Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADACL3	126767	bcgsc.ca	37	1	12776346	12776346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AADACL3	NM_001103169	exon1	c.G3T	p.M1I	.	.	601	20	448	0	.	22
ABCA1	19	hgsc.bcm.edu	37	9	107581925	107581925	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCA1	NM_005502	exon22	c.T3183C	p.A1061A	.	.	132	3	147	0	.	1016
ABCA6	23460	hgsc.bcm.edu	37	17	67092459	67092459	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCA6	NM_080284	exon25	c.C3330T	p.V1110V	.	.	104	3	64	0	.	159
ABCB11	8647	hgsc.bcm.edu;bcgsc.ca	37	2	169874628	169874628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCB11	NM_003742	exon2	c.A8G	p.D3G	.	.	82	3	50	0	.	139
ABCB7	22	hgsc.bcm.edu;broad.mit.edu	37	X	74282215	74282215	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCB7	NM_004299	exon14	c.1886delC	p.P629fs	.	.	166	13	126	0	.	131
ABCB9	23457	hgsc.bcm.edu;broad.mit.edu	37	12	123416813	123416813	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCB9	NM_019625	exon11	c.1966delG	p.A656fs	.	.	143	10	122	0	.	90
ABCC10	89845	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	43413441	43413441	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC10	NM_001198934	exon15	c.C3135A	p.I1045I	.	.	253	102	258	0	.	96
ABCC6	368	hgsc.bcm.edu;broad.mit.edu	37	16	16292011	16292011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC6	NM_001171	exon10	c.1205delA	p.K402fs	.	.	156	12	151	0	.	93
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu	37	11	17449417	17449417	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC8	NM_000352	exon15	c.2113delC	p.R705fs	.	.	210	13	176	0	.	91
ABCC9	10060	hgsc.bcm.edu	37	12	21960279	21960279	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC9	NM_020297	exon37	c.4449+1G>A	.	.	.	99	3	96	0	.	96
ABCG4	64137	hgsc.bcm.edu	37	11	119028987	119028987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCG4	NM_022169	exon10	c.T1112C	p.L371P	.	.	174	6	117	0	.	92
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu	37	2	44047175	44047175	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCG5	NM_022436	exon11	c.1528delC	p.H510fs	.	.	153	10	149	0	.	92
ABI3BP	25890	hgsc.bcm.edu;broad.mit.edu	37	3	100585744	100585744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABI3BP	NM_015429	exon10	c.988delA	p.I330fs	.	.	148	11	138	0	.	138
ACAN	176	hgsc.bcm.edu;broad.mit.edu	37	15	89398305	89398305	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACAN	NM_001135	exon12	c.2489delC	p.S830fs	.	.	185	12	129	0	.	25
ACIN1	22985	hgsc.bcm.edu	37	14	23548793	23548793	+	Missense_Mutation	SNP	C	C	T	rs80007670	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACIN1	NM_001164814	exon6	c.G1925A	p.R642H	.	.	251	23	222	0	C|0.994;T|0.006	156
ACOT7	11332	bcgsc.ca	37	1	6445647	6445647	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACOT7	NM_181864	exon1	c.80delG	p.G27fs	.	.	39	4	90	0	.	514
ACOT7	11332	broad.mit.edu;bcgsc.ca	37	1	6409808	6409808	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACOT7	NM_007274	exon3	c.261+1G>-	.	.	.	56	7	79	0	.	514
ACSBG2	81616	hgsc.bcm.edu;broad.mit.edu	37	19	6183239	6183239	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACSBG2	NM_030924	exon10	c.1278delG	p.S426fs	.	.	175	11	141	0	.	23
ACSF2	80221	hgsc.bcm.edu	37	17	48541615	48541615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACSF2	NM_025149	exon10	c.T1175C	p.I392T	.	.	131	3	93	0	.	68
ACTN1	87	hgsc.bcm.edu;broad.mit.edu	37	14	69345708	69345708	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACTN1	NM_001102	exon19	c.2359delC	p.Q787fs	.	.	176	11	148	0	.	514
ACTR6	64431	hgsc.bcm.edu;broad.mit.edu	37	12	100599500	100599500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACTR6	NM_022496	exon3	c.233delT	p.L78fs	.	.	176	13	110	0	.	91
ACTR8	93973	hgsc.bcm.edu;broad.mit.edu	37	3	53902877	53902877	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACTR8	NM_022899	exon13	c.1744delC	p.R582fs	.	.	169	10	130	0	.	91
ACVR1B	91	hgsc.bcm.edu	37	12	52385707	52385707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACVR1B	NM_020328	exon9	c.A1445G	p.E482G	.	.	152	4	140	0	.	1015
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42854589	42854589	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAM11	NM_002390	exon21	c.G1737C	p.G579G	.	.	69	19	68	0	.	227
ADAM33	80332	hgsc.bcm.edu;broad.mit.edu	37	20	3650236	3650236	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAM33	NM_025220	exon20	c.2289delC	p.P763fs	.	.	164	10	120	0	.	291
ADAM7	8756	bcgsc.ca	37	8	24349440	24349440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAM7	NM_003817	exon14	c.A1381G	p.R461G	.	.	70	4	83	1	.	230
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu	37	10	72496514	72496514	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS14	NM_139155	exon10	c.1573delC	p.P525fs	.	.	149	10	153	0	.	232
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu	37	21	28210011	28210011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS1	NM_006988	exon9	c.2791delA	p.R931fs	.	.	206	14	265	0	.	272
ADAMTS20	80070	hgsc.bcm.edu	37	12	43822261	43822261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS20	NM_025003	exon26	c.A3728G	p.E1243G	.	.	164	3	153	0	.	795
ADAMTS8	11095	hgsc.bcm.edu;broad.mit.edu	37	11	130297563	130297563	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS8	NM_007037	exon1	c.619delG	p.A207fs	.	.	167	10	85	0	.	226
ADAMTS9	56999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	64536638	64536638	+	Missense_Mutation	SNP	C	C	T	rs140575639		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS9	NM_182920	exon31	c.G4799A	p.R1600Q	.	.	225	72	143	0	C|1.000;T|0.000	230
ADAMTSL3	57188	hgsc.bcm.edu;bcgsc.ca	37	15	84539614	84539614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTSL3	NM_207517	exon9	c.T863C	p.V288A	.	.	32	4	40	0	.	1153
ADAP1	11033	hgsc.bcm.edu;broad.mit.edu	37	7	939058	939058	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAP1	NM_006869	exon9	c.865delC	p.L289fs	.	.	256	16	204	0	.	91
ADAR	103	hgsc.bcm.edu;broad.mit.edu	37	1	154561054	154561054	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAR	NM_001111	exon10	c.2858delA	p.K953fs	.	.	156	10	59	0	.	157
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu	37	19	41220518	41220518	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADCK4	NM_001142555	exon2	c.20delG	p.G7fs	.	.	171	12	156	0	.	319
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu	37	1	167806547	167806547	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADCY10	NM_018417	exon22	c.3017delA	p.K1006fs	.	.	182	11	99	0	.	493
ADD3	120	hgsc.bcm.edu	37	10	111883900	111883900	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADD3	NM_001121	exon10	c.T1269C	p.S423S	.	.	100	3	125	0	.	157
ADGB	79747	hgsc.bcm.edu;bcgsc.ca	37	6	147049711	147049711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_024694	exon20	c.A2354G	p.E785G	.	.	94	5	88	0	.	.
ADHFE1	137872	hgsc.bcm.edu;broad.mit.edu	37	8	67359569	67359569	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADHFE1	NM_144650	exon7	c.621delA	p.V207fs	.	.	154	10	140	0	.	290
ADORA1	134	hgsc.bcm.edu;broad.mit.edu	37	1	203134406	203134406	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADORA1	NM_001048230	exon3	c.359delC	p.T120fs	.	.	146	10	65	0	.	153
ADORA2B	136	hgsc.bcm.edu	37	17	15878112	15878112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADORA2B	NM_000676	exon2	c.A455C	p.N152T	.	.	270	17	277	0	.	228
ADRA1B	147	bcgsc.ca	37	5	159344454	159344454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADRA1B	NM_000679	exon1	c.T542C	p.L181P	.	.	210	6	184	0	.	522
ADRM1	11047	hgsc.bcm.edu	37	20	60883783	60883783	+	Missense_Mutation	SNP	A	A	C	rs36107815	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADRM1	NM_175573	exon10	c.A1190C	p.K397T	.	.	282	41	234	0	A|0.991;C|0.009	90
ADRM1	11047	hgsc.bcm.edu;broad.mit.edu	37	20	60882434	60882434	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADRM1	NM_175573	exon6	c.549delG	p.L183fs	.	.	162	10	117	0	.	90
AFF3	3899	hgsc.bcm.edu;broad.mit.edu	37	2	100170975	100170975	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AFF3	NM_001025108	exon23	c.3432delC	p.P1144fs	.	.	104	10	72	0	.	230
AGAP1	116987	hgsc.bcm.edu	37	2	236761419	236761419	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGAP1	NM_001244888	exon10	c.G1140C	p.G380G	.	.	384	16	310	0	.	93
AGFG1	3267	hgsc.bcm.edu;broad.mit.edu	37	2	228389615	228389615	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGFG1	NM_004504	exon5	c.678delT	p.H226fs	.	.	216	13	176	0	.	228
AGO4	192670	hgsc.bcm.edu	37	1	36291638	36291638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_017629	exon6	c.T737C	p.V246A	.	.	118	4	93	0	.	.
AGPAT9	84803	hgsc.bcm.edu;broad.mit.edu	37	4	84465717	84465717	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGPAT9	NM_001256421	exon3	c.170delC	p.T57fs	.	.	166	11	119	0	.	91
AGRN	375790	bcgsc.ca	37	1	986127	986127	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGRN	NM_198576	exon30	c.5163delG	p.L1721fs	.	.	53	6	83	0	.	136
AGRN	375790	hgsc.bcm.edu;broad.mit.edu	37	1	987127	987127	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGRN	NM_198576	exon33	c.5583delG	p.A1861fs	.	.	152	12	234	0	.	136
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu	37	9	88204546	88204546	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGTPBP1	NM_015239	exon20	c.2499delT	p.F833fs	.	.	142	10	95	0	.	158
AGTR1	185	hgsc.bcm.edu;broad.mit.edu	37	3	148459417	148459417	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGTR1	NM_031850	exon4	c.700delA	p.K234fs	.	.	164	11	137	0	.	90
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu	37	1	27876439	27876439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AHDC1	NM_001029882	exon6	c.2188delG	p.E730fs	.	.	251	18	239	0	.	90
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	105418939	105418939	+	Missense_Mutation	SNP	G	G	A	rs137934113	by1000genomes	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AHNAK2	NM_138420	exon7	c.C2849T	p.A950V	.	.	301	104	194	0	G|0.998;A|0.002	47
AHSA1	10598	hgsc.bcm.edu;broad.mit.edu	37	14	77929054	77929054	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AHSA1	NM_012111	exon4	c.424delA	p.K142fs	.	.	157	10	121	0	.	226
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21328152	21328152	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AIFM3	NM_001146288	exon4	c.G369T	p.V123V	.	.	112	34	63	0	.	280
AIM1	202	hgsc.bcm.edu;broad.mit.edu	37	6	106967727	106967727	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AIM1	NM_001624	exon2	c.1420delG	p.G474fs	.	.	184	11	136	0	.	139
AIRE	326	hgsc.bcm.edu;broad.mit.edu	37	21	45707420	45707420	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AIRE	NM_000383	exon4	c.484delC	p.P162fs	.	.	264	17	353	0	.	91
AK7	122481	hgsc.bcm.edu;broad.mit.edu	37	14	96916175	96916175	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AK7	NM_152327	exon9	c.907delA	p.K303fs	.	.	158	13	92	0	.	228
AK7	122481	hgsc.bcm.edu;broad.mit.edu	37	14	96937927	96937927	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AK7	NM_152327	exon13	c.1470delA	p.A490fs	.	.	163	13	109	0	.	228
AKAP12	9590	hgsc.bcm.edu	37	6	151674116	151674116	+	Missense_Mutation	SNP	T	T	G	rs200691212		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AKAP12	NM_005100	exon4	c.T4590G	p.I1530M	.	.	67	0	64	0	.	293
AKAP13	11214	hgsc.bcm.edu	37	15	86207943	86207943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AKAP13	NM_006738	exon13	c.A4961G	p.D1654G	.	.	94	4	81	0	.	258
AKAP3	10566	bcgsc.ca	37	12	4736678	4736678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AKAP3	NM_006422	exon4	c.A1390G	p.T464A	.	.	205	6	182	0	.	292
AKT1	207	hgsc.bcm.edu	37	14	105246536	105246536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AKT1	NM_005163	exon3	c.T64C	p.W22R	.	.	153	5	127	0	.	9189
ALDH3B1	221	bcgsc.ca	37	11	67786067	67786067	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	154	12	95	0	.	.
ALDH3B1	221	bcgsc.ca	37	11	67789293	67789293	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	339	5	281	0	.	.
ALDH3B2	222	bcgsc.ca	37	11	67430763	67430763	+	Missense_Mutation	SNP	G	G	C	rs200562460	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALDH3B2	NM_001031615	exon10	c.C1081G	p.H361D	.	.	301	10	216	0	G|0.999;A|0.000	226
ALDH3B2	222	bcgsc.ca	37	11	67432799	67432799	+	Silent	SNP	G	G	A	rs80147122	bycluster;by1000genomes	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALDH3B2	NM_001031615	exon7	c.C663T	p.R221R	.	.	617	46	323	2	.	226
ALG10B	144245	hgsc.bcm.edu;broad.mit.edu	37	12	38714025	38714025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALG10B	NM_001013620	exon3	c.432delT	p.Y144fs	.	.	411	25	322	0	.	93
ALG11	440138	hgsc.bcm.edu	37	13	52602568	52602568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALG11	NM_001004127	exon4	c.A1321G	p.S441G	.	.	99	3	115	0	.	46
ALG8	79053	hgsc.bcm.edu	37	11	77812229	77812229	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALG8	NM_024079	exon13	c.T1362C	p.P454P	.	.	94	3	58	0	.	93
ALMS1	7840	hgsc.bcm.edu	37	2	73653590	73653590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALMS1	NM_015120	exon6	c.A1247G	p.Q416R	.	.	158	4	131	0	.	142
ALPK3	57538	hgsc.bcm.edu	37	15	85400767	85400767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALPK3	NM_020778	exon6	c.A3404G	p.E1135G	.	.	98	3	96	0	.	337
AMDHD2	51005	hgsc.bcm.edu;broad.mit.edu	37	16	2580366	2580366	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AMDHD2	NM_001145815	exon11	c.1391delC	p.S464fs	.	.	160	10	137	0	.	155
AMIGO2	347902	hgsc.bcm.edu;broad.mit.edu	37	12	47471280	47471280	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AMIGO2	NM_181847	exon2	c.1506delG	p.G502fs	.	.	175	11	135	0	.	92
AMN	81693	hgsc.bcm.edu;broad.mit.edu	37	14	103390126	103390126	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AMN	NM_030943	exon2	c.122delC	p.T41fs	.	.	152	11	105	0	.	90
ANGPT1	284	hgsc.bcm.edu	37	8	108348381	108348381	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANGPT1	NM_001199859	exon3	c.572delA	p.N191fs	.	.	177	12	107	0	.	521
ANGPT2	285	hgsc.bcm.edu	37	8	6389963	6389963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANGPT2	NM_001118887	exon2	c.A334G	p.I112V	.	.	123	2	203	0	.	91
ANKEF1	63926	hgsc.bcm.edu	37	20	10032309	10032309	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_022096	exon8	c.1644-2A>G	.	.	.	99	3	87	0	.	.
ANKFN1	162282	hgsc.bcm.edu	37	17	54428175	54428175	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKFN1	NM_153228	exon4	c.T246C	p.C82C	.	.	107	4	102	0	.	136
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu	37	17	4076695	4076695	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKFY1	NM_001257999	exon21	c.3094delG	p.V1032fs	.	.	152	11	150	0	.	93
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu	37	5	139905676	139905676	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKHD1	NM_017747	exon26	c.4588delA	p.K1530fs	.	.	139	10	112	0	.	185
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu	37	4	73985933	73985933	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD17	NM_032217	exon21	c.3971delT	p.L1324X	.	.	163	10	145	0	.	234
ANKRD20A2	441430	hgsc.bcm.edu	37	9	42380200	42380200	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001012421	exon6	c.787delA	p.K263fs	.	.	156	10	132	0	.	.
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu	37	10	37505286	37505286	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD30A	NM_052997	exon32	c.2879delA	p.Q960fs	.	.	366	25	279	0	.	161
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu	37	10	37508625	37508625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD30A	NM_052997	exon34	c.3817delA	p.K1273fs	.	.	202	12	137	0	.	161
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu	37	18	14848892	14848892	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD30B	NM_001145029	exon34	c.3002delA	p.Q1001fs	.	.	459	32	294	0	.	24
ANKRD32	84250	hgsc.bcm.edu	37	5	94030556	94030556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD32	NM_032290	exon21	c.A2716G	p.R906G	.	.	97	2	114	0	.	92
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu	37	5	93989080	93989080	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD32	NM_032290	exon8	c.986delA	p.E329fs	.	.	217	16	134	0	.	92
ANKRD34C	390616	hgsc.bcm.edu	37	15	79586088	79586088	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001146341	exon2	c.A462G	p.T154T	.	.	124	3	110	0	.	.
ANKRD42	338699	hgsc.bcm.edu;broad.mit.edu	37	11	82938845	82938845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD42	NM_182603	exon7	c.760delA	p.K254fs	.	.	153	11	66	0	.	91
ANKRD66	100287718	hgsc.bcm.edu	37	6	46726514	46726514	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001162435	exon5	c.T612C	p.P204P	.	.	101	5	41	0	.	.
ANKS1B	56899	hgsc.bcm.edu	37	12	100173672	100173672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152788	exon6	c.T824C	p.L275P	.	.	167	2	133	0	.	.
ANKS1B	56899	hgsc.bcm.edu;bcgsc.ca	37	12	99129364	99129364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152788	exon26	c.A3721G	p.T1241A	.	.	67	4	64	0	.	.
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu	37	12	100166806	100166806	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152788	exon8	c.1022delA	p.K341fs	.	.	236	15	212	0	.	.
ANLN	54443	hgsc.bcm.edu	37	7	36447349	36447349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANLN	NM_018685	exon5	c.A880T	p.T294S	.	.	88	1	43	0	.	517
ANLN	54443	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	36445866	36445866	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANLN	NM_018685	exon4	c.T564G	p.L188L	.	.	138	44	117	0	.	517
ANO1	55107	hgsc.bcm.edu;broad.mit.edu	37	11	70017033	70017033	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANO1	NM_018043	exon22	c.2238delC	p.F746fs	.	.	247	15	135	0	.	47
ANO2	57101	hgsc.bcm.edu;broad.mit.edu	37	12	5721863	5721863	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANO2	NM_020373	exon20	c.2046delG	p.G682fs	.	.	167	11	114	0	.	139
ANO6	196527	hgsc.bcm.edu	37	12	45771870	45771870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANO6	NM_001204803	exon11	c.T1202C	p.V401A	.	.	94	4	80	0	.	516
ANXA13	312	hgsc.bcm.edu;broad.mit.edu	37	8	124748069	124748069	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANXA13	NM_001003954	exon2	c.64delG	p.D22fs	.	.	144	11	149	0	.	93
ANXA8	653145	hgsc.bcm.edu	37	10	47169805	47169805	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANXA8	NM_001271702	exon2	c.94delA	p.K32fs	.	.	20	10	5	0	.	446
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu	37	14	24032654	24032654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AP1G2	NM_003917	exon14	c.1345delG	p.A449fs	.	.	249	15	165	0	.	45
AP4E1	23431	hgsc.bcm.edu;bcgsc.ca	37	15	51285814	51285814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AP4E1	NM_007347	exon17	c.A2338G	p.I780V	.	.	85	3	75	0	.	90
AP4M1	9179	hgsc.bcm.edu;broad.mit.edu	37	7	99701731	99701731	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AP4M1	NM_004722	exon7	c.560delT	p.V187fs	.	.	171	11	82	0	.	90
APAF1	317	hgsc.bcm.edu	37	12	99060128	99060128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APAF1	NM_181868	exon9	c.A1355G	p.Q452R	.	.	99	4	75	0	.	229
APC	324	hgsc.bcm.edu;broad.mit.edu	37	5	112164604	112164604	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APC	NM_001127510	exon15	c.1678delA	p.K560fs	.	.	241	16	204	0	.	12026
APC	324	hgsc.bcm.edu;broad.mit.edu	37	5	112176345	112176345	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APC	NM_001127510	exon17	c.5054delA	p.E1685fs	.	.	114	11	104	0	.	12026
APOB	338	hgsc.bcm.edu	37	2	21263838	21263838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APOB	NM_000384	exon4	c.T355C	p.S119P	.	.	139	5	109	0	.	175
APP	351	hgsc.bcm.edu	37	21	27354754	27354754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APP	NM_000484	exon9	c.A1127G	p.D376G	.	.	94	4	91	0	.	91
AQR	9716	hgsc.bcm.edu;broad.mit.edu	37	15	35182501	35182501	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AQR	NM_014691	exon24	c.2596delA	p.I866fs	.	.	152	10	150	0	.	135
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu	37	15	32929175	32929176	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGAP11A	NM_014783	exon12	c.2201_2202del	p.734_734del	.	.	64	11	47	0	.	292
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu	37	11	110582936	110582936	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGAP20	NM_020809	exon2	c.19delC	p.Q7fs	.	.	167	11	77	0	.	230
ARHGEF11	9826	bcgsc.ca	37	1	156907082	156907082	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF11	NM_198236	exon39	c.C4399G	p.H1467D	.	.	527	14	289	0	.	233
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu	37	11	120346091	120346091	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF12	NM_015313	exon33	c.3152delA	p.Q1051fs	.	.	229	14	126	0	.	661
ARHGEF26	26084	hgsc.bcm.edu;broad.mit.edu	37	3	153847453	153847453	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF26	NM_001251962	exon4	c.1214delA	p.E405fs	.	.	235	17	186	0	.	47
ARHGEF33	100271715	hgsc.bcm.edu;broad.mit.edu	37	2	39186992	39186992	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF33	NM_001145451	exon14	c.1546delC	p.P516fs	.	.	268	16	208	0	.	46
ARHGEF35	445328	hgsc.bcm.edu;broad.mit.edu	37	7	143884040	143884040	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001003702	exon2	c.1437delA	p.K479fs	.	.	202	14	103	0	.	.
ARHGEF7	8874	hgsc.bcm.edu	37	13	111919988	111919988	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF7	NM_001113511	exon10	c.T1107C	p.P369P	.	.	96	4	90	0	.	232
ARID2	196528	hgsc.bcm.edu;broad.mit.edu	37	12	46243493	46243493	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARID2	NM_152641	exon14	c.1846delC	p.P616fs	.	.	183	11	177	0	.	100
ARID3C	138715	hgsc.bcm.edu	37	9	34625744	34625744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARID3C	NM_001017363	exon2	c.386delA	p.K129fs	.	.	163	10	144	0	.	91
ARL2BP	23568	hgsc.bcm.edu;broad.mit.edu	37	16	57282542	57282542	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARL2BP	NM_012106	exon3	c.194delT	p.I65fs	.	.	166	10	106	0	.	90
ARL5A	26225	hgsc.bcm.edu	37	2	152668893	152668893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARL5A	NM_012097	exon4	c.T317C	p.L106P	.	.	144	4	84	0	.	227
ARMC8	25852	hgsc.bcm.edu;broad.mit.edu	37	3	137982594	137982594	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARMC8	NM_015396	exon14	c.1106delA	p.E369fs	.	.	213	13	157	0	.	90
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu	37	2	232123766	232123766	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARMC9	NM_025139	exon11	c.977delT	p.I326fs	.	.	186	13	159	0	.	91
ARNT	405	hgsc.bcm.edu;broad.mit.edu	37	1	150789283	150789283	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARNT	NM_001668	exon18	c.1783delC	p.R595fs	.	.	214	14	123	0	.	1085
ARSJ	79642	hgsc.bcm.edu;broad.mit.edu	37	4	114899693	114899693	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARSJ	NM_024590	exon1	c.298delA	p.T100fs	.	.	156	10	177	0	.	91
ART3	419	hgsc.bcm.edu	37	4	77003227	77003227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ART3	NM_001130017	exon3	c.A320G	p.E107G	.	.	79	3	52	0	.	92
ARVCF	421	hgsc.bcm.edu;bcgsc.ca	37	22	19959474	19959474	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARVCF	NM_001670	exon18	c.C2716A	p.R906R	.	.	88	6	47	0	.	91
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu	37	6	101095146	101095146	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASCC3	NM_006828	exon21	c.3434delA	p.K1145fs	.	.	189	15	180	0	.	96
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu	37	1	155408163	155408163	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASH1L	NM_018489	exon5	c.5783delA	p.K1928fs	.	.	166	12	84	0	.	234
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu	37	1	155450361	155450361	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASH1L	NM_018489	exon3	c.2300delC	p.P767fs	.	.	285	17	142	0	.	234
ASNSD1	54529	bcgsc.ca	37	2	190535226	190535226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASNSD1	NM_019048	exon6	c.A1706G	p.K569R	.	.	173	6	145	0	.	93
ASPA	443	bcgsc.ca	37	17	3384898	3384898	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASPA	NM_000049	exon2	c.238delA	p.K80fs	.	.	59	6	68	0	.	90
ASPSCR1	79058	bcgsc.ca	37	17	79954545	79954545	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASPSCR1	NM_001251888	exon7	c.G756A	p.L252L	.	.	189	9	118	0	.	877
ASTE1	28990	hgsc.bcm.edu;broad.mit.edu	37	3	130743653	130743653	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASTE1	NM_014065	exon3	c.498delT	p.F166fs	.	.	177	11	122	0	.	90
ASUN	55726	hgsc.bcm.edu;broad.mit.edu	37	12	27067353	27067353	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_018164	exon12	c.1407delT	p.F469fs	.	.	174	12	131	0	.	.
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu	37	2	24087705	24087705	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATAD2B	NM_001242338	exon11	c.1278delT	p.F426fs	.	.	163	13	108	0	.	68
ATAD3A	55210	hgsc.bcm.edu;broad.mit.edu	37	1	1463179	1463179	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATAD3A	NM_018188	exon14	c.1586delG	p.R529fs	.	.	167	10	219	0	.	91
ATF3	467	hgsc.bcm.edu;broad.mit.edu	37	1	212788594	212788594	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATF3	NM_001674	exon2	c.231delA	p.T77fs	.	.	165	11	79	0	.	658
ATF7IP2	80063	hgsc.bcm.edu	37	16	10524659	10524659	+	Missense_Mutation	SNP	C	C	G	rs75627261		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATF7IP2	NM_024997	exon3	c.C182G	p.T61R	.	.	159	8	155	0	.	186
ATG4C	84938	hgsc.bcm.edu;broad.mit.edu	37	1	63284957	63284957	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATG4C	NM_178221	exon5	c.676delA	p.K226fs	.	.	177	11	159	0	.	91
ATN1	1822	hgsc.bcm.edu	37	12	7050600	7050600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATN1	NM_001007026	exon9	c.A3422G	p.Q1141R	.	.	81	4	78	0	.	139
ATP12A	479	hgsc.bcm.edu;broad.mit.edu	37	13	25280558	25280558	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP12A	NM_001185085	exon15	c.2144delC	p.S715fs	.	.	190	12	227	0	.	137
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu	37	1	17312998	17312998	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP13A2	NM_022089	exon28	c.3365delG	p.G1122fs	.	.	171	11	166	0	.	93
ATP13A5	344905	hgsc.bcm.edu	37	3	193029641	193029641	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP13A5	NM_198505	exon20	c.A2409G	p.Q803Q	.	.	98	4	80	0	.	144
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu	37	3	193002803	193002803	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP13A5	NM_198505	exon27	c.3126delT	p.F1042fs	.	.	193	12	154	0	.	144
ATP1A4	480	bcgsc.ca	37	1	160156119	160156119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP1A4	NM_144699	exon21	c.A3023G	p.D1008G	.	.	202	6	122	0	.	94
ATP1B4	23439	hgsc.bcm.edu;broad.mit.edu	37	X	119509268	119509268	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP1B4	NM_001142447	exon5	c.604delC	p.P202fs	.	.	170	13	139	0	.	131
ATP2A3	489	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	3854948	3854948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP2A3	NM_174956	exon4	c.C251G	p.T84S	.	.	173	103	222	0	.	156
ATP5A1	498	hgsc.bcm.edu;broad.mit.edu	37	18	43666170	43666170	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP5A1	NM_004046	exon10	c.1338delT	p.F446fs	.	.	209	13	141	0	.	90
ATP6V0A1	535	hgsc.bcm.edu	37	17	40635054	40635054	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP6V0A1	NM_001130021	exon9	c.717-2A>G	.	.	.	80	4	67	0	.	91
ATP6V1A	523	hgsc.bcm.edu	37	3	113514007	113514007	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP6V1A	NM_001690	exon10	c.T1182C	p.C394C	.	.	90	3	75	0	.	93
ATP8	0	bcgsc.ca	37	MT	8430	8430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	ENST00000361851	exon1	c.T65C	p.L22P	.	.	7	6	69	0	.	.
ATP8A2	51761	bcgsc.ca	37	13	26129201	26129201	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP8A2	NM_016529	exon13	c.1258delG	p.G420fs	.	.	49	5	73	0	.	138
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu	37	20	50307291	50307291	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP9A	NM_006045	exon8	c.710delG	p.G237fs	.	.	156	11	120	0	.	94
ATRNL1	26033	bcgsc.ca	37	10	117607387	117607387	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATRNL1	NM_207303	exon28	c.3904-1G>-	.	.	.	54	5	99	0	.	96
AURKA	6790	broad.mit.edu;bcgsc.ca	37	20	54959341	54959341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AURKA	NM_198437	exon4	c.359delA	p.N120fs	.	.	68	7	68	0	.	1601
AXDND1	126859	hgsc.bcm.edu	37	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	.	.	254	11	193	0	G|1.000;|0.000	93
AXL	558	hgsc.bcm.edu;broad.mit.edu	37	19	41725374	41725374	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AXL	NM_021913	exon1	c.77delC	p.A26fs	.	.	223	14	285	0	.	1403
B3GALT4	8705	hgsc.bcm.edu;broad.mit.edu	37	6	33245843	33245843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	B3GALT4	NM_003782	exon1	c.647delT	p.V216fs	.	.	155	10	136	0	.	68
B4GALNT4	338707	hgsc.bcm.edu;bcgsc.ca	37	11	376081	376081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	B4GALNT4	NM_178537	exon12	c.T1103C	p.L368P	.	.	62	4	55	0	.	91
BAG3	9531	bcgsc.ca	37	10	121436497	121436497	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BAG3	NM_004281	exon4	c.T1431C	p.R477R	.	.	71	4	92	0	.	229
BAHD1	22893	broad.mit.edu;bcgsc.ca	37	15	40750958	40750958	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BAHD1	NM_014952	exon2	c.295delC	p.P99fs	.	.	77	8	75	0	.	90
BAI2	576	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32207725	32207725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BAI2	NM_001703	exon8	c.C1346T	p.A449V	.	.	139	60	88	0	.	526
BCAR3	8412	hgsc.bcm.edu;broad.mit.edu	37	1	94140264	94140264	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BCAR3	NM_001261409	exon2	c.223delC	p.H75fs	.	.	158	10	121	0	.	228
BCKDHB	594	hgsc.bcm.edu;broad.mit.edu	37	6	80881074	80881074	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BCKDHB	NM_000056	exon6	c.709delT	p.F237fs	.	.	176	12	117	0	.	90
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu	37	2	60688969	60688969	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BCL11A	NM_018014	exon4	c.1078delC	p.L360fs	.	.	192	13	142	0	.	1149
BCR	613	bcgsc.ca	37	22	23634791	23634791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BCR	NM_021574	exon15	c.T2846C	p.V949A	.	.	88	5	75	0	.	1349
BET3L	100128327	hgsc.bcm.edu;broad.mit.edu	37	6	116818120	116818120	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001139444	exon5	c.543delA	p.K181fs	.	.	136	12	105	0	.	.
BFSP2	8419	hgsc.bcm.edu;broad.mit.edu	37	3	133119111	133119111	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BFSP2	NM_003571	exon1	c.184delC	p.P62fs	.	.	154	11	190	0	.	90
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu	37	X	102003967	102003967	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BHLHB9	NM_001142530	exon2	c.44delA	p.E15fs	.	.	171	10	129	0	.	132
BIRC2	329	hgsc.bcm.edu;broad.mit.edu	37	11	102239232	102239232	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BIRC2	NM_001256163	exon6	c.1319delA	p.E440fs	.	.	152	10	98	0	.	660
BMPR2	659	hgsc.bcm.edu;broad.mit.edu	37	2	203407121	203407121	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BMPR2	NM_001204	exon10	c.1364delG	p.R455fs	.	.	164	10	140	0	.	1003
BMS1P4	729096	bcgsc.ca	37	10	75478983	75478983	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	124	6	65	0	.	.
BOD1L1	259282	hgsc.bcm.edu	37	4	13582665	13582665	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_148894	exon21	c.A8682G	p.K2894K	.	.	84	4	78	0	.	.
BPIFB3	359710	hgsc.bcm.edu;broad.mit.edu	37	20	31656746	31656746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_182658	exon10	c.1116delG	p.K372fs	.	.	157	11	151	0	.	.
BPIFC	254240	hgsc.bcm.edu	37	22	32811918	32811918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_174932	exon14	c.A1385G	p.D462G	.	.	100	3	68	0	.	.
BRF1	2972	hgsc.bcm.edu	37	14	105676904	105676904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BRF1	NM_001519	exon18	c.A2018G	p.E673G	.	.	108	4	87	0	.	155
BRPF3	27154	hgsc.bcm.edu;broad.mit.edu	37	6	36179276	36179276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BRPF3	NM_015695	exon7	c.2421delG	p.Q807fs	.	.	142	10	141	0	.	92
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu	37	X	79938011	79938011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BRWD3	NM_153252	exon38	c.4350delA	p.K1450fs	.	.	149	10	163	0	.	134
BTNL2	56244	hgsc.bcm.edu	37	6	32370747	32370747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BTNL2	NM_019602	exon3	c.T674C	p.L225P	.	.	194	6	173	0	.	90
C10orf118	55088	bcgsc.ca	37	10	115894703	115894703	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C10orf118	NM_018017	exon10	c.1624delA	p.T542fs	.	.	42	5	94	0	.	92
C10orf40	283025	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61719043	61719043	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	146	56	176	0	.	.
