T455G	p.I152S	.	.	63	45	187	0	.	227
FBXW7	55294	hgsc.bcm.edu	37	4	153268212	153268212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FBXW7	NM_033632	exon4	c.T596C	p.L199P	.	.	96	4	179	0	.	6296
FCGR2A	2212	bcgsc.ca	37	1	161479619	161479619	+	Missense_Mutation	SNP	T	T	G	rs199737051		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FCGR2A	NM_001136219	exon4	c.T374G	p.V125G	.	.	356	41	462	17	T|0.999;G|0.001	91
FER	2241	hgsc.bcm.edu	37	5	108436123	108436123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FER	NM_005246	exon17	c.A1951G	p.R651G	.	.	74	4	122	0	.	946
FHL2	2274	hgsc.bcm.edu	37	2	106013154	106013154	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FHL2	.	.	.	.	.	.	90	4	161	0	.	91
FLOT1	10211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30707949	30707949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FLOT1	NM_005803	exon8	c.G709T	p.A237S	.	.	91	24	93	0	.	90
FMNL1	752	hgsc.bcm.edu	37	17	43317843	43317843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL1	NM_005892	exon12	c.A1081G	p.R361G	.	.	81	4	151	0	.	91
FMNL2	114793	hgsc.bcm.edu;bcgsc.ca	37	2	153486415	153486415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL2	NM_052905	exon20	c.A2546G	p.D849G	.	.	87	4	141	0	.	516
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153435453	153435453	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL2	NM_052905	exon8	c.C757G	p.L253V	.	.	50	19	116	0	.	516
FOXG1	2290	hgsc.bcm.edu	37	14	29237096	29237096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FOXG1	NM_005249	exon1	c.T611C	p.L204P	.	.	120	5	175	0	.	660
FOXP1	27086	hgsc.bcm.edu	37	3	71026863	71026863	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FOXP1	NM_001244815	exon11	c.G1365A	p.A455A	.	.	77	4	127	0	.	415
GABRR2	2570	hgsc.bcm.edu	37	6	89977775	89977775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GABRR2	NM_002043	exon5	c.T553C	p.F185L	.	.	89	4	292	0	.	68
GFM2	84340	hgsc.bcm.edu	37	5	74021852	74021852	+	Missense_Mutation	SNP	A	A	T	rs76339998	byfrequency	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GFM2	NM_032380	exon18	c.T1826A	p.F609Y	.	.	98	6	142	0	A|0.963;T|0.037	90
GLCCI1	113263	hgsc.bcm.edu	37	7	8126065	8126065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GLCCI1	NM_138426	exon8	c.G1541A	p.G514D	.	.	161	7	132	0	.	90
GNL1	2794	hgsc.bcm.edu	37	6	30523924	30523924	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GNL1	NM_005275	exon1	c.A57G	p.K19K	.	.	89	4	111	0	.	93
GOLGA4	2803	bcgsc.ca	37	3	37366026	37366026	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GOLGA4	NM_001172713	exon15	c.T2715C	p.S905S	.	.	45	4	112	0	.	93
GPM6B	2824	hgsc.bcm.edu;bcgsc.ca	37	X	13803853	13803853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPM6B	NM_001001995	exon3	c.T256C	p.S86P	.	.	119	5	352	0	.	130
GPR112	139378	bcgsc.ca	37	X	135432361	135432361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR112	NM_153834	exon6	c.T6496C	p.S2166P	.	.	140	5	399	1	.	183
GPR124	25960	hgsc.bcm.edu;bcgsc.ca	37	8	37699046	37699046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR124	NM_032777	exon19	c.T3190C	p.F1064L	.	.	49	4	138	0	.	157
GPR126	57211	ucsc.edu	37	6	142723877	142723877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR126	NM_198569	exon13	c.A1865G	p.N622S	.	.	34	4	57	0	.	91
GPR50	9248	hgsc.bcm.edu	37	X	150349560	150349560	+	Missense_Mutation	SNP	C	C	T	rs199797606		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR50	NM_004224	exon2	c.C1505T	p.T502I	.	.	44	13	184	0	.	176
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757190	54757190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR84	NM_020370	exon2	c.T446C	p.V149A	.	.	50	24	83	0	.	523
GPX8	493869	hgsc.bcm.edu;bcgsc.ca	37	5	54459895	54459895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPX8	NM_001008397	exon3	c.A479G	p.K160R	.	.	52	4	87	0	.	68
GREB1	9687	hgsc.bcm.edu	37	2	11725969	11725969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GREB1	NM_148903	exon9	c.A1097G	p.E366G	.	.	120	5	218	0	.	91
GREB1L	80000	hgsc.bcm.edu	37	18	19100763	19100763	+	Missense_Mutation	SNP	A	A	C	rs201565664		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001142966	exon32	c.A5587C	p.K1863Q	.	.	87	9	106	0	.	.
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu	37	19	48908506	48908506	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GRIN2D	NM_000836	exon3	c.G981A	p.V327V	.	.	15	4	35	0	.	156
GSR	2936	hgsc.bcm.edu;bcgsc.ca	37	8	30537135	30537135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GSR	NM_000637	exon13	c.T1471C	p.F491L	.	.	79	4	319	0	.	94
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu	37	2	197654717	197654717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GTF3C3	NM_001206774	exon5	c.T613C	p.F205L	.	.	84	4	156	0	.	97
GUK1	2987	hgsc.bcm.edu	37	1	228333287	228333287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GUK1	NM_001242840	exon2	c.T137C	p.L46P	.	.	113	5	98	0	.	115
HDGFRP3	0	hgsc.bcm.edu	37	15	83832756	83832756	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HDGFRP3	NM_016073	exon2	c.T156C	p.H52H	.	.	85	4	101	0	.	90
HDLBP	3069	hgsc.bcm.edu;bcgsc.ca	37	2	242194881	242194881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HDLBP	NM_005336	exon8	c.G988A	p.E330K	.	.	82	4	265	0	.	290
HECW2	57520	hgsc.bcm.edu	37	2	197092980	197092980	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HECW2	NM_020760	exon23	c.3765-2A>G	.	.	.	87	4	148	0	.	668
HELLS	3070	hgsc.bcm.edu	37	10	96354567	96354567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HELLS	NM_018063	exon19	c.G2204A	p.R735K	.	.	90	5	102	0	.	92
HERC1	8925	hgsc.bcm.edu	37	15	63966643	63966643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HERC1	NM_003922	exon38	c.A7744G	p.R2582G	.	.	84	4	200	0	.	666
HERC1	8925	hgsc.bcm.edu	37	15	64039146	64039146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HERC1	NM_003922	exon12	c.G2491A	p.D831N	.	.	98	4	141	0	.	666
HJURP	55355	hgsc.bcm.edu	37	2	234756059	234756059	+	Missense_Mutation	SNP	A	A	G	rs200818956	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HJURP	NM_018410	exon5	c.T386C	p.V129A	.	.	87	4	211	0	A|0.999;C|0.001	69
HNRNPF	3185	bcgsc.ca	37	10	43882453	43882453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HNRNPF	NM_001098204	exon4	c.A880G	p.R294G	.	.	85	5	105	1	.	22
HNRNPR	10236	broad.mit.edu	37	1	23645116	23645116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HNRNPR	NM_001102398	exon8	c.T886C	p.F296L	.	.	141	4	270	1	.	24
HOMEZ	57594	hgsc.bcm.edu	37	14	23744844	23744844	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HOMEZ	NM_020834	exon2	c.G1593A	p.E531E	.	.	69	15	134	0	.	22
HRH2	3274	hgsc.bcm.edu	37	5	175111079	175111079	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HRH2	NM_001131055	exon2	c.A843G	p.S281S	.	.	83	4	144	0	.	91
HSPA12B	116835	bcgsc.ca	37	20	3723014	3723014	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HSPA12B	NM_052970	exon4	c.T225C	p.A75A	.	.	71	4	131	1	.	226
HSPBAP1	79663	hgsc.bcm.edu	37	3	122459296	122459296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HSPBAP1	NM_024610	exon8	c.A1363C	p.T455P	.	.	281	16	447	0	.	227
HTT	3064	hgsc.bcm.edu	37	4	3210595	3210595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HTT	NM_002111	exon46	c.A6248G	p.D2083G	.	.	73	4	114	0	.	281
HYOU1	10525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	118925746	118925746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HYOU1	NM_006389	exon6	c.T446C	p.V149A	.	.	31	4	71	0	.	90
ICAM3	3385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10449552	10449552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ICAM3	NM_002162	exon2	c.T149C	p.F50S	.	.	69	6	101	0	.	131
IGF2BP1	10642	broad.mit.edu	37	17	47120863	47120863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	IGF2BP1	NM_006546	exon10	c.C1151T	p.P384L	.	.	84	3	125	0	.	226
IKBKE	9641	bcgsc.ca	37	1	206665008	206665008	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	IKBKE	NM_001193322	exon18	c.A1761G	p.R587R	.	.	158	7	178	1	.	1061
IL13RA1	3597	hgsc.bcm.edu	37	X	117874980	117874980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	IL13RA1	NM_001560	exon2	c.A89G	p.E30G	.	.	37	4	129	0	.	554
IMPG2	50939	hgsc.bcm.edu	37	3	100986353	100986353	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	IMPG2	NM_016247	exon10	c.908+2T>C	.	.	.	80	4	145	0	.	93
ING2	3622	hgsc.bcm.edu	37	4	184426478	184426478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ING2	NM_001564	exon1	c.A130G	p.R44G	.	.	162	7	307	0	.	91
IRX5	10265	hgsc.bcm.edu	37	16	54966777	54966777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	IRX5	NM_001252197	exon2	c.A617G	p.K206R	.	.	91	4	251	0	.	90
ITPKB	3707	bcgsc.ca	37	1	226923825	226923825	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ITPKB	NM_002221	exon2	c.A1335G	p.G445G	.	.	59	7	66	1	.	230
JAK3	3718	bcgsc.ca	37	19	17942063	17942063	+	Silent	SNP	G	G	C	rs201137988		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	JAK3	NM_000215	exon21	c.C2952G	p.R984R	.	.	79	16	143	9	.	2418
KCNAB1	7881	hgsc.bcm.edu;bcgsc.ca	37	3	155838405	155838405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCNAB1	NM_172160	exon1	c.T5C	p.L2P	.	.	63	4	104	0	.	94
KCNJ18	100134444	hgsc.bcm.edu	37	17	21319654	21319654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001194958	exon3	c.G1000A	p.E334K	.	.	214	7	387	0	.	.
KCNMB2	10242	hgsc.bcm.edu;bcgsc.ca	37	3	178560484	178560484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCNMB2	NM_005832	exon6	c.T467C	p.M156T	.	.	79	4	138	0	.	91
KCTD18	130535	hgsc.bcm.edu	37	2	201369657	201369657	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCTD18	NM_152387	exon3	c.A186G	p.G62G	.	.	85	6	167	0	.	91
KIAA0196	9897	hgsc.bcm.edu	37	8	126071720	126071720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA0196	NM_014846	exon13	c.A1586G	p.K529R	.	.	71	4	81	0	.	92
KIAA0226L	80183	bcgsc.ca	37	13	46930597	46930597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_025113	exon10	c.T1300C	p.C434R	.	.	183	8	248	2	.	.
KIAA0368	23392	hgsc.bcm.edu	37	9	114132853	114132853	+	Silent	SNP	T	T	C	rs41307487		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA0368	NM_001080398	exon46	c.A5370G	p.Q1790Q	.	.	83	4	132	0	T|0.997;C|0.003	68
KIAA1033	23325	hgsc.bcm.edu	37	12	105534132	105534132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA1033	NM_015275	exon16	c.A1513G	p.T505A	.	.	85	4	256	0	.	91
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24834953	24834953	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA1217	NM_019590	exon21	c.A5532T	p.T1844T	.	.	196	73	346	0	.	98
KIF6	221458	broad.mit.edu;bcgsc.ca	37	6	39554149	39554149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIF6	NM_145027	exon8	c.C878T	p.S293L	.	.	217	7	253	1	.	713
KLB	152831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	39447995	39447995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KLB	NM_175737	exon4	c.T1649C	p.L550P	.	.	43	4	29	0	.	69
KLHL23	151230	hgsc.bcm.edu	37	2	170598012	170598012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KLHL23	NM_144711	exon3	c.A1331G	p.N444S	.	.	99	4	189	0	.	90
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135012267	135012267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KNDC1	NM_152643	exon14	c.G2255A	p.R752H	.	.	43	13	37	0	.	229
KNTC1	9735	bcgsc.ca;mdanderson.org	37	12	123022962	123022962	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KNTC1	NM_014708	exon4	c.T327C	p.H109H	.	.	20	3	85	0	.	543
KRT8	3856	hgsc.bcm.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	82	6	155	0	.	92
KRTAP4-6	81871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39296198	39296198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_030976	exon1	c.A542T	p.H181L	.	.	181	65	316	0	.	.
KYNU	8942	hgsc.bcm.edu	37	2	143799616	143799616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KYNU	NM_001199241	exon15	c.T1273C	p.C425R	.	.	71	4	158	0	.	92
LAMA1	284217	hgsc.bcm.edu	37	18	7034666	7034666	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LAMA1	NM_005559	exon14	c.A1863G	p.T621T	.	.	86	4	110	0	.	149
LAMA2	3908	hgsc.bcm.edu	37	6	129621989	129621989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LAMA2	NM_000426	exon22	c.G3146A	p.W1049X	.	.	87	4	182	0	.	162
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36974925	36974925	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LBP	NM_004139	exon1	c.G6A	p.G2G	.	.	56	25	80	0	.	91
LCE4A	199834	hgsc.bcm.edu	37	1	152681696	152681696	+	Missense_Mutation	SNP	G	G	T	rs79268808		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LCE4A	NM_178356	exon1	c.G145T	p.G49C	.	.	136	16	126	0	.	90
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88478582	88478582	+	Silent	SNP	C	C	T	rs139213290		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LDB3	NM_001171610	exon12	c.C1971T	p.D657D	.	.	157	9	169	0	C|1.000;T|0.000	92
LIPH	200879	hgsc.bcm.edu	37	3	185226629	185226629	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LIPH	NM_139248	exon10	c.A1305G	p.E435E	.	.	89	4	133	0	.	92
LRIG3	121227	bcgsc.ca	37	12	59279619	59279619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRIG3	NM_153377	exon10	c.A1238G	p.E413G	.	.	49	4	58	0	.	229
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170103365	170103365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRP2	NM_004525	exon21	c.G3040A	p.E1014K	.	.	149	51	259	0	.	175
LRP4	4038	hgsc.bcm.edu	37	11	46890579	46890579	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRP4	NM_002334	exon32	c.A4797G	p.G1599G	.	.	164	7	256	0	.	94
LRRC47	57470	hgsc.bcm.edu	37	1	3703707	3703707	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRRC47	NM_020710	exon2	c.A783G	p.G261G	.	.	70	4	192	0	.	154
LRRC8C	84230	hgsc.bcm.edu	37	1	90180439	90180439	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRRC8C	NM_032270	exon3	c.A2310G	p.E770E	.	.	89	4	118	0	.	97
LRRFIP2	9209	hgsc.bcm.edu	37	3	37151023	37151023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRRFIP2	NM_006309	exon12	c.A604G	p.S202G	.	.	90	4	139	0	.	91
LTK	4058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41799394	41799394	+	Silent	SNP	G	G	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LTK	NM_002344	exon11	c.C1440G	p.A480A	.	.	77	35	117	0	.	1377
MAATS1	89876	hgsc.bcm.edu	37	3	119421983	119421983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_033364	exon1	c.A38G	p.Q13R	.	.	124	6	201	0	.	.