C10orf76	79591	broad.mit.edu;bcgsc.ca	37	10	103799800	103799800	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C10orf76	NM_024541	exon2	c.72delA	p.K24fs	.	.	55	7	75	0	.	90
C11orf30	56946	hgsc.bcm.edu;broad.mit.edu	37	11	76162945	76162945	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C11orf30	NM_020193	exon3	c.114delG	p.Q38fs	.	.	176	12	88	0	.	232
C11orf73	51501	hgsc.bcm.edu;broad.mit.edu	37	11	86056631	86056631	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C11orf73	NM_016401	exon5	c.545delA	p.E182fs	.	.	127	10	60	0	.	90
C11orf84	144097	hgsc.bcm.edu	37	11	63586119	63586119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C11orf84	NM_138471	exon4	c.A728G	p.D243G	.	.	73	5	34	0	.	90
C15orf39	56905	bcgsc.ca	37	15	75499620	75499620	+	Missense_Mutation	SNP	G	G	C	rs139440190	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C15orf39	NM_015492	exon2	c.G1231C	p.G411R	.	.	181	6	128	0	G|1.000;A|0.000	90
C15orf39	56905	bcgsc.ca	37	15	75500959	75500959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C15orf39	NM_015492	exon2	c.T2570C	p.L857P	.	.	175	6	158	0	.	90
C17orf77	146723	hgsc.bcm.edu	37	17	72588775	72588775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C17orf77	NM_152460	exon3	c.T590C	p.L197P	.	.	125	3	103	0	.	90
C19orf55	148137	hgsc.bcm.edu	37	19	36252918	36252918	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C19orf55	NM_001039887	exon4	c.312-2A>G	.	.	.	79	3	70	0	.	23
C1orf74	148304	hgsc.bcm.edu;broad.mit.edu	37	1	209956336	209956336	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C1orf74	NM_152485	exon2	c.644delC	p.P215fs	.	.	176	11	102	0	.	91
C20orf194	25943	hgsc.bcm.edu	37	20	3285095	3285095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C20orf194	NM_001009984	exon21	c.T1774C	p.Y592H	.	.	99	2	69	0	.	68
C20orf26	26074	bcgsc.ca	37	20	20037349	20037349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C20orf26	NM_015585	exon2	c.A52G	p.R18G	.	.	134	5	128	0	.	94
C21orf58	54058	bcgsc.ca	37	21	47721940	47721940	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C21orf58	NM_058180	exon8	c.942delC	p.P314fs	.	.	45	5	110	0	.	91
C22orf28	51493	hgsc.bcm.edu;bcgsc.ca	37	22	32789991	32789991	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C22orf28	NM_014306	exon11	c.1180-2A>G	.	.	.	75	4	56	0	.	90
C2CD2	25966	hgsc.bcm.edu	37	21	43362260	43362260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2CD2	NM_015500	exon2	c.A374G	p.E125G	.	.	111	4	161	0	.	91
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu	37	12	22666279	22666279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_014802	exon9	c.987delG	p.G329fs	.	.	143	10	115	0	.	.
C2orf42	54980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70402864	70402864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf42	NM_017880	exon5	c.G980A	p.S327N	.	.	117	42	120	0	.	90
C2orf43	60526	hgsc.bcm.edu;broad.mit.edu	37	2	20901391	20901391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf43	NM_021925	exon6	c.725delG	p.G242fs	.	.	180	11	160	0	.	90
C2orf47	79568	hgsc.bcm.edu;bcgsc.ca	37	2	200824539	200824539	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf47	NM_024520	exon4	c.T585C	p.A195A	.	.	95	4	71	0	.	90
C2orf57	165100	hgsc.bcm.edu;broad.mit.edu	37	2	232457732	232457732	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf57	NM_152614	exon1	c.70delC	p.P24fs	.	.	160	10	119	0	.	91
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu	37	2	29294038	29294038	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf71	NM_001029883	exon1	c.3090delC	p.P1030fs	.	.	234	14	214	0	.	91
C6orf1	221491	hgsc.bcm.edu;broad.mit.edu	37	6	34214570	34214570	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C6orf1	NM_001008704	exon5	c.201delC	p.P67fs	.	.	154	10	119	0	.	90
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu	37	6	121624805	121624805	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C6orf170	NM_152730	exon9	c.1038delT	p.F346fs	.	.	131	10	113	0	.	92
C6orf203	51250	hgsc.bcm.edu	37	6	107372314	107372314	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C6orf203	NM_001142470	exon5	c.A612G	p.G204G	.	.	93	4	64	0	.	90
C6orf89	221477	hgsc.bcm.edu;broad.mit.edu	37	6	36870160	36870160	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C6orf89	NM_152734	exon3	c.374delA	p.E125fs	.	.	156	10	135	0	.	91
C7orf31	136895	hgsc.bcm.edu;broad.mit.edu	37	7	25200833	25200833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C7orf31	NM_138811	exon4	c.358delA	p.S120fs	.	.	213	14	168	0	.	90
C7orf66	154907	hgsc.bcm.edu;bcgsc.ca	37	7	108524086	108524086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C7orf66	NM_001024607	exon2	c.T326C	p.F109S	.	.	89	4	88	0	.	92
C9orf50	375759	bcgsc.ca	37	9	132375519	132375519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C9orf50	NM_199350	exon6	c.A1055G	p.K352R	.	.	122	6	112	1	.	91
CACNA1A	773	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	13394203	13394203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CACNA1A	NM_001127221	exon22	c.C3703T	p.R1235C	.	.	237	75	179	0	.	67
CACNA1B	774	hgsc.bcm.edu	37	9	140773613	140773613	+	Splice_Site	SNP	T	T	A	rs201604190		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CACNA1B,NS,carcinoma,0	CACNA1B	NM_001243812	exon2	c.390+2T>A	.	.	.	86	4	51	2	.	138
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu	37	17	48704048	48704048	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CACNA1G	NM_018896	exon38	c.7070delC	p.S2357fs	.	.	156	12	153	0	.	67
CACNA2D1	781	hgsc.bcm.edu	37	7	81662161	81662161	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CACNA2D1	NM_000722	exon12	c.A1095G	p.G365G	.	.	92	3	37	0	.	96
CALCR	799	bcgsc.ca	37	7	93116300	93116300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CALCR	NM_001164737	exon4	c.A48C	p.K16N	.	.	80	4	38	0	.	664
CALML6	163688	hgsc.bcm.edu	37	1	1847882	1847882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CALML6	NM_138705	exon3	c.A81G	p.T27T	.	.	117	4	134	0	.	90
CAMSAP3	57662	hgsc.bcm.edu;broad.mit.edu	37	19	7672746	7672746	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001080429	exon6	c.694delC	p.P232fs	.	.	308	19	254	0	.	.
CAP2	10486	hgsc.bcm.edu;broad.mit.edu	37	6	17543332	17543332	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CAP2	NM_006366	exon11	c.1167delG	p.V389fs	.	.	174	12	139	0	.	91
CAPN3	825	hgsc.bcm.edu;broad.mit.edu	37	15	42698130	42698130	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CAPN3	NM_000070	exon15	c.1789delA	p.K597fs	.	.	157	11	112	0	.	514
CARD9	64170	hgsc.bcm.edu;broad.mit.edu	37	9	139266450	139266450	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CARD9	NM_052813	exon2	c.81delC	p.P27fs	.	.	174	11	149	0	.	229
CASC5	57082	hgsc.bcm.edu	37	15	40914323	40914323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CASC5	NM_170589	exon11	c.G1939A	p.E647K	.	.	98	4	95	0	.	660
CASD1	64921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	94166946	94166946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CASD1	NM_022900	exon9	c.A1006G	p.N336D	.	.	230	45	104	0	.	70
CASKIN1	57524	hgsc.bcm.edu;broad.mit.edu	37	16	2239271	2239271	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CASKIN1	NM_020764	exon5	c.454delC	p.L152fs	.	.	165	11	98	0	.	92
CAT	847	hgsc.bcm.edu;broad.mit.edu	37	11	34470817	34470817	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CAT	NM_001752	exon2	c.145delC	p.P49fs	.	.	165	10	107	0	.	229
CBFA2T2	9139	hgsc.bcm.edu;bcgsc.ca	37	20	32212691	32212691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CBFA2T2	NM_005093	exon7	c.G841T	p.G281W	.	.	151	6	106	0	.	92
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu	37	20	32207380	32207380	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CBFA2T2	NM_005093	exon5	c.505delC	p.P169fs	.	.	143	10	95	0	.	92
CBFA2T3	863	bcgsc.ca	37	16	88951492	88951492	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CBFA2T3	NM_005187	exon7	c.1079delC	p.P360fs	.	.	38	4	70	0	.	722
CBS	875	bcgsc.ca	37	21	44483179	44483179	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CBS	NM_000071	exon10	c.838delG	p.V280fs	.	.	39	4	66	0	.	90
CC2D1A	54862	hgsc.bcm.edu	37	19	14023137	14023137	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CC2D1A	NM_017721	exon3	c.T198C	p.G66G	.	.	81	4	62	0	.	90
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu	37	3	42754657	42754657	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC13	NM_144719	exon14	c.1870delA	p.T624fs	.	.	171	11	126	0	.	91
CCDC138	165055	hgsc.bcm.edu;broad.mit.edu	37	2	109492664	109492664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC138	NM_144978	exon15	c.1953delG	p.L651fs	.	.	200	12	163	0	.	90
CCDC144A	9720	bcgsc.ca	37	17	16676005	16676005	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_014695	exon17	c.4233delT	p.P1411fs	.	.	1322	64	1159	6	.	.
CCDC144B	284047	bcgsc.ca	37	17	18498110	18498110	+	RNA	SNP	T	T	C	rs71220175	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC144B	.	.	.	.	.	.	621	28	420	0	T|0.500;C|0.500	70
CCDC171	203238	bcgsc.ca	37	9	15695237	15695237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_173550	exon11	c.A1220G	p.K407R	.	.	45	4	70	0	.	.
CCDC180	0	hgsc.bcm.edu;broad.mit.edu	37	9	100076709	100076709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_020893	exon6	c.626delT	p.L209fs	.	.	148	10	125	0	.	.
CCDC38	120935	hgsc.bcm.edu;broad.mit.edu	37	12	96292465	96292465	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC38	NM_182496	exon6	c.414delA	p.K138fs	.	.	320	19	290	0	.	91
CCDC41	51134	hgsc.bcm.edu	37	12	94769731	94769731	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC41	NM_016122	exon8	c.T864C	p.S288S	.	.	70	4	71	0	.	90
CCDC47	57003	hgsc.bcm.edu;broad.mit.edu	37	17	61829359	61829359	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC47	NM_020198	exon12	c.1312delA	p.R438fs	.	.	202	13	151	0	.	90
CCDC59	29080	hgsc.bcm.edu;broad.mit.edu	37	12	82746994	82746994	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC59	NM_014167	exon4	c.662delA	p.K221fs	.	.	193	12	163	0	.	90
CCDC64B	146439	hgsc.bcm.edu	37	16	3085376	3085376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001103175	exon1	c.G122T	p.G41V	.	.	134	7	97	0	.	.
CCDC64B	146439	hgsc.bcm.edu;broad.mit.edu	37	16	3085373	3085373	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001103175	exon1	c.125delC	p.P42fs	.	.	135	10	103	0	.	.
CCDC66	285331	hgsc.bcm.edu	37	3	56651451	56651451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC66	NM_001141947	exon14	c.T2155C	p.Y719H	.	.	102	4	96	0	.	135
CCDC73	493860	hgsc.bcm.edu	37	11	32722338	32722338	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC73	NM_001008391	exon5	c.G314G	p.C105C	.	.	82	4	62	0	.	91
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu	37	11	32663555	32663555	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC73	NM_001008391	exon13	c.1013delC	p.T338fs	.	.	161	10	172	0	.	91
CCDC93	54520	hgsc.bcm.edu;broad.mit.edu	37	2	118735578	118735578	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC93	NM_019044	exon8	c.649delA	p.M217fs	.	.	148	10	146	0	.	154
CCNDBP1	23582	hgsc.bcm.edu	37	15	43483239	43483239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCNDBP1	NM_012142	exon7	c.A578G	p.Q193R	.	.	93	2	104	0	.	92
CCR5	1234	hgsc.bcm.edu	37	3	46415316	46415316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCR5	NM_000579	exon3	c.T923C	p.L308P	.	.	96	3	76	0	.	993
CD207	50489	bcgsc.ca	37	2	71062835	71062835	+	Silent	SNP	T	T	C	rs79763209		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD207	NM_015717	exon1	c.A72G	p.R24R	.	.	242	25	236	2	.	46
CD207	50489	hgsc.bcm.edu	37	2	71062836	71062836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD207	NM_015717	exon1	c.G71A	p.R24Q	.	.	248	17	239	0	.	46
CD55	1604	hgsc.bcm.edu;broad.mit.edu	37	1	207510725	207510725	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD55	NM_001114752	exon8	c.1031delC	p.T344fs	.	.	261	17	163	0	.	187
CD74	972	hgsc.bcm.edu	37	5	149792276	149792276	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD74	NM_001025159	exon1	c.C37T	p.Q13X	.	.	123	4	105	0	.	90
CD82	3732	hgsc.bcm.edu;broad.mit.edu	37	11	44639810	44639810	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD82	NM_002231	exon8	c.537delG	p.K179fs	.	.	167	10	129	0	.	227
CD97	976	hgsc.bcm.edu	37	19	14508727	14508727	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD97	NM_078481	exon8	c.799delC	p.P267fs	.	.	197	13	149	0	.	570
CDC23	8697	hgsc.bcm.edu;broad.mit.edu	37	5	137537124	137537124	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDC23	NM_004661	exon5	c.429delA	p.K143fs	.	.	148	10	111	0	.	226
CDC42BPG	55561	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64598997	64598997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDC42BPG	NM_017525	exon28	c.C3284T	p.T1095M	.	.	241	29	180	0	.	528
CDC42EP4	23580	hgsc.bcm.edu;broad.mit.edu	37	17	71281984	71281984	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDC42EP4	NM_012121	exon2	c.656delG	p.G219fs	.	.	176	11	177	0	.	90
CDH10	1008	hgsc.bcm.edu	37	5	24488013	24488013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH10	NM_006727	exon12	c.A2126G	p.D709G	.	.	121	4	115	0	.	253
CDH20	28316	hgsc.bcm.edu;broad.mit.edu	37	18	59195338	59195338	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH20	NM_031891	exon6	c.1156delC	p.P386fs	.	.	286	17	227	0	.	155
CDH22	64405	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	44839091	44839091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH22	NM_021248	exon7	c.G1141A	p.V381M	.	.	128	58	89	0	.	95
CDH23	64072	hgsc.bcm.edu;broad.mit.edu	37	10	73326586	73326586	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH23	NM_052836	exon7	c.517delC	p.P173fs	.	.	122	10	128	0	.	563
CDK8	1024	bcgsc.ca	37	13	26975761	26975761	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDK8	NM_001260	exon12	c.1269delG	p.Q423fs	.	.	62	6	72	0	.	1023
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu	37	6	21108646	21108646	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDKAL1	NM_017774	exon13	c.1251delA	p.T417fs	.	.	139	11	107	0	.	92
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu	37	4	76523281	76523281	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDKL2	NM_003948	exon8	c.1000delA	p.R334fs	.	.	173	11	118	0	.	454
CDKL5	6792	hgsc.bcm.edu	37	X	18593549	18593549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDKL5	NM_003159	exon5	c.A221G	p.E74G	.	.	97	4	105	0	.	838
CDKN1B	1027	hgsc.bcm.edu	37	12	12871837	12871837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDKN1B	NM_004064	exon2	c.A554G	p.E185G	.	.	71	1	62	0	.	1271
CDR2	1039	hgsc.bcm.edu	37	16	22376296	22376296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDR2	NM_001802	exon2	c.A119G	p.D40G	.	.	137	4	138	0	.	91
CDRT15	146822	broad.mit.edu;bcgsc.ca	37	17	14140031	14140031	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDRT15	NM_001007530	exon1	c.120delT	p.V40fs	.	.	389	9	343	0	.	90
CDRT4	284040	hgsc.bcm.edu	37	17	15343532	15343532	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDRT4	NM_001204477	exon3	c.G21A	p.K7K	.	.	111	18	96	0	.	90
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu	37	2	37455194	37455194	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEBPZ	NM_005760	exon2	c.1142delA	p.K381fs	.	.	159	10	105	0	.	91
CELF5	60680	hgsc.bcm.edu;broad.mit.edu	37	19	3290263	3290263	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CELF5	NM_021938	exon11	c.1221delC	p.L407fs	.	.	317	19	269	0	.	92
CELSR1	9620	hgsc.bcm.edu	37	22	46777807	46777807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CELSR1	NM_014246	exon21	c.A7024G	p.I2342V	.	.	90	4	80	0	.	525
CEP290	80184	hgsc.bcm.edu;broad.mit.edu	37	12	88510832	88510832	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEP290	NM_025114	exon18	c.1802delA	p.N601fs	.	.	230	14	215	0	.	96
CEP70	80321	hgsc.bcm.edu	37	3	138227297	138227297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEP70	NM_024491	exon12	c.A1034G	p.D345G	.	.	256	7	191	0	.	69
CEP76	79959	hgsc.bcm.edu;broad.mit.edu	37	18	12678387	12678387	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEP76	NM_024899	exon10	c.1344delA	p.K448fs	.	.	157	10	137	0	.	90
CETP	1071	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57005938	57005938	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CETP	NM_000078	exon8	c.C693T	p.D231D	.	.	123	36	131	0	.	91
CFH	3075	hgsc.bcm.edu;broad.mit.edu	37	1	196706674	196706674	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CFH	NM_000186	exon17	c.2666delA	p.E889fs	.	.	172	11	105	0	.	566
CFHR5	81494	hgsc.bcm.edu;broad.mit.edu	37	1	196953169	196953169	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CFHR5	NM_030787	exon3	c.332delA	p.Q111fs	.	.	194	12	103	0	.	154
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu	37	15	57743740	57743740	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CGNL1	NM_001252335	exon6	c.1846delA	p.K616fs	.	.	180	11	155	0	.	100
CHD1	1105	hgsc.bcm.edu;broad.mit.edu	37	5	98207855	98207855	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD1	NM_001270	exon27	c.3761delG	p.G1254fs	.	.	183	11	128	0	.	274
CHD2	1106	hgsc.bcm.edu	37	15	93547897	93547897	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD2	NM_001271	exon34	c.T4329C	p.G1443G	.	.	104	5	100	0	.	229
CHD3	1107	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7809999	7809999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD3	NM_001005271	exon29	c.C4664A	p.S1555Y	.	.	79	49	105	0	.	228
CHD9	80205	hgsc.bcm.edu	37	16	53338485	53338485	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD9	NM_025134	exon31	c.T6567C	p.S2189S	.	.	151	22	99	0	.	272
CHEK1	1111	hgsc.bcm.edu;broad.mit.edu	37	11	125505404	125505404	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHEK1	NM_001244846	exon7	c.694delA	p.K232fs	.	.	131	10	100	0	.	1509
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu	37	22	29099532	29099532	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHEK2	NM_001005735	exon9	c.998delA	p.N333fs	.	.	133	10	85	0	.	1515
CHFR	55743	hgsc.bcm.edu;broad.mit.edu	37	12	133418144	133418144	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHFR	NM_001161344	exon18	c.1991delA	p.N664fs	.	.	124	10	160	0	.	227
CHM	1121	hgsc.bcm.edu	37	X	85282510	85282510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHM	NM_001145414	exon2	c.T101C	p.V34A	.	.	126	5	92	0	.	131
CHPT1	56994	hgsc.bcm.edu;broad.mit.edu	37	12	102107976	102107976	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHPT1	NM_020244	exon2	c.382delG	p.G128fs	.	.	176	11	129	0	.	90
CKAP2L	150468	hgsc.bcm.edu;broad.mit.edu	37	2	113520086	113520086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CKAP2L	NM_152515	exon2	c.98delA	p.N33fs	.	.	157	10	83	0	.	90
CKM	1158	hgsc.bcm.edu;broad.mit.edu	37	19	45811713	45811713	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CKM	NM_001824	exon6	c.731delG	p.G244fs	.	.	164	12	105	0	.	91
CKMT2	1160	hgsc.bcm.edu;broad.mit.edu	37	5	80552810	80552810	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CKMT2	NM_001825	exon7	c.746delG	p.R249fs	.	.	209	15	188	0	.	90
CLC	1178	bcgsc.ca	37	19	40224987	40224987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLC	NM_001828	exon3	c.A239C	p.N80T	.	.	160	6	135	0	.	90
CLDN2	9075	hgsc.bcm.edu;broad.mit.edu	37	X	106171549	106171549	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLDN2	NM_001171092	exon2	c.91delA	p.K31fs	.	.	117	10	93	0	.	131
CLDN8	9073	hgsc.bcm.edu;broad.mit.edu	37	21	31587622	31587622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLDN8	NM_199328	exon1	c.622delA	p.S208fs	.	.	183	12	208	0	.	90
CLGN	1047	hgsc.bcm.edu	37	4	141320135	141320135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLGN	NM_001130675	exon9	c.A754G	p.S252G	.	.	81	4	143	0	.	93
CLIP4	79745	hgsc.bcm.edu;broad.mit.edu	37	2	29383293	29383293	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLIP4	NM_024692	exon12	c.1494delG	p.L498fs	.	.	169	11	135	0	.	91
CLSTN3	9746	hgsc.bcm.edu	37	12	7295529	7295529	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLSTN3	NM_014718	exon11	c.T1605C	p.G535G	.	.	232	7	183	0	.	153
CLTCL1	8218	hgsc.bcm.edu	37	22	19189005	19189005	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLTCL1	NM_001835	exon24	c.3602-2A>G	.	.	.	134	11	106	0	.	230
CLTCL1	8218	hgsc.bcm.edu	37	22	19217362	19217362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLTCL1	NM_001835	exon11	c.A1781G	p.Q594R	.	.	93	4	66	0	.	230
CLTCL1	8218	hgsc.bcm.edu;bcgsc.ca	37	22	19189003	19189003	+	Missense_Mutation	SNP	A	A	C	rs112507727		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLTCL1	NM_001835	exon23	c.T3602G	p.V1201G	.	.	141	2	113	0	A|0.500;C|0.500	230
CLUH	23277	hgsc.bcm.edu	37	17	2604059	2604059	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_015229	exon8	c.C972T	p.A324A	.	.	71	4	65	0	.	.
CNDP2	55748	hgsc.bcm.edu	37	18	72186182	72186182	+	Splice_Site	SNP	A	A	C	rs199640601		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CNDP2	NM_018235	exon11	c.1211-2A>C	.	.	.	76	4	60	0	.	93
CNTN3	5067	hgsc.bcm.edu	37	3	74413707	74413707	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CNTN3	NM_020872	exon9	c.1124delA	p.N375fs	.	.	180	12	134	0	.	137
CNTN5	53942	hgsc.bcm.edu;bcgsc.ca	37	11	99715962	99715962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CNTN5	NM_001243270	exon5	c.T545C	p.I182T	.	.	86	4	51	0	.	366
CNTNAP3B	728577	broad.mit.edu;bcgsc.ca	37	9	43815911	43815911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001201380	exon5	c.665delT	p.L222fs	.	.	758	12	639	0	.	.
CNTNAP3B	728577	broad.mit.edu;bcgsc.ca	37	9	43815913	43815913	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001201380	exon5	c.667delC	p.H223fs	.	.	754	11	652	0	.	.
CNTRL	11064	hgsc.bcm.edu	37	9	123857214	123857214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CNTRL	NM_007018	exon3	c.A397G	p.S133G	.	.	86	3	80	0	.	661
COBL	23242	hgsc.bcm.edu;broad.mit.edu	37	7	51287562	51287562	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COBL	NM_015198	exon2	c.121delC	p.H41fs	.	.	169	16	147	0	.	95
COG2	22796	hgsc.bcm.edu;broad.mit.edu	37	1	230800279	230800279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COG2	NM_007357	exon5	c.431delA	p.E144fs	.	.	156	12	78	0	.	90
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33152022	33152022	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL11A2	NM_080680	exon8	c.1019delC	p.P340fs	.	.	104	11	73	0	.	95
COL15A1	1306	hgsc.bcm.edu	37	9	101829178	101829178	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL15A1	NM_001855	exon40	c.T3666C	p.A1222A	.	.	102	3	80	0	.	96
COL18A1	80781	bcgsc.ca	37	21	46932234	46932234	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL18A1	NM_030582	exon42	c.4473delG	p.L1491fs	.	.	36	4	115	0	.	90
COL18A1	80781	hgsc.bcm.edu	37	21	46899863	46899863	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL18A1	NM_030582	exon9	c.T1836C	p.G612G	.	.	60	4	67	0	.	90
COL27A1	85301	hgsc.bcm.edu	37	9	117052561	117052561	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL27A1	NM_032888	exon47	c.A4318T	p.I1440F	.	.	212	27	186	0	.	94
COL28A1	340267	hgsc.bcm.edu	37	7	7555463	7555463	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL28A1	NM_001037763	exon8	c.T864C	p.P288P	.	.	94	2	84	0	.	93
COL4A3	1285	hgsc.bcm.edu	37	2	228174007	228174007	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL4A3	NM_000091	exon50	c.T4728C	p.S1576S	.	.	112	3	134	0	.	132
COL4A6	1288	hgsc.bcm.edu	37	X	107448673	107448673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL4A6	NM_001847	exon11	c.T686C	p.V229A	.	.	99	5	59	0	.	199
COL5A1	1289	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137726974	137726974	+	Missense_Mutation	SNP	G	G	A	rs150608071		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL5A1	NM_000093	exon65	c.G5294A	p.R1765H	.	.	129	52	122	0	G|1.000;A|0.000	524
COL7A1	1294	hgsc.bcm.edu	37	3	48610625	48610625	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL7A1	NM_000094	exon84	c.6696delC	p.P2232fs	.	.	131	10	83	0	.	160
COL8A1	1295	hgsc.bcm.edu;broad.mit.edu	37	3	99513597	99513597	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL8A1	NM_001850	exon5	c.852delC	p.G284fs	.	.	91	10	57	0	.	90
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu	37	20	61458146	61458146	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL9A3	NM_001853	exon15	c.766delG	p.G256fs	.	.	134	10	86	0	.	514
COLEC12	81035	bcgsc.ca	37	18	334759	334759	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COLEC12	NM_130386	exon6	c.C1799G	p.P600R	.	.	139	6	105	0	.	92
COMMD3-BMI1	0	hgsc.bcm.edu;bcgsc.ca	37	10	22618212	22618212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001204062	exon14	c.A1151G	p.D384G	.	.	66	4	61	0	.	.
CORO2A	7464	hgsc.bcm.edu;broad.mit.edu	37	9	100889088	100889088	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CORO2A	NM_003389	exon11	c.1189delC	p.L397fs	.	.	121	10	81	0	.	230
COX1	5742	bcgsc.ca	37	MT	7212	7212	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	ENST00000361624	exon1	c.1309delC	p.P437fs	.	.	13	3	101	0	.	.
CPA3	1359	hgsc.bcm.edu	37	3	148599385	148599385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPA3	NM_001870	exon7	c.T653C	p.F218S	.	.	96	4	72	0	.	154
CPA4	51200	hgsc.bcm.edu;broad.mit.edu	37	7	129944394	129944394	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPA4	NM_016352	exon5	c.461delA	p.E154fs	.	.	193	12	171	0	.	515
CPEB3	22849	hgsc.bcm.edu	37	10	93904731	93904731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPEB3	NM_014912	exon5	c.T1334C	p.V445A	.	.	73	4	70	0	.	90
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu	37	5	173317577	173317577	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPEB4	NM_030627	exon1	c.841delC	p.P281fs	.	.	141	11	94	0	.	90
CPO	130749	hgsc.bcm.edu;broad.mit.edu	37	2	207833909	207833909	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPO	NM_173077	exon9	c.874delG	p.G292fs	.	.	149	10	119	0	.	154
CRAMP1L	57585	hgsc.bcm.edu	37	16	1719148	1719148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_020825	exon18	c.T3481C	p.S1161P	.	.	79	3	90	0	.	.
CRBN	51185	broad.mit.edu;bcgsc.ca	37	3	3215814	3215814	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRBN	NM_016302	exon3	c.306delT	p.F102fs	.	.	83	8	84	0	.	91
CREB3L2	64764	hgsc.bcm.edu	37	7	137612918	137612918	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CREB3L2	NM_001253775	exon2	c.C297T	p.T99T	.	.	379	20	288	0	.	92
CREBRF	153222	hgsc.bcm.edu;broad.mit.edu	37	5	172537584	172537584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_153607	exon6	c.1477delA	p.K493fs	.	.	164	10	148	0	.	.
CRHR2	1395	ucsc.edu;bcgsc.ca	37	7	30705231	30705231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRHR2	NM_001202475	exon5	c.C421A	p.R141S	.	.	598	92	401	1	.	524
CRISP2	7180	hgsc.bcm.edu;broad.mit.edu	37	6	49660494	49660494	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRISP2	NM_001142408	exon10	c.724delA	p.I242fs	.	.	137	10	98	0	.	91
CRISPLD1	83690	hgsc.bcm.edu;bcgsc.ca	37	8	75932282	75932282	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRISPLD1	NM_031461	exon12	c.T1212C	p.C404C	.	.	253	8	157	0	.	91
CROT	54677	hgsc.bcm.edu	37	7	86988625	86988625	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CROT	NM_001143935	exon5	c.A303G	p.R101R	.	.	144	4	68	0	.	280
CSMD1	64478	hgsc.bcm.edu	37	8	3216715	3216715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CSMD1_ENST00000318252,NS,carcinoma,0	CSMD1	NM_033225	exon21	c.G3263A	p.G1088E	.	.	74	3	90	1	.	86
CSMD1	64478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2820095	2820095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CSMD1	NM_033225	exon61	c.A9521T	p.K3174M	.	.	71	42	91	0	.	86
CSMD2	114784	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34011768	34011768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CSMD2	NM_052896	exon56	c.G8537A	p.R2846H	.	.	114	45	106	0	.	103
CST6	1474	hgsc.bcm.edu	37	11	65779730	65779730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CST6	NM_001323	exon1	c.C215T	p.T72M	.	.	95	4	60	0	.	523
CTDNEP1	23399	bcgsc.ca	37	17	7147564	7147564	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CTDNEP1	NM_001143775	exon8	c.675delG	p.R225fs	.	.	37	4	70	0	.	91
CTRL	1506	hgsc.bcm.edu	37	16	67963841	67963841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CTRL	NM_001907	exon7	c.A791G	p.N264S	.	.	97	4	92	0	.	90
CTU2	348180	hgsc.bcm.edu;broad.mit.edu	37	16	88780815	88780815	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CTU2	NM_001012759	exon11	c.1122delC	p.G374fs	.	.	193	12	162	0	.	23
CUBN	8029	hgsc.bcm.edu	37	10	17113457	17113457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CUBN	NM_001081	exon19	c.A2593G	p.S865G	.	.	122	5	77	0	.	166
CUL3	8452	hgsc.bcm.edu;broad.mit.edu	37	2	225368413	225368413	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CUL3	NM_001257198	exon9	c.1351delA	p.S451fs	.	.	155	10	130	0	.	229
CWC15	51503	bcgsc.ca	37	11	94699511	94699511	+	RNA	SNP	G	G	A	rs199601949		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	276	21	273	0	.	.
CWH43	80157	hgsc.bcm.edu;bcgsc.ca	37	4	49063874	49063874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CWH43	NM_025087	exon16	c.T2067A	p.H689Q	.	.	157	7	92	0	.	93
CXCL17	284340	hgsc.bcm.edu	37	19	42937936	42937936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CXCL17	NM_198477	exon2	c.A152G	p.E51G	.	.	112	3	99	0	.	68
CXorf40A	91966	hgsc.bcm.edu;broad.mit.edu	37	X	148627384	148627384	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CXorf40A	NM_178124	exon4	c.208delA	p.T70fs	.	.	205	16	162	0	.	22
CYB5R2	51700	hgsc.bcm.edu	37	11	7686607	7686607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYB5R2	NM_016229	exon9	c.T829A	p.X277K	.	.	99	16	86	0	.	90
CYFIP2	26999	hgsc.bcm.edu	37	5	156721861	156721861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYFIP2	NM_001037332	exon4	c.A277T	p.I93F	.	.	218	16	262	0	.	22
CYFIP2	26999	hgsc.bcm.edu;bcgsc.ca	37	5	156721863	156721863	+	Silent	SNP	T	T	C	rs200051515		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYFIP2	NM_001037332	exon4	c.T279C	p.I93I	.	.	216	3	261	0	.	22
CYLD	1540	hgsc.bcm.edu	37	16	50785567	50785567	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYLD	NM_001042355	exon4	c.557delT	p.L186fs	.	.	143	10	119	0	.	2444
CYP2B6	1555	hgsc.bcm.edu;broad.mit.edu	37	19	41510031	41510031	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYP2B6	NM_000767	exon2	c.297delA	p.G99fs	.	.	150	10	122	0	.	92
CYP4F24P	388514	bcgsc.ca	37	19	15881954	15881954	+	RNA	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	123	5	96	0	.	.
CYTH4	27128	hgsc.bcm.edu	37	22	37709517	37709517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYTH4	NM_013385	exon13	c.T1150C	p.S384P	.	.	149	4	129	0	.	229
CYTH4	27128	hgsc.bcm.edu;broad.mit.edu	37	22	37707049	37707049	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYTH4	NM_013385	exon10	c.829delA	p.K277fs	.	.	179	13	141	0	.	229
DCAF16	54876	hgsc.bcm.edu;broad.mit.edu	37	4	17805674	17805674	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DCAF16	NM_017741	exon3	c.91delG	p.E31fs	.	.	147	10	108	0	.	91
DCST2	127579	hgsc.bcm.edu;broad.mit.edu	37	1	155001838	155001838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DCST2	NM_144622	exon8	c.1213delT	p.Y405fs	.	.	211	13	94	0	.	92
DCT	1638	broad.mit.edu;bcgsc.ca	37	13	95131431	95131431	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DCT	NM_001129889	exon1	c.79delC	p.R27fs	.	.	60	7	100	0	.	94
DDR1	780	hgsc.bcm.edu	37	6	30865154	30865154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDR1	NM_013994	exon14	c.A2014G	p.R672G	.	.	79	3	57	0	.	1403
DDX11L10	100287029	bcgsc.ca	37	16	64384	64384	+	Silent	SNP	C	C	G	rs11490464	bycluster;byhapmap	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	191	24	150	0	.	.
DDX12P	440081	hgsc.bcm.edu	37	12	9574420	9574420	+	RNA	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	260	16	225	0	.	.
DDX18	8886	hgsc.bcm.edu;broad.mit.edu	37	2	118579744	118579744	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX18	NM_006773	exon7	c.973delA	p.K325fs	.	.	233	14	177	0	.	290
DDX20	11218	hgsc.bcm.edu;broad.mit.edu	37	1	112309341	112309341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX20	NM_007204	exon11	c.2295delT	p.S765fs	.	.	200	12	140	0	.	227
DDX43	55510	hgsc.bcm.edu;bcgsc.ca	37	6	74125911	74125911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX43	NM_018665	exon16	c.A1909G	p.M637V	.	.	71	4	57	0	.	229
DDX46	9879	hgsc.bcm.edu;broad.mit.edu	37	5	134109494	134109494	+	Frame_Shift_Del	DEL	A	A	-	rs35026423		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX46	NM_014829	exon5	c.556delA	p.K186fs	.	.	174	12	121	0	.	227
DEFB131	644414	hgsc.bcm.edu;broad.mit.edu	37	4	9446272	9446272	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DEFB131	NM_001040448	exon1	c.13delT	p.F5fs	.	.	216	14	210	0	.	68
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DENND4B	NM_014856	exon18	c.C2722G	p.Q908E	.	.	220	29	90	0	.	69
DENND4B	9909	hgsc.bcm.edu	37	1	153907315	153907315	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DENND4B	NM_014856	exon18	c.G2694A	p.Q898Q	.	.	220	13	128	0	.	69
DENND5B	160518	hgsc.bcm.edu	37	12	31632582	31632582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DENND5B	NM_144973	exon3	c.A845G	p.N282S	.	.	95	4	76	0	.	24
DEPDC7	91614	hgsc.bcm.edu;broad.mit.edu	37	11	33050250	33050250	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DEPDC7	NM_001077242	exon4	c.694delA	p.K232fs	.	.	166	10	133	0	.	92
DFNB59	494513	hgsc.bcm.edu;broad.mit.edu	37	2	179325894	179325894	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DFNB59	NM_001042702	exon7	c.952delA	p.K318fs	.	.	153	10	115	0	.	22
DGKE	8526	hgsc.bcm.edu;broad.mit.edu	37	17	54926133	54926133	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DGKE	NM_003647	exon6	c.965delG	p.W322fs	.	.	193	12	158	0	.	289
DGKK	139189	bcgsc.ca	37	X	50121148	50121148	+	RNA	SNP	C	C	G	rs200471112		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DGKK	.	.	.	.	.	.	72	7	78	0	.	227
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu	37	10	12154919	12154919	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DHTKD1	NM_018706	exon13	c.2175delG	p.E725fs	.	.	155	12	111	0	.	515
DHX33	56919	hgsc.bcm.edu;broad.mit.edu	37	17	5353579	5353579	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DHX33	NM_020162	exon10	c.1672delG	p.D558fs	.	.	148	11	173	0	.	228
DHX36	170506	broad.mit.edu	37	3	154002370	154002370	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DHX36	NM_001114397	exon20	c.2250+2T>A	.	.	.	141	10	124	2	.	226
DHX36	170506	hgsc.bcm.edu;broad.mit.edu	37	3	154010423	154010423	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DHX36	NM_020865	exon15	c.1731delT	p.F577fs	.	.	205	13	199	0	.	226
DICER1	23405	hgsc.bcm.edu;broad.mit.edu	37	14	95562262	95562262	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DICER1	NM_030621	exon24	c.4995delG	p.G1665fs	.	.	168	11	140	0	.	961
DIO2	1734	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	80669460	80669460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIO2	.	.	.	.	.	.	116	44	99	0	.	22
DIP2B	57609	hgsc.bcm.edu	37	12	51077012	51077012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIP2B	NM_173602	exon10	c.A1298G	p.E433G	.	.	82	2	53	0	.	95
DIS3	22894	hgsc.bcm.edu	37	13	73342977	73342977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIS3	NM_014953	exon14	c.T1829C	p.L610P	.	.	170	4	214	0	.	90
DIS3L2	129563	hgsc.bcm.edu	37	2	233113947	233113947	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIS3L2	NM_152383	exon12	c.1318-2A>G	.	.	.	126	2	114	0	.	136
DIXDC1	85458	bcgsc.ca	37	11	111853109	111853109	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIXDC1	.	.	.	.	.	.	152	12	96	1	.	91
DKC1	1736	broad.mit.edu;bcgsc.ca	37	X	154001508	154001508	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DKC1	NM_001363	exon11	c.1139delG	p.W380fs	.	.	169	16	167	0	.	227
DMBX1	127343	hgsc.bcm.edu;broad.mit.edu	37	1	46976722	46976722	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMBX1	NM_147192	exon3	c.464delC	p.A155fs	.	.	198	14	168	0	.	227
DMD	1756	broad.mit.edu;bcgsc.ca	37	X	32503165	32503165	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMD	NM_004006	exon21	c.2674delA	p.I892fs	.	.	81	8	91	0	.	265
DMPK	1760	hgsc.bcm.edu;broad.mit.edu	37	19	46283130	46283130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMPK	NM_001081563	exon1	c.188delC	p.P63fs	.	.	107	10	71	0	.	546
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu	37	7	86813845	86813845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMTF1	NM_001142327	exon11	c.953delA	p.E318fs	.	.	197	12	74	0	.	91
DMXL1	1657	hgsc.bcm.edu	37	5	118483090	118483090	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMXL1	NM_005509	exon17	c.2836delT	p.F946fs	.	.	219	14	171	0	.	92
DMXL1	1657	hgsc.bcm.edu;bcgsc.ca	37	5	118569090	118569090	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMXL1	NM_005509	exon38	c.A8331G	p.Q2777Q	.	.	122	6	115	0	.	92
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu	37	5	118450216	118450216	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMXL1	NM_005509	exon6	c.544delT	p.F182fs	.	.	277	17	221	0	.	92
DNAH10	196385	hgsc.bcm.edu;bcgsc.ca	37	12	124354958	124354958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH10	NM_207437	exon43	c.A7211G	p.N2404S	.	.	65	4	78	0	.	95
DNAH10	196385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124323027	124323027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH10	NM_207437	exon28	c.C4573A	p.P1525T	.	.	52	19	72	0	.	95
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu	37	3	57357612	57357612	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH12	NM_178504	exon48	c.7410delA	p.K2470fs	.	.	161	10	119	0	.	47
DNAH14	127602	bcgsc.ca	37	1	225528186	225528186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH14	NM_001373	exon67	c.C10182A	p.N3394K	.	.	401	11	278	0	.	23
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu	37	17	76482378	76482378	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH17	NM_173628	exon45	c.7029delC	p.P2343fs	.	.	183	11	86	0	.	142
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu	37	2	196673531	196673531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH7	NM_018897	exon53	c.9958delT	p.C3320fs	.	.	139	12	121	0	.	102
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	196799425	196799426	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH7	NM_018897	exon21	c.3360_3361del	p.1120_1121del	.	.	225	0	215	0	.	102
DNAH7	56171	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196912185	196912185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH7	NM_018897	exon5	c.C289T	p.P97S	.	.	193	71	150	1	.	102
DNAH9	1770	hgsc.bcm.edu	37	17	11686973	11686973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH9	NM_001372	exon40	c.A7729G	p.S2577G	.	.	109	2	84	0	.	168
DNAJA1	3301	hgsc.bcm.edu;bcgsc.ca	37	9	33037024	33037024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAJA1	NM_001539	exon8	c.A886G	p.K296E	.	.	83	4	51	0	.	226
DNAJC2	27000	hgsc.bcm.edu;broad.mit.edu	37	7	102953447	102953447	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAJC2	NM_014377	exon16	c.1738delA	p.I580X	.	.	179	12	154	0	.	158
DNAJC24	120526	hgsc.bcm.edu;broad.mit.edu	37	11	31392319	31392319	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAJC24	NM_181706	exon2	c.24delA	p.P8fs	.	.	153	11	130	0	.	153
DNM3	26052	hgsc.bcm.edu;broad.mit.edu	37	1	172356459	172356459	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNM3	NM_015569	exon19	c.2245delC	p.P749fs	.	.	146	12	100	0	.	90
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu	37	2	25505341	25505341	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNMT3A	NM_175630	exon4	c.417delC	p.P139fs	.	.	159	12	123	0	.	1924
DNMT3L	29947	bcgsc.ca	37	21	45678501	45678501	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNMT3L	NM_013369	exon6	c.421delG	p.V141fs	.	.	38	4	78	0	.	228
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu	37	10	129242484	129242484	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DOCK1	NM_001380	exon50	c.5291delC	p.S1764fs	.	.	139	10	100	0	.	698
DOCK5	80005	hgsc.bcm.edu;broad.mit.edu	37	8	25136115	25136115	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DOCK5	NM_024940	exon5	c.255delC	p.L85fs	.	.	198	12	216	0	.	71
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu	37	1	63114152	63114152	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DOCK7	NM_001271999	exon5	c.453delA	p.K151fs	.	.	161	10	146	0	.	92
DOCK8	81704	bcgsc.ca	37	9	390487	390487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DOCK8	NM_203447	exon24	c.T2891C	p.L964P	.	.	195	6	248	0	.	517
DPP10	57628	bcgsc.ca	37	2	116594126	116594126	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DPP10	NM_001178034	exon23	c.A2106G	p.E702E	.	.	132	5	130	0	.	142
DPP4	1803	hgsc.bcm.edu;broad.mit.edu	37	2	162877091	162877091	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DPP4	NM_001935	exon13	c.1176delA	p.K392fs	.	.	214	14	160	0	.	93
DPP8	54878	bcgsc.ca	37	15	65773943	65773943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DPP8	NM_197960	exon10	c.T1076C	p.V359A	.	.	147	5	80	0	.	91
DPY19L4	286148	hgsc.bcm.edu;broad.mit.edu	37	8	95780680	95780680	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DPY19L4	NM_181787	exon12	c.1233delT	p.D411fs	.	.	190	13	129	0	.	92
DRAP1	10589	hgsc.bcm.edu;broad.mit.edu	37	11	65688853	65688853	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DRAP1	NM_006442	exon7	c.565delC	p.P189fs	.	.	382	23	221	0	.	90
DRD3	1814	bcgsc.ca	37	3	113858352	113858352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DRD3	NM_033663	exon5	c.C718A	p.Q240K	.	.	229	7	206	0	.	93
DSC3	1825	hgsc.bcm.edu;bcgsc.ca	37	18	28604328	28604328	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSC3	NM_024423	exon6	c.A762G	p.E254E	.	.	54	5	40	0	.	94
DSCAM	1826	bcgsc.ca	37	21	41668038	41668038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSCAM	NM_001271534	exon10	c.T2126C	p.L709P	.	.	79	4	105	1	.	101
DSCR3	10311	bcgsc.ca	37	21	38604751	38604751	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSCR3	NM_006052	exon5	c.434delC	p.P145fs	.	.	60	6	78	0	.	90
DSG3	1830	hgsc.bcm.edu	37	18	29055783	29055783	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSG3	NM_001944	exon16	c.2560delA	p.K854fs	.	.	196	12	168	0	.	98
DSG3	1830	hgsc.bcm.edu;broad.mit.edu	37	18	29054359	29054359	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSG3	NM_001944	exon15	c.2377delT	p.F793fs	.	.	143	10	134	0	.	98
DST	667	hgsc.bcm.edu;broad.mit.edu	37	6	56336022	56336022	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DST	NM_015548	exon76	c.14334delA	p.K4778fs	.	.	158	11	143	0	.	523
DST	667	hgsc.bcm.edu;broad.mit.edu	37	6	56362695	56362695	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DST	NM_015548	exon62	c.12184delA	p.T4062fs	.	.	210	13	189	0	.	523
DTL	51514	hgsc.bcm.edu;bcgsc.ca	37	1	212238257	212238257	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DTL	NM_016448	exon7	c.527-2A>G	.	.	.	82	4	56	0	.	22
DTX3L	151636	hgsc.bcm.edu;broad.mit.edu	37	3	122284754	122284754	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DTX3L	NM_138287	exon2	c.236delA	p.E79fs	.	.	150	13	136	0	.	587
DVL2	1856	hgsc.bcm.edu	37	17	7132947	7132947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DVL2	NM_004422	exon6	c.A707G	p.H236R	.	.	81	4	89	0	.	659
DYNC1LI1	51143	hgsc.bcm.edu;broad.mit.edu	37	3	32570036	32570036	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYNC1LI1	NM_016141	exon12	c.1364delA	p.K455fs	.	.	117	10	101	0	.	91
DYNC1LI1	51143	hgsc.bcm.edu;broad.mit.edu	37	3	32611883	32611883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYNC1LI1	NM_016141	exon2	c.175delC	p.R59fs	.	.	183	11	135	0	.	91
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu	37	11	103158325	103158325	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYNC2H1	NM_001080463	exon76	c.11107delA	p.K3703fs	.	.	234	15	186	0	.	68
DYRK4	8798	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	4700393	4700393	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYRK4	NM_003845	exon3	c.G47C	p.S16T	.	.	199	66	170	0	.	360
DZIP1L	199221	hgsc.bcm.edu	37	3	137790628	137790628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DZIP1L	NM_001170538	exon13	c.T1472C	p.L491P	.	.	89	3	83	0	.	92
EAF1	85403	bcgsc.ca	37	3	15477982	15477982	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EAF1	NM_033083	exon5	c.T660C	p.S220S	.	.	184	15	176	6	.	90
ECT2L	345930	hgsc.bcm.edu;bcgsc.ca	37	6	139197610	139197610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ECT2L	NM_001195037	exon13	c.A1580G	p.E527G	.	.	72	4	64	0	.	22
EDARADD	128178	bcgsc.ca	37	1	236557772	236557772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EDARADD	NM_145861	exon1	c.G28A	p.G10R	.	.	235	6	113	0	.	90
EDARADD	128178	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236577581	236577581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EDARADD	NM_145861	exon3	c.G142A	p.D48N	.	.	164	55	75	0	.	90
EFCAB5	374786	hgsc.bcm.edu;bcgsc.ca	37	17	28407894	28407894	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EFCAB5	NM_198529	exon17	c.T3321C	p.P1107P	.	.	144	5	101	0	.	70
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu	37	1	64034025	64034025	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EFCAB7	NM_032437	exon12	c.1542delA	p.P514fs	.	.	143	10	100	0	.	68
EFHC1	114327	hgsc.bcm.edu;broad.mit.edu	37	6	52343943	52343943	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EFHC1	NM_018100	exon8	c.1387delG	p.G463fs	.	.	153	12	131	0	.	93
EGLN2	112398	hgsc.bcm.edu	37	19	41306911	41306911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EGLN2	NM_053046	exon2	c.A434G	p.E145G	.	.	206	6	179	0	.	228
EHBP1	23301	hgsc.bcm.edu;broad.mit.edu	37	2	63176136	63176136	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EHBP1	NM_015252	exon14	c.2260delA	p.K754fs	.	.	178	12	163	0	.	154
EHBP1L1	254102	hgsc.bcm.edu;broad.mit.edu	37	11	65351025	65351025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EHBP1L1	NM_001099409	exon9	c.2882delT	p.V961fs	.	.	193	13	116	0	.	69
EHD4	30844	bcgsc.ca	37	15	42211487	42211487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EHD4	NM_139265	exon4	c.T845C	p.F282S	.	.	102	5	64	0	.	92
EI24	9538	hgsc.bcm.edu	37	11	125452300	125452300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EI24	NM_001007277	exon9	c.A732C	p.R244S	.	.	35	0	36	0	.	91
EIF2B3	8891	bcgsc.ca	37	1	45444048	45444048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF2B3	NM_020365	exon3	c.T233C	p.I78T	.	.	161	6	134	0	.	92
EIF3A	8661	broad.mit.edu;bcgsc.ca	37	10	120833382	120833382	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF3A	NM_003750	exon2	c.117delA	p.K39fs	.	.	83	8	109	0	.	226
EIF3A	8661	hgsc.bcm.edu;bcgsc.ca	37	10	120828985	120828985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF3A	NM_003750	exon6	c.A923G	p.K308R	.	.	69	4	93	0	.	226
EIF4G1	1981	bcgsc.ca	37	3	184037534	184037534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF4G1	NM_001194946	exon8	c.C503G	p.T168S	.	.	379	12	333	0	.	344
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu	37	3	184039824	184039824	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF4G1	NM_001194946	exon11	c.1473delC	p.L491fs	.	.	224	16	179	0	.	344
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu	37	1	21181509	21181509	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF4G3	NM_001198801	exon24	c.3335delG	p.G1112fs	.	.	107	10	90	0	.	91
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu	37	1	21306905	21306905	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF4G3	NM_001198803	exon10	c.280delC	p.Q94fs	.	.	193	12	119	0	.	91
ELL2	22936	hgsc.bcm.edu	37	5	95226880	95226880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ELL2	NM_012081	exon10	c.A1688G	p.E563G	.	.	150	5	143	0	.	90
EMC10	284361	hgsc.bcm.edu;broad.mit.edu	37	19	50984201	50984201	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_175063	exon6	c.645delC	p.N215fs	.	.	174	12	141	0	.	.
EMILIN1	11117	bcgsc.ca	37	2	27305253	27305253	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EMILIN1	NM_007046	exon4	c.814delG	p.G272fs	.	.	40	4	73	0	.	91
EML3	256364	hgsc.bcm.edu;broad.mit.edu	37	11	62379012	62379012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EML3	NM_153265	exon2	c.79delG	p.E27fs	.	.	261	17	119	0	.	91
EML4	27436	hgsc.bcm.edu	37	2	42544610	42544610	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EML4	NM_019063	exon19	c.C2100T	p.Y700Y	.	.	98	4	88	0	.	3734
EML5	161436	hgsc.bcm.edu	37	14	89206909	89206909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EML5	NM_183387	exon5	c.G533A	p.S178N	.	.	121	2	116	0	.	93
EML5	161436	hgsc.bcm.edu;broad.mit.edu	37	14	89087164	89087164	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EML5	NM_183387	exon38	c.5309delT	p.L1770fs	.	.	204	14	172	0	.	93
ENOPH1	58478	hgsc.bcm.edu	37	4	83352029	83352029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENOPH1	NM_021204	exon1	c.A47G	p.D16G	.	.	85	4	73	0	.	22
ENPEP	2028	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111409837	111409837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENPEP	NM_001977	exon2	c.C785T	p.A262V	.	.	32	18	57	0	.	157
ENTPD5	957	hgsc.bcm.edu;broad.mit.edu	37	14	74443074	74443074	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENTPD5	NM_001249	exon9	c.595delG	p.D199fs	.	.	148	10	109	0	.	91
ENTPD5	957	hgsc.bcm.edu;broad.mit.edu	37	14	74453565	74453565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENTPD5	NM_001249	exon5	c.249delT	p.F83fs	.	.	201	13	163	0	.	91
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu	37	20	25187773	25187773	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENTPD6	NM_001247	exon3	c.116delG	p.R39fs	.	.	129	10	100	0	.	90
EP400NL	347918	bcgsc.ca	37	12	132593257	132593257	+	RNA	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	41	4	83	0	.	.
EP400NL	347918	broad.mit.edu;bcgsc.ca	37	12	132588687	132588687	+	RNA	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	53	7	105	0	.	.
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu	37	5	111545590	111545590	+	Frame_Shift_Del	DEL	T	T	-	rs34402942		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPB41L4A	NM_022140	exon13	c.1177delA	p.S393fs	.	.	152	10	89	0	.	91
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu	37	1	38184055	38184055	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	EPHA10,NS,carcinoma,0	EPHA10	NM_001099439	exon17	c.3016delG	p.V1006fs	.	.	230	15	170	0	.	1246
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu	37	1	38185112	38185112	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA10	NM_001099439	exon15	c.2730delC	p.P910fs	.	.	218	13	186	0	.	1246
EPHA2	1969	hgsc.bcm.edu	37	1	16475439	16475439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA2	NM_004431	exon3	c.T257C	p.V86A	.	.	121	5	105	0	.	1419
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu	37	3	89259454	89259454	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA3	NM_005233	exon3	c.598delA	p.K200fs	.	.	283	17	204	0	.	1500
EPHA6	285220	bcgsc.ca	37	3	97251231	97251231	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA6	NM_001080448	exon11	c.T2230C	p.L744L	.	.	173	6	167	0	.	1561
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu	37	6	94120235	94120235	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA7	NM_004440	exon3	c.816delA	p.K272fs	.	.	167	13	143	0	.	1453
EPS15L1	58513	hgsc.bcm.edu	37	19	16524615	16524615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPS15L1	NM_021235	exon13	c.A1235G	p.E412G	.	.	212	3	214	0	.	95
EPS8L1	54869	hgsc.bcm.edu;broad.mit.edu	37	19	55594991	55594991	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPS8L1	NM_133180	exon14	c.1364delC	p.A455fs	.	.	134	10	92	0	.	115
ERAP1	51752	hgsc.bcm.edu	37	5	96130756	96130756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERAP1	NM_001198541	exon5	c.T908C	p.L303P	.	.	117	4	77	0	.	70
ERBB2	2064	hgsc.bcm.edu	37	17	37868282	37868282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERBB2	NM_004448	exon8	c.A1003G	p.S335G	.	.	89	2	92	0	.	9959
ERBB4	2066	hgsc.bcm.edu	37	2	212537944	212537944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERBB4	NM_001042599	exon14	c.A1661G	p.E554G	.	.	109	4	80	0	.	1461
ERCC1	2067	hgsc.bcm.edu;broad.mit.edu	37	19	45916842	45916842	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERCC1	NM_202001	exon8	c.936delA	p.K312fs	.	.	167	10	133	0	.	659
ERG	2078	broad.mit.edu;bcgsc.ca	37	21	39772564	39772564	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERG	NM_001243432	exon8	c.698delG	p.G233fs	.	.	64	7	80	0	.	848
ERI1	90459	hgsc.bcm.edu;bcgsc.ca	37	8	8875834	8875834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERI1	NM_153332	exon5	c.C610T	p.P204S	.	.	67	4	114	0	.	68
ERMP1	79956	hgsc.bcm.edu	37	9	5805053	5805053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERMP1	NM_024896	exon10	c.T1888C	p.C630R	.	.	77	3	105	0	.	69
ESCO2	157570	hgsc.bcm.edu;bcgsc.ca	37	8	27634369	27634369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESCO2	NM_001017420	exon3	c.T544C	p.C182R	.	.	54	4	50	0	.	90
ESF1	51575	hgsc.bcm.edu;broad.mit.edu	37	20	13695562	13695562	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESF1	NM_001276380	exon14	c.2515delA	p.T839fs	.	.	152	10	97	0	.	91
ESX1	80712	bcgsc.ca	37	X	103495557	103495557	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESX1	NM_153448	exon4	c.A573G	p.R191R	.	.	46	4	31	0	.	131
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu	37	12	56525317	56525317	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESYT1	NM_015292	exon6	c.771delG	p.V257fs	.	.	196	12	170	0	.	95
EVC2	132884	hgsc.bcm.edu	37	4	5664909	5664909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EVC2	NM_147127	exon9	c.A1070G	p.D357G	.	.	87	3	84	0	.	155
EXD3	54932	hgsc.bcm.edu;broad.mit.edu	37	9	140268006	140268006	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXD3	NM_017820	exon4	c.166delC	p.L56fs	.	.	183	11	152	0	.	90
EXOC2	55770	hgsc.bcm.edu;bcgsc.ca	37	6	556010	556010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXOC2	NM_018303	exon19	c.T1936C	p.F646L	.	.	116	5	94	0	.	662
EXOC6	54536	hgsc.bcm.edu	37	10	94688164	94688164	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXOC6	NM_019053	exon9	c.A957G	p.Q319Q	.	.	60	4	81	0	.	91
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu	37	17	74099763	74099763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXOC7	NM_001145298	exon1	c.11delC	p.P4fs	.	.	171	12	105	0	.	90
EYS	346007	hgsc.bcm.edu	37	6	66204564	66204564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EYS	NM_001142801	exon4	c.C740T	p.P247L	.	.	73	4	62	0	.	660
EZH2	2146	hgsc.bcm.edu;broad.mit.edu	37	7	148515025	148515025	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EZH2	NM_004456	exon10	c.1184delG	p.G395fs	.	.	340	23	192	0	.	3699
F2RL1	2150	bcgsc.ca	37	5	76129056	76129056	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	F2RL1	NM_005242	exon2	c.T624C	p.P208P	.	.	535	13	413	0	.	226
F3	2152	bcgsc.ca	37	1	95001601	95001601	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	F3	NM_001993	exon3	c.C332G	p.P111R	.	.	173	6	120	0	.	90
F8	2157	hgsc.bcm.edu	37	X	154088732	154088732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	F8	NM_000132	exon25	c.T6875C	p.L2292P	.	.	77	3	72	0	.	182
F8	2157	hgsc.bcm.edu	37	X	154157276	154157276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	F8	NM_000132	exon14	c.G4789A	p.E1597K	.	.	136	3	116	0	.	182
FADS6	283985	hgsc.bcm.edu	37	17	72889649	72889649	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FADS6	NM_178128	exon1	c.G45T	p.P15P	.	.	103	10	75	0	.	22
FAM115C	285966	broad.mit.edu;bcgsc.ca	37	7	143400355	143400355	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM115C	NM_173678	exon2	c.268delG	p.G90fs	.	.	564	15	354	0	.	68
FAM155A	728215	hgsc.bcm.edu	37	13	108518727	108518727	+	Missense_Mutation	SNP	T	T	C	rs80103752	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM155A	NM_001080396	exon1	c.A218G	p.Q73R	.	.	29	4	35	0	T|0.971;C|0.029	23
FAM160B1	57700	bcgsc.ca	37	10	116581854	116581854	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM160B1	NM_020940	exon1	c.17delC	p.T6fs	.	.	23	3	64	0	.	91
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu	37	2	62067256	62067256	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM161A	NM_032180	exon3	c.883delC	p.L295fs	.	.	157	11	155	0	.	136
FAM170A	340069	bcgsc.ca	37	5	118969961	118969961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM170A	NM_182761	exon3	c.C518T	p.P173L	.	.	150	5	138	0	.	91
FAM170A	340069	hgsc.bcm.edu;broad.mit.edu	37	5	118969957	118969957	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM170A	NM_182761	exon3	c.514delC	p.P172fs	.	.	146	10	133	0	.	91
FAM171B	165215	hgsc.bcm.edu	37	2	187559029	187559029	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM171B	NM_177454	exon1	c.A129G	p.Q43Q	.	.	88	7	75	0	.	141
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu	37	12	50746097	50746097	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM186A	NM_001145475	exon4	c.4518delT	p.L1506fs	.	.	173	11	128	0	.	68
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu	37	12	50747194	50747194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM186A	NM_001145475	exon4	c.3421delC	p.Q1141fs	.	.	149	11	104	0	.	68
FAM193A	8603	hgsc.bcm.edu;broad.mit.edu	37	4	2733569	2733569	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM193A	NM_001256666	exon20	c.3772delA	p.K1258fs	.	.	83	10	48	0	.	93
FAM194A	131831	hgsc.bcm.edu;broad.mit.edu	37	3	150421477	150421477	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM194A	NM_152394	exon1	c.209delC	p.P70fs	.	.	183	11	175	0	.	93
FAM200B	285550	hgsc.bcm.edu;broad.mit.edu	37	4	15689819	15689819	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001145191	exon2	c.1219delT	p.F407fs	.	.	157	10	136	0	.	.
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu	37	3	56657450	56657450	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_015224	exon17	c.3317delA	p.K1106fs	.	.	131	10	112	0	.	.
FAM221B	392307	hgsc.bcm.edu;broad.mit.edu	37	9	35825746	35825746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001012446	exon2	c.413delC	p.P138fs	.	.	143	11	110	0	.	.
FAM45A	404636	bcgsc.ca	37	10	120896028	120896028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM45A	NM_207009	exon9	c.T943A	p.F315I	.	.	417	11	473	0	.	91
FAM45B	55855	bcgsc.ca	37	10	120897216	120897216	+	RNA	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM45B	.	.	.	.	.	.	116	11	133	0	.	63
FAM47E-STBD1	0	broad.mit.edu;bcgsc.ca	37	4	77184964	77184964	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001242939	exon3	c.528delA	p.L176fs	.	.	112	12	112	0	.	.
FAM83G	644815	hgsc.bcm.edu	37	17	18874685	18874685	+	Missense_Mutation	SNP	C	C	T	rs75294421		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM83G	NM_001039999	exon6	c.G2459A	p.R820H	.	.	71	0	40	0	.	69
FANCD2	2177	hgsc.bcm.edu	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FANCD2	NM_001018115	exon26	c.A2391G	p.V797V	.	.	62	7	48	0	A|0.909;G|0.091	229
FANCD2	2177	hgsc.bcm.edu	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FANCD2	NM_001018115	exon26	c.G2406T	p.Q802H	.	.	64	5	58	0	G|0.990;T|0.010	229
FANCM	57697	hgsc.bcm.edu	37	14	45654537	45654537	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FANCM	NM_020937	exon18	c.4633delT	p.F1545fs	.	.	191	13	157	0	.	569
FARP2	9855	hgsc.bcm.edu	37	2	242373660	242373660	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FARP2	NM_014808	exon10	c.955delT	p.F319fs	.	.	173	12	120	0	.	93
FARSA	2193	hgsc.bcm.edu;broad.mit.edu	37	19	13033615	13033615	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FARSA	NM_004461	exon13	c.1474delC	p.L492fs	.	.	170	11	114	0	.	91
FAS	355	bcgsc.ca	37	10	90771819	90771819	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAS	NM_152872	exon7	c.632delA	p.E211fs	.	.	49	5	69	0	.	847
FASTKD1	79675	hgsc.bcm.edu	37	2	170387133	170387133	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FASTKD1	NM_024622	exon14	c.2406delA	p.K802fs	.	.	287	20	232	0	.	119
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu	37	5	7867769	7867769	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FASTKD3	NM_024091	exon2	c.428delA	p.K143fs	.	.	229	14	199	0	.	156
FAT1	2195	bcgsc.ca	37	4	187519207	187519207	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAT1	NM_005245	exon23	c.A12176C	p.K4059T	.	.	124	5	189	2	.	34
FAT1	2195	bcgsc.ca	37	4	187627793	187627793	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAT1	NM_005245	exon2	c.C3189G	p.A1063A	.	.	134	5	162	0	.	34
FBRSL1	57666	hgsc.bcm.edu	37	12	133102379	133102379	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBRSL1	NM_001142641	exon3	c.A549G	p.E183E	.	.	75	4	101	0	.	70
FBXL12	54850	hgsc.bcm.edu;broad.mit.edu	37	19	9922291	9922291	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXL12	NM_017703	exon3	c.262delC	p.Q88fs	.	.	176	11	120	0	.	227
FBXL18	80028	hgsc.bcm.edu;broad.mit.edu	37	7	5540757	5540757	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXL18	NM_024963	exon3	c.1143delC	p.S381fs	.	.	154	10	171	0	.	651
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu	37	1	224345442	224345442	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXO28	NM_015176	exon5	c.1101delA	p.R367fs	.	.	125	10	51	0	.	661
FBXO34	55030	hgsc.bcm.edu;broad.mit.edu	37	14	55817580	55817580	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXO34	NM_017943	exon2	c.472delA	p.K158fs	.	.	157	11	122	0	.	228
FBXO36	130888	hgsc.bcm.edu;broad.mit.edu	37	2	230861591	230861591	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXO36	NM_174899	exon3	c.T330C	p.D110D	.	.	225	3	165	0	.	227
FBXO4	26272	hgsc.bcm.edu;broad.mit.edu	37	5	41927229	41927229	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXO4	NM_033484	exon2	c.304delT	p.F102fs	.	.	195	12	135	0	.	227
FCER1A	2205	hgsc.bcm.edu;broad.mit.edu	37	1	159275825	159275825	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FCER1A	NM_002001	exon5	c.379delC	p.P127fs	.	.	200	12	123	0	.	524
FCHO1	23149	hgsc.bcm.edu	37	19	17897403	17897403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FCHO1	NM_001161358	exon26	c.T2447C	p.L816P	.	.	89	4	49	0	.	90
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	125029888	125029888	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FER1L6	NM_001039112	exon16	c.1943delA	p.E648fs	.	.	101	11	104	0	.	100
FGD6	55785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	95501402	95501402	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FGD6	NM_018351	exon12	c.3270delT	p.F1090fs	.	.	128	13	110	0	.	137
FHAD1	114827	hgsc.bcm.edu	37	1	15615974	15615974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FHAD1	NM_052929	exon4	c.380delC	p.A127fs	.	.	159	11	163	0	.	69
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu	37	18	34335198	34335198	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FHOD3	NM_025135	exon22	c.3824delA	p.E1275fs	.	.	155	10	135	0	.	139
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu	37	6	76124421	76124421	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FILIP1	NM_015687	exon2	c.268delG	p.E90fs	.	.	143	10	112	0	.	94
FKBP10	60681	hgsc.bcm.edu;broad.mit.edu	37	17	39977311	39977311	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FKBP10	NM_021939	exon8	c.1369delC	p.P457fs	.	.	184	15	136	0	.	227
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu	37	9	115931867	115931867	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FKBP15	NM_015258	exon26	c.3122delC	p.P1041fs	.	.	203	13	148	0	.	25
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu	37	12	2907011	2907011	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FKBP4	NM_002014	exon3	c.367delC	p.P123fs	.	.	158	11	155	0	.	226
FKBP5	2289	hgsc.bcm.edu;broad.mit.edu	37	6	35587912	35587912	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FKBP5	NM_001145775	exon5	c.390delT	p.F130fs	.	.	140	11	105	0	.	227
FLJ35390	0	ucsc.edu	37	7	44078881	44078881	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	54	11	25	0	.	.
FMN2	56776	hgsc.bcm.edu	37	1	240255568	240255568	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FMN2	NM_020066	exon1	c.G159A	p.G53G	.	.	74	2	64	0	.	145
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu	37	5	169533034	169533034	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FOXI1	NM_012188	exon1	c.73delC	p.P25fs	.	.	296	18	297	0	.	229
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4798978	4798978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FOXK1	NM_001037165	exon7	c.T1448C	p.V483A	.	.	30	4	68	0	.	516
FOXN4	121643	hgsc.bcm.edu;broad.mit.edu	37	12	109725737	109725737	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FOXN4	NM_213596	exon5	c.380delG	p.G127fs	.	.	183	11	139	0	.	227
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu	37	1	74930365	74930365	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001199327	exon24	c.2471delA	p.E824fs	.	.	120	10	105	0	.	.
FRAS1	80144	hgsc.bcm.edu	37	4	79239975	79239975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FRAS1	NM_001166133	exon18	c.T1972C	p.S658P	.	.	126	4	97	0	.	68
FREM1	158326	hgsc.bcm.edu	37	9	14737508	14737508	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FREM1	NM_144966	exon38	c.T6426C	p.S2142S	.	.	93	4	133	0	.	138
FRG1B	284802	bcgsc.ca	37	20	29624035	29624035	+	RNA	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FRG1B	.	.	.	.	.	.	301	33	180	1	.	22
FSIP1	161835	hgsc.bcm.edu	37	15	40031895	40031895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FSIP1	NM_152597	exon7	c.A751G	p.N251D	.	.	119	5	119	0	.	517
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu	37	5	132553042	132553042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FSTL4	NM_015082	exon13	c.1487delA	p.N496fs	.	.	170	11	151	0	.	91
FTSJ2	29960	hgsc.bcm.edu;broad.mit.edu	37	7	2274931	2274931	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FTSJ2	NM_013393	exon3	c.567delG	p.G189fs	.	.	180	17	156	0	.	91
FTSJD1	55783	bcgsc.ca	37	16	71319336	71319336	+	Missense_Mutation	SNP	A	A	G	rs17853360	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FTSJD1	NM_018348	exon3	c.T488C	p.F163S	.	.	144	5	113	0	A|1.000;|0.000	91
FZD5	7855	bcgsc.ca	37	2	208631726	208631726	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FZD5	NM_003468	exon2	c.1738delG	p.V580fs	.	.	43	4	69	0	.	660
FZD6	8323	hgsc.bcm.edu;broad.mit.edu	37	8	104330820	104330820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FZD6	NM_003506	exon3	c.180delT	p.H60fs	.	.	125	11	87	0	.	658
FZD8	8325	hgsc.bcm.edu;broad.mit.edu	37	10	35929138	35929138	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FZD8	NM_031866	exon1	c.1220delG	p.G407fs	.	.	117	10	61	0	.	612
GAB1	2549	hgsc.bcm.edu	37	4	144361320	144361320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GAB1	NM_207123	exon6	c.G1370A	p.R457Q	.	.	160	6	195	0	.	1146
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu	37	X	151820189	151820189	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GABRQ	NM_018558	exon8	c.1102delC	p.P368fs	.	.	109	11	79	0	.	133
GALNT9	50614	bcgsc.ca	37	12	132682482	132682482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GALNT9	NM_001122636	exon10	c.G1520C	p.G507A	.	.	150	8	198	0	.	90
GAMT	2593	hgsc.bcm.edu;broad.mit.edu	37	19	1398959	1398959	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GAMT	NM_138924	exon5	c.526delG	p.E176fs	.	.	286	20	198	0	.	90
GARNL3	84253	hgsc.bcm.edu	37	9	130087373	130087373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GARNL3	NM_032293	exon7	c.A593G	p.E198G	.	.	97	4	74	0	.	516
GARNL3	84253	hgsc.bcm.edu;broad.mit.edu	37	9	130107748	130107748	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GARNL3	NM_032293	exon16	c.1423delA	p.K475fs	.	.	163	13	142	0	.	516
GARNL3	84253	hgsc.bcm.edu;broad.mit.edu	37	9	130116628	130116628	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GARNL3	NM_032293	exon19	c.1698delG	p.E566fs	.	.	158	10	126	0	.	516
GAS2L3	283431	hgsc.bcm.edu;broad.mit.edu	37	12	101017470	101017470	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GAS2L3	NM_174942	exon10	c.887delA	p.Q296fs	.	.	188	11	149	0	.	227
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu	37	19	19609429	19609429	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GATAD2A	NM_017660	exon8	c.1102delC	p.P368fs	.	.	281	17	212	0	.	90
GBA2	57704	bcgsc.ca	37	9	35741026	35741026	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBA2	NM_020944	exon5	c.T822C	p.D274D	.	.	154	6	135	0	.	94
GBF1	8729	hgsc.bcm.edu	37	10	104128552	104128552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBF1	NM_001199378	exon23	c.T2936C	p.I979T	.	.	80	3	153	0	.	91
GBP5	115362	hgsc.bcm.edu;bcgsc.ca	37	1	89729600	89729600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBP5	NM_052942	exon9	c.G1181T	p.C394F	.	.	94	9	68	0	.	91
GBP6	163351	hgsc.bcm.edu;bcgsc.ca	37	1	89847413	89847413	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBP6	NM_198460	exon7	c.C1032T	p.L344L	.	.	221	9	173	0	.	92
GCNT2	2651	bcgsc.ca	37	6	10587039	10587039	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GCNT2	NM_145655	exon1	c.T817G	p.F273V	.	.	315	7	189	0	.	92
GCSAM	257144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111842506	111842506	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001190259	exon6	c.C339T	p.P113P	.	.	272	90	217	0	.	.