MAP1B	4131	hgsc.bcm.edu	37	5	71492148	71492148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP1B	NM_005909	exon5	c.A2966G	p.K989R	.	.	123	5	222	0	.	155
MAP3K5	4217	ucsc.edu;bcgsc.ca	37	6	136932527	136932527	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP3K5	NM_005923	exon19	c.2416-2A>G	.	.	.	39	4	106	1	.	982
MAP9	79884	hgsc.bcm.edu;bcgsc.ca	37	4	156294381	156294381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP9	NM_001039580	exon4	c.T388C	p.S130P	.	.	78	4	108	0	.	91
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124210	217124210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MARCH4	NM_020814	exon4	c.G1058A	p.G353D	.	.	101	34	166	0	.	69
MARCH7	64844	hgsc.bcm.edu;bcgsc.ca	37	2	160615791	160615791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MARCH7	NM_022826	exon7	c.T1838C	p.L613P	.	.	87	4	158	0	.	68
MASP1	5648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186938875	186938875	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MASP1	NM_001879	exon15	c.C1857T	p.A619A	.	.	140	62	197	0	.	94
MBD4	8930	broad.mit.edu	37	3	129155939	129155939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MBD4	NM_003925	exon3	c.A548G	p.K183R	.	.	150	5	261	0	.	228
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30680046	30680046	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MDC1	NM_014641	exon5	c.1673delG	p.G558fs	.	.	217	41	246	0	.	273
MEGF8	1954	hgsc.bcm.edu	37	19	42866592	42866592	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MEGF8	NM_001271938	exon34	c.A5901G	p.G1967G	.	.	72	4	91	0	.	23
MEOX2	4223	hgsc.bcm.edu	37	7	15725800	15725800	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MEOX2	NM_005924	exon1	c.C228T	p.H76H	.	.	100	20	98	0	.	515
METTL22	79091	hgsc.bcm.edu;bcgsc.ca	37	16	8735035	8735035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	METTL22	NM_024109	exon7	c.T820C	p.C274R	.	.	60	4	238	0	.	90
MICAL2	9645	hgsc.bcm.edu	37	11	12183895	12183895	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MICAL2	NM_014632	exon3	c.C193T	p.L65L	.	.	89	4	161	0	.	92
MLH3	27030	hgsc.bcm.edu	37	14	75514922	75514922	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MLH3	NM_014381	exon2	c.A1437G	p.S479S	.	.	81	4	130	0	.	228
MORC3	23515	hgsc.bcm.edu;bcgsc.ca	37	21	37747486	37747486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MORC3	NM_015358	exon17	c.T2712C	p.A904A	.	.	71	4	83	0	.	92
MRPL37	51253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	54681856	54681856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MRPL37	NM_016491	exon6	c.G1033A	p.V345M	.	.	170	7	361	0	.	90
MRPL48	51642	hgsc.bcm.edu;bcgsc.ca	37	11	73536778	73536778	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_016055	exon4	c.G138A	p.R46R	.	.	63	4	93	0	.	.
MRPS10	55173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42185570	42185570	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MRPS10	NM_018141	exon1	c.G18T	p.A6A	.	.	59	16	85	0	.	90
MSH6	2956	broad.mit.edu	37	2	48026264	48026264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MSH6	NM_000179	exon4	c.A1142G	p.E381G	.	.	187	5	301	0	.	3014
MTMR7	9108	hgsc.bcm.edu	37	8	17218727	17218727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MTMR7	NM_004686	exon4	c.A367G	p.R123G	.	.	97	4	251	0	.	91
MUC13	56667	hgsc.bcm.edu	37	3	124646709	124646709	+	Missense_Mutation	SNP	G	G	A	rs75727765		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MUC13	NM_033049	exon2	c.C181T	p.P61S	.	.	118	7	142	0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087298	9087298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MUC16	NM_024690	exon1	c.C4517T	p.T1506I	.	.	66	28	153	0	.	566
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1256342	1256342	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_002458	exon22	c.C2658T	p.C886C	.	.	100	48	137	0	.	.
MYH14	79784	hgsc.bcm.edu	37	19	50775221	50775221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MYH14	NM_001145809	exon26	c.A3287G	p.D1096G	.	.	68	4	163	0	.	23
NAA35	60560	hgsc.bcm.edu;bcgsc.ca	37	9	88611410	88611410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NAA35	NM_024635	exon12	c.T974C	p.M325T	.	.	90	4	166	0	.	92
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46275954	46275954	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NCOA3	NM_181659	exon18	c.A3390G	p.G1130G	.	.	90	52	178	0	.	229
NCR1	9437	hgsc.bcm.edu	37	19	55421416	55421416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NCR1	NM_001145458	exon5	c.A673G	p.T225A	.	.	80	4	158	0	.	154
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3633	3633	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	ENST00000361390	exon1	c.T327C	p.S109S	.	.	33	4	42	0	.	.
NDUFAF7	55471	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37464985	37464985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_144736	exon4	c.G383A	p.G128E	.	.	38	19	66	1	.	.
NEB	4703	hgsc.bcm.edu	37	2	152392260	152392260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEB	NM_001271208	exon142	c.T21257C	p.V7086A	.	.	90	4	123	0	.	145
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152534626	152534626	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEB	NM_004543	exon33	c.C3331T	p.L1111L	.	.	227	94	382	1	.	145
NEBL	10529	bcgsc.ca	37	10	21147266	21147266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEBL	NM_006393	exon9	c.A806G	p.Y269C	.	.	83	4	131	1	.	92
NEBL	10529	hgsc.bcm.edu;bcgsc.ca	37	10	21134258	21134258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEBL	NM_006393	exon12	c.A1156G	p.R386G	.	.	74	6	105	0	.	92
NEK9	91754	bcgsc.ca	37	14	75553826	75553826	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEK9	NM_033116	exon21	c.T2712C	p.G904G	.	.	153	5	225	1	.	359
NF1	4763	hgsc.bcm.edu	37	17	29559883	29559883	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NF1	NM_000267	exon26	c.T3480C	p.G1160G	.	.	71	4	120	0	.	3353
NHSL2	340527	hgsc.bcm.edu	37	X	71358563	71358563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NHSL2	NM_001013627	exon6	c.T1165C	p.S389P	.	.	107	5	318	0	.	108
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173997373	173997373	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLGN1	NM_014932	exon6	c.T1582G	p.F528V	.	.	201	93	323	0	.	231
NLRC4	58484	hgsc.bcm.edu;bcgsc.ca	37	2	32449645	32449645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLRC4	NM_001199138	exon9	c.T2972C	p.L991S	.	.	75	4	135	0	.	276
NLRP1	22861	bcgsc.ca	37	17	5418093	5418093	+	Missense_Mutation	SNP	A	A	G	rs201882873	byfrequency	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLRP1	NM_033004	exon17	c.T4403C	p.L1468P	.	.	286	33	461	12	A|0.994;G|0.006	274
NNT	23530	hgsc.bcm.edu	37	5	43628311	43628311	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NNT	NM_182977	exon7	c.T786C	p.A262A	.	.	139	6	255	0	.	92
NOTCH1	4851	hgsc.bcm.edu	37	9	139395092	139395092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NOTCH1	NM_017617	exon31	c.A5846G	p.E1949G	.	.	117	5	201	0	.	5459
NOX5	79400	hgsc.bcm.edu	37	15	69341315	69341315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NOX5	NM_024505	exon14	c.T1916C	p.I639T	.	.	72	4	94	0	.	136
NR2C1	7181	hgsc.bcm.edu	37	12	95425194	95425194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NR2C1	NM_001032287	exon11	c.T1324C	p.W442R	.	.	61	4	88	0	.	187
NUP153	9972	bcgsc.ca	37	6	17662301	17662301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NUP153	NM_005124	exon10	c.A1216G	p.T406A	.	.	215	6	262	0	.	637
NUP160	23279	bcgsc.ca	37	11	47825020	47825020	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NUP160	NM_015231	exon22	c.G2745A	p.R915R	.	.	199	6	296	2	.	209
NUP37	79023	hgsc.bcm.edu	37	12	102470582	102470582	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NUP37	NM_024057	exon7	c.T766C	p.L256L	.	.	76	4	143	0	.	205