GFM2	84340	hgsc.bcm.edu	37	5	74021852	74021852	+	Missense_Mutation	SNP	A	A	T	rs76339998	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GFM2	NM_032380	exon18	c.T1826A	p.F609Y	.	.	126	8	74	0	A|0.963;T|0.037	90
GFPT2	9945	hgsc.bcm.edu	37	5	179762947	179762947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GFPT2	NM_005110	exon4	c.A221G	p.D74G	.	.	176	4	131	0	.	92
GIMAP2	26157	hgsc.bcm.edu;broad.mit.edu	37	7	150390266	150390266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GIMAP2	NM_015660	exon3	c.892delT	p.F298fs	.	.	156	10	83	0	.	91
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu	37	11	134152001	134152001	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLB1L3	NM_001080407	exon5	c.514delG	p.G172fs	.	.	203	14	143	0	.	69
GLI1	2735	hgsc.bcm.edu;bcgsc.ca	37	12	57857530	57857530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI1	NM_005269	exon2	c.T56C	p.L19P	.	.	53	4	48	0	.	722
GLI3	2737	bcgsc.ca	37	7	42088223	42088223	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI3	NM_000168	exon5	c.C546G	p.P182P	.	.	219	7	230	0	.	1149
GLI3	2737	hgsc.bcm.edu;broad.mit.edu	37	7	42006102	42006102	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI3	NM_000168	exon15	c.2569delG	p.A857fs	.	.	155	10	146	0	.	1149
GLI3	2737	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42012094	42012094	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI3	NM_000168	exon13	c.C1945A	p.R649R	.	.	190	79	129	0	.	1149
GLIS2	84662	hgsc.bcm.edu	37	16	4385330	4385330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLIS2	NM_032575	exon5	c.T711C	p.C237C	.	.	163	5	153	0	.	90
GLRX2	51022	hgsc.bcm.edu;broad.mit.edu	37	1	193066820	193066820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLRX2	NM_016066	exon3	c.257delA	p.K86fs	.	.	189	12	114	0	.	186
GLS2	27165	hgsc.bcm.edu;broad.mit.edu	37	12	56867277	56867277	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLS2	NM_013267	exon13	c.1326delG	p.G442fs	.	.	115	10	70	0	.	91
GMPPA	29926	hgsc.bcm.edu;broad.mit.edu	37	2	220369963	220369963	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GMPPA	NM_205847	exon8	c.634delG	p.G212fs	.	.	166	11	144	0	.	90
GNPAT	8443	hgsc.bcm.edu;broad.mit.edu	37	1	231403484	231403484	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GNPAT	NM_014236	exon9	c.1114delA	p.K372fs	.	.	148	10	73	0	.	156
GNPNAT1	64841	hgsc.bcm.edu;broad.mit.edu	37	14	53250196	53250196	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GNPNAT1	NM_198066	exon3	c.162delT	p.F54fs	.	.	303	19	259	0	.	90
GNPTAB	79158	hgsc.bcm.edu	37	12	102155033	102155033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GNPTAB	NM_024312	exon15	c.A3007G	p.S1003G	.	.	94	2	67	0	.	92
GOLGA6D	653643	broad.mit.edu;bcgsc.ca	37	15	75586689	75586689	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001145224	exon18	c.1955delT	p.V652fs	.	.	358	13	349	0	.	.
GOLGA7B	401647	hgsc.bcm.edu	37	10	99619216	99619216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GOLGA7B	NM_001010917	exon2	c.T14C	p.V5A	.	.	69	3	77	0	.	90
GOLGB1	2804	hgsc.bcm.edu	37	3	121416461	121416461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GOLGB1	NM_001256486	exon13	c.A2909G	p.E970G	.	.	57	2	58	0	.	161
GOSR1	9527	hgsc.bcm.edu;broad.mit.edu	37	17	28849276	28849276	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GOSR1	NM_004871	exon9	c.633delT	p.R211fs	.	.	179	12	148	0	.	90
GP1BA	2811	hgsc.bcm.edu;broad.mit.edu	37	17	4837373	4837373	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_000173	exon2	c.1474delA	p.K492fs	.	.	205	13	126	0	.	.
GP6	51206	hgsc.bcm.edu	37	19	55525586	55525586	+	Missense_Mutation	SNP	C	C	T	rs10418074	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GP6	NM_001083899	exon8	c.G1727A	p.R576K	.	.	7	4	0	0	C|0.927;T|0.073	92
GPATCH3	63906	hgsc.bcm.edu;broad.mit.edu	37	1	27223996	27223996	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPATCH3	NM_022078	exon2	c.672delC	p.P224fs	.	.	180	11	103	0	.	90
GPATCH4	54865	hgsc.bcm.edu	37	1	156565049	156565049	+	Missense_Mutation	SNP	A	A	C	rs77528517	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPATCH4	NM_015590	exon8	c.T1084G	p.F362V	.	.	434	7	354	0	A|0.333;C|0.333;G|0.333	91
GPC4	2239	hgsc.bcm.edu	37	X	132438856	132438856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPC4	NM_001448	exon7	c.A1189G	p.K397E	.	.	86	4	76	0	.	226
GPC5	2262	hgsc.bcm.edu	37	13	92345688	92345688	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPC5	NM_004466	exon3	c.A573G	p.S191S	.	.	74	3	85	0	.	519
GPC5	2262	hgsc.bcm.edu	37	13	92797194	92797194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPC5	NM_004466	exon7	c.1513delG	p.G505fs	.	.	162	10	171	0	.	519
GPC5	2262	hgsc.bcm.edu;broad.mit.edu	37	13	92345489	92345489	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPC5	NM_004466	exon3	c.374delT	p.L125fs	.	.	167	10	162	0	.	519
GPCPD1	56261	hgsc.bcm.edu	37	20	5550794	5550794	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPCPD1	NM_019593	exon12	c.1148delA	p.K383fs	.	.	280	17	128	0	.	90
GPCPD1	56261	hgsc.bcm.edu	37	20	5560674	5560674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPCPD1	NM_019593	exon7	c.453delA	p.K151fs	.	.	202	13	105	0	.	90
GPCPD1	56261	hgsc.bcm.edu;broad.mit.edu	37	20	5559030	5559030	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPCPD1	NM_019593	exon8	c.701delT	p.F234fs	.	.	207	13	136	0	.	90
GPKOW	27238	hgsc.bcm.edu;broad.mit.edu	37	X	48970804	48970804	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPKOW	NM_015698	exon10	c.1283delC	p.P428fs	.	.	158	10	103	0	.	132
GPR114	221188	hgsc.bcm.edu;broad.mit.edu	37	16	57597883	57597883	+	Frame_Shift_Del	DEL	T	T	-	rs35837636		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPR114	NM_153837	exon5	c.421delT	p.F141fs	.	.	174	13	132	0	.	90
GPR174	84636	hgsc.bcm.edu	37	X	78427231	78427231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPR174	NM_032553	exon1	c.T727C	p.F243L	.	.	86	4	101	0	.	130
GPR31	2853	hgsc.bcm.edu	37	6	167571153	167571153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPR31	NM_005299	exon1	c.T167C	p.L56P	.	.	151	2	196	0	.	90
GPR63	81491	hgsc.bcm.edu;broad.mit.edu	37	6	97246738	97246738	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPR63	NM_030784	exon2	c.870delA	p.K290fs	.	.	126	10	104	0	.	92
GPX6	257202	bcgsc.ca	37	6	28483483	28483483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPX6	.	.	.	.	.	.	118	5	103	0	.	95
GRAMD1C	54762	hgsc.bcm.edu;broad.mit.edu	37	3	113595052	113595052	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GRAMD1C	NM_017577	exon5	c.404delA	p.E135fs	.	.	198	12	166	0	.	93
GREB1L	80000	hgsc.bcm.edu	37	18	19100763	19100763	+	Missense_Mutation	SNP	A	A	C	rs201565664		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001142966	exon32	c.A5587C	p.K1863Q	.	.	88	6	89	0	.	.
GRIA3	2892	hgsc.bcm.edu	37	X	122318388	122318388	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GRIA3	NM_000828	exon1	c.A1C	p.M1L	.	.	122	5	110	0	.	134
GRIA3	2892	hgsc.bcm.edu	37	X	122336599	122336599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GRIA3	NM_001256743	exon3	c.G380T	p.G127V	.	.	92	7	58	0	.	134
GRIA3	2892	hgsc.bcm.edu	37	X	122336604	122336604	+	Missense_Mutation	SNP	C	C	G	rs72609489		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GRIA3	NM_001256743	exon3	c.C385G	p.P129A	.	.	88	16	53	0	.	134
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu	37	X	122528855	122528855	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GRIA3	NM_000828	exon6	c.787delG	p.G263fs	.	.	203	12	156	0	.	134
GSS	2937	hgsc.bcm.edu	37	20	33530430	33530430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GSS	NM_000178	exon5	c.A352G	p.T118A	.	.	117	4	79	0	.	93
GSTZ1	2954	hgsc.bcm.edu	37	14	77797449	77797449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GSTZ1	NM_145870	exon9	c.T562C	p.S188P	.	.	136	6	114	0	.	90
GTF2IRD2B	389524	broad.mit.edu;bcgsc.ca	37	7	74564270	74564270	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GTF2IRD2B	NM_001003795	exon16	c.2017delG	p.V673fs	.	.	1464	21	676	0	.	45
GTF2IRD2P1	401375	broad.mit.edu	37	7	72664009	72664009	+	RNA	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	523	22	70	1	.	.
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	659	227	130	0	T|0.500;G|0.500	.
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72664010	72664010	+	RNA	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	514	52	67	0	.	.
GTF2IRD2P1	401375	bcgsc.ca	37	7	72664015	72664015	+	RNA	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	480	10	47	0	.	.
GTF3C1	2975	hgsc.bcm.edu	37	16	27503691	27503691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GTF3C1	NM_001520	exon19	c.A3119G	p.D1040G	.	.	170	3	115	0	.	94
GYS2	2998	hgsc.bcm.edu;bcgsc.ca	37	12	21692268	21692268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GYS2	NM_021957	exon15	c.A1814G	p.Y605C	.	.	89	4	101	0	.	523
GZMM	3004	hgsc.bcm.edu;broad.mit.edu	37	19	549133	549133	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GZMM	NM_005317	exon4	c.560delC	p.S187fs	.	.	158	10	141	0	.	90
HADHA	3030	hgsc.bcm.edu	37	2	26426951	26426951	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HADHA	NM_000182	exon12	c.A1200G	p.G400G	.	.	164	2	112	0	.	91
HAGHL	84264	hgsc.bcm.edu;broad.mit.edu	37	16	777988	777988	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HAGHL	NM_032304	exon2	c.129delG	p.E43fs	.	.	248	15	219	0	.	90
HAPLN1	1404	bcgsc.ca	37	5	82940274	82940274	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HAPLN1	NM_001884	exon4	c.G683C	p.G228A	.	.	216	9	198	0	.	580
HAUS6	54801	broad.mit.edu;bcgsc.ca	37	9	19082998	19082998	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HAUS6	NM_017645	exon8	c.743delT	p.L248fs	.	.	226	10	282	0	.	92
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu	37	9	19094365	19094365	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HAUS6	NM_017645	exon3	c.253delA	p.S85fs	.	.	214	13	281	0	.	92
HBS1L	10767	hgsc.bcm.edu	37	6	135358603	135358603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HBS1L	NM_001145207	exon5	c.A992G	p.E331G	.	.	137	6	106	0	.	92
HCFC2	29915	hgsc.bcm.edu;broad.mit.edu	37	12	104490206	104490206	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HCFC2	NM_013320	exon12	c.1735delT	p.F579fs	.	.	158	10	173	0	.	92
HCFC2	29915	hgsc.bcm.edu;broad.mit.edu	37	12	104495863	104495863	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HCFC2	NM_013320	exon14	c.1996delA	p.K666fs	.	.	167	11	163	0	.	92
HCN1	348980	hgsc.bcm.edu;broad.mit.edu	37	5	45262631	45262631	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HCN1	NM_021072	exon8	c.2065delC	p.Q689fs	.	.	183	11	161	0	.	91
HDAC4	9759	hgsc.bcm.edu	37	2	240274391	240274391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDAC4	NM_006037	exon2	c.A4G	p.S2G	.	.	110	4	88	0	.	291
HDC	3067	hgsc.bcm.edu	37	15	50534669	50534669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDC	NM_002112	exon12	c.A1777G	p.S593G	.	.	105	5	101	0	.	156
HDC	3067	hgsc.bcm.edu;broad.mit.edu	37	15	50549687	50549687	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDC	NM_002112	exon4	c.376delA	p.M126fs	.	.	165	16	110	0	.	156
HDDC2	51020	hgsc.bcm.edu;broad.mit.edu	37	6	125621689	125621689	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDDC2	NM_016063	exon2	c.201delA	p.K67fs	.	.	181	11	156	0	.	90
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu	37	2	242194991	242194991	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDLBP	NM_005336	exon8	c.878delA	p.K293fs	.	.	213	13	116	0	.	290
HEATR1	55127	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	236750749	236750749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEATR1	NM_018072	exon14	c.T1668A	p.N556K	.	.	266	135	185	0	.	93
HEATR3	55027	hgsc.bcm.edu;broad.mit.edu	37	16	50106592	50106592	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEATR3	NM_182922	exon5	c.589delT	p.F197fs	.	.	156	11	160	0	.	92
HECTD1	25831	hgsc.bcm.edu	37	14	31576779	31576779	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HECTD1	NM_015382	exon37	c.T6612C	p.S2204S	.	.	55	3	55	0	.	570
HECTD4	283450	hgsc.bcm.edu	37	12	112703054	112703054	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001109662	exon16	c.A2112G	p.R704R	.	.	93	2	74	0	.	.
HELZ2	85441	hgsc.bcm.edu;broad.mit.edu	37	20	62193204	62193204	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001037335	exon12	c.6663delC	p.P2221fs	.	.	139	11	110	0	.	.
HERC6	55008	hgsc.bcm.edu;broad.mit.edu	37	4	89326115	89326115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HERC6	NM_017912	exon9	c.1180delA	p.K394fs	.	.	170	10	133	0	.	658
HES1	3280	hgsc.bcm.edu;broad.mit.edu	37	3	193854479	193854479	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HES1	NM_005524	exon2	c.182delT	p.I61fs	.	.	220	14	158	0	.	659
HEYL	26508	hgsc.bcm.edu;bcgsc.ca	37	1	40105230	40105230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEYL	NM_014571	exon1	c.A68G	p.E23G	.	.	80	4	87	0	.	91
HFM1	164045	hgsc.bcm.edu;broad.mit.edu	37	1	91844032	91844032	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HFM1	NM_001017975	exon10	c.1164delA	p.K388fs	.	.	188	12	131	0	.	112
HGS	9146	hgsc.bcm.edu;broad.mit.edu	37	17	79660963	79660963	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HGS	NM_004712	exon11	c.904delC	p.P302fs	.	.	159	10	117	0	.	91
HIAT1	64645	hgsc.bcm.edu;broad.mit.edu	37	1	100542770	100542770	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIAT1	NM_033055	exon9	c.941delT	p.I314fs	.	.	195	12	132	0	.	90
HIC1	3090	bcgsc.ca	37	17	1961310	1961310	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIC1	NM_001098202	exon2	c.1383delG	p.E461fs	.	.	34	4	66	0	.	135
HIPK1	204851	hgsc.bcm.edu	37	1	114500897	114500897	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIPK1	NM_198268	exon8	c.T1965C	p.C655C	.	.	124	3	99	0	.	361
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu	37	7	139315954	139315954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIPK2	NM_022740	exon4	c.1304delT	p.F435fs	.	.	140	10	64	0	.	785
HIRA	7290	hgsc.bcm.edu;broad.mit.edu	37	22	19346949	19346949	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIRA	NM_003325	exon18	c.2144delG	p.G715fs	.	.	157	10	112	0	.	91
HIST1H1A	3024	hgsc.bcm.edu;broad.mit.edu	37	6	26017448	26017448	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIST1H1A	NM_005325	exon1	c.513delA	p.K171fs	.	.	299	20	246	0	.	92
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu	37	1	42050249	42050249	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIVEP3	NM_024503	exon4	c.220delA	p.T74fs	.	.	182	12	127	0	.	157
HMGB3	3149	hgsc.bcm.edu	37	X	150155773	150155773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HMGB3	NM_005342	exon4	c.A463G	p.K155E	.	.	83	4	54	0	.	226
HMMR	3161	hgsc.bcm.edu;bcgsc.ca	37	5	162891750	162891750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HMMR	NM_012485	exon3	c.T167C	p.V56A	.	.	73	4	65	0	.	90
HMX3	340784	bcgsc.ca	37	10	124896834	124896834	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HMX3	NM_001105574	exon2	c.661delA	p.K221fs	.	.	43	5	71	0	.	68
HNF1B	6928	hgsc.bcm.edu	37	17	36104535	36104535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HNF1B	NM_001165923	exon1	c.T341C	p.L114P	.	.	61	3	47	0	.	71
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	.	.	232	25	170	2	.	68
HNRNPL	3191	hgsc.bcm.edu;broad.mit.edu	37	19	39329068	39329068	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HNRNPL	NM_001533	exon10	c.1526delC	p.P509fs	.	.	151	10	139	0	.	22
HNRPDL	9987	hgsc.bcm.edu;broad.mit.edu	37	4	83348625	83348625	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HNRPDL	NM_031372	exon4	c.867delA	p.K289fs	.	.	183	12	122	0	.	91
HOMEZ	57594	hgsc.bcm.edu	37	14	23744844	23744844	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HOMEZ	NM_020834	exon2	c.G1593A	p.E531E	.	.	110	9	101	0	.	22
HOMEZ	57594	hgsc.bcm.edu	37	14	23744847	23744847	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HOMEZ	NM_020834	exon2	c.A1590G	p.E530E	.	.	103	5	103	0	.	22
HOOK2	29911	bcgsc.ca	37	19	12883635	12883635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HOOK2	NM_001100176	exon5	c.A347G	p.Q116R	.	.	78	4	61	1	.	92
HRG	3273	hgsc.bcm.edu;bcgsc.ca	37	3	186390578	186390578	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HRG	NM_000412	exon5	c.A561G	p.R187R	.	.	95	5	84	0	.	91
HRG	3273	hgsc.bcm.edu;broad.mit.edu	37	3	186392941	186392941	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HRG	NM_000412	exon6	c.703delA	p.K235fs	.	.	253	17	167	0	.	91
HSF4	3299	hgsc.bcm.edu;broad.mit.edu	37	16	67201727	67201727	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HSF4	NM_001040667	exon11	c.959delC	p.A320fs	.	.	161	13	148	0	.	90
HSP90B1	7184	hgsc.bcm.edu;broad.mit.edu	37	12	104340586	104340586	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HSP90B1	NM_003299	exon16	c.2129delT	p.V710fs	.	.	189	13	123	0	.	93
HSPA6	3310	bcgsc.ca	37	1	161495886	161495886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HSPA6	NM_002155	exon1	c.T1438C	p.F480L	.	.	448	10	248	1	.	226
HTR3E	285242	hgsc.bcm.edu	37	3	183818222	183818222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HTR3E	NM_182589	exon1	c.G62A	p.R21K	.	.	127	7	104	0	.	92
HTR6	3362	hgsc.bcm.edu;broad.mit.edu	37	1	19992674	19992674	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HTR6	NM_000871	exon1	c.428delC	p.A143fs	.	.	194	13	186	0	.	91
IAH1	285148	hgsc.bcm.edu;broad.mit.edu	37	2	9628363	9628363	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IAH1	NM_001039613	exon6	c.652delA	p.K218fs	.	.	160	10	152	0	.	22
IFI44	10561	hgsc.bcm.edu;bcgsc.ca	37	1	79115893	79115893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFI44	NM_006417	exon2	c.A13G	p.T5A	.	.	141	6	117	0	.	91
IFI44L	10964	hgsc.bcm.edu;broad.mit.edu	37	1	79101136	79101136	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFI44L	NM_006820	exon5	c.838delC	p.P280fs	.	.	132	10	103	0	.	90
IFNA2	3440	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	21385289	21385289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFNA2	NM_000605	exon1	c.C40T	p.L14F	.	.	118	67	133	0	.	153
IGDCC4	57722	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	65676554	65676554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGDCC4	NM_020962	exon20	c.G3546T	p.R1182S	.	.	184	62	143	0	.	93
IGF1R	3480	hgsc.bcm.edu	37	15	99434602	99434602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGF1R	NM_000875	exon3	c.G689A	p.C230Y	.	.	93	4	50	0	.	1490
IGHMBP2	3508	bcgsc.ca	37	11	68704265	68704265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGHMBP2	NM_002180	exon13	c.G2317T	p.G773W	.	.	181	6	100	0	.	90
IGSF10	285313	hgsc.bcm.edu;bcgsc.ca	37	3	151176327	151176327	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF10	NM_178822	exon1	c.C171A	p.P57P	.	.	244	17	192	0	.	102
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu	37	X	130417076	130417076	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF1	NM_001555	exon6	c.830delA	p.N277fs	.	.	252	16	229	0	.	133
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu	37	11	18741308	18741308	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF22	NM_173588	exon7	c.651delG	p.G217fs	.	.	191	13	141	0	.	140
IGSF5	150084	hgsc.bcm.edu	37	21	41151128	41151128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF5	NM_001080444	exon5	c.T830C	p.L277P	.	.	94	4	103	0	.	68
IKBKB	3551	hgsc.bcm.edu	37	8	42176819	42176819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IKBKB	NM_001556	exon14	c.T1396C	p.S466P	.	.	87	3	72	0	.	1164
IL10RB	3588	bcgsc.ca	37	21	34638801	34638801	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IL10RB	NM_000628	exon1	c.31delG	p.G11fs	.	.	40	4	104	0	.	90
IL1R2	7850	hgsc.bcm.edu;broad.mit.edu	37	2	102636130	102636130	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IL1R2	NM_001261419	exon5	c.544delA	p.K182fs	.	.	178	11	130	0	.	522
IL1RL1	9173	bcgsc.ca	37	2	102968076	102968076	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IL1RL1	NM_016232	exon11	c.A1366C	p.K456Q	.	.	254	6	232	1	.	517
IL21R	50615	hgsc.bcm.edu;broad.mit.edu	37	16	27441412	27441412	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IL21R	NM_181079	exon3	c.86delC	p.A29fs	.	.	135	10	144	0	.	660
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu	37	3	121712685	121712685	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ILDR1	NM_001199799	exon7	c.911delC	p.P304fs	.	.	158	11	131	0	.	91
IMPACT	55364	hgsc.bcm.edu;broad.mit.edu	37	18	22030773	22030773	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IMPACT	NM_018439	exon11	c.925delA	p.K309fs	.	.	332	20	243	0	.	90
INADL	10207	hgsc.bcm.edu	37	1	62550289	62550289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INADL	NM_176877	exon33	c.T4346C	p.L1449P	.	.	110	3	108	0	.	94
INF2	64423	hgsc.bcm.edu;broad.mit.edu	37	14	105174185	105174185	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INF2	NM_022489	exon8	c.1581delC	p.S527fs	.	.	145	13	132	0	.	492
INO80D	54891	hgsc.bcm.edu;broad.mit.edu	37	2	206892990	206892990	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INO80D	NM_017759	exon6	c.1143delA	p.K381fs	.	.	133	10	117	0	.	91
INPP1	3628	hgsc.bcm.edu	37	2	191233941	191233941	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INPP1	NM_002194	exon5	c.A579G	p.T193T	.	.	145	4	107	0	.	228
INSR	3643	hgsc.bcm.edu;bcgsc.ca	37	19	7152932	7152932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INSR	NM_000208	exon10	c.A2036G	p.K679R	.	.	69	4	58	0	.	1381
INTS10	55174	hgsc.bcm.edu	37	8	19694579	19694579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTS10	NM_018142	exon13	c.T1547C	p.V516A	.	.	96	4	153	0	.	91
INTS2	57508	hgsc.bcm.edu;broad.mit.edu	37	17	59946495	59946495	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTS2	NM_020748	exon23	c.3168delT	p.F1056fs	.	.	160	10	136	0	.	206
INTS4L2	644619	broad.mit.edu	37	7	65150720	65150720	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	156	5	27	0	.	.
INTS8	55656	hgsc.bcm.edu;broad.mit.edu	37	8	95892421	95892421	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTS8	NM_017864	exon27	c.2947delA	p.K983fs	.	.	173	13	142	0	.	90
INTU	27152	hgsc.bcm.edu;bcgsc.ca	37	4	128635178	128635178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTU	NM_015693	exon15	c.T2647C	p.F883L	.	.	65	4	82	0	.	91
INTU	27152	hgsc.bcm.edu;broad.mit.edu	37	4	128564917	128564917	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTU	NM_015693	exon2	c.388delA	p.K130fs	.	.	143	11	158	0	.	91
IQCC	55721	hgsc.bcm.edu;broad.mit.edu	37	1	32671421	32671421	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IQCC	NM_001160042	exon1	c.139delC	p.P47fs	.	.	221	15	165	0	.	94
IQCC	55721	hgsc.bcm.edu;broad.mit.edu	37	1	32673443	32673443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IQCC	NM_001160042	exon5	c.1401delG	p.L467fs	.	.	190	13	137	0	.	94
IQSEC2	23096	hgsc.bcm.edu	37	X	53264288	53264288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IQSEC2	NM_001111125	exon15	c.A3580G	p.S1194G	.	.	68	3	47	0	.	178
IRAK1	3654	hgsc.bcm.edu;broad.mit.edu	37	X	153278528	153278528	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IRAK1	NM_001569	exon12	c.1896delG	p.G632fs	.	.	124	10	86	0	.	1074
ITFG1	81533	hgsc.bcm.edu;broad.mit.edu	37	16	47347686	47347686	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITFG1	NM_030790	exon9	c.851delA	p.N284fs	.	.	146	10	93	0	.	91
ITGA5	3678	hgsc.bcm.edu	37	12	54797420	54797420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGA5	NM_002205	exon17	c.A1765G	p.I589V	.	.	112	4	71	0	.	659
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu	37	3	37845344	37845344	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGA9	NM_002207	exon27	c.2920delC	p.P974fs	.	.	233	17	187	0	.	715
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu	37	16	31308914	31308914	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGAM	NM_000632	exon13	c.1436delC	p.A479fs	.	.	211	13	152	0	.	226
ITGB5	3693	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	124578237	124578237	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGB5	NM_002213	exon3	c.C213T	p.V71V	.	.	226	82	165	0	.	227
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu	37	2	160958277	160958277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGB6	NM_000888	exon15	c.2337delA	p.K779fs	.	.	162	11	135	0	.	227
ITIH2	3698	hgsc.bcm.edu	37	10	7751097	7751097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITIH2	NM_002216	exon4	c.A305G	p.Q102R	.	.	153	3	117	0	.	93
ITIH2	3698	hgsc.bcm.edu	37	10	7780711	7780711	+	Silent	SNP	T	T	C	rs181663875	by1000genomes	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITIH2	NM_002216	exon16	c.T2085C	p.H695H	.	.	100	4	78	0	T|0.999;C|0.000	93
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu	37	10	7605064	7605064	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITIH5	NM_030569	exon15	c.2810delG	p.G937fs	.	.	173	11	173	0	.	92
ITPKB	3707	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226923526	226923526	+	Missense_Mutation	SNP	G	G	A	rs149543375		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITPKB	NM_002221	exon2	c.C1634T	p.P545L	.	.	132	46	72	0	G|1.000;A|0.000	230
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu	37	2	24516590	24516590	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITSN2	NM_147152	exon15	c.1690delA	p.R564fs	.	.	196	14	163	0	.	539
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu	37	5	147021317	147021317	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	JAKMIP2	NM_001270941	exon8	c.1235delA	p.K412fs	.	.	177	12	150	0	.	154
JAZF1	221895	hgsc.bcm.edu;broad.mit.edu	37	7	28220144	28220144	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	JAZF1	NM_175061	exon1	c.53delG	p.G18fs	.	.	188	12	114	0	.	808
JPH4	84502	hgsc.bcm.edu;broad.mit.edu	37	14	24040276	24040276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	JPH4	NM_001146028	exon5	c.1664delC	p.P555fs	.	.	170	11	131	0	.	92
KANSL1	284058	hgsc.bcm.edu;bcgsc.ca	37	17	44109416	44109416	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001193466	exon14	c.A3087G	p.E1029E	.	.	79	4	82	0	.	.
KANSL1L	151050	hgsc.bcm.edu;broad.mit.edu	37	2	210887743	210887743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152519	exon15	c.2894delA	p.K965fs	.	.	241	15	178	0	.	.
KANSL1L	151050	hgsc.bcm.edu;broad.mit.edu	37	2	211018375	211018375	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152519	exon2	c.932delA	p.N311fs	.	.	260	16	207	0	.	.
KATNBL1	79768	hgsc.bcm.edu	37	15	34455865	34455865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_024713	exon2	c.A13G	p.T5A	.	.	82	4	61	0	.	.
KAZALD1	81621	bcgsc.ca	37	10	102824365	102824365	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KAZALD1	NM_030929	exon4	c.T780C	p.G260G	.	.	66	5	87	1	.	90
KCNAB1	7881	hgsc.bcm.edu	37	3	155861084	155861084	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNAB1	NM_003471	exon1	c.T117C	p.P39P	.	.	169	6	110	0	.	94
KCNB2	9312	hgsc.bcm.edu	37	8	73480531	73480531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNB2	NM_004770	exon2	c.T562C	p.S188P	.	.	74	4	48	0	.	158
KCNJ18	100134444	hgsc.bcm.edu	37	17	21319654	21319654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001194958	exon3	c.G1000A	p.E334K	.	.	317	10	305	0	.	.
KCNJ18	100134444	bcgsc.ca	37	17	21319360	21319360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001194958	exon3	c.C706T	p.R236W	.	.	236	23	190	1	.	.
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu	37	20	62059777	62059777	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNQ2	NM_172106	exon10	c.1160delC	p.P387fs	.	.	195	13	145	0	.	92
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu	37	6	73787512	73787512	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNQ5	NM_001160132	exon5	c.820delT	p.F274fs	.	.	142	11	107	0	.	158
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu	37	8	36793121	36793121	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNU1	NM_001031836	exon27	c.3133delA	p.K1045fs	.	.	181	15	134	0	.	23
KDM1A	23028	hgsc.bcm.edu;broad.mit.edu	37	1	23376988	23376988	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KDM1A	NM_001009999	exon4	c.686delT	p.V229fs	.	.	147	13	117	0	.	206
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu	37	6	18197380	18197380	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KDM1B	NM_153042	exon9	c.666delT	p.Y222fs	.	.	161	10	198	0	.	91
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121880092	121880092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KDM2B	NM_032590	exon19	c.3152delC	p.P1051fs	.	.	209	21	159	0	.	638
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu	37	12	432324	432324	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KDM5A	NM_001042603	exon16	c.2199delA	p.K733fs	.	.	281	20	208	0	.	227
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu	37	19	6415893	6415893	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KHSRP	NM_003685	exon16	c.1613delC	p.P538fs	.	.	198	12	157	0	.	226
KIAA0196	9897	hgsc.bcm.edu;bcgsc.ca	37	8	126052109	126052109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA0196	NM_014846	exon24	c.T2882C	p.I961T	.	.	82	4	63	0	.	92
KIAA0226L	80183	broad.mit.edu;bcgsc.ca	37	13	46919645	46919645	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_025113	exon13	c.1722delG	p.G574fs	.	.	63	8	82	0	.	.
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu	37	19	34832365	34832365	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA0355	NM_014686	exon10	c.1526delG	p.R509fs	.	.	200	12	160	0	.	91
KIAA1586	57691	broad.mit.edu;bcgsc.ca	37	6	56918118	56918118	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1586	NM_020931	exon4	c.821delA	p.E274fs	.	.	125	12	92	0	.	44
KIAA1644	85352	hgsc.bcm.edu	37	22	44681437	44681437	+	Missense_Mutation	SNP	C	C	T	rs200825189	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1644	NM_001099294	exon4	c.G470A	p.R157Q	.	.	37	15	30	0	C|0.989;T|0.011	23
KIAA1644	85352	hgsc.bcm.edu	37	22	44681439	44681439	+	Silent	SNP	A	A	T	rs200136871	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1644	NM_001099294	exon4	c.T468A	p.P156P	.	.	41	19	33	0	A|0.991;T|0.008	23
KIAA1715	80856	hgsc.bcm.edu;broad.mit.edu	37	2	176857112	176857112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1715	NM_030650	exon4	c.104delA	p.N35fs	.	.	208	14	170	0	.	93
KIAA1841	84542	hgsc.bcm.edu;broad.mit.edu	37	2	61304238	61304238	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1841	NM_032506	exon6	c.615delA	p.I205fs	.	.	184	11	145	0	.	90
KIAA1841	84542	hgsc.bcm.edu;broad.mit.edu	37	2	61308630	61308630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1841	NM_032506	exon7	c.714delA	p.L238fs	.	.	170	14	130	0	.	90
KIAA1919	91749	hgsc.bcm.edu;broad.mit.edu	37	6	111587466	111587466	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1919	NM_153369	exon4	c.701delT	p.L234fs	.	.	176	11	130	0	.	93
KIAA2018	205717	hgsc.bcm.edu	37	3	113376110	113376110	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA2018	NM_001009899	exon7	c.A4419G	p.Q1473Q	.	.	128	5	86	0	.	93
KIAA2022	340533	broad.mit.edu;bcgsc.ca	37	X	73961190	73961190	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA2022	NM_001008537	exon3	c.3202delC	p.L1068fs	.	.	82	8	85	0	.	183
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu	37	6	17852235	17852235	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF13A	NM_001105567	exon7	c.533delT	p.L178fs	.	.	188	16	128	0	.	137
KIF15	56992	hgsc.bcm.edu;broad.mit.edu	37	3	44879844	44879844	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF15	NM_020242	exon27	c.3249delG	p.S1083fs	.	.	161	10	153	0	.	91
KIF15	56992	hgsc.bcm.edu;broad.mit.edu	37	3	44882704	44882704	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF15	NM_020242	exon29	c.3559delA	p.K1187fs	.	.	129	11	95	0	.	91
KIF19	124602	hgsc.bcm.edu;bcgsc.ca	37	17	72350520	72350520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF19	NM_153209	exon18	c.A2528G	p.E843G	.	.	61	4	94	0	.	90
KIF19	124602	hgsc.bcm.edu;broad.mit.edu	37	17	72338849	72338849	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF19	NM_153209	exon4	c.312delC	p.G104fs	.	.	164	10	132	0	.	90
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu	37	12	39688246	39688246	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF21A	NM_001173464	exon38	c.5005delG	p.E1669fs	.	.	198	13	201	0	.	97
KIF2A	3796	hgsc.bcm.edu;broad.mit.edu	37	5	61643927	61643927	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF2A	NM_001243953	exon3	c.212delA	p.E71fs	.	.	170	11	126	0	.	228
KIF5B	3799	hgsc.bcm.edu;broad.mit.edu	37	10	32320045	32320045	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF5B	NM_004521	exon14	c.1537delA	p.T513fs	.	.	145	11	121	0	.	399
KIR2DL3	3804	hgsc.bcm.edu;bcgsc.ca	37	19	55263169	55263169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIR2DL3	NM_015868	exon6	c.T784C	p.F262L	.	.	116	5	48	0	.	92
KLC1	3831	hgsc.bcm.edu	37	14	104143836	104143836	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KLC1	NM_182923	exon12	c.A1464G	p.E488E	.	.	82	4	43	0	.	90
KLHDC1	122773	hgsc.bcm.edu;broad.mit.edu	37	14	50218392	50218392	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KLHDC1	NM_172193	exon13	c.1123delA	p.K375fs	.	.	136	11	96	0	.	91
KLHDC8B	200942	hgsc.bcm.edu	37	3	49210244	49210244	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KLHDC8B	NM_173546	exon2	c.42delC	p.F14fs	.	.	146	10	129	0	.	90
KLK6	5653	hgsc.bcm.edu;broad.mit.edu	37	19	51470427	51470427	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KLK6	NM_001012964	exon3	c.195delA	p.K65fs	.	.	190	13	104	0	.	650
KLRC4	8302	bcgsc.ca	37	12	10562090	10562090	+	Missense_Mutation	SNP	T	T	C	rs139613925		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KLRC4	NM_013431	exon1	c.A85G	p.I29V	.	.	404	12	312	0	T|1.000;C|0.000	90
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu	37	12	10539504	10539504	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001199805	exon8	c.146delA	p.N49fs	.	.	183	11	122	0	.	.