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50412103	50412103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NUP62	NM_153719	exon3	c.G962A	p.G321E	.	.	39	13	95	0	.	615
OR1M1	125963	bcgsc.ca	37	19	9204533	9204533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OR1M1	NM_001004456	exon1	c.A613G	p.M205V	.	.	79	14	136	7	.	71
OR2A14	135941	hgsc.bcm.edu	37	7	143826732	143826732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OR2A14	NM_001001659	exon1	c.T527A	p.F176Y	.	.	206	9	318	0	.	90
OR5A2	219981	bcgsc.ca	37	11	59190105	59190105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OR5A2	NM_001001954	exon1	c.A322G	p.M108V	.	.	76	4	121	1	.	68
OSBPL1A	114876	ucsc.edu	37	18	21894307	21894307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OSBPL1A	NM_080597	exon12	c.A875G	p.K292R	.	.	36	4	79	1	.	94
OSBPL6	114880	hgsc.bcm.edu	37	2	179247841	179247841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OSBPL6	NM_001201480	exon18	c.T1787C	p.L596P	.	.	74	3	169	0	.	69
OSCP1	127700	hgsc.bcm.edu;bcgsc.ca	37	1	36889022	36889022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OSCP1	NM_145047	exon5	c.T562C	p.F188L	.	.	57	5	91	0	.	4
PAK1IP1	55003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10702604	10702604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAK1IP1	NM_017906	exon3	c.A250G	p.T84A	.	.	76	17	97	0	.	68
PAK2	5062	hgsc.bcm.edu	37	3	196547362	196547362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAK2	NM_002577	exon13	c.A1274G	p.D425G	.	.	94	4	198	0	.	957
PAPD7	11044	hgsc.bcm.edu	37	5	6743905	6743905	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAPD7	NM_001171805	exon6	c.T447C	p.G149G	.	.	87	4	147	0	.	69
PAPOLA	10914	hgsc.bcm.edu	37	14	97022280	97022280	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAPOLA	NM_032632	exon18	c.A1761G	p.S587S	.	.	113	5	177	0	.	68
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419251	122419251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PARP14	NM_017554	exon6	c.T1850C	p.L617P	.	.	58	4	108	0	.	525
PATL1	219988	hgsc.bcm.edu;bcgsc.ca	37	11	59423450	59423450	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PATL1	NM_152716	exon7	c.A792G	p.A264A	.	.	116	5	189	0	.	1
PCDHGB6	56100	hgsc.bcm.edu;broad.mit.edu	37	5	140790042	140790042	+	Missense_Mutation	SNP	A	A	G	rs185995562	by1000genomes;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_032100	exon1	c.A2273G	p.H758R	.	.	125	5	194	0	A|0.999;T|0.000	.
PDE1C	5137	hgsc.bcm.edu	37	7	32338269	32338269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PDE1C	NM_001191058	exon1	c.A79G	p.T27A	.	.	81	4	106	0	.	94
PDE8B	8622	bcgsc.ca	37	5	76621389	76621389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PDE8B	NM_001029852	exon3	c.A425G	p.D142G	.	.	128	5	243	0	.	90
PEAK1	0	hgsc.bcm.edu	37	15	77473310	77473310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_024776	exon5	c.A959G	p.Y320C	.	.	89	4	155	0	.	.
PEAK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77473962	77473962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_024776	exon5	c.G307C	p.G103R	.	.	124	44	197	0	.	.
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57326944	57326944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PEG3	NM_001146184	exon9	c.C2866A	p.P956T	.	.	119	43	283	0	.	164
PGGT1B	5229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114548112	114548112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PGGT1B	NM_005023	exon9	c.A1121G	p.H374R	.	.	153	52	296	0	.	90
PHF14	9678	bcgsc.ca	37	7	11078415	11078415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PHF14	NM_014660	exon11	c.A2009G	p.N670S	.	.	134	6	169	1	.	538
PHF21A	51317	hgsc.bcm.edu	37	11	45991402	45991402	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PHF21A	NM_016621	exon8	c.T666C	p.P222P	.	.	122	5	182	0	.	92
PHIP	55023	hgsc.bcm.edu;bcgsc.ca	37	6	79692705	79692705	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PHIP	NM_017934	exon23	c.A2667G	p.K889K	.	.	50	4	123	0	.	579
PITPNM3	83394	hgsc.bcm.edu	37	17	6377793	6377793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PITPNM3	NM_031220	exon10	c.T1217G	p.L406R	.	.	115	5	201	0	.	228
PKNOX1	5316	hgsc.bcm.edu	37	21	44424541	44424541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PKNOX1	NM_004571	exon2	c.A50C	p.Q17P	.	.	85	4	117	0	.	153
PLBD1	79887	hgsc.bcm.edu	37	12	14659104	14659104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PLBD1	NM_024829	exon10	c.G1471A	p.D491N	.	.	77	5	160	0	.	90
PLCE1	51196	bcgsc.ca	37	10	95931009	95931009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PLCE1	NM_016341	exon4	c.T1565C	p.L522P	.	.	190	6	221	0	.	229
PLGRKT	55848	hgsc.bcm.edu	37	9	5361763	5361763	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_018465	exon4	c.A207G	p.T69T	.	.	62	4	81	0	.	.
PNP	4860	bcgsc.ca	37	14	20940563	20940563	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PNP	NM_000270	exon2	c.A108G	p.G36G	.	.	109	5	227	2	.	229
PNPT1	87178	hgsc.bcm.edu;bcgsc.ca	37	2	55906857	55906857	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PNPT1	NM_033109	exon8	c.T639C	p.T213T	.	.	59	4	144	0	.	90
POLG	5428	hgsc.bcm.edu;bcgsc.ca	37	15	89864157	89864157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	POLG	NM_002693	exon18	c.A2821G	p.I941V	.	.	50	4	136	0	.	228
POLR2B	5431	hgsc.bcm.edu	37	4	57845168	57845168	+	Missense_Mutation	SNP	A	A	G	rs151277844		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	POLR2B	NM_000938	exon1	c.A17G	p.E6G	.	.	99	4	166	0	A|0.999;G|0.000	92
PPM1B	5495	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	44436409	44436409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PPM1B	NM_001033556	exon3	c.G907A	p.D303N	.	.	25	4	54	0	.	227
PPM1E	22843	hgsc.bcm.edu	37	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248	byfrequency	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PPM1E	NM_014906	exon1	c.G96A	p.E32E	.	.	97	13	161	0	.	291
PPP1R12A	4659	hgsc.bcm.edu	37	12	80226243	80226243	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PPP1R12A	NM_002480	exon4	c.A516G	p.E172E	.	.	91	4	133	0	.	273
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186275693	186275693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRG4	NM_005807	exon7	c.A842G	p.E281G	.	.	86	5	112	0	.	91
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148559822	148559822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRMT10	NM_138364	exon12	c.T2399C	p.L800S	.	.	88	4	186	0	.	91
PRR11	55771	hgsc.bcm.edu	37	17	57262914	57262914	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRR11	NM_018304	exon4	c.A393G	p.E131E	.	.	99	4	177	0	.	92
PSG7	5676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43430131	43430131	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001206650	exon4	c.C671A	p.S224X	.	.	90	43	171	0	.	.
PSMD5	5711	hgsc.bcm.edu;bcgsc.ca	37	9	123589185	123589185	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PSMD5	NM_005047	exon6	c.A672G	p.R224R	.	.	75	4	132	0	.	90
PSME4	23198	hgsc.bcm.edu	37	2	54152693	54152693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PSME4	NM_014614	exon14	c.T1792C	p.S598P	.	.	123	5	226	0	.	275
PSME4	23198	hgsc.bcm.edu	37	2	54159837	54159837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PSME4	NM_014614	exon9	c.T1018C	p.F340L	.	.	79	4	145	0	.	275
PTGFR	5737	hgsc.bcm.edu	37	1	79002111	79002111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	PTGFR_ENST00000370758,NS,carcinoma,+2	PTGFR	NM_001039585	exon4	c.A890G	p.E297G	.	.	73	3	98	0	.	527
PTPRA	5786	hgsc.bcm.edu	37	20	3017865	3017865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PTPRA	NM_002836	exon27	c.A2264G	p.E755G	.	.	87	5	171	0	.	227
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	80887157	80887157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001145026	exon7	c.C947T	p.A316V	.	.	56	17	94	0	.	.