KNDC1	85442	hgsc.bcm.edu	37	10	134980888	134980888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KNDC1	NM_152643	exon2	c.A106G	p.N36D	.	.	125	5	103	0	.	229
KNDC1	85442	hgsc.bcm.edu	37	10	134999520	134999520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KNDC1	NM_152643	exon6	c.A668G	p.N223S	.	.	92	5	117	0	.	229
KPNA2	3838	hgsc.bcm.edu	37	17	66038453	66038453	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KPNA2	NM_002266	exon5	c.T555C	p.A185A	.	.	71	3	62	0	.	560
KRCC1	51315	hgsc.bcm.edu;broad.mit.edu	37	2	88327573	88327573	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KRCC1	NM_016618	exon4	c.510delA	p.K170fs	.	.	361	24	238	0	.	69
KRT35	3886	bcgsc.ca	37	17	39633318	39633318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KRT35	NM_002280	exon7	c.G1358C	p.G453A	.	.	123	5	88	0	.	92
KRTAP17-1	83902	hgsc.bcm.edu	37	17	39471774	39471774	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KRTAP17-1	NM_031964	exon1	c.C129T	p.C43C	.	.	52	9	87	0	.	68
KRTAP17-1	83902	hgsc.bcm.edu	37	17	39471781	39471781	+	Missense_Mutation	SNP	G	G	C	rs62640394		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KRTAP17-1	NM_031964	exon1	c.C122G	p.S41C	.	.	59	9	93	0	G|0.984;C|0.016	68
KRTAP25-1	100131902	hgsc.bcm.edu;broad.mit.edu	37	21	31661691	31661691	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001128598	exon1	c.118delT	p.S40fs	.	.	156	12	185	0	.	.
KRTAP5-2	440021	hgsc.bcm.edu;broad.mit.edu	37	11	1619161	1619161	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KRTAP5-2	NM_001004325	exon1	c.320delG	p.G107fs	.	.	241	15	183	0	.	44
L3MBTL1	26013	hgsc.bcm.edu;broad.mit.edu	37	20	42162009	42162009	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	L3MBTL1	NM_032107	exon13	c.1398delC	p.H466fs	.	.	149	10	99	0	.	227
LACE1	246269	hgsc.bcm.edu;broad.mit.edu	37	6	108668193	108668193	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LACE1	NM_145315	exon3	c.365delT	p.L122fs	.	.	142	10	124	0	.	90
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu	37	18	21399914	21399914	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LAMA3	NM_001127717	exon19	c.2257delT	p.F753fs	.	.	316	20	199	0	.	100
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu	37	18	21425024	21425024	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LAMA3	NM_001127717	exon30	c.3655delA	p.K1219fs	.	.	167	10	127	0	.	100
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu	37	6	112450166	112450166	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LAMA4	NM_001105206	exon31	c.4245delA	p.K1415fs	.	.	159	11	129	0	.	140
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu	37	20	60928262	60928262	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LAMA5	NM_005560	exon3	c.496delC	p.R166fs	.	.	182	11	139	0	.	93
LATS1	9113	hgsc.bcm.edu;bcgsc.ca	37	6	149997708	149997708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LATS1	NM_004690	exon6	c.A2759G	p.E920G	.	.	81	4	63	0	.	992
LBR	3930	hgsc.bcm.edu;broad.mit.edu	37	1	225607149	225607149	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LBR	NM_194442	exon5	c.456delA	p.K152fs	.	.	164	10	81	0	.	228
LCN15	389812	bcgsc.ca	37	9	139656671	139656671	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LCN15	NM_203347	exon5	c.C489G	p.P163P	.	.	225	7	173	0	.	68
LCN15	389812	hgsc.bcm.edu;broad.mit.edu	37	9	139656669	139656669	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LCN15	NM_203347	exon5	c.491delA	p.K164fs	.	.	228	14	169	0	.	68
LCORL	254251	hgsc.bcm.edu;broad.mit.edu	37	4	17885959	17885959	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LCORL	NM_001166139	exon7	c.1193delA	p.N398fs	.	.	133	10	105	0	.	90
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136594658	136594658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LCT	NM_002299	exon1	c.T82C	p.F28L	.	.	95	42	68	0	.	101
LEPR	3953	hgsc.bcm.edu;broad.mit.edu	37	1	66064394	66064394	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LEPR	NM_001003680	exon8	c.901delG	p.G301fs	.	.	206	15	179	0	.	91
LEPR	3953	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66067119	66067119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LEPR	NM_001003680	exon9	c.A1039C	p.N347H	.	.	81	29	66	0	.	91
LETM1	3954	hgsc.bcm.edu;broad.mit.edu	37	4	1818594	1818594	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LETM1	NM_012318	exon12	c.1791delG	p.K597fs	.	.	321	20	262	0	.	90
LGALS4	3960	hgsc.bcm.edu;broad.mit.edu	37	19	39294528	39294528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LGALS4	NM_006149	exon5	c.482delC	p.P161fs	.	.	131	10	95	0	.	92
LHX1	3975	broad.mit.edu;bcgsc.ca	37	17	35299634	35299634	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LHX1	NM_005568	exon4	c.813delC	p.I271fs	.	.	89	8	89	0	.	92
LHX2	9355	hgsc.bcm.edu	37	9	126774713	126774713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LHX2	NM_004789	exon1	c.T86C	p.I29T	.	.	45	4	41	0	.	90
LIG1	3978	hgsc.bcm.edu;bcgsc.ca	37	19	48665558	48665558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LIG1	NM_000234	exon3	c.A68G	p.E23G	.	.	101	5	90	0	.	722
LIG3	3980	hgsc.bcm.edu;broad.mit.edu	37	17	33323630	33323630	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LIG3	NM_013975	exon11	c.1781delT	p.V594fs	.	.	167	11	130	0	.	728
LILRA2	11027	bcgsc.ca	37	19	55086776	55086776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LILRA2	NM_001130917	exon5	c.G709T	p.G237W	.	.	771	14	492	0	.	91
LIMK1	3984	hgsc.bcm.edu;broad.mit.edu	37	7	73523283	73523283	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LIMK1	NM_002314	exon10	c.1201delG	p.G401fs	.	.	213	14	86	0	.	523
LINGO2	158038	hgsc.bcm.edu;broad.mit.edu	37	9	27950495	27950495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LINGO2	NM_001258282	exon7	c.175delA	p.T59fs	.	.	234	15	355	0	.	516
LMNB2	84823	hgsc.bcm.edu;broad.mit.edu	37	19	2432473	2432473	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LMNB2	NM_032737	exon9	c.1531delG	p.E511fs	.	.	168	10	125	0	.	290
LOC642236	0	bcgsc.ca	37	9	68452945	68452945	+	RNA	SNP	G	G	A	rs62545407		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	98	16	55	1	.	.
LOC642236	0	bcgsc.ca	37	9	68452950	68452950	+	RNA	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	97	16	53	0	.	.
LOC642236	0	bcgsc.ca	37	9	68452987	68452987	+	RNA	SNP	G	G	C	rs62545408		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	81	20	32	0	.	.
LONP2	83752	bcgsc.ca	37	16	48278314	48278314	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LONP2	NM_031490	exon1	c.15delC	p.S5fs	.	.	33	4	71	0	.	90
LONRF1	91694	bcgsc.ca	37	8	12595561	12595561	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LONRF1	NM_152271	exon4	c.1056delT	p.F352fs	.	.	49	5	70	0	.	91
LOXHD1	125336	bcgsc.ca	37	18	44149475	44149475	+	Missense_Mutation	SNP	T	T	A	rs141137527	by1000genomes;alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_144612	exon16	c.A2174T	p.N725I	.	.	170	6	142	0	T|0.999;C|0.000	.
LPA	4018	bcgsc.ca	37	6	161027664	161027664	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LPA	NM_005577	exon18	c.2630delA	p.N877fs	.	.	64	6	105	0	.	74
LPAR5	57121	hgsc.bcm.edu;bcgsc.ca	37	12	6729711	6729711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LPAR5	NM_001142961	exon2	c.T704C	p.L235P	.	.	30	4	42	0	.	70
LPIN3	64900	hgsc.bcm.edu;broad.mit.edu	37	20	39977799	39977799	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LPIN3	NM_022896	exon5	c.625delC	p.P209fs	.	.	159	10	130	0	.	93
LRBA	987	hgsc.bcm.edu	37	4	151773390	151773390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRBA	NM_006726	exon23	c.G3472A	p.E1158K	.	.	93	3	112	0	.	157
LRBA	987	hgsc.bcm.edu;broad.mit.edu	37	4	151520174	151520174	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRBA	NM_006726	exon38	c.6031delA	p.T2011fs	.	.	123	10	150	0	.	157
LRP1B	53353	hgsc.bcm.edu	37	2	141739764	141739764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRP1B	NM_018557	exon18	c.A2852G	p.D951G	.	.	120	4	89	0	.	311
LRP4	4038	hgsc.bcm.edu;broad.mit.edu	37	11	46903431	46903431	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRP4	NM_002334	exon20	c.2636delG	p.G879fs	.	.	159	10	130	0	.	94
LRP6	4040	hgsc.bcm.edu	37	12	12300340	12300340	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRP6	NM_002336	exon15	c.T3357C	p.A1119A	.	.	117	3	92	0	.	661
LRP6	4040	broad.mit.edu;bcgsc.ca	37	12	12268230	12268230	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRP6	.	.	.	.	.	.	71	7	95	0	.	661
LRR1	122769	bcgsc.ca	37	14	50069131	50069131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRR1	NM_152329	exon2	c.A227G	p.E76G	.	.	124	5	107	0	.	227
LRRC31	79782	hgsc.bcm.edu	37	3	169566057	169566057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRC31	NM_024727	exon8	c.T1178C	p.L393P	.	.	100	5	72	0	.	93
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu	37	16	67360810	67360810	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRC36	NM_018296	exon1	c.45delG	p.L15fs	.	.	109	11	96	0	.	90
LRRC37A2	474170	bcgsc.ca	37	17	44626661	44626661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001006607	exon9	c.A4156G	p.N1386D	.	.	668	19	596	0	.	.
LRRC40	55631	hgsc.bcm.edu;broad.mit.edu	37	1	70618181	70618181	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRC40	NM_017768	exon12	c.1374delT	p.F458fs	.	.	238	16	192	0	.	91
LRRC49	54839	hgsc.bcm.edu	37	15	71188254	71188254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRC49	NM_001199017	exon3	c.A187G	p.R63G	.	.	90	4	59	0	.	91
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu	37	2	238647924	238647924	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRFIP1	NM_001137550	exon11	c.605delG	p.R202fs	.	.	168	11	122	0	.	153
LRRN3	54674	hgsc.bcm.edu;bcgsc.ca	37	7	110764583	110764583	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRN3	NM_018334	exon2	c.A1755G	p.P585P	.	.	65	4	73	0	.	154
LTF	4057	hgsc.bcm.edu	37	3	46501284	46501284	+	Silent	SNP	C	C	T	rs76787706		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LTF	NM_002343	exon2	c.G69A	p.R23R	.	.	174	3	162	0	.	703
LXN	56925	hgsc.bcm.edu	37	3	158387376	158387376	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LXN	NM_020169	exon3	c.T216C	p.A72A	.	.	146	3	122	0	.	90
LY75	4065	hgsc.bcm.edu	37	2	160661583	160661583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LY75	NM_002349	exon35	c.A5141G	p.E1714G	.	.	97	3	86	0	.	90
M6PR	4074	hgsc.bcm.edu	37	12	9099000	9099000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	M6PR	NM_001207024	exon2	c.A1T	p.M1L	.	.	144	10	129	0	.	90
MACC1	346389	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20198917	20198917	+	Missense_Mutation	SNP	G	G	A	rs143555326	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MACC1	NM_182762	exon5	c.C1067T	p.P356L	.	.	164	52	167	0	A|0.001;G|0.999;T|0.000	93
MACROD1	28992	hgsc.bcm.edu;broad.mit.edu	37	11	63767024	63767024	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MACROD1	NM_014067	exon7	c.795delC	p.P265fs	.	.	157	11	93	0	.	68
MACROD2	140733	hgsc.bcm.edu;broad.mit.edu	37	20	13976431	13976431	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MACROD2	NM_080676	exon1	c.22delA	p.K8fs	.	.	162	10	133	0	.	22
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu	37	X	75650522	75650522	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAGEE1	NM_020932	exon1	c.2199delA	p.S733fs	.	.	165	10	125	0	.	262
MAGI3	260425	hgsc.bcm.edu;broad.mit.edu	37	1	114162410	114162410	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAGI3	NM_152900	exon8	c.1129delA	p.K377fs	.	.	214	14	185	0	.	524
MAMDC4	158056	hgsc.bcm.edu;broad.mit.edu	37	9	139753286	139753286	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAMDC4	NM_206920	exon23	c.2937delG	p.M979fs	.	.	110	10	112	0	.	156
MAML2	84441	bcgsc.ca	37	11	95825386	95825386	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAML2	NM_032427	exon2	c.G1809A	p.Q603Q	.	.	226	8	132	2	.	850
MAML2	84441	hgsc.bcm.edu	37	11	95825365	95825365	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAML2	NM_032427	exon2	c.G1830A	p.Q610Q	.	.	204	18	135	0	.	850
MAML3	55534	hgsc.bcm.edu	37	4	140811081	140811081	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAML3	NM_018717	exon2	c.G1509A	p.Q503Q	.	.	69	9	100	0	.	455
MAML3	55534	hgsc.bcm.edu;bcgsc.ca	37	4	140811105	140811105	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAML3	NM_018717	exon2	c.G1485A	p.Q495Q	.	.	71	19	90	0	.	455
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu	37	15	91448708	91448708	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAN2A2	NM_006122	exon2	c.360delG	p.L120fs	.	.	175	11	143	0	.	136
MAN2B1	4125	hgsc.bcm.edu;broad.mit.edu	37	19	12760238	12760238	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAN2B1	NM_000528	exon19	c.2272delG	p.D758fs	.	.	223	18	156	0	.	94
MAN2C1	4123	hgsc.bcm.edu	37	15	75650546	75650546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAN2C1	NM_001256494	exon21	c.T2594C	p.F865S	.	.	109	9	76	0	.	90
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu	37	15	43816721	43816721	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP1A	NM_002373	exon4	c.3050delA	p.E1017fs	.	.	123	10	108	0	.	141
MAP1B	4131	hgsc.bcm.edu	37	5	71494401	71494401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP1B	NM_005909	exon5	c.A5219G	p.Q1740R	.	.	127	3	75	0	.	155
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu	37	19	17836717	17836717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP1S	NM_018174	exon5	c.524delG	p.W175fs	.	.	176	12	212	0	.	90
MAP3K5	4217	hgsc.bcm.edu;bcgsc.ca	37	6	136935403	136935403	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP3K5	NM_005923	exon16	c.A2172G	p.E724E	.	.	76	4	57	0	.	982
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu	37	X	135314194	135314194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP7D3	NM_024597	exon8	c.922delC	p.Q308fs	.	.	138	11	132	0	.	110
MAPK11	5600	hgsc.bcm.edu;broad.mit.edu	37	22	50704089	50704089	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAPK11	NM_002751	exon10	c.763delG	p.A255fs	.	.	148	10	135	0	.	1402
MAPK12	6300	hgsc.bcm.edu	37	22	50695539	50695539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAPK12	NM_002969	exon4	c.T398C	p.L133P	.	.	71	4	98	0	.	1402
MAPK14	1432	hgsc.bcm.edu;broad.mit.edu	37	6	36063826	36063826	+	Frame_Shift_Del	DEL	A	A	-	rs150174370		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAPK14	NM_139012	exon9	c.745delA	p.K249fs	.	.	118	10	119	0	.	1444
MB21D1	115004	hgsc.bcm.edu;broad.mit.edu	37	6	74161746	74161746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MB21D1	NM_138441	exon1	c.159delC	p.P53fs	.	.	179	12	147	0	.	90
MBD1	4152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	47801526	47801526	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MBD1	NM_001204137	exon10	c.A957G	p.P319P	.	.	96	35	85	0	.	228
MBD5	55777	hgsc.bcm.edu;broad.mit.edu	37	2	149243489	149243489	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MBD5	NM_018328	exon11	c.3024delC	p.N1008fs	.	.	206	13	157	0	.	95
MBD5	55777	hgsc.bcm.edu;broad.mit.edu	37	2	149247480	149247480	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MBD5	NM_018328	exon12	c.3580delA	p.K1194fs	.	.	167	11	121	0	.	95
MCHR2	84539	hgsc.bcm.edu;broad.mit.edu	37	6	100395834	100395834	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MCHR2	NM_001040179	exon3	c.196delA	p.T66fs	.	.	184	13	152	0	.	525
MCM3	4172	hgsc.bcm.edu;broad.mit.edu	37	6	52147525	52147525	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MCM3	NM_002388	exon3	c.461delA	p.K154fs	.	.	166	10	135	0	.	228
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	21	47685325	47685325	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MCM3AP	NM_003906	exon12	c.A3144G	p.A1048A	.	.	66	4	78	0	.	291
MDGA1	266727	hgsc.bcm.edu	37	6	37631783	37631783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MDGA1	NM_153487	exon2	c.T167C	p.L56P	.	.	178	5	148	0	.	91
MDK	4192	hgsc.bcm.edu;broad.mit.edu	37	11	46404272	46404272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MDK	NM_001012333	exon4	c.380delC	p.T127fs	.	.	292	19	255	0	.	90
MDN1	23195	hgsc.bcm.edu;broad.mit.edu	37	6	90382309	90382309	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MDN1	NM_014611	exon81	c.13587delA	p.K4529fs	.	.	166	11	95	0	.	100
MEA1	4201	hgsc.bcm.edu	37	6	42980713	42980713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MEA1	NM_014623	exon3	c.G357T	p.E119D	.	.	116	8	131	0	.	91
MECR	51102	bcgsc.ca	37	1	29520604	29520604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MECR	NM_016011	exon10	c.A1052G	p.Q351R	.	.	128	5	106	0	.	91
MED13	9969	bcgsc.ca	37	17	60043885	60043885	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MED13	NM_005121	exon19	c.A4319T	p.D1440V	.	.	196	7	118	0	.	136
MED13	9969	hgsc.bcm.edu	37	17	60028243	60028243	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MED13	NM_005121	exon28	c.T6234C	p.P2078P	.	.	84	3	66	0	.	136
MED15	51586	hgsc.bcm.edu	37	22	20920810	20920810	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MED15	NM_015889	exon7	c.G747A	p.Q249Q	.	.	97	8	82	0	.	211
MED23	9439	hgsc.bcm.edu	37	6	131931307	131931307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MED23	NM_015979	exon12	c.A974G	p.E325G	.	.	78	4	44	0	.	24
MEGF9	1955	bcgsc.ca	37	9	123476119	123476119	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001080497	exon1	c.518delC	p.P173fs	.	.	53	5	83	0	.	.
MEMO1	51072	broad.mit.edu;bcgsc.ca	37	2	32093512	32093512	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MEMO1	NM_015955	exon9	c.812delT	p.L271X	.	.	381	16	348	0	.	92
MEOX2	4223	hgsc.bcm.edu	37	7	15725800	15725800	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MEOX2	NM_005924	exon1	c.C228T	p.H76H	.	.	75	5	58	0	.	515
METAP1	23173	bcgsc.ca	37	4	99982389	99982389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_015143	exon11	c.T1082C	p.L361P	.	.	80	4	126	1	.	.
MEX3D	399664	bcgsc.ca	37	19	1556574	1556574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MEX3D	NM_203304	exon2	c.944delA	p.E315fs	.	.	52	6	66	0	.	658
MFAP3	4238	hgsc.bcm.edu;broad.mit.edu	37	5	153432802	153432802	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MFAP3	NM_005927	exon3	c.618delC	p.I206fs	.	.	136	10	121	0	.	90
MFSD6L	162387	broad.mit.edu;bcgsc.ca	37	17	8702131	8702131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MFSD6L	NM_152599	exon1	c.308delA	p.N103fs	.	.	66	8	100	0	.	90
MFSD9	84804	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	103334977	103334978	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MFSD9	NM_032718	exon6	c.1327_1328insC	p.S443fs	.	.	133	23	106	0	.	155
MGA	23269	hgsc.bcm.edu;broad.mit.edu	37	15	41961559	41961559	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MGA	NM_001080541	exon2	c.467delT	p.V156fs	.	.	204	15	173	0	.	522
MGA	23269	hgsc.bcm.edu;broad.mit.edu	37	15	42057143	42057143	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MGA	NM_001164273	exon23	c.7804delG	p.G2602fs	.	.	197	12	147	0	.	522
MICAL1	64780	hgsc.bcm.edu	37	6	109773524	109773524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MICAL1	NM_001159291	exon6	c.A757G	p.T253A	.	.	128	3	80	0	.	154
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu	37	22	38321985	38321985	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MICALL1	NM_033386	exon8	c.1400delC	p.T467fs	.	.	239	16	215	0	.	153
MIER1	57708	broad.mit.edu;bcgsc.ca	37	1	67442326	67442326	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MIER1	NM_001077700	exon12	c.1150delA	p.K384fs	.	.	81	8	81	0	.	91
MIER1	57708	broad.mit.edu;bcgsc.ca	37	1	67452114	67452114	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MIER1	NM_001077703	exon15	c.1419delT	p.H473fs	.	.	88	9	104	0	.	91
MIR147B	100126311	hgsc.bcm.edu	37	15	45725320	45725320	+	RNA	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	204	13	187	0	.	.
MIR21	406991	bcgsc.ca	37	17	57918655	57918655	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	171	6	128	0	.	.
MIR556	693141	hgsc.bcm.edu	37	1	162312409	162312409	+	RNA	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	179	13	104	0	.	.
MKLN1	4289	bcgsc.ca	37	7	131096093	131096093	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MKLN1	NM_013255	exon7	c.A732G	p.Q244Q	.	.	219	6	187	0	.	135
MKS1	54903	bcgsc.ca	37	17	56290440	56290440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MKS1	NM_017777	exon8	c.A761G	p.E254G	.	.	77	4	92	1	.	91
MLKL	197259	hgsc.bcm.edu;broad.mit.edu	37	16	74725195	74725195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MLKL	NM_152649	exon4	c.702delA	p.K234fs	.	.	162	12	139	0	.	561
MLL4	8085	hgsc.bcm.edu	37	19	36214634	36214634	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MLL4	NM_014727	exon8	c.C3060G	p.G1020G	.	.	60	13	65	0	.	697
MLL4	8085	hgsc.bcm.edu	37	19	36214636	36214636	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MLL4	NM_014727	exon8	c.G3062C	p.R1021P	.	.	57	8	64	0	.	697
MLLT10P1	140678	bcgsc.ca	37	20	29638001	29638001	+	RNA	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	28	4	33	0	.	.
MLXIP	22877	hgsc.bcm.edu;broad.mit.edu	37	12	122618185	122618185	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MLXIP	NM_014938	exon9	c.1383delC	p.N461fs	.	.	163	11	123	0	.	92
MME	4311	hgsc.bcm.edu	37	3	154802867	154802867	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MME	NM_007287	exon3	c.A180G	p.S60S	.	.	196	4	177	0	.	516
MNS1	55329	hgsc.bcm.edu	37	15	56723587	56723587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MNS1	NM_018365	exon9	c.T1379C	p.L460P	.	.	206	4	162	0	.	91
MORC2	22880	hgsc.bcm.edu	37	22	31334114	31334114	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MORC2	NM_014941	exon14	c.C966T	p.I322I	.	.	155	3	137	0	.	92
MORN4	118812	hgsc.bcm.edu	37	10	99376156	99376156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MORN4	NM_001098831	exon5	c.T305C	p.F102S	.	.	53	4	79	0	.	90
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	9	13168371	13168371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MPDZ	NM_003829	exon22	c.A3248G	p.D1083G	.	.	84	5	95	0	.	231
MPRIP	23164	hgsc.bcm.edu	37	17	17039564	17039564	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MPRIP	NM_015134	exon6	c.G536C	p.S179T	.	.	88	5	93	0	.	90
MROH5	389690	bcgsc.ca	37	8	142490080	142490080	+	RNA	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	116	5	106	0	.	.
MROH6	642475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144654667	144654667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001100878	exon1	c.C218T	p.A73V	.	.	93	16	62	0	.	.
MROH7	374977	bcgsc.ca	37	1	55119548	55119548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001039464	exon3	c.C949G	p.P317A	.	.	242	7	208	0	.	.
MRPL16	54948	hgsc.bcm.edu;broad.mit.edu	37	11	59575183	59575183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MRPL16	NM_017840	exon3	c.261delT	p.F87fs	.	.	218	13	171	0	.	90
MRPL3	11222	bcgsc.ca	37	3	131206553	131206553	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MRPL3	NM_007208	exon6	c.A600G	p.P200P	.	.	200	6	168	0	.	90
MRPL39	54148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	26973731	26973731	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MRPL39	NM_017446	exon4	c.469delG	p.A157fs	.	.	100	11	134	0	.	90
MSH6	2956	hgsc.bcm.edu	37	2	48027194	48027194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MSH6	NM_000179	exon4	c.T2072C	p.L691P	.	.	95	3	81	0	.	3014
MST1	4485	bcgsc.ca	37	3	49722905	49722905	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MST1	NM_020998	exon12	c.A1422C	p.P474P	.	.	524	20	331	1	.	278
MST1	4485	hgsc.bcm.edu	37	3	49722912	49722912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MST1	NM_020998	exon12	c.A1415C	p.D472A	.	.	488	24	304	0	.	278
MST1P2	11209	bcgsc.ca	37	1	16976756	16976756	+	RNA	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	459	13	352	0	.	.
MTFMT	123263	hgsc.bcm.edu;broad.mit.edu	37	15	65295429	65295429	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTFMT	NM_139242	exon9	c.1141delA	p.T381fs	.	.	116	10	76	0	.	24
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu	37	2	55489457	55489457	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTIF2	NM_002453	exon5	c.326delA	p.N109fs	.	.	171	13	107	0	.	91
MTMR3	8897	hgsc.bcm.edu;bcgsc.ca	37	22	30387534	30387534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTMR3	NM_153050	exon7	c.A335G	p.K112R	.	.	80	5	68	0	.	292
MTMR7	9108	hgsc.bcm.edu	37	8	17159699	17159699	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTMR7	NM_004686	exon13	c.T1584C	p.T528T	.	.	86	2	130	0	.	91
MTOR	2475	broad.mit.edu;bcgsc.ca	37	1	11291080	11291080	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTOR	NM_004958	exon18	c.2681delT	p.L894fs	.	.	65	7	70	0	.	1439
MTRF1L	54516	broad.mit.edu;bcgsc.ca	37	6	153316408	153316408	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTRF1L	NM_019041	exon3	c.386delT	p.L129X	.	.	238	10	196	0	.	90
MTRF1L	54516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	153315778	153315778	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTRF1L	NM_019041	exon4	c.557delG	p.G186fs	.	.	122	10	126	0	.	90
MTRR	4552	hgsc.bcm.edu;broad.mit.edu	37	5	7900115	7900115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTRR	NM_024010	exon15	c.2122delA	p.K708fs	.	.	133	10	151	0	.	91
MTSS1	9788	hgsc.bcm.edu	37	8	125569986	125569986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTSS1	NM_014751	exon11	c.A1166G	p.D389G	.	.	142	4	120	0	.	91
MTSS1	9788	hgsc.bcm.edu;broad.mit.edu	37	8	125597329	125597329	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTSS1	NM_014751	exon6	c.459delA	p.K153fs	.	.	194	14	167	0	.	91
MUC16	94025	bcgsc.ca	37	19	9056769	9056769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC16	NM_024690	exon3	c.A30677G	p.D10226G	.	.	196	6	147	0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu	37	19	9066715	9066715	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC16	NM_024690	exon3	c.20731delA	p.T6911fs	.	.	198	13	164	0	.	566
MUC16	94025	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9089471	9089471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC16	NM_024690	exon1	c.C2344G	p.P782A	.	.	159	66	111	0	.	566
MUC2	4583	bcgsc.ca	37	11	1084822	1084822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC2	NM_002457	exon20	c.G2617C	p.G873R	.	.	223	6	178	0	.	90
MUC2	4583	broad.mit.edu	37	11	1093299	1093299	+	Silent	SNP	G	G	A	rs113492997	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC2	NM_002457	exon30	c.G5118A	p.T1706T	.	.	59	5	60	1	.	90
MUC4	4585	bcgsc.ca	37	3	195507564	195507564	+	Missense_Mutation	SNP	C	C	G	rs71187741		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC4	NM_018406	exon2	c.G10887C	p.Q3629H	.	.	243	27	156	4	C|0.500;G|0.500	90
MUC4	4585	hgsc.bcm.edu	37	3	195498669	195498669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC4	NM_018406	exon5	c.A13096G	p.I4366V	.	.	89	2	77	0	.	90
MUC4	4585	hgsc.bcm.edu	37	3	195518110	195518110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC4	NM_018406	exon2	c.C341T	p.A114V	.	.	208	20	133	0	.	90
MUC7	4589	bcgsc.ca	37	4	71346702	71346702	+	Missense_Mutation	SNP	C	C	G	rs72552288	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC7	NM_001145007	exon4	c.C241G	p.P81A	.	.	226	9	172	0	C|0.700;G|0.300	93
MUT	4594	hgsc.bcm.edu;broad.mit.edu	37	6	49416619	49416619	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUT	NM_000255	exon7	c.1354delA	p.M452fs	.	.	165	11	118	0	.	91
MUTYH	4595	hgsc.bcm.edu;broad.mit.edu	37	1	45797094	45797094	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUTYH	NM_001128425	exon13	c.1321delG	p.E441fs	.	.	159	12	141	0	.	1083
MYB	4602	hgsc.bcm.edu	37	6	135507076	135507076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYB	NM_001161660	exon2	c.A59G	p.E20G	.	.	90	4	80	0	.	838
MYBPH	4608	hgsc.bcm.edu	37	1	203137788	203137788	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYBPH	NM_004997	exon10	c.G1433A	p.X478X	.	.	122	8	98	0	.	90
MYBPHL	343263	hgsc.bcm.edu;broad.mit.edu	37	1	109837772	109837772	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYBPHL	NM_001010985	exon7	c.1015delC	p.L339X	.	.	207	15	188	0	.	92
MYCBP2	23077	bcgsc.ca	37	13	77732199	77732199	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYCBP2	NM_015057	exon45	c.6643delT	p.S2215fs	.	.	54	6	70	0	.	236
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu	37	13	77798633	77798633	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYCBP2	NM_015057	exon20	c.2892delT	p.F964fs	.	.	158	11	219	0	.	236
MYCBPAP	84073	hgsc.bcm.edu	37	17	48598485	48598485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYCBPAP	NM_032133	exon8	c.A1060G	p.R354G	.	.	57	4	51	0	.	230
MYH15	22989	hgsc.bcm.edu;broad.mit.edu	37	3	108205276	108205276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYH15	NM_014981	exon11	c.1029delC	p.A343fs	.	.	160	10	162	0	.	73
MYH2	4620	broad.mit.edu;bcgsc.ca	37	17	10433334	10433334	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYH2	NM_017534	exon23	c.2755delA	p.I919fs	.	.	639	29	533	0	.	194
MYH8	4626	bcgsc.ca	37	17	10300258	10300258	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYH8	NM_002472	exon31	c.A4224G	p.E1408E	.	.	210	6	165	1	.	101
MYLK	4638	bcgsc.ca	37	3	123457877	123457877	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYLK	NM_053025	exon7	c.455delG	p.R152fs	.	.	63	6	74	0	.	365
MYO10	4651	hgsc.bcm.edu;broad.mit.edu	37	5	16763789	16763789	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO10	NM_012334	exon13	c.1402delT	p.S468fs	.	.	233	14	213	0	.	3
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu	37	17	18051452	18051452	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO15A	NM_016239	exon30	c.6619delC	p.P2207fs	.	.	204	13	151	0	.	97
MYO16	23026	bcgsc.ca	37	13	109792675	109792675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO16	NM_001198950	exon32	c.A4115G	p.K1372R	.	.	20	4	29	0	.	142
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu	37	17	27441077	27441077	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO18A	NM_078471	exon15	c.2550delG	p.P850fs	.	.	124	11	97	0	.	22
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu	37	22	26164836	26164836	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO18B	NM_032608	exon4	c.953delG	p.W318fs	.	.	127	11	99	0	.	142
MYO1A	4640	bcgsc.ca	37	12	57437103	57437103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO1A	NM_005379	exon11	c.A932G	p.E311G	.	.	170	6	119	0	.	231
MYO1C	4641	hgsc.bcm.edu	37	17	1383903	1383903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO1C	NM_001080779	exon7	c.T824C	p.V275A	.	.	79	4	93	0	.	90
MYO1D	4642	hgsc.bcm.edu	37	17	30965824	30965824	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO1D	NM_015194	exon20	c.A2625G	p.R875R	.	.	184	4	164	0	.	137
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu	37	10	26359089	26359089	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO3A	NM_017433	exon13	c.1220delT	p.I407fs	.	.	174	11	149	0	.	1007
MYO3B	140469	bcgsc.ca	37	2	171071285	171071285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO3B	NM_001083615	exon5	c.A473G	p.K158R	.	.	196	6	145	0	.	530
MYO6	4646	hgsc.bcm.edu;broad.mit.edu	37	6	76558143	76558143	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO6	NM_004999	exon11	c.973delA	p.K325fs	.	.	179	11	143	0	.	92
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu	37	18	3129514	3129514	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYOM1	NM_003803	exon18	c.2510delG	p.G837fs	.	.	235	15	183	0	.	94
MYOM2	9172	broad.mit.edu;bcgsc.ca	37	8	2064054	2064054	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYOM2	NM_003970	exon27	c.3370delT	p.F1124fs	.	.	58	7	87	0	.	95
MYOM3	127294	bcgsc.ca	37	1	24416063	24416063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYOM3	NM_152372	exon14	c.C1579G	p.R527G	.	.	154	6	94	0	.	93
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu	37	1	24394840	24394840	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYOM3	NM_152372	exon26	c.3168delT	p.F1056fs	.	.	166	10	150	0	.	93
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu	37	1	24416059	24416059	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYOM3	NM_152372	exon14	c.1583delA	p.D528fs	.	.	148	11	88	0	.	93
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu	37	2	1795691	1795691	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYT1L	NM_015025	exon25	c.3503delA	p.N1168fs	.	.	163	11	126	0	.	95
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu	37	16	48596002	48596002	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	N4BP1	NM_153029	exon2	c.552delA	p.K184fs	.	.	129	11	121	0	.	22
N4BP2	55728	hgsc.bcm.edu;bcgsc.ca	37	4	40121838	40121838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	N4BP2	NM_018177	exon9	c.A2107G	p.I703V	.	.	50	4	48	0	.	602
NAA25	80018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	112479858	112479858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAA25	NM_024953	exon20	c.C2425G	p.L809V	.	.	25	6	17	0	.	155
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu	37	11	89911108	89911108	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAALAD2	NM_005467	exon16	c.1681delA	p.K561fs	.	.	246	18	164	0	.	92
NAALADL2	254827	bcgsc.ca	37	3	175165080	175165080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAALADL2	NM_207015	exon6	c.C1154T	p.P385L	.	.	138	7	76	0	.	47
NAALADL2	254827	hgsc.bcm.edu;bcgsc.ca	37	3	175181236	175181236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAALADL2	NM_207015	exon7	c.A1282G	p.T428A	.	.	61	4	46	0	.	47
NABP1	64859	hgsc.bcm.edu;broad.mit.edu	37	2	192546731	192546731	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001031716	exon3	c.290delA	p.Q97fs	.	.	251	15	193	0	.	.
NADKD1	133686	hgsc.bcm.edu	37	5	36226660	36226660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NADKD1	NM_001085411	exon3	c.A395G	p.E132G	.	.	69	3	50	0	.	92
NAF1	92345	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164085383	164085383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAF1	NM_138386	exon2	c.G526C	p.E176Q	.	.	117	11	128	0	.	70
NAP1L1	4673	bcgsc.ca	37	12	76449901	76449901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAP1L1	NM_004537	exon7	c.A470G	p.K157R	.	.	414	15	394	0	.	92
NAPB	63908	hgsc.bcm.edu	37	20	23383704	23383704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAPB	NM_022080	exon2	c.A104G	p.N35S	.	.	93	4	68	0	.	91
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu	37	19	50868809	50868809	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAPSA	NM_004851	exon1	c.70delG	p.A24fs	.	.	171	13	71	0	.	90
NAT10	55226	hgsc.bcm.edu	37	11	34158558	34158558	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAT10	NM_024662	exon21	c.T2196C	p.Y732Y	.	.	122	3	95	0	.	92
NBPF16	728936	hgsc.bcm.edu	37	1	148744584	148744584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001102663	exon6	c.731delC	p.S244fs	.	.	160	11	75	0	.	.
NBPF3	84224	broad.mit.edu	37	1	21806564	21806564	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NBPF3	NM_032264	exon11	c.A1229C	p.X410S	.	.	122	7	20	0	.	92
NBPF3	84224	hgsc.bcm.edu;mdanderson.org	37	1	21806573	21806573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NBPF3	NM_032264	exon11	c.T1238G	p.F413C	.	.	121	37	17	0	.	92
NCBP1	4686	hgsc.bcm.edu	37	9	100429054	100429054	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NCBP1	NM_002486	exon20	c.T1911C	p.V637V	.	.	87	4	70	0	.	90
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu	37	20	33329681	33329681	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NCOA6	NM_014071	exon11	c.4379delA	p.K1460fs	.	.	198	12	167	0	.	292
NCSTN	23385	hgsc.bcm.edu	37	1	160318871	160318871	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NCSTN	NM_015331	exon3	c.273delC	p.N91fs	.	.	272	17	147	0	.	658
ND5	0	bcgsc.ca	37	MT	13595	13595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	ENST00000361567	exon1	c.G1259A	p.S420N	.	.	17	11	92	0	.	.
NDOR1	27158	broad.mit.edu;bcgsc.ca	37	9	140108437	140108437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NDOR1	NM_001144026	exon5	c.429delC	p.D143fs	.	.	64	8	72	0	.	90
NDRG3	57446	hgsc.bcm.edu;broad.mit.edu	37	20	35310974	35310974	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NDRG3	NM_032013	exon7	c.391delA	p.S131fs	.	.	212	16	137	0	.	91
NDUFAF4	29078	hgsc.bcm.edu	37	6	97338980	97338980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NDUFAF4	NM_014165	exon3	c.A528G	p.X176W	.	.	89	4	47	0	.	91
NDUFAF5	79133	bcgsc.ca	37	20	13775545	13775545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_024120	exon5	c.C437T	p.P146L	.	.	113	4	82	0	.	.
NDUFV3	4731	hgsc.bcm.edu	37	21	44323563	44323563	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NDUFV3	NM_021075	exon3	c.A441G	p.K147K	.	.	91	4	109	0	.	92
NEBL	10529	hgsc.bcm.edu	37	10	21134239	21134239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEBL	NM_006393	exon12	c.A1175G	p.D392G	.	.	81	3	47	0	.	92
NEDD1	121441	bcgsc.ca	37	12	97336371	97336371	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEDD1	NM_001135175	exon10	c.G1284A	p.K428K	.	.	55	4	60	0	.	90
NEDD1	121441	hgsc.bcm.edu	37	12	97328852	97328852	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEDD1	NM_001135175	exon6	c.T609C	p.S203S	.	.	204	6	192	0	.	90
NEDD4L	23327	hgsc.bcm.edu	37	18	56018257	56018257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEDD4L	NM_001144967	exon18	c.G1688A	p.R563Q	.	.	96	4	60	0	.	658
NEK10	152110	hgsc.bcm.edu;broad.mit.edu	37	3	27332187	27332187	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK10	NM_199347	exon20	c.1664delC	p.P555fs	.	.	141	11	89	0	.	695
NEK1	4750	broad.mit.edu;bcgsc.ca	37	4	170428880	170428880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK1	NM_001199397	exon22	c.1897delA	p.I633fs	.	.	86	8	98	0	.	361
NEK3	4752	hgsc.bcm.edu;bcgsc.ca	37	13	52707932	52707932	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK3	NM_002498	exon15	c.A1329G	p.K443K	.	.	60	4	84	0	.	359
NEK4	6787	hgsc.bcm.edu	37	3	52775439	52775439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK4	NM_003157	exon13	c.A2081G	p.D694G	.	.	91	3	71	0	.	358
NEK4	6787	hgsc.bcm.edu;broad.mit.edu	37	3	52745814	52745814	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK4	NM_003157	exon16	c.2505delT	p.F835fs	.	.	164	12	176	0	.	358
NEK6	10783	bcgsc.ca	37	9	127089627	127089627	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK6	NM_001166171	exon8	c.T627C	p.P209P	.	.	181	6	136	0	.	334
NEK8	284086	hgsc.bcm.edu;broad.mit.edu	37	17	27064915	27064915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK8	NM_178170	exon7	c.968delC	p.T323fs	.	.	118	10	81	0	.	335
NEXN	91624	hgsc.bcm.edu;broad.mit.edu	37	1	78401649	78401649	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEXN	NM_144573	exon11	c.1393delA	p.K465fs	.	.	229	21	157	0	.	92
NEXN	91624	hgsc.bcm.edu;broad.mit.edu	37	1	78408251	78408251	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEXN	NM_144573	exon13	c.1765delA	p.K589fs	.	.	138	10	120	0	.	92
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu	37	16	69727260	69727260	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NFAT5	NM_138713	exon13	c.3532delT	p.F1178fs	.	.	207	15	112	0	.	90
NFATC1	4772	hgsc.bcm.edu;broad.mit.edu	37	18	77227633	77227633	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NFATC1	NM_172390	exon8	c.2143delT	p.F715fs	.	.	149	10	77	0	.	290
NIM1	0	hgsc.bcm.edu;broad.mit.edu	37	5	43245927	43245927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_153361	exon2	c.50delC	p.A17fs	.	.	173	11	175	0	.	.
NIPBL	25836	hgsc.bcm.edu	37	5	36975946	36975946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NIPBL	NM_015384	exon9	c.G937A	p.D313N	.	.	94	2	82	0	.	293
NLN	57486	hgsc.bcm.edu;broad.mit.edu	37	5	65076057	65076057	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLN	NM_020726	exon5	c.610delA	p.K204fs	.	.	158	10	128	0	.	90
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	32449804	32449804	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRC4	NM_001199138	exon9	c.2813delA	p.N938fs	.	.	105	11	78	0	.	276
NLRC5	84166	hgsc.bcm.edu	37	16	57063748	57063748	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRC5	NM_032206	exon8	c.A2307G	p.L769L	.	.	100	4	106	0	.	159
NLRP14	338323	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7092523	7092523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRP14	NM_176822	exon12	c.G3266T	p.W1089L	.	.	74	22	52	0	.	295
NLRP2	55655	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	55508725	55508725	+	Missense_Mutation	SNP	C	C	A	rs61735074	byfrequency;alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRP2	NM_017852	exon12	c.C2920A	p.L974I	.	.	321	157	232	0	C|0.982;G|0.018	120
NMUR2	56923	bcgsc.ca	37	5	151771819	151771819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NMUR2	NM_020167	exon4	c.C1181A	p.P394Q	.	.	340	9	319	0	.	526
NOB1	28987	hgsc.bcm.edu	37	16	69788569	69788569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOB1	NM_014062	exon2	c.A124G	p.T42A	.	.	104	5	63	0	.	90
NOL9	79707	hgsc.bcm.edu;broad.mit.edu	37	1	6605171	6605171	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOL9	NM_024654	exon4	c.814delA	p.R272fs	.	.	110	10	151	0	.	515
NOP16	51491	hgsc.bcm.edu;broad.mit.edu	37	5	175812233	175812233	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOP16	NM_016391	exon4	c.382delG	p.E128fs	.	.	137	11	101	0	.	91
NOP2	4839	hgsc.bcm.edu	37	12	6672806	6672806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOP2	NM_001258309	exon8	c.T761C	p.L254P	.	.	97	3	96	0	.	92
NOP56	10528	hgsc.bcm.edu;broad.mit.edu	37	20	2634016	2634016	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOP56	NM_006392	exon3	c.185delA	p.E62fs	.	.	251	16	208	0	.	92
NOS3	4846	hgsc.bcm.edu;broad.mit.edu	37	7	150693569	150693569	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOS3	NM_001160111	exon3	c.348delC	p.G116fs	.	.	261	17	148	0	.	1011
NPR1	4881	hgsc.bcm.edu;broad.mit.edu	37	1	153654991	153654991	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NPR1	NM_000906	exon5	c.1189delA	p.K397fs	.	.	182	11	77	0	.	393
NR1H2	7376	hgsc.bcm.edu	37	19	50881832	50881832	+	Missense_Mutation	SNP	G	G	C	rs75450723		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NR1H2	NM_007121	exon6	c.G526C	p.E176Q	.	.	155	11	80	0	C|1.000;|0.000	186
NR1H2	7376	hgsc.bcm.edu;bcgsc.ca	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NR1H2	NM_007121	exon6	c.G519A	p.Q173Q	.	.	165	36	83	0	G|0.903;A|0.097	186
NR1H3	10062	hgsc.bcm.edu;broad.mit.edu	37	11	47283563	47283563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NR1H3	NM_001251934	exon7	c.1000delA	p.K334fs	.	.	163	10	95	0	.	228
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu	37	2	157184439	157184439	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NR4A2	NM_006186	exon5	c.1082delC	p.P361fs	.	.	202	12	138	0	.	189
NRCAM	4897	bcgsc.ca	37	7	107849909	107849909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NRCAM	NM_001037132	exon9	c.A1031T	p.N344I	.	.	129	5	109	0	.	156
NRCAM	4897	hgsc.bcm.edu	37	7	107866100	107866100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NRCAM	NM_001037132	exon7	c.A767G	p.E256G	.	.	84	2	60	0	.	156
NRG3	10718	bcgsc.ca	37	10	83635744	83635744	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NRG3	NM_001165972	exon1	c.648delA	p.P216fs	.	.	53	5	107	0	.	522
NRG3	10718	hgsc.bcm.edu;broad.mit.edu	37	10	84711320	84711320	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NRG3	NM_001010848	exon5	c.1150delA	p.K384fs	.	.	214	13	236	0	.	522
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu	37	11	64375286	64375286	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NRXN2	NM_015080	exon23	c.4521delC	p.P1507fs	.	.	146	12	103	0	.	232
NSMAF	8439	hgsc.bcm.edu	37	8	59522272	59522272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NSMAF	NM_001144772	exon10	c.A671G	p.K224R	.	.	85	4	62	0	.	91
NT5C2	22978	hgsc.bcm.edu	37	10	104849568	104849568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NT5C2	NM_012229	exon19	c.A1547G	p.D516G	.	.	134	3	185	0	.	90
NT5DC3	51559	hgsc.bcm.edu;broad.mit.edu	37	12	104208851	104208851	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NT5DC3	NM_001031701	exon2	c.257delT	p.F86fs	.	.	151	12	136	0	.	228
NTRK3	4916	bcgsc.ca	37	15	88472436	88472436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NTRK3	NM_001012338	exon17	c.A2119G	p.T707A	.	.	192	6	136	0	.	3538
NUB1	51667	hgsc.bcm.edu;broad.mit.edu	37	7	151052912	151052912	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUB1	NM_016118	exon6	c.546delA	p.L182fs	.	.	180	11	114	0	.	226
NUBPL	80224	hgsc.bcm.edu	37	14	32142559	32142559	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUBPL	NM_025152	exon5	c.383-2A>C	.	.	.	60	4	51	0	.	226
NUCB2	4925	bcgsc.ca	37	11	17336988	17336988	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUCB2	NM_005013	exon11	c.968delA	p.E323fs	.	.	144	14	123	1	.	90
NUCB2	4925	hgsc.bcm.edu;broad.mit.edu	37	11	17332420	17332420	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUCB2	NM_005013	exon7	c.532delA	p.K178fs	.	.	158	11	131	0	.	90
NUMB	8650	hgsc.bcm.edu;broad.mit.edu	37	14	73753987	73753987	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUMB	NM_001005744	exon9	c.486delT	p.F162fs	.	.	168	10	150	0	.	1062
NUP155	9631	hgsc.bcm.edu;broad.mit.edu	37	5	37309279	37309279	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP155	NM_153485	exon24	c.2719delA	p.I907fs	.	.	150	11	166	0	.	205
NUP205	23165	bcgsc.ca	37	7	135272402	135272402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP205	NM_015135	exon9	c.T1298C	p.I433T	.	.	199	6	111	0	.	207
NUP205	23165	bcgsc.ca	37	7	135304274	135304274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP205	NM_015135	exon29	c.A4067C	p.E1356A	.	.	234	9	129	1	.	207
NUP205	23165	hgsc.bcm.edu;broad.mit.edu	37	7	135311045	135311045	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP205	NM_015135	exon33	c.4729delG	p.G1577fs	.	.	132	10	91	0	.	207
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu	37	1	154031143	154031143	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP210L	NM_001159484	exon21	c.2877delT	p.F959fs	.	.	154	10	85	0	.	77
NUP214	8021	hgsc.bcm.edu	37	9	134073130	134073130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP214	NM_005085	exon29	c.A4249G	p.T1417A	.	.	89	4	87	0	.	1131
NXPE4	54827	hgsc.bcm.edu;broad.mit.edu	37	11	114450944	114450944	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001077639	exon5	c.1009delA	p.M337X	.	.	294	18	257	0	.	.
OAF	220323	hgsc.bcm.edu;broad.mit.edu	37	11	120097608	120097608	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OAF	NM_178507	exon3	c.450delG	p.Q150fs	.	.	147	11	76	0	.	68
OAS3	4940	hgsc.bcm.edu;broad.mit.edu	37	12	113402157	113402157	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OAS3	NM_006187	exon11	c.2347delT	p.F783fs	.	.	183	12	173	0	.	1
OBSCN	84033	bcgsc.ca	37	1	228434468	228434468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OBSCN	NM_001271223	exon14	c.G4273C	p.G1425R	.	.	339	12	172	1	.	403
OCSTAMP	128506	hgsc.bcm.edu;broad.mit.edu	37	20	45170221	45170221	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_080721	exon3	c.1393delG	p.D465fs	.	.	180	11	130	0	.	.
OMD	4958	hgsc.bcm.edu	37	9	95179318	95179318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OMD	NM_005014	exon2	c.T523C	p.S175P	.	.	142	4	109	0	.	206
OPN1MW2	728458	broad.mit.edu;bcgsc.ca	37	X	153453533	153453533	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001048181	exon2	c.387delG	p.E129fs	.	.	237	9	182	0	.	.
OPN3	23596	hgsc.bcm.edu;broad.mit.edu	37	1	241757938	241757938	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OPN3	NM_014322	exon4	c.1001delC	p.P334fs	.	.	176	11	116	0	.	92
OR10AD1	121275	hgsc.bcm.edu	37	12	48596875	48596875	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR10AD1	NM_001004134	exon1	c.G201T	p.L67L	.	.	233	8	189	0	.	69
OR10AD1	121275	hgsc.bcm.edu	37	12	48596877	48596877	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR10AD1	NM_001004134	exon1	c.C199T	p.L67L	.	.	227	11	193	0	.	69
OR10J5	127385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	159505581	159505581	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR10J5	NM_001004469	exon1	c.T217A	p.Y73N	.	.	206	41	116	0	.	71
OR11G2	390439	hgsc.bcm.edu	37	14	20666184	20666184	+	Silent	SNP	C	C	G	rs74538160		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR11G2	NM_001005503	exon1	c.C690G	p.G230G	.	.	190	13	163	0	.	70
OR11G2	390439	hgsc.bcm.edu;bcgsc.ca	37	14	20666182	20666182	+	Missense_Mutation	SNP	G	G	A	rs77471263		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR11G2	NM_001005503	exon1	c.G688A	p.G230S	.	.	189	22	164	0	.	70
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu	37	17	3100901	3100901	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR1A2	NM_012352	exon1	c.89delT	p.I30fs	.	.	141	10	141	0	.	70
OR1J2	26740	hgsc.bcm.edu	37	9	125273393	125273393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR1J2	NM_054107	exon1	c.A313T	p.I105L	.	.	160	11	116	0	.	72
OR2A14	135941	hgsc.bcm.edu	37	7	143826732	143826732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR2A14	NM_001001659	exon1	c.T527A	p.F176Y	.	.	294	20	232	0	.	90
OR2D2	120776	hgsc.bcm.edu;broad.mit.edu	37	11	6913546	6913546	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR2D2	NM_003700	exon1	c.186delT	p.F62fs	.	.	215	13	203	0	.	501
OR2L5	81466	hgsc.bcm.edu;broad.mit.edu	37	1	248186140	248186140	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001258284	exon1	c.891delG	p.M297fs	.	.	162	12	109	0	.	.
OR2T27	403239	bcgsc.ca	37	1	248814081	248814081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR2T27	NM_001001824	exon1	c.T105G	p.F35L	.	.	452	18	233	0	.	47
OR2T8	343172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248084801	248084801	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR2T8	NM_001005522	exon1	c.482delC	p.T161fs	.	.	200	16	136	0	.	68
OR4D2	124538	hgsc.bcm.edu	37	17	56247313	56247313	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR4D2	NM_001004707	exon1	c.T297C	p.G99G	.	.	100	4	46	0	.	114
OR4F5	79501	broad.mit.edu;bcgsc.ca	37	1	69617	69617	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR4F5	NM_001005484	exon1	c.527delG	p.R176fs	.	.	1024	10	961	0	.	47
OR4F5	79501	hgsc.bcm.edu	37	1	69453	69453	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR4F5	NM_001005484	exon1	c.363delG	p.K121fs	.	.	26	14	17	0	.	47
OR4K17	390436	hgsc.bcm.edu;broad.mit.edu	37	14	20586015	20586015	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR4K17	NM_001004715	exon1	c.450delT	p.A150fs	.	.	177	11	146	0	.	71
OR56B1	387748	hgsc.bcm.edu;broad.mit.edu	37	11	5758619	5758619	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR56B1	NM_001005180	exon1	c.873delC	p.I291fs	.	.	147	10	120	0	.	69
OR5M1	390168	hgsc.bcm.edu	37	11	56380550	56380550	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR5M1	NM_001004740	exon1	c.T429G	p.C143W	.	.	250	8	187	0	.	94
OR6A2	8590	hgsc.bcm.edu;bcgsc.ca	37	11	6816516	6816516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR6A2	NM_003696	exon1	c.A424G	p.S142G	.	.	81	4	66	0	.	94
OR6C70	390327	hgsc.bcm.edu;bcgsc.ca	37	12	55863303	55863303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR6C70	NM_001005499	exon1	c.T620C	p.V207A	.	.	102	6	66	0	.	69
OR7C2	26658	hgsc.bcm.edu;broad.mit.edu	37	19	15052711	15052711	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR7C2	NM_012377	exon1	c.411delC	p.N137fs	.	.	204	14	191	0	.	71
OR8A1	390275	hgsc.bcm.edu;broad.mit.edu	37	11	124440280	124440280	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR8A1	NM_001005194	exon1	c.316delA	p.K106fs	.	.	191	13	125	0	.	69
ORAI1	84876	hgsc.bcm.edu	37	12	122064777	122064777	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ORAI1	NM_032790	exon1	c.C130G	p.P44A	.	.	27	5	24	0	.	68
ORC6	23594	bcgsc.ca	37	16	46726360	46726360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ORC6	NM_014321	exon3	c.T262C	p.C88R	.	.	79	5	100	0	.	205
OS9	10956	hgsc.bcm.edu;broad.mit.edu	37	12	58111735	58111735	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OS9	NM_001261420	exon10	c.1131delA	p.T377fs	.	.	172	12	123	0	.	493
OS9	10956	hgsc.bcm.edu;broad.mit.edu	37	12	58114666	58114666	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OS9	NM_006812	exon15	c.1978delG	p.G660fs	.	.	154	11	122	0	.	493
OSBPL2	9885	hgsc.bcm.edu	37	20	60861769	60861769	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL2	NM_144498	exon11	c.1125+2T>C	.	.	.	76	4	58	0	.	69
OSBPL3	26031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24911688	24911688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL3	NM_145321	exon3	c.G97A	p.D33N	.	.	114	46	90	0	.	204
OSBPL8	114882	hgsc.bcm.edu;broad.mit.edu	37	12	76749732	76749732	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL8	NM_020841	exon24	c.2607delA	p.K869fs	.	.	149	12	120	0	.	69
OSBPL8	114882	hgsc.bcm.edu;broad.mit.edu	37	12	76780366	76780366	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL8	NM_020841	exon13	c.1427delA	p.K476fs	.	.	229	16	143	0	.	69
OSTM1	28962	hgsc.bcm.edu	37	6	108370618	108370618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSTM1	NM_014028	exon5	c.A788G	p.N263S	.	.	100	4	82	0	.	68
OSTM1	28962	hgsc.bcm.edu;broad.mit.edu	37	6	108372297	108372297	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSTM1	NM_014028	exon4	c.721delA	p.M241X	.	.	221	14	154	0	.	68
OTOF	9381	hgsc.bcm.edu;broad.mit.edu	37	2	26724640	26724640	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OTOF	NM_194248	exon8	c.747delG	p.G249fs	.	.	196	12	147	0	.	135
OTOL1	131149	hgsc.bcm.edu	37	3	161221375	161221375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001080440	exon4	c.T1079C	p.I360T	.	.	121	2	64	0	.	.
OTUD4	54726	bcgsc.ca	37	4	146058634	146058634	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OTUD4	NM_001102653	exon21	c.3098delG	p.G1033fs	.	.	84	4	142	0	.	565
OVCH1	341350	hgsc.bcm.edu	37	12	29630051	29630051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OVCH1	NM_183378	exon12	c.A1361G	p.E454G	.	.	90	2	86	0	.	210
OVCH2	341277	hgsc.bcm.edu;broad.mit.edu	37	11	7721868	7721868	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OVCH2	NM_198185	exon7	c.876delC	p.P292fs	.	.	208	13	188	0	.	68
P2RY2	5029	bcgsc.ca	37	11	72945343	72945343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	P2RY2	NM_176071	exon3	c.G139T	p.G47W	.	.	406	11	239	1	.	503
PA2G4	5036	hgsc.bcm.edu;broad.mit.edu	37	12	56498590	56498590	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PA2G4	NM_006191	exon1	c.69delG	p.M23fs	.	.	166	11	169	0	.	68
PA2G4P4	647033	bcgsc.ca	37	3	156528400	156528400	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	115	5	91	0	.	.
PABPC3	5042	hgsc.bcm.edu;broad.mit.edu	37	13	25670906	25670906	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PABPC3	NM_030979	exon1	c.570delC	p.F190fs	.	.	112	10	166	0	.	72
PAFAH1B1	5048	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	2569341	2569341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAFAH1B1	NM_000430	exon4	c.149delT	p.L50fs	.	.	114	12	123	0	.	69
PAGE1	8712	broad.mit.edu;bcgsc.ca	37	X	49454097	49454097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAGE1	NM_003785	exon5	c.342delG	p.G114fs	.	.	92	9	82	0	.	109
PAN3	255967	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28854573	28854573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAN3	NM_175854	exon16	c.G2214C	p.R738S	.	.	75	49	75	0	.	69
PAPPA2	60676	hgsc.bcm.edu	37	1	176708893	176708893	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAPPA2	NM_020318	exon13	c.T3930C	p.S1310S	.	.	124	3	60	0	.	548
PARP1	142	bcgsc.ca	37	1	226570841	226570841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PARP1	NM_001618	exon8	c.A1055G	p.K352R	.	.	144	6	100	0	.	727
PARP14	54625	hgsc.bcm.edu;broad.mit.edu	37	3	122399784	122399784	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PARP14	NM_017554	exon1	c.54delC	p.D18fs	.	.	141	10	137	0	.	525
PARVA	55742	hgsc.bcm.edu;broad.mit.edu	37	11	12499491	12499491	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PARVA	NM_018222	exon4	c.515delT	p.L172fs	.	.	175	11	134	0	.	93
PARVG	64098	hgsc.bcm.edu	37	22	44587943	44587943	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PARVG	NM_001137606	exon8	c.T519C	p.G173G	.	.	82	4	53	0	.	90
PATZ1	23598	hgsc.bcm.edu;broad.mit.edu	37	22	31723029	31723029	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PATZ1	NM_014323	exon5	c.1912delG	p.D638fs	.	.	186	13	126	0	.	590
PAX5	5079	hgsc.bcm.edu;broad.mit.edu	37	9	37020769	37020769	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PAX5,NS,lymphoid_neoplasm,+1	PAX5	NM_016734	exon2	c.76delG	p.V26fs	.	.	141	11	152	0	.	1851
PAX9	5083	hgsc.bcm.edu;bcgsc.ca	37	14	37132384	37132384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAX9	NM_006194	exon3	c.G287A	p.G96D	.	.	186	11	112	0	.	228
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu	37	3	52712558	52712558	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PBRM1	NM_018313	exon3	c.194delG	p.G65fs	.	.	150	10	130	0	.	575
PCDH17	27253	bcgsc.ca	37	13	58206768	58206768	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDH17	NM_001040429	exon1	c.88delG	p.G30fs	.	.	60	6	99	0	.	97
PCDH7	5099	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30921790	30921790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDH7	NM_032457	exon2	c.A3190G	p.T1064A	.	.	188	67	168	1	.	229
PCDH8	5100	hgsc.bcm.edu;bcgsc.ca	37	13	53418699	53418699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDH8	NM_002590	exon3	c.T3209C	p.V1070A	.	.	96	4	123	0	.	153
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu	37	5	140214086	140214086	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDHA7	NM_031852	exon1	c.118delA	p.K40fs	.	.	185	11	156	0	.	94
PCDHB12	56124	hgsc.bcm.edu;broad.mit.edu	37	5	140588664	140588664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDHB12	NM_018932	exon1	c.185delG	p.R62fs	.	.	164	11	119	0	.	93
PCDHB15	56121	bcgsc.ca	37	5	140626024	140626024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDHB15	NM_018935	exon1	c.A878G	p.E293G	.	.	102	4	67	0	.	156
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu	37	5	140515047	140515047	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDHB5	NM_015669	exon1	c.31delA	p.K11fs	.	.	230	14	202	0	.	95
PCED1B	91523	hgsc.bcm.edu;broad.mit.edu	37	12	47630043	47630043	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	FAM113B,neck,malignant_melanoma,+2	.	NM_138371	exon2	c.1197delT	p.G399fs	.	.	188	12	129	0	.	.
PCNT	5116	bcgsc.ca	37	21	47855966	47855966	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCNT	NM_006031	exon39	c.8901delC	p.H2967fs	.	.	46	5	73	0	.	141
PCNX	22990	hgsc.bcm.edu;broad.mit.edu	37	14	71522272	71522272	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCNX	NM_014982	exon25	c.4629delA	p.R1543fs	.	.	193	12	171	0	.	91
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu	37	20	17208071	17208071	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCSK2	NM_002594	exon1	c.121delG	p.G41fs	.	.	207	14	188	0	.	157
PCSK9	255738	hgsc.bcm.edu;broad.mit.edu	37	1	55523861	55523861	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCSK9	NM_174936	exon8	c.1333delC	p.P445fs	.	.	174	12	170	0	.	93
PDCD11	22984	hgsc.bcm.edu	37	10	105177688	105177688	+	Missense_Mutation	SNP	A	A	G	rs191892747		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDCD11	NM_014976	exon14	c.A1910G	p.Q637R	.	.	102	4	114	0	A|0.999;G|0.000	275
PDE1B	5153	hgsc.bcm.edu	37	12	54968906	54968906	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDE1B	NM_000924	exon11	c.T1089C	p.S363S	.	.	96	4	89	0	.	92
PDE1C	5137	bcgsc.ca	37	7	31855579	31855579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDE1C	NM_001191058	exon16	c.A1952T	p.N651I	.	.	301	8	225	0	.	94
PDE8B	8622	bcgsc.ca	37	5	76704875	76704875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDE8B	NM_003719	exon14	c.T1523C	p.L508P	.	.	67	4	37	0	.	90
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu	37	4	55146491	55146491	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDGFRA	NM_006206	exon16	c.2165delT	p.I722fs	.	.	185	12	174	0	.	9497
PDHX	8050	hgsc.bcm.edu	37	11	35016619	35016619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDHX	NM_003477	exon11	c.T1406C	p.V469A	.	.	99	4	84	0	.	226
PDHX	8050	hgsc.bcm.edu;broad.mit.edu	37	11	34953022	34953022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDHX	NM_003477	exon2	c.232delA	p.K78fs	.	.	211	14	188	0	.	226
PDLIM7	9260	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176910650	176910650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDLIM7	NM_005451	exon13	c.G1369C	p.V457L	.	.	277	104	206	0	.	153
PDP1	54704	hgsc.bcm.edu;broad.mit.edu	37	8	94934597	94934597	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDP1	NM_001161780	exon3	c.385delA	p.K129fs	.	.	200	13	147	0	.	229
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28494372	28494372	+	Missense_Mutation	SNP	C	C	A	rs192902098		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDX1	NM_000209	exon1	c.C97A	p.P33T	.	.	11	5	31	0	C|0.997;A|0.003	514
PDYN	5173	hgsc.bcm.edu;broad.mit.edu	37	20	1961108	1961108	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDYN	NM_001190898	exon4	c.626delG	p.G209fs	.	.	222	16	189	0	.	92
PEG10	23089	hgsc.bcm.edu	37	7	94293774	94293774	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PEG10	NM_001172438	exon2	c.T1134C	p.G378G	.	.	180	6	96	0	.	23
PELI3	246330	hgsc.bcm.edu	37	11	66243164	66243164	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PELI3	NM_145065	exon8	c.T936C	p.A312A	.	.	217	7	127	0	.	91
PFAS	5198	hgsc.bcm.edu;broad.mit.edu	37	17	8172524	8172524	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PFAS	NM_012393	exon28	c.3959delC	p.S1320fs	.	.	114	11	145	0	.	94
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu	37	2	197737220	197737220	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PGAP1	NM_024989	exon18	c.1673delA	p.N558fs	.	.	173	11	138	0	.	93
PHACTR1	221692	hgsc.bcm.edu	37	6	13206215	13206215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_030948	exon8	c.T833C	p.V278A	.	.	126	5	99	0	.	.
PHACTR4	65979	hgsc.bcm.edu	37	1	28818190	28818190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHACTR4	NM_023923	exon11	c.T1937C	p.L646P	.	.	118	3	109	0	.	90
PHB	5245	hgsc.bcm.edu	37	17	47486764	47486764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHB	NM_002634	exon4	c.A322G	p.T108A	.	.	97	5	60	0	.	90
PHB	5245	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	47489105	47489105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHB	NM_002634	exon3	c.A185G	p.Q62R	.	.	91	26	84	0	.	90
PHF21A	51317	hgsc.bcm.edu;broad.mit.edu	37	11	45957241	45957241	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHF21A	NM_001101802	exon17	c.1731delA	p.K577fs	.	.	148	10	162	0	.	92
PHF3	23469	hgsc.bcm.edu;broad.mit.edu	37	6	64395267	64395267	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHF3	NM_015153	exon3	c.1644delA	p.R548fs	.	.	185	11	163	0	.	229
PHGDH	26227	hgsc.bcm.edu;broad.mit.edu	37	1	120266001	120266001	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHGDH	NM_006623	exon3	c.293delC	p.T98fs	.	.	242	16	210	0	.	91
PHLDB2	90102	hgsc.bcm.edu	37	3	111639163	111639163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHLDB2	NM_001134437	exon6	c.A1979G	p.Q660R	.	.	109	3	81	0	.	96
PHOX2A	401	hgsc.bcm.edu;broad.mit.edu	37	11	71950817	71950817	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHOX2A	NM_005169	exon3	c.831delC	p.P277fs	.	.	182	14	108	0	.	90
PHYH	5264	hgsc.bcm.edu;broad.mit.edu	37	10	13336580	13336580	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHYH	NM_006214	exon4	c.262delA	p.I88fs	.	.	166	10	158	0	.	90
PI4K2B	55300	hgsc.bcm.edu	37	4	25254053	25254053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PI4K2B	NM_018323	exon2	c.T379C	p.S127P	.	.	113	5	86	0	.	229
PIAS2	9063	hgsc.bcm.edu;broad.mit.edu	37	18	44444168	44444168	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIAS2	NM_173206	exon3	c.543delT	p.F181fs	.	.	146	10	102	0	.	662
PIDD	55367	hgsc.bcm.edu;broad.mit.edu	37	11	799358	799358	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIDD	NM_145886	exon16	c.2682delC	p.P894fs	.	.	209	13	205	0	.	205
PIEZO1	9780	hgsc.bcm.edu	37	16	88786816	88786816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001142864	exon41	c.A5926G	p.I1976V	.	.	96	4	81	0	.	.