PUS10	150962	hgsc.bcm.edu;broad.mit.edu	37	2	61175205	61175205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PUS10	NM_144709	exon16	c.G1424A	p.R475H	.	.	109	5	208	0	.	291
PUS7L	83448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44148626	44148626	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PUS7L	NM_001098614	exon2	c.C423T	p.A141A	.	.	75	25	119	0	.	91
PVRL2	5819	hgsc.bcm.edu	37	19	45389426	45389426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PVRL2	NM_001042724	exon8	c.A1297G	p.S433G	.	.	82	4	143	0	.	90
PYGM	5837	hgsc.bcm.edu	37	11	64527357	64527357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PYGM	NM_001164716	exon1	c.T14C	p.L5P	.	.	81	4	127	0	.	92
PZP	5858	hgsc.bcm.edu	37	12	9345181	9345181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PZP	NM_002864	exon12	c.A1409G	p.E470G	.	.	134	6	181	0	.	157
RAB37	326624	hgsc.bcm.edu	37	17	72741169	72741169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAB37	NM_001163989	exon8	c.A527G	p.E176G	.	.	87	4	171	0	.	230
RAD51AP1	10635	hgsc.bcm.edu	37	12	4665649	4665649	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAD51AP1	NM_001130862	exon9	c.A903G	p.K301K	.	.	62	4	106	0	.	227
RAPGEF4	11069	hgsc.bcm.edu;bcgsc.ca	37	2	173852991	173852991	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAPGEF4	NM_007023	exon13	c.T1218C	p.I406I	.	.	57	4	74	0	.	274
RAPGEF6	51735	hgsc.bcm.edu	37	5	130834162	130834162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAPGEF6	NM_001164387	exon12	c.T1393C	p.F465L	.	.	87	4	120	0	.	661
RBL2	5934	hgsc.bcm.edu	37	16	53496562	53496562	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RBL2	NM_005611	exon11	c.T1555C	p.L519L	.	.	65	4	181	0	.	841
RBM27	54439	hgsc.bcm.edu	37	5	145613206	145613206	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RBM27	NM_018989	exon7	c.C1044T	p.G348G	.	.	68	17	156	0	.	70
RBM27	54439	hgsc.bcm.edu	37	5	145613209	145613209	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RBM27	NM_018989	exon7	c.A1047T	p.P349P	.	.	71	16	162	0	.	70
RBMXL3	139804	mdanderson.org	37	X	114425196	114425196	+	Missense_Mutation	SNP	G	G	A	rs12399211		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001145346	exon1	c.G1192A	p.D398N	.	.	56	34	58	0	G|0.483;A|0.517	.
RCOR1	23186	hgsc.bcm.edu;bcgsc.ca	37	14	103148307	103148307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RCOR1	NM_015156	exon3	c.A437G	p.E146G	.	.	72	4	109	0	.	91
REST	5978	hgsc.bcm.edu	37	4	57798184	57798184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	REST	NM_001193508	exon4	c.A3160G	p.K1054E	.	.	101	5	189	0	.	232
REXO1	57455	hgsc.bcm.edu;bcgsc.ca	37	19	1827477	1827477	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	REXO1	NM_020695	exon2	c.A1311G	p.P437P	.	.	34	4	60	0	.	90
RFWD2	64326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175958553	175958553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RFWD2	NM_022457	exon16	c.C1792T	p.H598Y	.	.	201	45	225	1	.	659
RGS4	5999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163042190	163042190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RGS4	NM_001102445	exon3	c.A341G	p.K114R	.	.	71	20	93	0	.	652
RHBDD3	25807	hgsc.bcm.edu	37	22	29656351	29656351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RHBDD3	NM_012265	exon6	c.C947A	p.A316E	.	.	84	4	171	0	.	91
RHOH	399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	40245536	40245536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RHOH	NM_004310	exon3	c.G530A	p.R177Q	.	.	105	10	216	0	.	660
RLF	6018	hgsc.bcm.edu	37	1	40656478	40656478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RLF	NM_012421	exon3	c.A427G	p.S143G	.	.	91	4	155	0	.	93
RLF	6018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40705106	40705106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RLF	NM_012421	exon8	c.A4732G	p.S1578G	.	.	42	13	110	0	.	93
RMND5B	64777	hgsc.bcm.edu	37	5	177570698	177570698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RMND5B	NM_022762	exon6	c.T497C	p.L166P	.	.	107	5	157	0	.	227
RNASE7	84659	hgsc.bcm.edu	37	14	21511444	21511444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNASE7	NM_032572	exon2	c.A293G	p.H98R	.	.	69	4	118	0	.	91
RNF121	55298	bcgsc.ca	37	11	71706524	71706524	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNF121	NM_018320	exon8	c.T790G	p.C264G	.	.	172	26	271	10	.	226
RNF216	54476	hgsc.bcm.edu	37	7	5781438	5781438	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNF216	NM_207111	exon4	c.A210G	p.K70K	.	.	89	4	96	0	.	274
RNGTT	8732	hgsc.bcm.edu;bcgsc.ca	37	6	89322527	89322527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNGTT	NM_003800	exon16	c.T1705C	p.S569P	.	.	72	4	208	0	.	91
RNPEPL1	57140	bcgsc.ca	37	2	241517019	241517019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNPEPL1	NM_018226	exon11	c.T1888C	p.S630P	.	.	96	5	328	1	.	154
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55542668	55542668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RP1	NM_006269	exon4	c.T6226A	p.F2076I	.	.	68	24	89	0	.	102
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10464506	10464506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RP1L1	NM_178857	exon4	c.G7102A	p.E2368K	.	.	32	25	96	0	.	139
RPA2	6118	hgsc.bcm.edu	37	1	28233497	28233497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RPA2	NM_002946	exon4	c.A275G	p.Y92C	.	.	69	4	127	0	.	228
RPL37	6167	hgsc.bcm.edu	37	5	40834674	40834674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RPL37	NM_000997	exon2	c.A38G	p.N13S	.	.	76	4	160	0	.	90
RRM1	6240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4142990	4142990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RRM1	NM_001033	exon10	c.A1033T	p.N345Y	.	.	101	42	209	0	.	227
RUFY3	22902	hgsc.bcm.edu	37	4	71668679	71668679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RUFY3	NM_001037442	exon16	c.A1629C	p.Q543H	.	.	59	4	113	0	.	90
RYR1	6261	hgsc.bcm.edu	37	19	38979854	38979854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RYR1	NM_001042723	exon35	c.T5585C	p.I1862T	.	.	75	4	134	0	.	100
RYR3	6263	hgsc.bcm.edu	37	15	33922201	33922201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RYR3	NM_001243996	exon22	c.A2740G	p.T914A	.	.	81	4	125	0	.	520
SBNO1	55206	hgsc.bcm.edu;bcgsc.ca	37	12	123793921	123793921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SBNO1	NM_001167856	exon27	c.A3566G	p.E1189G	.	.	91	5	181	0	.	292
SCIN	85477	hgsc.bcm.edu	37	7	12620702	12620702	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCIN	NM_001112706	exon3	c.T372C	p.S124S	.	.	94	4	103	0	.	24
SCN3A	6328	hgsc.bcm.edu;bcgsc.ca	37	2	166019086	166019086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCN3A	NM_001081676	exon8	c.A947G	p.K316R	.	.	76	4	138	0	.	141
SCO2	9997	hgsc.bcm.edu	37	22	50962276	50962276	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCO2	NM_001169111	exon2	c.T565C	p.L189L	.	.	93	4	180	0	.	226
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	144890960	144890960	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCRIB	NM_015356	exon15	c.G1934A	p.W645X	.	.	52	11	63	0	.	228
SCRN3	79634	hgsc.bcm.edu	37	2	175292593	175292593	+	Missense_Mutation	SNP	G	G	T	rs79038555		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCRN3	NM_024583	exon8	c.G1245T	p.Q415H	.	.	202	10	366	0	.	91
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4091349	4091349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SDK1	NM_152744	exon19	c.G2798A	p.G933E	.	.	199	75	200	0	.	138
SDK2	54549	hgsc.bcm.edu	37	17	71346476	71346476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SDK2	NM_001144952	exon43	c.A5938G	p.M1980V	.	.	90	4	154	0	.	24
SEC14L1	6397	bcgsc.ca	37	17	75190861	75190861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SEC14L1	NM_001204408	exon9	c.T577C	p.S193P	.	.	271	8	422	2	.	92
SEC14L4	284904	hgsc.bcm.edu	37	22	30890136	30890136	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SEC14L4	NM_174977	exon8	c.580+1G>A	.	.	.	91	4	185	0	.	91
SEL1L	6400	hgsc.bcm.edu	37	14	81956767	81956767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SEL1L	NM_005065	exon13	c.A1297G	p.T433A	.	.	94	4	137	0	.	227
SELENBP1	8991	hgsc.bcm.edu	37	1	151337178	151337178	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SELENBP1	NM_001258289	exon12	c.A1386G	p.E462E	.	.	90	4	100	0	.	90
SEMA4C	54910	bcgsc.ca	37	2	97532023	97532023	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SEMA4C	NM_017789	exon3	c.A255G	p.G85G	.	.	91	5	160	1	.	92
SERPINA10	51156	hgsc.bcm.edu	37	14	94752493	94752493	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SERPINA10	NM_001100607	exon4	c.T1095C	p.A365A	.	.	89	4	171	0	.	228
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47155420	47155420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	SETD2,NS,carcinoma,0	SETD2	NM_014159	exon5	c.T4661C	p.V1554A	.	.	83	5	123	0	.	1273
SETD9	133383	bcgsc.ca	37	5	56208934	56208934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_153706	exon3	c.A563G	p.D188G	.	.	87	5	173	1	.	.