PIGA	5277	hgsc.bcm.edu;broad.mit.edu	37	X	15339659	15339659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIGA	NM_002641	exon6	c.1424delG	p.G475fs	.	.	177	12	140	0	.	226
PIGN	23556	hgsc.bcm.edu;broad.mit.edu	37	18	59752471	59752471	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIGN	NM_176787	exon26	c.2397delT	p.F799fs	.	.	192	12	155	0	.	227
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu	37	1	204419065	204419065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIK3C2B	NM_002646	exon14	c.2147delC	p.P716fs	.	.	217	14	122	0	.	1310
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu	37	18	39593452	39593452	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIK3C3	NM_002647	exon11	c.1217delA	p.E406fs	.	.	257	16	215	0	.	1312
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	67575562	67575565	+	Splice_Site	DEL	GTTT	GTTT	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	GTTT	GTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIK3R1	.	.	.	.	.	.	163	34	129	0	.	4332
PITPNM1	9600	hgsc.bcm.edu;bcgsc.ca	37	11	67261213	67261213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PITPNM1	NM_004910	exon21	c.T3104C	p.V1035A	.	.	195	10	114	0	.	227
PITRM1	10531	bcgsc.ca	37	10	3189381	3189381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PITRM1	NM_001242307	exon20	c.C2300A	p.P767Q	.	.	119	5	110	0	.	91
PKN1	5585	hgsc.bcm.edu;broad.mit.edu	37	19	14561143	14561143	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PKN1	NM_213560	exon5	c.642delG	p.L214fs	.	.	228	16	221	0	.	1481
PKN2	5586	hgsc.bcm.edu;broad.mit.edu	37	1	89206728	89206728	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PKN2	NM_006256	exon2	c.106delT	p.F36fs	.	.	136	11	109	0	.	522
PLAU	5328	hgsc.bcm.edu;broad.mit.edu	37	10	75673438	75673438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLAU	NM_002658	exon7	c.602delG	p.R201fs	.	.	266	16	190	0	.	118
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu	37	20	8130989	8130989	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCB1	NM_015192	exon2	c.148delT	p.F50fs	.	.	184	11	125	0	.	297
PLCB3	5331	hgsc.bcm.edu;broad.mit.edu	37	11	64031017	64031017	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCB3	NM_000932	exon20	c.2403delG	p.E801fs	.	.	169	11	79	0	.	228
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu	37	16	81939079	81939079	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCG2	NM_002661	exon15	c.1434delG	p.Q478fs	.	.	239	16	175	0	.	892
PLCL1	5334	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198950766	198950766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCL1	NM_006226	exon2	c.T2525A	p.F842Y	.	.	205	78	164	0	.	228
PLEKHA5	54477	hgsc.bcm.edu	37	12	19475253	19475253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLEKHA5	NM_001256470	exon19	c.A2227G	p.S743G	.	.	54	4	18	0	.	227
PLEKHA7	144100	hgsc.bcm.edu;broad.mit.edu	37	11	16816462	16816462	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLEKHA7	NM_175058	exon18	c.2513delA	p.N838fs	.	.	141	10	122	0	.	227
PLEKHG4	25894	hgsc.bcm.edu;broad.mit.edu	37	16	67316441	67316441	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLEKHG4	NM_001129728	exon10	c.1289delG	p.R430fs	.	.	157	10	111	0	.	92
PLIN2	123	hgsc.bcm.edu	37	9	19123604	19123604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLIN2	NM_001122	exon4	c.A268G	p.I90V	.	.	96	3	130	0	.	92
PLK2	10769	hgsc.bcm.edu;bcgsc.ca	37	5	57753128	57753128	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLK2	NM_006622	exon7	c.G888A	p.R296R	.	.	57	4	32	0	.	409
PLOD2	5352	hgsc.bcm.edu;broad.mit.edu	37	3	145806385	145806385	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLOD2	NM_182943	exon9	c.993delT	p.F331fs	.	.	164	12	110	0	.	92
PLSCR5	389158	hgsc.bcm.edu;broad.mit.edu	37	3	146311885	146311885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001085420	exon4	c.275delA	p.N92fs	.	.	141	10	116	0	.	.
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu	37	12	94642030	94642030	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLXNC1	NM_005761	exon14	c.2620delA	p.K874fs	.	.	150	10	131	0	.	92
PM20D2	135293	hgsc.bcm.edu;broad.mit.edu	37	6	89864571	89864571	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PM20D2	NM_001010853	exon4	c.862delA	p.K288fs	.	.	216	13	180	0	.	68
PNLDC1	154197	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	160241522	160241522	+	Silent	SNP	G	G	A	rs144377714	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNLDC1	NM_173516	exon19	c.G1536A	p.A512A	.	.	126	37	171	0	G|1.000;A|0.000	90
PNLIPRP2	5408	bcgsc.ca	37	10	118383561	118383561	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNLIPRP2	.	.	.	.	.	.	60	6	77	0	.	67
PNLIPRP3	119548	hgsc.bcm.edu	37	10	118196248	118196248	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNLIPRP3	NM_001011709	exon2	c.A75G	p.L25L	.	.	94	3	88	0	.	91
PNMA5	114824	hgsc.bcm.edu;broad.mit.edu	37	X	152159005	152159005	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNMA5	NM_001103150	exon2	c.1138delC	p.Q380fs	.	.	147	10	97	0	.	131
PNN	5411	hgsc.bcm.edu;broad.mit.edu	37	14	39648419	39648419	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNN	NM_002687	exon7	c.623delT	p.L208fs	.	.	146	11	107	0	.	91
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu	37	9	140356679	140356679	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNPLA7	NM_001098537	exon31	c.3597delC	p.P1199fs	.	.	167	10	166	0	.	91
POLA1	5422	hgsc.bcm.edu	37	X	24741325	24741325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLA1	NM_016937	exon11	c.A1123G	p.S375G	.	.	180	7	139	0	.	229
POLA1	5422	hgsc.bcm.edu	37	X	24844595	24844595	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLA1	NM_016937	exon32	c.C3595T	p.Q1199X	.	.	73	4	77	0	.	229
POLA1	5422	hgsc.bcm.edu;broad.mit.edu	37	X	24839602	24839602	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLA1	NM_016937	exon31	c.3445delA	p.K1149fs	.	.	191	15	173	0	.	229
POLDIP3	84271	hgsc.bcm.edu	37	22	42991558	42991558	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLDIP3	NM_032311	exon6	c.T876C	p.T292T	.	.	170	4	146	0	.	90
POLG	5428	hgsc.bcm.edu;broad.mit.edu	37	15	89860003	89860003	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLG	NM_002693	exon23	c.3699delA	p.K1233fs	.	.	168	11	192	0	.	228
POLQ	10721	hgsc.bcm.edu;broad.mit.edu	37	3	121238748	121238748	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLQ	NM_199420	exon9	c.1438delC	p.R480fs	.	.	169	11	117	0	.	664
POLR1A	25885	hgsc.bcm.edu	37	2	86297358	86297358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLR1A	NM_015425	exon13	c.T1649C	p.L550P	.	.	186	3	139	0	.	93
POTEG	404785	broad.mit.edu;bcgsc.ca	37	14	19553523	19553523	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POTEG	NM_001005356	exon1	c.107delG	p.R36fs	.	.	2110	61	1723	0	.	1
PPAP2B	8613	hgsc.bcm.edu;broad.mit.edu	37	1	56990119	56990119	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPAP2B	NM_003713	exon3	c.405delT	p.F135fs	.	.	153	10	109	0	.	91
PPAT	5471	hgsc.bcm.edu;broad.mit.edu	37	4	57272752	57272752	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPAT	NM_002703	exon3	c.311delA	p.N104fs	.	.	166	12	136	0	.	90
PPFIA3	8541	broad.mit.edu;bcgsc.ca	37	19	49636360	49636360	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPFIA3	NM_003660	exon8	c.982delA	p.K328fs	.	.	63	7	75	0	.	226
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu	37	6	36823778	36823778	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPIL1	NM_016059	exon4	c.312delG	p.G104fs	.	.	161	11	133	0	.	91
PPIL4	85313	hgsc.bcm.edu;broad.mit.edu	37	6	149833366	149833366	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPIL4	NM_139126	exon12	c.1152delA	p.K384fs	.	.	328	20	250	0	.	90
PPM1E	22843	hgsc.bcm.edu	37	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPM1E	NM_014906	exon1	c.G96A	p.E32E	.	.	138	21	152	0	.	291
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu	37	22	22277539	22277539	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPM1F	NM_014634	exon8	c.1291delC	p.Q431fs	.	.	184	11	130	0	.	292
PPOX	5498	hgsc.bcm.edu;broad.mit.edu	37	1	161140731	161140731	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPOX	NM_000309	exon12	c.1283delA	p.Q428fs	.	.	129	10	93	0	.	91
PPP1R12B	4660	hgsc.bcm.edu	37	1	202394742	202394742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP1R12B	NM_002481	exon4	c.A590G	p.Q197R	.	.	165	6	93	0	.	229
PPP1R1A	5502	broad.mit.edu;bcgsc.ca	37	12	54982251	54982251	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP1R1A	NM_006741	exon1	c.22delC	p.R8fs	.	.	83	9	151	0	.	226
PPP1R7	5510	hgsc.bcm.edu	37	2	242089946	242089946	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP1R7	NM_002712	exon1	c.G36A	p.S12S	.	.	78	4	93	0	.	660
PPP2R3A	5523	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	135721003	135721003	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP2R3A	NM_002718	exon2	c.T663C	p.D221D	.	.	34	14	34	0	.	662
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu	37	6	42975751	42975751	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP2R5D	NM_006245	exon7	c.805delT	p.F269fs	.	.	191	12	141	0	.	1082
PPP3CB	5532	hgsc.bcm.edu;broad.mit.edu	37	10	75230481	75230481	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP3CB	NM_001142354	exon8	c.946delT	p.S316fs	.	.	166	10	127	0	.	226
PRDM1	639	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106536122	106536122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRDM1	NM_001198	exon2	c.C89T	p.A30V	.	.	172	58	130	0	.	862
PRDM1	639	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106553019	106553019	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRDM1	NM_001198	exon5	c.C984T	p.P328P	.	.	44	18	26	0	.	862
PREX1	57580	hgsc.bcm.edu;broad.mit.edu	37	20	47256419	47256419	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PREX1	NM_020820	exon30	c.3789delA	p.K1263fs	.	.	185	11	131	0	.	231
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	.	.	203	14	137	0	.	90
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148559833	148559833	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRMT10	NM_138364	exon12	c.A2388G	p.E796E	.	.	86	4	115	0	.	91
PROSC	11212	hgsc.bcm.edu	37	8	37633463	37633463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PROSC	NM_007198	exon7	c.T625C	p.C209R	.	.	84	3	51	0	.	90
PROSER2	254427	bcgsc.ca	37	10	11911734	11911734	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_153256	exon4	c.637delC	p.P213fs	.	.	50	5	68	0	.	.
PROX1	5629	hgsc.bcm.edu;broad.mit.edu	37	1	214178556	214178556	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PROX1	NM_001270616	exon3	c.1774delT	p.F592fs	.	.	180	14	106	0	.	654
PRPF6	24148	hgsc.bcm.edu;bcgsc.ca	37	20	62614445	62614445	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRPF6	NM_012469	exon2	c.T117C	p.D39D	.	.	117	5	89	0	.	70
PRPF8	10594	bcgsc.ca	37	17	1576692	1576692	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRPF8	NM_006445	exon23	c.3616delG	p.E1206fs	.	.	46	5	71	0	.	525
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu	37	1	171527040	171527040	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_015172	exon19	c.5783delC	p.A1928fs	.	.	280	19	189	0	.	.
PRSS36	146547	hgsc.bcm.edu	37	16	31152016	31152016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRSS36	NM_001258291	exon13	c.T1964C	p.L655P	.	.	194	4	133	0	.	91
PSD	5662	broad.mit.edu;bcgsc.ca	37	10	104176574	104176574	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSD	NM_001270965	exon3	c.222delC	p.P74fs	.	.	76	8	91	0	.	272
PSG6	5675	hgsc.bcm.edu	37	19	43420570	43420570	+	Missense_Mutation	SNP	A	A	C	rs201730074	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSG6	NM_001031850	exon2	c.T134G	p.V45G	.	.	103	7	95	0	.	92
PSMD12	5718	hgsc.bcm.edu;broad.mit.edu	37	17	65340878	65340878	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSMD12	NM_002816	exon9	c.927delT	p.F309fs	.	.	263	16	217	0	.	90
PSME4	23198	hgsc.bcm.edu	37	2	54133824	54133824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSME4	NM_014614	exon26	c.A2854G	p.T952A	.	.	95	4	91	0	.	275
PSME4	23198	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54128608	54128608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSME4	NM_014614	exon28	c.C3164G	p.A1055G	.	.	106	43	93	0	.	275
PSRC1	84722	hgsc.bcm.edu;broad.mit.edu	37	1	109824582	109824582	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSRC1	NM_001032291	exon4	c.178delC	p.Q60fs	.	.	169	11	106	0	.	90
PTCHD1	139411	hgsc.bcm.edu	37	X	23411677	23411677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PTCHD1,NS,carcinoma,+1	PTCHD1	NM_173495	exon3	c.T2042C	p.V681A	.	.	114	2	74	0	.	135
PTEN	5728	bcgsc.ca	37	10	89725220	89725220	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PTEN,brain,glioma,+1	PTEN	NM_000314	exon9	c.1203delA	p.T401fs	.	.	189	5	261	0	.	17735
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89717725	89717725	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon7	c.T750A	p.C250X	.	.	74	49	124	0	.	17735
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu	37	9	114355220	114355220	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTGR1	NM_001146108	exon4	c.195delG	p.G65fs	.	.	211	15	135	0	.	90
PTK2	5747	hgsc.bcm.edu	37	8	141675017	141675017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTK2	NM_005607	exon31	c.A3011G	p.E1004G	.	.	123	3	89	0	.	1517
PTK7	5754	hgsc.bcm.edu;broad.mit.edu	37	6	43100230	43100230	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTK7	NM_001270398	exon7	c.1057delC	p.P353fs	.	.	170	15	157	0	.	1493
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu	37	4	87655581	87655581	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPN13	NM_006264	exon13	c.1984delT	p.F662fs	.	.	197	12	157	0	.	230
PTPN13	5783	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	87556466	87556466	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPN13	NM_006264	exon2	c.A57G	p.E19E	.	.	87	38	97	0	.	230
PTPN23	25930	bcgsc.ca	37	3	47454400	47454400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPN23	NM_015466	exon25	c.C4636A	p.P1546T	.	.	320	12	210	0	.	227
PTPRC	5788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	198678836	198678836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRC	NM_002838	exon11	c.A1054G	p.K352E	.	.	189	130	86	0	.	295
PTPRM	5797	hgsc.bcm.edu	37	18	8085685	8085685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRM	NM_001105244	exon10	c.T1568C	p.V523A	.	.	147	3	106	0	.	228
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu	37	7	157926551	157926551	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRN2	NM_130843	exon9	c.1374delG	p.G458fs	.	.	130	10	97	0	.	295
PTPRN	5798	hgsc.bcm.edu	37	2	220159739	220159739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRN	NM_002846	exon19	c.A2633G	p.E878G	.	.	105	4	117	0	.	229
PTPRS	5802	hgsc.bcm.edu;bcgsc.ca	37	19	5258114	5258114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRS	NM_002850	exon8	c.A620G	p.E207G	.	.	137	5	149	0	.	357
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu	37	20	41306553	41306553	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRT	NM_007050	exon7	c.1106delG	p.G369fs	.	.	178	12	126	0	.	664
PTS	5805	hgsc.bcm.edu;broad.mit.edu	37	11	112101391	112101391	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTS	NM_000317	exon4	c.229delA	p.K77fs	.	.	136	10	83	0	.	90
PTTG1	9232	hgsc.bcm.edu;broad.mit.edu	37	5	159854837	159854837	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTTG1	NM_004219	exon5	c.486delC	p.G162fs	.	.	165	10	134	0	.	227
PUM1	9698	hgsc.bcm.edu;broad.mit.edu	37	1	31532353	31532353	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PUM1	NM_014676	exon2	c.61delC	p.H21fs	.	.	129	11	97	0	.	92
PVRL2	5819	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	45375206	45375206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PVRL2	NM_002856	exon3	c.C575T	p.A192V	.	.	114	16	102	0	.	90
PXDN	7837	hgsc.bcm.edu;broad.mit.edu	37	2	1670061	1670061	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PXDN	NM_012293	exon10	c.1216delG	p.D406fs	.	.	288	18	259	0	.	166
PYGM	5837	hgsc.bcm.edu;broad.mit.edu	37	11	64521090	64521090	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PYGM	NM_005609	exon11	c.1304delG	p.G435fs	.	.	151	10	117	0	.	92
PYROXD2	84795	hgsc.bcm.edu;broad.mit.edu	37	10	100152700	100152700	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PYROXD2	NM_032709	exon9	c.926delA	p.K309fs	.	.	156	10	219	0	.	90
PZP	5858	bcgsc.ca	37	12	9307374	9307374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PZP	NM_002864	exon29	c.A3612C	p.Q1204H	.	.	291	10	232	0	.	157
RAB11FIP3	9727	hgsc.bcm.edu;broad.mit.edu	37	16	538888	538888	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAB11FIP3	NM_014700	exon5	c.1153delG	p.G385fs	.	.	140	12	117	0	.	90
RAB1A	5861	hgsc.bcm.edu;broad.mit.edu	37	2	65316146	65316146	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAB1A	NM_004161	exon5	c.347delA	p.N116fs	.	.	154	10	124	0	.	227
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu	37	11	73431914	73431914	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAB6A	NM_002869	exon3	c.160delA	p.T54fs	.	.	163	12	74	0	.	227
RACGAP1	29127	hgsc.bcm.edu;broad.mit.edu	37	12	50399098	50399098	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RACGAP1	NM_013277	exon6	c.366delA	p.K122fs	.	.	146	10	146	0	.	227
RAD21L1	642636	bcgsc.ca	37	20	1214815	1214815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001136566	exon5	c.T455C	p.I152T	.	.	310	8	266	0	.	.
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu	37	2	17698475	17698475	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAD51AP2	NM_001099218	exon1	c.1208delT	p.L403X	.	.	180	14	131	0	.	23
RAD51D	5892	hgsc.bcm.edu;broad.mit.edu	37	17	33434027	33434027	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAD51D	NM_001142571	exon5	c.520delA	p.T174fs	.	.	122	10	104	0	.	228
RAD9A	5883	hgsc.bcm.edu;broad.mit.edu	37	11	67164988	67164988	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAD9A	NM_004584	exon11	c.1134delC	p.G378fs	.	.	258	16	147	0	.	227
RADIL	55698	hgsc.bcm.edu;broad.mit.edu	37	7	4841575	4841575	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RADIL	NM_018059	exon12	c.2551delC	p.L851fs	.	.	128	10	88	0	.	994
RAI1	10743	bcgsc.ca	37	17	17697099	17697099	+	Silent	SNP	G	G	A	rs11078398	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAI1	NM_030665	exon3	c.G837A	p.Q279Q	.	.	117	27	91	17	G|0.457;A|0.543	91
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu	37	20	20493319	20493319	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RALGAPA2	NM_020343	exon32	c.4694delT	p.L1565fs	.	.	189	13	152	0	.	24
RALYL	138046	hgsc.bcm.edu	37	8	85097244	85097244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RALYL	NM_001100391	exon1	c.G11C	p.R4P	.	.	174	7	160	0	.	23
RANBP2	5903	hgsc.bcm.edu	37	2	109392277	109392277	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RANBP2	NM_006267	exon24	c.A8382G	p.E2794E	.	.	99	4	83	0	.	675
RANGAP1	5905	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41645369	41645369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RANGAP1	NM_002883	exon15	c.G1659T	p.K553N	.	.	101	17	91	0	.	90
RAPGEF1	2889	hgsc.bcm.edu	37	9	134514137	134514137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF1	NM_198679	exon5	c.T539C	p.L180P	.	.	200	4	142	0	.	849
RAPGEF2	9693	bcgsc.ca	37	4	160267961	160267961	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF2	NM_014247	exon19	c.3040delA	p.K1014fs	.	.	55	6	99	0	.	637
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu	37	4	160273871	160273871	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF2	NM_014247	exon21	c.3417delT	p.N1139fs	.	.	180	12	223	0	.	637
RAPGEF3	10411	hgsc.bcm.edu	37	12	48134787	48134787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF3	NM_001098531	exon20	c.T1960C	p.S654P	.	.	198	6	192	0	.	660
RAPGEF6	51735	hgsc.bcm.edu	37	5	130769319	130769319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF6	NM_001164387	exon27	c.A3817G	p.N1273D	.	.	96	4	79	0	.	661
RAPGEF6	51735	bcgsc.ca	37	5	130764597	130764597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF6	NM_001164386	exon28	c.A4802G	p.D1601G	.	.	212	6	149	0	.	661
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu	37	2	204305064	204305064	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPH1	NM_213589	exon14	c.2849delC	p.P950fs	.	.	154	10	99	0	.	1151
RARS2	57038	hgsc.bcm.edu;broad.mit.edu	37	6	88279277	88279277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RARS2	NM_020320	exon2	c.68delA	p.N23fs	.	.	163	10	140	0	.	92
RARS	5917	hgsc.bcm.edu;broad.mit.edu	37	5	167937675	167937675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RARS	NM_002887	exon12	c.1436delA	p.E479fs	.	.	150	10	144	0	.	93
RASA4CP	401331	broad.mit.edu	37	7	44068881	44068881	+	RNA	SNP	A	A	G	rs2595662	bycluster;by2hit2allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	66	7	47	0	.	.
RASGRF2	5924	hgsc.bcm.edu	37	5	80475996	80475996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RASGRF2	NM_006909	exon18	c.T2689C	p.F897L	.	.	90	4	89	0	.	725
RASSF2	9770	hgsc.bcm.edu	37	20	4776514	4776514	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RASSF2	NM_014737	exon5	c.A234G	p.R78R	.	.	121	5	73	0	.	481
RBBP6	5930	hgsc.bcm.edu	37	16	24583715	24583715	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RBBP6	NM_006910	exon18	c.A5328G	p.K1776K	.	.	30	7	31	0	.	230
RBFOX1	54715	hgsc.bcm.edu;broad.mit.edu	37	16	7680656	7680656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RBFOX1	NM_145891	exon8	c.788delC	p.A263fs	.	.	213	15	154	0	.	92
RBM20	282996	broad.mit.edu;bcgsc.ca	37	10	112572562	112572562	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001134363	exon9	c.2407delA	p.K803fs	.	.	73	7	79	0	.	.
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	114424452	114424452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001145346	exon1	c.C448T	p.R150C	.	.	10	8	14	0	.	.
RCCD1	91433	hgsc.bcm.edu;broad.mit.edu	37	15	91500927	91500927	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RCCD1	NM_001017919	exon4	c.651delG	p.A217fs	.	.	229	16	153	0	.	90
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu	37	11	63679557	63679557	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RCOR2	NM_173587	exon12	c.1352delC	p.P451fs	.	.	153	10	143	0	.	92
RCOR2	283248	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	63681765	63681765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RCOR2	NM_173587	exon7	c.G643A	p.G215R	.	.	226	65	121	0	.	92
REL	5966	hgsc.bcm.edu;broad.mit.edu	37	2	61147771	61147771	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	REL	NM_002908	exon10	c.1081delA	p.K361fs	.	.	213	13	154	0	.	1272
RERE	473	broad.mit.edu;bcgsc.ca	37	1	8420775	8420775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RERE	NM_001042681	exon18	c.2792delC	p.P931fs	.	.	69	8	122	0	.	515
REST	5978	hgsc.bcm.edu;broad.mit.edu	37	4	57798156	57798156	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	REST	NM_001193508	exon4	c.3132delA	p.R1044fs	.	.	170	10	146	0	.	232
RFC4	5984	hgsc.bcm.edu;ucsc.edu	37	3	186507957	186507957	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RFC4	NM_181573	exon10	c.A970T	p.K324X	.	.	162	61	148	0	.	291
RFPL2	10739	hgsc.bcm.edu;broad.mit.edu	37	22	32589205	32589205	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RFPL2	NM_006605	exon1	c.57delT	p.F19fs	.	.	268	16	204	0	.	91
RGL3	57139	hgsc.bcm.edu;broad.mit.edu	37	19	11526663	11526663	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGL3	NM_001035223	exon5	c.587delT	p.L196fs	.	.	157	11	118	0	.	227
RGPD5	84220	hgsc.bcm.edu	37	2	111292773	111292773	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGPD5	NM_005054	exon20	c.3190delG	p.V1064X	.	.	132	10	102	0	.	22
RGS11	8786	hgsc.bcm.edu;broad.mit.edu	37	16	323531	323531	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGS11	NM_183337	exon8	c.532delG	p.D178fs	.	.	201	13	201	0	.	227
RGS17	26575	hgsc.bcm.edu;broad.mit.edu	37	6	153365128	153365128	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGS17	NM_012419	exon2	c.26delA	p.N9fs	.	.	164	10	116	0	.	227
RGS3	5998	hgsc.bcm.edu	37	9	116359110	116359110	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGS3	NM_144488	exon26	c.C3474T	p.G1158G	.	.	144	4	111	0	.	227
RGS6	9628	hgsc.bcm.edu;broad.mit.edu	37	14	72985093	72985093	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGS6	NM_001204424	exon15	c.1126delC	p.P376fs	.	.	173	14	111	0	.	227
RHO	6010	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129251109	129251109	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RHO	NM_000539	exon3	c.C546T	p.G182G	.	.	203	92	172	0	.	90
RHOXF1	158800	bcgsc.ca	37	X	119249423	119249423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RHOXF1	NM_139282	exon1	c.A350G	p.E117G	.	.	48	5	38	1	.	130
RIBC2	26150	hgsc.bcm.edu	37	22	45810285	45810285	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIBC2	NM_015653	exon2	c.195+2T>G	.	.	.	96	5	94	0	.	90
RIN1	9610	hgsc.bcm.edu	37	11	66101126	66101126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIN1	NM_004292	exon8	c.A1595G	p.E532G	.	.	221	7	172	0	.	710
RIN3	79890	hgsc.bcm.edu	37	14	93022212	93022212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIN3	NM_024832	exon2	c.A161G	p.E54G	.	.	88	2	81	0	.	522
RINL	126432	hgsc.bcm.edu;broad.mit.edu	37	19	39359906	39359906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RINL	NM_001195833	exon11	c.1619delA	p.K540fs	.	.	156	10	158	0	.	91
RIPK1	8737	hgsc.bcm.edu;broad.mit.edu	37	6	3077159	3077159	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIPK1	NM_003804	exon1	c.102delT	p.C34fs	.	.	182	11	130	0	.	1044
RIPK3	11035	hgsc.bcm.edu	37	14	24807655	24807655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIPK3	NM_006871	exon4	c.A590G	p.K197R	.	.	72	4	47	0	.	946
RIT2	6014	hgsc.bcm.edu;broad.mit.edu	37	18	40323632	40323632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIT2	NM_002930	exon5	c.480delT	p.F160fs	.	.	117	10	102	0	.	1084
RLTPR	146206	hgsc.bcm.edu;broad.mit.edu	37	16	67688777	67688777	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RLTPR	NM_001013838	exon32	c.3679delG	p.G1227fs	.	.	143	13	123	0	.	67
RMND5A	64795	hgsc.bcm.edu;broad.mit.edu	37	2	86992185	86992185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RMND5A	NM_022780	exon5	c.557delA	p.Q186fs	.	.	219	13	176	0	.	92
RNF144A	9781	hgsc.bcm.edu;broad.mit.edu	37	2	7137130	7137130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF144A	NM_014746	exon3	c.73delG	p.G25fs	.	.	188	12	145	0	.	227
RNF145	153830	hgsc.bcm.edu;broad.mit.edu	37	5	158585835	158585835	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF145	NM_001199380	exon11	c.1925delC	p.P642fs	.	.	210	15	169	0	.	525
RNF213	57674	hgsc.bcm.edu	37	17	78261894	78261894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF213	NM_001256071	exon4	c.A542G	p.E181G	.	.	104	4	69	0	.	577
RNF44	22838	hgsc.bcm.edu;broad.mit.edu	37	5	175956599	175956599	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF44	NM_014901	exon9	c.1061delG	p.G354fs	.	.	181	11	166	0	.	658
RNF8	9025	bcgsc.ca	37	6	37322042	37322042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF8	NM_003958	exon1	c.102delT	p.D34fs	.	.	28	3	67	0	.	227
RNF8	9025	hgsc.bcm.edu;bcgsc.ca	37	6	37344709	37344709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF8	NM_003958	exon6	c.A1136G	p.K379R	.	.	90	5	63	0	.	227
RNPS1	10921	hgsc.bcm.edu;broad.mit.edu	37	16	2314622	2314622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNPS1	NM_006711	exon2	c.23delA	p.K8fs	.	.	129	11	92	0	.	91
RNR2	6053	broad.mit.edu	37	MT	2690	2690	+	RNA	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	55	50	158	0	.	.
ROS1	6098	hgsc.bcm.edu;broad.mit.edu	37	6	117683915	117683915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ROS1	NM_002944	exon21	c.3232delG	p.V1078fs	.	.	166	10	132	0	.	1353
RP1	6101	bcgsc.ca	37	8	55537477	55537477	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RP1	NM_006269	exon4	c.A1035G	p.E345E	.	.	72	4	73	0	.	102
RPAP1	26015	hgsc.bcm.edu;bcgsc.ca	37	15	41826958	41826958	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPAP1	NM_015540	exon6	c.T717C	p.A239A	.	.	122	5	98	0	.	153
RPE65	6121	hgsc.bcm.edu	37	1	68896995	68896995	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPE65	NM_000329	exon12	c.A1308G	p.G436G	.	.	93	2	113	0	.	91
RPF1	80135	hgsc.bcm.edu;broad.mit.edu	37	1	84945079	84945079	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPF1	NM_025065	exon1	c.115delG	p.G39fs	.	.	155	10	139	0	.	90
RPGR	6103	hgsc.bcm.edu;broad.mit.edu	37	X	38146456	38146456	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPGR	NM_001034853	exon15	c.1796delA	p.N599fs	.	.	182	11	118	0	.	131
RPRD1B	58490	hgsc.bcm.edu;broad.mit.edu	37	20	36676769	36676769	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPRD1B	NM_021215	exon3	c.301delA	p.K101fs	.	.	155	12	157	0	.	91
RPRD2	23248	bcgsc.ca	37	1	150390184	150390184	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPRD2	NM_015203	exon2	c.A318G	p.E106E	.	.	313	8	123	0	.	23
RPS6KB2	6199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67200629	67200629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPS6KB2	NM_003952	exon9	c.A740G	p.N247S	.	.	89	24	60	0	.	1000
RRH	10692	hgsc.bcm.edu;broad.mit.edu	37	4	110754368	110754368	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RRH	NM_006583	exon2	c.180delA	p.T60fs	.	.	154	10	191	0	.	91
RRM1	6240	hgsc.bcm.edu	37	11	4127278	4127278	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RRM1	NM_001033	exon3	c.T111C	p.A37A	.	.	84	3	68	0	.	227
RTTN	25914	hgsc.bcm.edu;broad.mit.edu	37	18	67801730	67801730	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RTTN	NM_173630	exon23	c.2933delT	p.L978fs	.	.	143	10	119	0	.	141
RUFY2	55680	hgsc.bcm.edu;broad.mit.edu	37	10	70139221	70139221	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RUFY2	NM_017987	exon12	c.1270delA	p.T424fs	.	.	154	11	126	0	.	91
RUFY4	285180	hgsc.bcm.edu;broad.mit.edu	37	2	218938584	218938584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RUFY4	NM_198483	exon8	c.576delA	p.R192fs	.	.	155	11	131	0	.	46
RUSC2	9853	hgsc.bcm.edu	37	9	35560357	35560357	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RUSC2	NM_014806	exon10	c.G3720A	p.E1240E	.	.	61	5	51	0	.	91
RXFP1	59350	bcgsc.ca	37	4	159568331	159568331	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RXFP1	NM_001253727	exon16	c.T1815C	p.I605I	.	.	47	4	49	1	.	91
RXRB	6257	hgsc.bcm.edu;broad.mit.edu	37	6	33166144	33166144	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RXRB	NM_021976	exon3	c.581delC	p.P194fs	.	.	139	11	102	0	.	189
RYR1	6261	hgsc.bcm.edu;broad.mit.edu	37	19	39025415	39025415	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RYR1	NM_000540	exon79	c.11315delG	p.R3772fs	.	.	195	12	132	0	.	100
RYR3	6263	hgsc.bcm.edu	37	15	34018695	34018695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RYR3	NM_001243996	exon46	c.T7021C	p.S2341P	.	.	108	6	79	0	.	520
SACS	26278	hgsc.bcm.edu	37	13	23907453	23907453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SACS	NM_014363	exon10	c.T10562C	p.L3521P	.	.	87	2	125	0	.	298
SAMD15	161394	bcgsc.ca	37	14	77844870	77844870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SAMD15	NM_001010860	exon1	c.A1109G	p.K370R	.	.	84	5	95	0	.	90
SAMD4A	23034	hgsc.bcm.edu;broad.mit.edu	37	14	55231225	55231225	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SAMD4A	NM_015589	exon7	c.1563delT	p.Y521fs	.	.	123	10	83	0	.	90
SARDH	1757	hgsc.bcm.edu;broad.mit.edu	37	9	136559454	136559454	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SARDH	NM_007101	exon15	c.1847delG	p.G616fs	.	.	274	17	227	0	.	90
SASS6	163786	hgsc.bcm.edu;broad.mit.edu	37	1	100584676	100584676	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SASS6	NM_194292	exon7	c.567delA	p.K189fs	.	.	139	10	102	0	.	70
SATB1	6304	bcgsc.ca	37	3	18427925	18427925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SATB1	NM_002971	exon8	c.C1385A	p.P462H	.	.	165	6	135	0	.	228
SBF1	6305	bcgsc.ca	37	22	50900994	50900994	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SBF1	NM_002972	exon18	c.2121delC	p.P707fs	.	.	42	4	78	0	.	90
SCAF11	9169	hgsc.bcm.edu;broad.mit.edu	37	12	46328022	46328022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCAF11	NM_004719	exon8	c.569delT	p.F190fs	.	.	172	11	120	0	.	93
SCAF1	58506	hgsc.bcm.edu	37	19	50148321	50148321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCAF1	NM_021228	exon2	c.A38G	p.E13G	.	.	85	3	60	0	.	68
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu	37	19	50156035	50156035	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCAF1	NM_021228	exon7	c.2389delC	p.P797fs	.	.	163	13	113	0	.	68
SCEL	8796	bcgsc.ca	37	13	78184240	78184240	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCEL	NM_144777	exon22	c.1336delG	p.G446fs	.	.	51	5	82	0	.	95
SCG2	7857	hgsc.bcm.edu;broad.mit.edu	37	2	224462280	224462280	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCG2	NM_003469	exon2	c.1721delC	p.P574fs	.	.	249	15	188	0	.	69
SCG5	6447	hgsc.bcm.edu;broad.mit.edu	37	15	32936003	32936003	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_003020	exon2	c.210delC	p.G70fs	.	.	154	11	142	0	.	.
SCIN	85477	broad.mit.edu;bcgsc.ca	37	7	12620790	12620790	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCIN	NM_001112706	exon3	c.460delC	p.P154fs	.	.	88	9	84	0	.	24
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu	37	3	38739704	38739704	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN10A	NM_006514	exon27	c.5007delC	p.P1669fs	.	.	186	13	162	0	.	99
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu	37	3	38793887	38793887	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN10A	NM_006514	exon11	c.1578delT	p.F526fs	.	.	154	10	122	0	.	99
SCN1A	6323	hgsc.bcm.edu;bcgsc.ca	37	2	166866301	166866301	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN1A	NM_001165963	exon20	c.A3930G	p.G1310G	.	.	98	4	61	0	.	147
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu	37	2	166903448	166903448	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN1A	NM_001165964	exon9	c.1209delT	p.F403fs	.	.	184	13	135	0	.	147
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu	37	2	167313428	167313428	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN7A	NM_002976	exon10	c.1242delA	p.K414fs	.	.	194	12	170	0	.	67
SCYL3	57147	hgsc.bcm.edu	37	1	169839479	169839479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCYL3	NM_020423	exon6	c.T542C	p.L181P	.	.	122	4	64	0	.	361
SDCCAG3	10807	hgsc.bcm.edu;broad.mit.edu	37	9	139303504	139303504	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SDCCAG3	NM_001039707	exon3	c.236delA	p.K79fs	.	.	153	10	128	0	.	90
SEBOX	645832	hgsc.bcm.edu	37	17	26692227	26692227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001080837	exon1	c.G25C	p.A9P	.	.	69	5	67	0	.	.