SH2D7	646892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78393469	78393469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001101404	exon5	c.C874T	p.P292S	.	.	67	43	115	0	.	.
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49176517	49176517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SHC4	NM_203349	exon4	c.G768T	p.Q256H	.	.	67	6	117	0	.	95
SIPA1L1	26037	bcgsc.ca	37	14	72137921	72137921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SIPA1L1	NM_015556	exon8	c.A2341G	p.R781G	.	.	132	5	251	0	.	156
SIRPB2	284759	bcgsc.ca	37	20	1460674	1460674	+	Missense_Mutation	SNP	A	A	C	rs201033475	byfrequency	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SIRPB2	NM_001122962	exon2	c.T122G	p.V41G	.	.	50	19	82	5	A|0.988;C|0.011	226
SLAMF7	57823	hgsc.bcm.edu;bcgsc.ca	37	1	160719673	160719673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLAMF7	NM_021181	exon3	c.A439G	p.T147A	.	.	95	4	156	0	.	93
SLC25A21	89874	hgsc.bcm.edu	37	14	37283153	37283153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC25A21	NM_030631	exon3	c.A173G	p.D58G	.	.	82	4	115	0	.	91
SLC25A5	292	hgsc.bcm.edu	37	X	118604919	118604919	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC25A5	NM_001152	exon4	c.A795G	p.E265E	.	.	94	4	283	0	.	131
SLC27A3	11000	bcgsc.ca	37	1	153747611	153747611	+	Missense_Mutation	SNP	A	A	G	rs200878053		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC27A3	.	.	.	.	.	.	81	5	126	0	A|0.998;G|0.002	91
SLC30A2	7780	broad.mit.edu	37	1	26369944	26369944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC30A2	NM_001004434	exon4	c.A517G	p.I173V	.	.	173	6	280	0	.	90
SLC30A3	7781	hgsc.bcm.edu;bcgsc.ca	37	2	27481800	27481800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC30A3	NM_003459	exon2	c.T98C	p.L33P	.	.	91	4	134	0	.	90
SLC4A10	57282	bcgsc.ca	37	2	162807221	162807221	+	Missense_Mutation	SNP	T	T	G	rs75945400		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC4A10	NM_001178015	exon19	c.T2404G	p.F802V	.	.	107	24	170	3	.	229
SMNDC1	10285	hgsc.bcm.edu;bcgsc.ca	37	10	112063340	112063340	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SMNDC1	NM_005871	exon2	c.A6G	p.S2S	.	.	69	4	85	0	.	91
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17933019	17933019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SNX13	NM_015132	exon3	c.C164T	p.S55L	.	.	199	41	229	0	.	650
SNX25	83891	hgsc.bcm.edu	37	4	186244833	186244833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SNX25	NM_031953	exon9	c.T1136C	p.V379A	.	.	98	4	200	0	.	273
SP4	6671	hgsc.bcm.edu;bcgsc.ca	37	7	21469063	21469063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SP4	NM_003112	exon3	c.A280G	p.T94A	.	.	104	5	105	0	.	95
SPATA13	221178	hgsc.bcm.edu	37	13	24874603	24874603	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPATA13	NM_001166271	exon12	c.A3648G	p.G1216G	.	.	98	4	161	0	.	229
SPATA4	132851	hgsc.bcm.edu	37	4	177106011	177106011	+	Nonsense_Mutation	SNP	C	C	A	rs201475322		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPATA4	NM_144644	exon6	c.G838T	p.E280X	.	.	123	14	190	0	C|0.999;A|0.001	90
SPATS2	65244	broad.mit.edu	37	12	49919877	49919877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPATS2	NM_023071	exon14	c.T1477C	p.S493P	.	.	142	5	267	1	.	135
SPATS2L	26010	hgsc.bcm.edu;bcgsc.ca	37	2	201334662	201334662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPATS2L	NM_001100423	exon11	c.A983G	p.D328G	.	.	125	6	174	0	.	48
SPIRE1	56907	hgsc.bcm.edu	37	18	12453068	12453068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPIRE1	NM_001128626	exon14	c.A1846G	p.R616G	.	.	91	4	126	0	.	90
SPN	6693	bcgsc.ca	37	16	29675062	29675062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPN	NM_001030288	exon2	c.C13T	p.L5F	.	.	61	4	136	0	.	514
SPTB	6710	hgsc.bcm.edu	37	14	65241871	65241871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPTB	NM_001024858	exon22	c.T4814C	p.L1605P	.	.	87	4	105	0	.	100
ST14	6768	broad.mit.edu	37	11	130066545	130066545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ST14	NM_021978	exon11	c.A1304G	p.Y435C	.	.	129	4	294	0	.	94
ST6GAL2	84620	ucsc.edu	37	2	107446590	107446590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ST6GAL2	NM_032528	exon5	c.T1250C	p.L417P	.	.	47	4	120	0	.	191
ST8SIA4	7903	hgsc.bcm.edu	37	5	100222062	100222062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ST8SIA4	NM_175052	exon3	c.A488G	p.H163R	.	.	95	4	132	0	.	153
STAT6	6778	hgsc.bcm.edu	37	12	57498314	57498314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STAT6	NM_001178079	exon11	c.A1145G	p.E382G	.	.	81	4	141	0	.	849
STAU1	6780	hgsc.bcm.edu;bcgsc.ca	37	20	47740949	47740949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STAU1	NM_017453	exon7	c.A785G	p.K262R	.	.	65	4	112	0	.	230
STK31	56164	hgsc.bcm.edu	37	7	23802460	23802460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STK31	NM_031414	exon11	c.A1334G	p.Q445R	.	.	119	5	164	0	.	338
STMN2	11075	hgsc.bcm.edu	37	8	80553730	80553730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STMN2	NM_007029	exon3	c.A233G	p.D78G	.	.	111	5	149	0	.	515
STON1-GTF2A1L	286749	hgsc.bcm.edu	37	2	48872210	48872210	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STON1-GTF2A1L	NM_001198593	exon7	c.T2454C	p.G818G	.	.	78	4	146	0	.	27
STX5	6811	hgsc.bcm.edu	37	11	62592977	62592977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STX5	NM_003164	exon6	c.T458C	p.L153P	.	.	118	5	182	0	.	154
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21829290	21829311	+	Frame_Shift_Del	DEL	TAATAATTCGGAAAGCATTCTG	TAATAATTCGGAAAGCATTCTG	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	TAATAATTCGGAAAGCATTCTG	TAATAATTCGGAAAGCATTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SUPT16H	NM_007192	exon16	c.1855_1876del	p.619_626del	.	.	94	9	190	0	.	90
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	40853607	40853607	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SYT4	NM_020783	exon2	c.G787T	p.G263X	.	.	131	57	217	0	.	132
TAB1	10454	hgsc.bcm.edu	37	22	39824030	39824030	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TAB1	NM_153497	exon10	c.A1149G	p.A383A	.	.	63	4	91	0	.	522
TBC1D14	57533	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	7006574	7006574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBC1D14	NM_001113361	exon8	c.T1274C	p.L425P	.	.	39	4	79	0	.	92
TBCK	93627	hgsc.bcm.edu;bcgsc.ca	37	4	107154200	107154200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBCK	NM_001163436	exon17	c.T1534C	p.C512R	.	.	76	4	109	0	.	336
TBL1XR1	79718	hgsc.bcm.edu	37	3	176765128	176765128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBL1XR1	NM_024665	exon9	c.A824G	p.N275S	.	.	106	5	226	0	.	187
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	.	.	42	5	91	0	.	91
TDRD12	91646	bcgsc.ca	37	19	33247041	33247041	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001110822	exon7	c.A726G	p.T242T	.	.	151	6	251	1	.	.
TDRD9	122402	hgsc.bcm.edu	37	14	104431724	104431724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TDRD9	NM_153046	exon4	c.A475G	p.S159G	.	.	90	4	126	0	.	70
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123654550	123654550	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001163278	exon18	c.C3118T	p.L1040L	.	.	79	56	325	1	.	.
TENM2	57451	bcgsc.ca	37	5	167674990	167674990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001122679	exon27	c.A7019G	p.D2340G	.	.	156	6	282	3	.	.
TET2	54790	broad.mit.edu;bcgsc.ca	37	4	106157982	106157982	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TET2	NM_001127208	exon3	c.A2883G	p.E961E	.	.	146	5	251	0	.	4618
TET3	200424	bcgsc.ca	37	2	74273965	74273965	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_144993	exon1	c.T516C	p.P172P	.	.	51	6	115	0	.	.
TFRC	7037	bcgsc.ca	37	3	195791265	195791265	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TFRC	NM_001128148	exon11	c.A1233G	p.A411A	.	.	53	4	112	0	.	653
TGM4	7047	hgsc.bcm.edu	37	3	44952888	44952888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TGM4	NM_003241	exon13	c.T1903C	p.S635P	.	.	91	4	147	0	.	91
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154625449	154625449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TLR2	NM_003264	exon3	c.G1390A	p.V464I	.	.	101	44	144	0	.	523
TMC2	117532	hgsc.bcm.edu	37	20	2539363	2539363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMC2	NM_080751	exon3	c.A344G	p.K115R	.	.	94	4	148	0	.	93
TMED6	146456	hgsc.bcm.edu	37	16	69381728	69381728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMED6	NM_144676	exon3	c.A452G	p.E151G	.	.	122	5	381	0	.	91
TMEM126A	84233	hgsc.bcm.edu;bcgsc.ca	37	11	85367380	85367380	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM126A	NM_032273	exon5	c.A423G	p.K141K	.	.	83	4	161	0	.	92
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	128899651	128899651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM132C	NM_001136103	exon2	c.A460G	p.M154V	.	.	51	6	150	0	.	68
TMEM132D	121256	hgsc.bcm.edu	37	12	129694080	129694080	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM132D	NM_133448	exon5	c.T1428C	p.D476D	.	.	73	4	230	0	.	106
TMEM138	51524	hgsc.bcm.edu	37	11	61136089	61136089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM138	NM_016464	exon5	c.T397C	p.F133L	.	.	96	4	184	0	.	90
TMEM145	284339	hgsc.bcm.edu	37	19	42820704	42820704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM145	NM_173633	exon9	c.A718G	p.K240E	.	.	100	4	254	0	.	90
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35853674	35853674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM8B	NM_001042590	exon13	c.G1256T	p.G419V	.	.	182	65	289	0	.	91
TMEM95	339168	hgsc.bcm.edu	37	17	7258602	7258602	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM95	NM_198154	exon1	c.T79C	p.L27L	.	.	68	5	123	0	.	90
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789367	117789367	+	Missense_Mutation	SNP	A	A	G	rs200485169		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMPRSS13	NM_001206790	exon2	c.T208C	p.S70P	.	.	64	9	164	0	.	91
TNIK	23043	hgsc.bcm.edu	37	3	170784050	170784050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TNIK	NM_015028	exon32	c.A3925G	p.T1309A	.	.	94	4	136	0	.	550
TNRC6A	27327	hgsc.bcm.edu	37	16	24834278	24834278	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TNRC6A	NM_014494	exon24	c.T5457C	p.A1819A	.	.	67	4	181	0	.	92
TOPAZ1	375337	hgsc.bcm.edu	37	3	44364606	44364606	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001145030	exon18	c.T4494C	p.Y1498Y	.	.	46	4	71	0	.	.
TPCN1	53373	bcgsc.ca	37	12	113722410	113722410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TPCN1	NM_001143819	exon17	c.T1583C	p.V528A	.	.	79	5	297	2	.	93
TRAF6	7189	hgsc.bcm.edu	37	11	36520043	36520043	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRAF6	NM_004620	exon3	c.T444C	p.L148L	.	.	88	4	125	0	.	660
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141381200	141381200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRAPPC9	NM_031466	exon8	c.C1508T	p.A503V	.	.	65	21	93	0	.	228
TRIML2	205860	broad.mit.edu	37	4	189018248	189018248	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRIML2	NM_173553	exon6	c.A562T	p.R188X	.	.	263	8	504	0	.	90
TRIP11	9321	hgsc.bcm.edu;bcgsc.ca	37	14	92474090	92474090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRIP11	NM_004239	exon10	c.T1421C	p.L474P	.	.	95	4	155	0	.	1400
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2107122	2107122	+	Missense_Mutation	SNP	T	T	G	rs45517131	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TSC2	NM_001114382	exon9	c.T791G	p.L264R	.	.	92	5	251	0	.	1908
TTC7B	145567	bcgsc.ca	37	14	91077132	91077132	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TTC7B	NM_001010854	exon17	c.A1920G	p.R640R	.	.	146	5	223	0	.	92
TTLL2	83887	ucsc.edu;bcgsc.ca	37	6	167738685	167738685	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TTLL2	NM_031949	exon1	c.C24T	p.S8S	.	.	36	4	94	1	.	92
TTN	7273	broad.mit.edu	37	2	179586762	179586762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TTN	NM_001267550	exon78	c.C22628T	p.P7543L	.	.	111	3	185	0	.	636
TTN	7273	hgsc.bcm.edu	37	2	179640606	179640606	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TTN	NM_001267550	exon28	c.A5985G	p.E1995E	.	.	97	4	225	0	.	636
TUBGCP5	114791	hgsc.bcm.edu	37	15	22869927	22869927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TUBGCP5	NM_052903	exon21	c.A2851G	p.K951E	.	.	121	5	153	0	.	91
TUBGCP6	85378	hgsc.bcm.edu	37	22	50656199	50656199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TUBGCP6	NM_020461	exon25	c.G5426A	p.R1809H	.	.	61	4	176	0	.	93
UBQLN1	29979	hgsc.bcm.edu	37	9	86276838	86276838	+	Missense_Mutation	SNP	A	A	G	rs79530639		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UBQLN1	NM_013438	exon11	c.T1634C	p.V545A	.	.	103	5	140	0	.	90
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5528949	5528949	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UBQLN3	NM_017481	exon2	c.G1840C	p.A614P	.	.	70	29	126	0	.	93
UGGT1	56886	bcgsc.ca	37	2	128914876	128914876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UGGT1	NM_020120	exon22	c.A2311G	p.S771G	.	.	101	4	183	0	.	91
UGT2B15	7366	broad.mit.edu	37	4	69513060	69513060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UGT2B15	NM_001076	exon6	c.A1355G	p.D452G	.	.	128	4	228	0	.	46
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34831811	34831811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UHRF1BP1	NM_017754	exon15	c.C3248T	p.A1083V	.	.	61	17	99	0	.	93
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54825124	54825124	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC13C	NM_001080534	exon24	c.T5556A	p.V1852V	.	.	55	18	96	0	.	51
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33495162	33495162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC45B	NM_001267052	exon10	c.C1234G	p.L412V	.	.	121	53	241	0	.	157
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210837964	210837964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC80	NM_032504	exon55	c.G8359A	p.A2787T	.	.	106	42	199	0	.	90
USP31	57478	hgsc.bcm.edu;bcgsc.ca	37	16	23093795	23093795	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	USP31	NM_020718	exon12	c.T1914C	p.P638P	.	.	69	4	186	0	.	663
UTP20	27340	bcgsc.ca	37	12	101693519	101693519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UTP20	NM_014503	exon13	c.T1490C	p.L497S	.	.	66	4	124	0	.	155
VCL	7414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75871688	75871688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	VCL	NM_014000	exon19	c.G2767A	p.V923M	.	.	103	26	155	1	.	93
VPS13C	54832	hgsc.bcm.edu	37	15	62214150	62214150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	VPS13C	NM_020821	exon55	c.T7058C	p.L2353P	.	.	96	4	141	0	.	92
VWA7	80737	hgsc.bcm.edu	37	6	31740763	31740763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_025258	exon7	c.T1055C	p.V352A	.	.	12	5	22	0	.	.
WARS	7453	hgsc.bcm.edu	37	14	100808883	100808883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WARS	NM_004184	exon9	c.A965G	p.D322G	.	.	121	5	180	0	.	153
WDFY3	23001	bcgsc.ca	37	4	85707136	85707136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WDFY3	NM_014991	exon24	c.A4058G	p.K1353R	.	.	53	4	68	0	.	93
WDR33	55339	hgsc.bcm.edu;bcgsc.ca	37	2	128480841	128480841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WDR33	NM_018383	exon12	c.A1277G	p.D426G	.	.	85	4	107	0	.	90
WDR65	149465	hgsc.bcm.edu	37	1	43652435	43652435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WDR65	NM_001195831	exon6	c.T1027C	p.C343R	.	.	86	4	145	0	.	91
WSB1	26118	bcgsc.ca	37	17	25630499	25630499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WSB1	NM_015626	exon3	c.T316C	p.C106R	.	.	108	4	184	0	.	226
WWC3	55841	ucsc.edu	37	X	10085419	10085419	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WWC3	NM_015691	exon11	c.G1320A	p.R440R	.	.	42	4	174	0	.	134
XDH	7498	hgsc.bcm.edu	37	2	31620567	31620567	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	XDH	NM_000379	exon6	c.A462G	p.R154R	.	.	90	4	156	0	.	158
XIRP2	129446	hgsc.bcm.edu;bcgsc.ca	37	2	168099632	168099632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	XIRP2	NM_152381	exon9	c.T1730C	p.I577T	.	.	89	5	191	0	.	104
YEATS2	55689	hgsc.bcm.edu	37	3	183493770	183493770	+	Silent	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	YEATS2	NM_018023	exon18	c.A2436C	p.G812G	.	.	59	9	109	0	.	138
YES1	7525	broad.mit.edu;bcgsc.ca	37	18	746007	746007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	YES1	NM_005433	exon5	c.T515C	p.L172P	.	.	178	6	324	1	.	547
YTHDC2	64848	hgsc.bcm.edu	37	5	112920155	112920155	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	YTHDC2	NM_022828	exon26	c.T3804C	p.P1268P	.	.	98	4	159	0	.	92
ZBTB2	57621	hgsc.bcm.edu	37	6	151686763	151686763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZBTB2	NM_020861	exon3	c.G1438A	p.E480K	.	.	92	5	242	0	.	91
ZBTB3	79842	hgsc.bcm.edu	37	11	62521471	62521471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZBTB3	NM_024784	exon1	c.A64G	p.R22G	.	.	89	4	145	0	.	585
ZDHHC21	340481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14639974	14639974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZDHHC21	NM_178566	exon8	c.A541G	p.R181G	.	.	61	7	76	0	.	226
ZFC3H1	196441	hgsc.bcm.edu	37	12	72004493	72004493	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZFC3H1	NM_144982	exon34	c.T5814C	p.C1938C	.	.	80	4	97	0	.	138
ZFP69	339559	hgsc.bcm.edu;bcgsc.ca	37	1	40961639	40961639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_198494	exon6	c.T1489C	p.C497R	.	.	90	7	105	0	.	.
ZFYVE9	9372	hgsc.bcm.edu	37	1	52705075	52705075	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZFYVE9	NM_007323	exon4	c.T1986C	p.L662L	.	.	90	4	137	0	.	230
ZNF131	7690	hgsc.bcm.edu	37	5	43161821	43161821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF131	NM_003432	exon6	c.A740G	p.K247R	.	.	100	4	183	0	.	90
ZNF143	7702	hgsc.bcm.edu;bcgsc.ca	37	11	9546829	9546829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF143	NM_003442	exon15	c.T1729C	p.S577P	.	.	83	5	155	0	.	90
ZNF271	10778	bcgsc.ca	37	18	32890026	32890026	+	RNA	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF271	.	.	.	.	.	.	83	5	113	0	.	90
ZNF343	79175	hgsc.bcm.edu;bcgsc.ca	37	20	2465247	2465247	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF343	NM_024325	exon6	c.T360C	p.C120C	.	.	81	4	101	0	.	92
ZNF366	167465	hgsc.bcm.edu	37	5	71756449	71756449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF366	NM_152625	exon2	c.A875G	p.Q292R	.	.	98	4	146	0	.	91
ZNF385D	79750	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	21606170	21606170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF385D	NM_024697	exon3	c.C172T	p.P58S	.	.	43	4	82	0	.	156
ZNF439	90594	hgsc.bcm.edu	37	19	11978999	11978999	+	Missense_Mutation	SNP	A	A	G	rs147858709	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ZNF439,upper_leg,malignant_melanoma,0	ZNF439	NM_152262	exon3	c.A1115G	p.H372R	.	.	46	3	65	0	.	91
ZNF469	84627	hgsc.bcm.edu	37	16	88505541	88505541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001127464	exon2	c.A11579G	p.K3860R	.	.	57	4	192	0	.	.
ZNF469	84627	mdanderson.org	37	16	88498758	88498758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001127464	exon2	c.T4796C	p.L1599P	.	.	14	3	42	0	.	.
ZNF479	90827	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	57188564	57188564	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF479	NM_033273	exon5	c.A558T	p.K186N	.	.	335	89	339	0	.	72
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71592804	71592804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF638	NM_014497	exon6	c.G1963T	p.V655L	.	.	118	47	198	0	.	94
ZNF681	148213	hgsc.bcm.edu	37	19	23927409	23927409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_138286	exon4	c.T943C	p.C315R	.	.	82	4	121	0	.	.
ZNF81	347344	hgsc.bcm.edu;bcgsc.ca	37	X	47775710	47775710	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF81	NM_007137	exon5	c.T1665C	p.V555V	.	.	86	4	211	0	.	130
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175497	57175497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF835	NM_001005850	exon2	c.C1070A	p.T357N	.	.	74	44	138	0	.	72
ZSCAN22	342945	hgsc.bcm.edu	37	19	58846297	58846297	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZSCAN22	NM_181846	exon2	c.T129C	p.A43A	.	.	93	4	131	0	.	91
SMPD1	6609	hgsc.bcm.edu	37	11	6411941	6411942	+	Missense_Mutation	DNP	CG	CG	GC	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	.	.	.	p.A38G	.	.	.	.	.	.	.	
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	50367608	50367609	+	Splice_Site	DNP	CC	CC	AT	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	.	.	.	.	.	.	.	.	.	.	.	