SEC14L1	6397	hgsc.bcm.edu;broad.mit.edu	37	17	75192380	75192380	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC14L1	NM_001204408	exon10	c.806delC	p.T269fs	.	.	181	11	101	0	.	92
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu	37	22	30887947	30887947	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC14L4	NM_001161368	exon10	c.785delG	p.G262fs	.	.	159	10	121	0	.	91
SEC16B	89866	hgsc.bcm.edu;broad.mit.edu	37	1	177901668	177901668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC16B	NM_033127	exon24	c.2969delG	p.G990fs	.	.	215	13	118	0	.	93
SEC31A	22872	hgsc.bcm.edu;broad.mit.edu	37	4	83763594	83763594	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC31A	NM_001077207	exon22	c.2667delG	p.G889fs	.	.	153	12	130	0	.	268
SEC63	11231	bcgsc.ca	37	6	108233930	108233930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC63	NM_007214	exon6	c.A563T	p.N188I	.	.	225	9	171	0	.	227
SELENBP1	8991	hgsc.bcm.edu;broad.mit.edu	37	1	151341939	151341939	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SELENBP1	NM_001258289	exon3	c.279delC	p.P93fs	.	.	215	13	102	0	.	90
SEMA3C	10512	bcgsc.ca	37	7	80374439	80374439	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEMA3C	NM_006379	exon18	c.C2027G	p.P676R	.	.	429	9	191	0	.	515
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu	37	3	122680077	122680077	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEMA5B	NM_001256347	exon2	c.196delC	p.H66fs	.	.	204	14	151	0	.	157
SEMA6A	57556	hgsc.bcm.edu;bcgsc.ca	37	5	115824677	115824677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEMA6A	NM_020796	exon8	c.A562G	p.T188A	.	.	111	5	89	0	.	92
SENP3	26168	hgsc.bcm.edu	37	17	7470288	7470288	+	Missense_Mutation	SNP	A	A	G	rs76586164		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SENP3	NM_015670	exon8	c.A1307G	p.K436R	.	.	103	5	154	0	A|0.500;G|0.500	659
SENP5	205564	hgsc.bcm.edu;broad.mit.edu	37	3	196626588	196626588	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SENP5	NM_152699	exon3	c.1565delA	p.E522fs	.	.	175	11	193	0	.	659
SENP7	57337	hgsc.bcm.edu;broad.mit.edu	37	3	101090875	101090875	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SENP7	NM_020654	exon7	c.773delT	p.L258X	.	.	167	10	109	0	.	661
SEPT2	4735	hgsc.bcm.edu;broad.mit.edu	37	2	242275390	242275390	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEPT2	NM_001008491	exon6	c.218delA	p.E73fs	.	.	155	14	86	0	.	68
SEPT8	23176	hgsc.bcm.edu	37	5	132096620	132096620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEPT8	NM_015146	exon9	c.A1160G	p.K387R	.	.	79	4	73	0	.	70
SERPINA9	327657	hgsc.bcm.edu;broad.mit.edu	37	14	94933604	94933604	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SERPINA9	NM_175739	exon3	c.798delT	p.F266fs	.	.	166	13	115	0	.	226
SERPINC1	462	hgsc.bcm.edu	37	1	173876589	173876589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SERPINC1	NM_000488	exon6	c.A1217G	p.E406G	.	.	184	6	122	0	.	227
SERPINF1	5176	hgsc.bcm.edu;broad.mit.edu	37	17	1680585	1680585	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SERPINF1	NM_002615	exon8	c.1102delG	p.G368fs	.	.	167	10	243	0	.	227
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu	37	16	30990582	30990582	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SETD1A	NM_014712	exon14	c.3475delC	p.P1159fs	.	.	247	18	215	0	.	93
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47168143	47168143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SETD2	NM_014159	exon2	c.A82G	p.N28D	.	.	36	4	33	0	.	1273
SETX	23064	hgsc.bcm.edu;broad.mit.edu	37	9	135173586	135173586	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SETX	NM_015046	exon13	c.5662delA	p.R1888fs	.	.	174	11	155	0	.	93
SF1	7536	hgsc.bcm.edu;broad.mit.edu	37	11	64540917	64540917	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SF1	NM_001178030	exon3	c.596delC	p.P199fs	.	.	167	10	93	0	.	227
SF3A3	10946	hgsc.bcm.edu;broad.mit.edu	37	1	38442595	38442595	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SF3A3	NM_006802	exon12	c.966delT	p.F322fs	.	.	212	14	172	0	.	90
SF3B1	23451	bcgsc.ca	37	2	198265527	198265527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SF3B1	NM_012433	exon18	c.G2630C	p.G877A	.	.	151	8	122	0	.	140
SFXN2	118980	hgsc.bcm.edu;broad.mit.edu	37	10	104486829	104486829	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SFXN2	NM_178858	exon3	c.247delG	p.G83fs	.	.	163	11	212	0	.	90
SFXN4	119559	bcgsc.ca	37	10	120925089	120925089	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SFXN4	NM_213649	exon1	c.71delT	p.F24fs	.	.	37	4	76	0	.	91
SGK1	6446	bcgsc.ca	37	6	134493370	134493370	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SGK1	NM_001143676	exon10	c.A1032G	p.E344E	.	.	219	7	174	0	.	981
SH2D2A	9047	hgsc.bcm.edu;broad.mit.edu	37	1	156786488	156786488	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH2D2A	NM_003975	exon1	c.13delC	p.L5fs	.	.	161	10	86	0	.	90
SH3RF2	153769	hgsc.bcm.edu;broad.mit.edu	37	5	145393369	145393369	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH3RF2	NM_152550	exon5	c.804delA	p.T268fs	.	.	170	11	143	0	.	92
SH3TC1	54436	hgsc.bcm.edu	37	4	8230126	8230126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH3TC1	NM_018986	exon12	c.A2705G	p.Q902R	.	.	75	3	86	0	.	154
SH3TC1	54436	hgsc.bcm.edu;bcgsc.ca	37	4	8230236	8230236	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH3TC1	NM_018986	exon12	c.G2815C	p.G939R	.	.	141	6	164	0	.	154
SHOC2	8036	bcgsc.ca	37	10	112760207	112760207	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SHOC2	NM_007373	exon4	c.876delA	p.R292fs	.	.	37	4	68	0	.	524
SHOC2	8036	hgsc.bcm.edu	37	10	112769581	112769581	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SHOC2	NM_007373	exon8	c.A1533G	p.E511E	.	.	97	4	127	0	.	524
SHOX2	6474	hgsc.bcm.edu;broad.mit.edu	37	3	157820545	157820545	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SHOX2	NM_003030	exon3	c.549delT	p.F183fs	.	.	230	14	212	0	.	90
SHROOM2	357	hgsc.bcm.edu	37	X	9900715	9900715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SHROOM2	NM_001649	exon6	c.T3392C	p.V1131A	.	.	90	3	70	0	.	198
SI	6476	hgsc.bcm.edu	37	3	164735840	164735840	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SI	NM_001041	exon29	c.C3438T	p.S1146S	.	.	99	4	76	0	.	104
SIL1	64374	hgsc.bcm.edu;broad.mit.edu	37	5	138286953	138286953	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SIL1	NM_001037633	exon10	c.936delG	p.G312fs	.	.	183	11	145	0	.	90
SIRPD	128646	bcgsc.ca	37	20	1532596	1532596	+	Silent	SNP	G	G	C	rs144302855	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SIRPD	NM_178460	exon2	c.C162G	p.P54P	.	.	182	6	111	0	G|1.000;A|0.000	227
SIRPG	55423	bcgsc.ca	37	20	1616207	1616207	+	Missense_Mutation	SNP	C	C	G	rs200055053	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SIRPG	NM_018556	exon4	c.G787C	p.V263L	.	.	377	11	333	1	.	23
SKAP2	8935	hgsc.bcm.edu	37	7	26765146	26765146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SKAP2	NM_003930	exon9	c.A697G	p.R233G	.	.	91	3	68	0	.	91
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_207371	exon4	c.G1266A	p.E422E	.	.	86	8	74	0	.	.
SKIV2L	6499	hgsc.bcm.edu	37	6	31929439	31929439	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SKIV2L	NM_006929	exon9	c.A905T	p.Q302L	.	.	117	36	58	0	.	290
SLC11A2	4891	hgsc.bcm.edu;broad.mit.edu	37	12	51386667	51386667	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC11A2	NM_001174125	exon12	c.1210delT	p.W404fs	.	.	152	10	110	0	.	153
SLC12A2	6558	hgsc.bcm.edu;broad.mit.edu	37	5	127514330	127514330	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC12A2	NM_001046	exon22	c.3049delA	p.K1017fs	.	.	214	13	159	0	.	94
SLC12A4	6560	hgsc.bcm.edu	37	16	67985797	67985797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC12A4	NM_001145962	exon7	c.A1067G	p.D356G	.	.	167	5	136	0	.	91
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu	37	18	43329808	43329808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC14A1	NM_001146037	exon9	c.1230delA	p.T410fs	.	.	249	15	201	0	.	515
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu	37	17	73094135	73094135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC16A5	NM_001271765	exon4	c.202delC	p.P68fs	.	.	228	15	150	0	.	90
SLC16A7	9194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	60098572	60098572	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC16A7	.	.	.	.	.	.	93	38	100	0	.	91
SLC18A2	6571	hgsc.bcm.edu	37	10	119026263	119026263	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC18A2	NM_003054	exon11	c.T1011C	p.A337A	.	.	85	4	139	0	.	90
SLC25A13	10165	hgsc.bcm.edu;broad.mit.edu	37	7	95906607	95906607	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC25A13	NM_001160210	exon3	c.113delA	p.N38fs	.	.	151	10	78	0	.	515
SLC25A28	81894	bcgsc.ca	37	10	101373620	101373620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC25A28	NM_031212	exon2	c.T353C	p.L118P	.	.	63	4	73	0	.	90
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu	37	15	85431063	85431063	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC28A1	NM_201651	exon3	c.72delG	p.M24fs	.	.	192	12	162	0	.	93
SLC30A6	55676	hgsc.bcm.edu	37	2	32417462	32417462	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC30A6	NM_001193513	exon7	c.A462G	p.G154G	.	.	93	2	95	0	.	90
SLC34A3	142680	broad.mit.edu;bcgsc.ca	37	9	140130620	140130620	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC34A3	NM_001177317	exon13	c.1552delG	p.G518fs	.	.	86	9	85	0	.	90
SLC35D2	11046	hgsc.bcm.edu;broad.mit.edu	37	9	99099002	99099002	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC35D2	NM_007001	exon9	c.749delT	p.L250fs	.	.	151	10	117	0	.	90
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu	37	6	137243900	137243900	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC35D3	NM_001008783	exon1	c.334delC	p.P112fs	.	.	220	19	254	0	.	91
SLC38A10	124565	hgsc.bcm.edu	37	17	79219505	79219505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC38A10	NM_001037984	exon16	c.A3211G	p.I1071V	.	.	300	12	253	0	.	70
SLC38A9	153129	hgsc.bcm.edu	37	5	54952575	54952575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC38A9	NM_173514	exon9	c.A725G	p.D242G	.	.	88	3	87	0	.	68
SLC39A14	23516	hgsc.bcm.edu	37	8	22273673	22273673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC39A14	NM_001135153	exon7	c.A1027G	p.S343G	.	.	143	5	174	0	.	90
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu	37	2	44502687	44502687	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC3A1	NM_000341	exon1	c.13delA	p.K5fs	.	.	248	15	169	0	.	90
SLC43A1	8501	hgsc.bcm.edu;broad.mit.edu	37	11	57259093	57259093	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC43A1	NM_001198810	exon10	c.1025delA	p.N342fs	.	.	161	10	131	0	.	90
SLC44A3	126969	hgsc.bcm.edu;broad.mit.edu	37	1	95356749	95356749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC44A3	NM_001114106	exon13	c.1546delA	p.K516fs	.	.	190	12	150	0	.	91
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu	37	4	72363374	72363374	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC4A4	NM_001098484	exon16	c.2131delA	p.K711fs	.	.	133	11	102	0	.	95
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu	37	12	85279291	85279291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC6A15	NM_018057	exon4	c.497delT	p.L166fs	.	.	157	10	146	0	.	93
SLC6A7	6534	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	149583547	149583547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC6A7	NM_014228	exon10	c.C1278A	p.F426L	.	.	236	71	205	0	.	90
SLC9A1	6548	hgsc.bcm.edu	37	1	27428223	27428223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC9A1	NM_003047	exon10	c.A2030G	p.E677G	.	.	120	4	73	0	.	91
SLC9B1	150159	hgsc.bcm.edu	37	4	103911043	103911043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001100874	exon3	c.A125G	p.D42G	.	.	92	3	91	0	.	.
SLCO1B1	10599	hgsc.bcm.edu;broad.mit.edu	37	12	21355564	21355564	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLCO1B1	NM_006446	exon10	c.1275delT	p.Y425fs	.	.	146	10	109	0	.	97
SLFN12L	100506736	hgsc.bcm.edu;broad.mit.edu	37	17	33806378	33806378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLFN12L	NM_001195790	exon2	c.851delA	p.N284fs	.	.	190	12	123	0	.	23
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu	37	3	57902753	57902753	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLMAP	NM_007159	exon19	c.2157delA	p.L719fs	.	.	249	15	220	0	.	90
SMARCA1	6594	hgsc.bcm.edu;broad.mit.edu	37	X	128649751	128649751	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCA1	NM_139035	exon5	c.543delG	p.G181fs	.	.	213	13	156	0	.	230
SMARCA2	6595	bcgsc.ca	37	9	2097407	2097407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCA2	NM_139045	exon21	c.T3014C	p.L1005P	.	.	52	4	57	0	.	653
SMARCA4	6597	hgsc.bcm.edu	37	19	11099991	11099991	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCA4	NM_003072	exon7	c.1119-2A>G	.	.	.	123	3	103	0	.	1523
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	144442631	144442631	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCA5	NM_003601	exon3	c.302delT	p.L101fs	.	.	106	12	125	0	.	227
SMARCAD1	56916	hgsc.bcm.edu	37	4	95210664	95210664	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCAD1	NM_001128429	exon24	c.3066delA	p.L1022fs	.	.	143	11	234	0	.	229
SMARCAL1	50485	hgsc.bcm.edu	37	2	217329366	217329366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCAL1	NM_014140	exon13	c.C2117T	p.A706V	.	.	91	4	70	0	.	293
SMC1B	27127	hgsc.bcm.edu;broad.mit.edu	37	22	45789663	45789663	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMC1B	NM_148674	exon9	c.1396delA	p.T466fs	.	.	189	14	122	0	.	229
SMC3	9126	broad.mit.edu;bcgsc.ca	37	10	112362668	112362668	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMC3	NM_005445	exon27	c.3383delT	p.I1128fs	.	.	87	8	146	0	.	92
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu	37	2	55791450	55791450	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMEK2	NM_001122964	exon15	c.2259delA	p.K753fs	.	.	179	11	128	0	.	228
SMG1	23049	hgsc.bcm.edu;broad.mit.edu	37	16	18865999	18865999	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMG1	NM_015092	exon30	c.4462delA	p.T1488fs	.	.	196	13	158	0	.	1160
SMPD1	6609	hgsc.bcm.edu	37	11	6411941	6411941	+	Missense_Mutation	SNP	C	C	T	rs78250081		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMPD1	NM_000543	exon1	c.C113T	p.A38V	.	.	27	5	17	0	.	90
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu	37	2	130910956	130910956	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMPD4	NM_017951	exon18	c.2078delA	p.K693fs	.	.	194	12	158	0	.	90
SMYD5	10322	hgsc.bcm.edu	37	2	73452036	73452036	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMYD5	NM_006062	exon11	c.983delA	p.E328fs	.	.	133	11	131	0	.	226
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu	37	6	84368767	84368767	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNAP91	NM_001242794	exon6	c.497delA	p.K166fs	.	.	129	10	118	0	.	23
SNAPC4	6621	bcgsc.ca	37	9	139272490	139272490	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNAPC4	NM_003086	exon21	c.3789delG	p.G1263fs	.	.	48	6	63	0	.	90
SNAPC4	6621	bcgsc.ca	37	9	139272555	139272555	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNAPC4	NM_003086	exon21	c.3724delC	p.L1242fs	.	.	58	6	71	0	.	90
SNORD12B	100113393	hgsc.bcm.edu;broad.mit.edu	37	20	47896879	47896879	+	RNA	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	215	13	216	0	.	.
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu	37	8	121823695	121823695	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNTB1	NM_021021	exon1	c.389delG	p.G130fs	.	.	246	15	167	0	.	228
SNTB2	6645	hgsc.bcm.edu;broad.mit.edu	37	16	69333538	69333538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNTB2	NM_006750	exon6	c.1391delA	p.E464fs	.	.	153	14	110	0	.	90
SNX24	28966	hgsc.bcm.edu;broad.mit.edu	37	5	122272475	122272475	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNX24	NM_014035	exon2	c.107delA	p.E36fs	.	.	182	13	142	0	.	226
SOHLH1	402381	hgsc.bcm.edu	37	9	138586277	138586277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SOHLH1	NM_001012415	exon7	c.A902G	p.D301G	.	.	69	4	40	0	.	135
SP100	6672	hgsc.bcm.edu;broad.mit.edu	37	2	231339124	231339124	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SP100	NM_001080391	exon17	c.1562delA	p.E521fs	.	.	230	18	166	0	.	94
SP2	6668	hgsc.bcm.edu;broad.mit.edu	37	17	45994350	45994350	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SP2	NM_003110	exon3	c.913delC	p.P305fs	.	.	174	10	125	0	.	90
SPATA13	221178	bcgsc.ca	37	13	24797404	24797404	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATA13	NM_001166271	exon2	c.337delT	p.S113fs	.	.	28	3	66	0	.	229
SPATA22	84690	hgsc.bcm.edu;broad.mit.edu	37	17	3352342	3352342	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATA22	NM_032598	exon6	c.431delA	p.N144fs	.	.	140	11	159	0	.	90
SPATA31A1	647060	hgsc.bcm.edu	37	9	39890582	39890582	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001085452	exon4	c.3569delA	p.Q1190fs	.	.	189	14	159	0	.	.
SPATA31A3	727830	broad.mit.edu;bcgsc.ca	37	9	40702747	40702747	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001083124	exon4	c.404delC	p.S135fs	.	.	753	31	571	0	.	.
SPATA5L1	79029	hgsc.bcm.edu	37	15	45707941	45707941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATA5L1	NM_024063	exon5	c.A1801G	p.T601A	.	.	79	4	64	0	.	94
SPATA6L	55064	bcgsc.ca	37	9	4618015	4618015	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001039395	exon8	c.A729G	p.Q243Q	.	.	129	5	136	0	.	.
SPATA7	55812	hgsc.bcm.edu;broad.mit.edu	37	14	88883150	88883150	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATA7	NM_018418	exon5	c.334delA	p.K112fs	.	.	163	10	176	0	.	91
SPATS2	65244	hgsc.bcm.edu	37	12	49878388	49878388	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATS2	NM_023071	exon4	c.41delT	p.I14fs	.	.	165	14	151	0	.	135
SPECC1L	23384	hgsc.bcm.edu	37	22	24726381	24726381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPECC1L	NM_001145468	exon7	c.A2378G	p.E793G	.	.	82	3	67	0	.	92
SPEM1	374768	hgsc.bcm.edu;broad.mit.edu	37	17	7324238	7324238	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPEM1	NM_199339	exon3	c.244delC	p.P82fs	.	.	120	11	166	0	.	90
SPHK1	8877	hgsc.bcm.edu	37	17	74383312	74383312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPHK1	NM_182965	exon6	c.A1058G	p.H353R	.	.	132	6	62	0	.	1107
SPICE1	152185	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113188037	113188037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPICE1	NM_144718	exon8	c.G660T	p.L220F	.	.	159	54	142	0	.	70
SPINK5	11005	bcgsc.ca	37	5	147481431	147481431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPINK5	NM_001127699	exon15	c.A1390G	p.K464E	.	.	142	7	104	0	.	138
SPINK6	404203	hgsc.bcm.edu;bcgsc.ca	37	5	147593498	147593498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPINK6	NM_205841	exon3	c.C107A	p.P36H	.	.	153	7	145	0	.	91
SPINK6	404203	hgsc.bcm.edu;broad.mit.edu	37	5	147593496	147593496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPINK6	NM_205841	exon3	c.105delC	p.D35fs	.	.	162	10	150	0	.	91
SPON1	10418	bcgsc.ca	37	11	14101493	14101493	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPON1	.	.	.	.	.	.	159	0	168	0	.	1
SPPL3	121665	hgsc.bcm.edu;broad.mit.edu	37	12	121222293	121222293	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_139015	exon4	c.294delT	p.F98fs	.	.	165	12	106	0	.	.
SPRED1	161742	bcgsc.ca	37	15	38643316	38643316	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPRED1	NM_152594	exon7	c.A786G	p.R262R	.	.	145	5	123	0	.	1085
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	179	103	79	0	A|0.000;C|0.697;T|0.303	45
SPTAN1	6709	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	131374459	131374459	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPTAN1	NM_001130438	exon39	c.G4977C	p.L1659L	.	.	198	84	123	0	.	158
SRBD1	55133	hgsc.bcm.edu	37	2	45812867	45812867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SRBD1	NM_018079	exon5	c.T695C	p.I232T	.	.	75	4	58	0	.	90
SREK1IP1	285672	hgsc.bcm.edu;broad.mit.edu	37	5	64050152	64050152	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SREK1IP1	NM_173829	exon2	c.51delA	p.K17fs	.	.	245	17	176	0	.	23
SRPK1	6732	bcgsc.ca	37	6	35888827	35888827	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SRPK1	NM_003137	exon1	c.7delC	p.R3fs	.	.	26	3	70	0	.	359
SRRT	51593	hgsc.bcm.edu;broad.mit.edu	37	7	100485681	100485681	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SRRT	NM_015908	exon18	c.2345delC	p.T782fs	.	.	165	10	137	0	.	92
SSPO	23145	bcgsc.ca	37	7	149506213	149506213	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_198455	exon63	c.9204+1T>C	.	.	.	483	27	378	1	.	.
SSPO	23145	hgsc.bcm.edu	37	7	149476666	149476666	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_198455	exon9	c.1116+2G>C	.	.	.	317	2	241	0	.	.
SSTR3	6753	hgsc.bcm.edu	37	22	37602587	37602587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SSTR3	NM_001051	exon2	c.A1256G	p.X419W	.	.	60	5	58	0	.	522
ST7	7982	hgsc.bcm.edu	37	7	116771958	116771958	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ST7	NM_018412	exon6	c.A585G	p.R195R	.	.	63	4	45	0	.	515
STAT6	6778	hgsc.bcm.edu;broad.mit.edu	37	12	57499025	57499025	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STAT6	NM_001178079	exon9	c.910delG	p.A304fs	.	.	134	10	101	0	.	849
STC2	8614	hgsc.bcm.edu	37	5	172744893	172744893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STC2	NM_003714	exon4	c.A866G	p.E289G	.	.	81	3	80	0	.	93
STEAP1B	256227	hgsc.bcm.edu;broad.mit.edu	37	7	22533027	22533027	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001164460	exon3	c.513delT	p.F171fs	.	.	226	17	178	0	.	.
STK32B	55351	hgsc.bcm.edu;broad.mit.edu	37	4	5053615	5053615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STK32B	NM_018401	exon1	c.25delC	p.P9fs	.	.	168	14	145	0	.	1002
STK3	6788	hgsc.bcm.edu	37	8	99608284	99608284	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STK3	NM_001256312	exon9	c.A882G	p.R294R	.	.	247	6	182	0	.	978
STK3	6788	hgsc.bcm.edu	37	8	99718796	99718796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STK3	NM_001256312	exon8	c.G667A	p.E223K	.	.	110	2	80	0	.	978
STOML1	9399	hgsc.bcm.edu;broad.mit.edu	37	15	74284520	74284520	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STOML1	NM_001256672	exon1	c.45delT	p.F15fs	.	.	155	11	190	0	.	91
STT3B	201595	hgsc.bcm.edu;broad.mit.edu	37	3	31661295	31661295	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STT3B	NM_178862	exon9	c.1300delA	p.K434fs	.	.	160	10	131	0	.	90
STXBP5	134957	hgsc.bcm.edu;bcgsc.ca	37	6	147631274	147631274	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STXBP5	NM_139244	exon10	c.A972G	p.R324R	.	.	70	4	81	0	.	90
SUGP2	10147	hgsc.bcm.edu;broad.mit.edu	37	19	19136181	19136181	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUGP2	NM_014884	exon3	c.976delT	p.S326fs	.	.	162	10	103	0	.	91
SULF1	23213	hgsc.bcm.edu;broad.mit.edu	37	8	70550813	70550813	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SULF1	NM_001128205	exon20	c.2361delT	p.N787fs	.	.	178	11	121	0	.	518
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu	37	19	39955533	39955533	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUPT5H	NM_003169	exon10	c.720delG	p.E240fs	.	.	196	12	142	0	.	94
SUPT7L	9913	hgsc.bcm.edu;broad.mit.edu	37	2	27883855	27883855	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUPT7L	NM_014860	exon3	c.415delT	p.Y139fs	.	.	157	10	175	0	.	92
SUSD4	55061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223402546	223402546	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUSD4	NM_017982	exon6	c.C909A	p.I303I	.	.	234	67	149	0	.	68
SVIL	6840	hgsc.bcm.edu;broad.mit.edu	37	10	29822101	29822101	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SVIL	NM_021738	exon8	c.1195delC	p.Q399fs	.	.	199	13	169	0	.	96
SVOPL	136306	hgsc.bcm.edu	37	7	138312173	138312173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SVOPL	NM_001139456	exon11	c.T1103C	p.L368P	.	.	90	3	59	0	.	68
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64494280	64494280	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYNE2	NM_182914	exon43	c.A6483T	p.L2161L	.	.	145	6	125	0	.	164
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu	37	14	64518666	64518666	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYNE2	NM_182914	exon48	c.8035delT	p.F2679fs	.	.	187	12	156	0	.	164
SYT11	23208	hgsc.bcm.edu;broad.mit.edu	37	1	155851197	155851197	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYT11	NM_152280	exon4	c.1194delG	p.L398fs	.	.	263	17	133	0	.	92
SYT14	255928	hgsc.bcm.edu;broad.mit.edu	37	1	210329212	210329212	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYT14	NM_001146264	exon8	c.1446delA	p.I482fs	.	.	255	16	132	0	.	92
SYT3	84258	hgsc.bcm.edu;broad.mit.edu	37	19	51133356	51133356	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYT3	NM_032298	exon3	c.747delG	p.R249fs	.	.	148	10	110	0	.	155
T	6862	hgsc.bcm.edu	37	6	166579270	166579270	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	T	NM_003181	exon4	c.530delG	p.G177fs	.	.	155	10	194	0	.	516
TAC3	6866	hgsc.bcm.edu;broad.mit.edu	37	12	57406176	57406176	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAC3	NM_013251	exon6	c.353delC	p.P118fs	.	.	147	10	104	0	.	92
TAF5L	27097	bcgsc.ca	37	1	229738237	229738237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAF5L	NM_001025247	exon4	c.C677T	p.P226L	.	.	215	7	112	1	.	91
TAF7L	54457	hgsc.bcm.edu	37	X	100524209	100524209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAF7L	NM_024885	exon13	c.A1361G	p.E454G	.	.	100	4	70	0	.	130
TAF7L	54457	hgsc.bcm.edu	37	X	100531419	100531419	+	Silent	SNP	C	C	T	rs147505183	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAF7L	NM_024885	exon10	c.G1047A	p.E349E	.	.	101	22	58	0	C|0.997;T|0.003	130
TAF7L	54457	hgsc.bcm.edu	37	X	100531437	100531437	+	Silent	SNP	C	C	T	rs148266047	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAF7L	NM_024885	exon10	c.G1029A	p.E343E	.	.	102	23	51	0	C|0.996;T|0.004	130
TAF7L	54457	hgsc.bcm.edu	37	X	100531443	100531443	+	Missense_Mutation	SNP	T	T	A	rs201479972		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAF7L	NM_024885	exon10	c.A1023T	p.E341D	.	.	104	19	58	0	.	130
TAF7L	54457	hgsc.bcm.edu;broad.mit.edu	37	X	100538467	100538467	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAF7L	NM_024885	exon4	c.508delA	p.T170fs	.	.	154	10	120	0	.	130
TAOK3	51347	bcgsc.ca	37	12	118588900	118588900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAOK3	NM_016281	exon21	c.A2599G	p.R867G	.	.	153	5	139	0	.	933
TAS2R13	50838	hgsc.bcm.edu;broad.mit.edu	37	12	11061232	11061232	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAS2R13	NM_023920	exon1	c.666delC	p.P222fs	.	.	219	14	172	0	.	154
TBC1D12	23232	bcgsc.ca	37	10	96269932	96269932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBC1D12	NM_015188	exon8	c.A1685G	p.Q562R	.	.	71	4	95	1	.	68
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu	37	4	38097556	38097556	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBC1D1	NM_001253912	exon16	c.2525delA	p.E842fs	.	.	102	10	88	0	.	91
TBC1D17	79735	hgsc.bcm.edu;broad.mit.edu	37	19	50386052	50386052	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBC1D17	NM_024682	exon8	c.830delG	p.R277fs	.	.	185	11	146	0	.	90
TBC1D23	55773	hgsc.bcm.edu;broad.mit.edu	37	3	100002490	100002490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBC1D23	NM_001199198	exon4	c.311delT	p.L104fs	.	.	140	11	126	0	.	92
TBX3	6926	hgsc.bcm.edu	37	12	115112498	115112498	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBX3	NM_016569	exon7	c.T1242C	p.A414A	.	.	67	4	89	0	.	93
TCEAL6	158931	bcgsc.ca	37	X	101395780	101395780	+	Missense_Mutation	SNP	T	T	G	rs111588852		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TCEAL6	NM_001006938	exon3	c.A524C	p.Q175P	.	.	150	4	63	0	.	91
TCEAL6	158931	hgsc.bcm.edu	37	X	101395774	101395774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TCEAL6	NM_001006938	exon3	c.A530G	p.D177G	.	.	163	11	62	0	.	91
TCEAL6	158931	hgsc.bcm.edu	37	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	.	.	155	10	60	0	.	91
TCF25	22980	hgsc.bcm.edu	37	16	89972662	89972662	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TCF25	NM_014972	exon15	c.G1689A	p.E563E	.	.	92	4	103	0	.	90
TCP10	6953	bcgsc.ca	37	6	167789491	167789491	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TCP10	NM_004610	exon6	c.651delC	p.T217fs	.	.	55	4	111	0	.	89
TDG	6996	hgsc.bcm.edu;broad.mit.edu	37	12	104370720	104370720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TDG	NM_003211	exon2	c.48delT	p.A16fs	.	.	196	12	164	0	.	661
TDP1	55775	hgsc.bcm.edu	37	14	90446955	90446955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TDP1	NM_018319	exon8	c.A863G	p.D288G	.	.	90	4	70	0	.	92
TEK	7010	bcgsc.ca	37	9	27206624	27206624	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEK	NM_000459	exon15	c.2409delA	p.L803fs	.	.	52	6	65	0	.	1584
TEK	7010	hgsc.bcm.edu	37	9	27169566	27169566	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEK	NM_000459	exon4	c.C567T	p.Y189Y	.	.	77	3	94	0	.	1584
TEK	7010	hgsc.bcm.edu;broad.mit.edu	37	9	27157926	27157926	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEK	NM_000459	exon2	c.150delC	p.R50fs	.	.	133	10	186	0	.	1584
TENM4	26011	broad.mit.edu;bcgsc.ca	37	11	78498079	78498079	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001098816	exon16	c.2229delC	p.T743fs	.	.	76	8	71	0	.	.
TEP1	7011	hgsc.bcm.edu;broad.mit.edu	37	14	20846338	20846338	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEP1	NM_007110	exon39	c.5566delG	p.V1856fs	.	.	177	13	154	0	.	95
TESK1	7016	hgsc.bcm.edu;broad.mit.edu	37	9	35607647	35607647	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TESK1	NM_006285	exon6	c.689delG	p.R230fs	.	.	121	11	127	0	.	641
TEX13B	56156	hgsc.bcm.edu;broad.mit.edu	37	X	107224619	107224619	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEX13B	NM_031273	exon3	c.630delC	p.P210fs	.	.	172	11	134	0	.	131
TEX14	56155	bcgsc.ca	37	17	56643110	56643110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEX14	NM_001201457	exon28	c.A4100C	p.N1367T	.	.	150	10	114	0	.	810
TFCP2	7024	hgsc.bcm.edu	37	12	51510142	51510142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TFCP2	NM_001173452	exon4	c.A413G	p.E138G	.	.	200	4	166	0	.	91
TFIP11	24144	hgsc.bcm.edu;broad.mit.edu	37	22	26902743	26902743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TFIP11	NM_001008697	exon6	c.361delA	p.T121fs	.	.	140	10	103	0	.	90
THAP3	90326	hgsc.bcm.edu	37	1	6693019	6693019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	THAP3	NM_001195753	exon6	c.A602C	p.K201T	.	.	163	9	183	0	.	514
TIFAB	497189	hgsc.bcm.edu;broad.mit.edu	37	5	134785335	134785335	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TIFAB	NM_001099221	exon2	c.295delC	p.L99X	.	.	169	11	129	0	.	22
TJAP1	93643	hgsc.bcm.edu	37	6	43473140	43473140	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TJAP1	NM_001146016	exon11	c.A1221G	p.E407E	.	.	80	4	55	0	.	90
TK1	7083	hgsc.bcm.edu;broad.mit.edu	37	17	76170874	76170874	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TK1	NM_003258	exon7	c.671delC	p.P224fs	.	.	175	11	116	0	.	227
TLE3	7090	hgsc.bcm.edu;broad.mit.edu	37	15	70358457	70358457	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TLE3	NM_001105192	exon7	c.473delC	p.P158fs	.	.	228	14	166	0	.	522
TLL2	7093	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98170214	98170214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TLL2	NM_012465	exon9	c.C1066A	p.Q356K	.	.	59	40	102	0	.	93
TM9SF2	9375	hgsc.bcm.edu;broad.mit.edu	37	13	100191778	100191778	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TM9SF2	NM_004800	exon7	c.795delA	p.I265fs	.	.	131	12	152	0	.	91
TMEM108	66000	hgsc.bcm.edu;broad.mit.edu	37	3	133098904	133098904	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM108	NM_023943	exon4	c.349delC	p.P117fs	.	.	183	11	153	0	.	94
TMEM108	66000	hgsc.bcm.edu;broad.mit.edu	37	3	133099911	133099911	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM108	NM_023943	exon4	c.1356delG	p.E452fs	.	.	228	14	212	0	.	94
TMEM130	222865	hgsc.bcm.edu	37	7	98452869	98452869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM130	NM_152913	exon5	c.T797C	p.L266P	.	.	167	5	89	0	.	91
TMEM135	65084	hgsc.bcm.edu;bcgsc.ca	37	11	87020678	87020678	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM135	NM_022918	exon10	c.T900C	p.L300L	.	.	105	5	55	0	.	514
TMEM139	135932	hgsc.bcm.edu;broad.mit.edu	37	7	142983605	142983605	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM139	NM_001242773	exon4	c.334delC	p.P112fs	.	.	163	11	101	0	.	90
TMEM170A	124491	bcgsc.ca	37	16	75498394	75498394	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM170A	NM_145254	exon1	c.105delC	p.P35fs	.	.	48	5	85	0	.	68
TMEM171	134285	hgsc.bcm.edu;broad.mit.edu	37	5	72424240	72424240	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM171	NM_173490	exon3	c.664delC	p.P222fs	.	.	222	15	197	0	.	68
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	138857961	138857961	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM173	NM_198282	exon6	c.653delA	p.N218fs	.	.	153	43	170	0	.	69
TMEM176A	55365	bcgsc.ca	37	7	150501517	150501517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM176A	NM_018487	exon6	c.C623G	p.T208S	.	.	221	7	124	1	.	92
TMEM216	51259	hgsc.bcm.edu	37	11	61165731	61165731	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001173991	exon5	c.432-2C>A	.	.	.	132	2	100	0	.	.
TMEM216	51259	hgsc.bcm.edu	37	11	61165733	61165733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001173991	exon5	c.T432G	p.S144R	.	.	126	9	98	0	.	.
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu	37	9	74327107	74327107	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM2	NM_013390	exon16	c.2661delA	p.K887fs	.	.	197	12	186	0	.	92
TMEM59	9528	hgsc.bcm.edu;broad.mit.edu	37	1	54506473	54506473	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM59	NM_004872	exon6	c.663delT	p.F221fs	.	.	192	13	188	0	.	90
TMEM69	51249	hgsc.bcm.edu;broad.mit.edu	37	1	46158890	46158890	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM69	NM_016486	exon3	c.57delT	p.S19fs	.	.	165	10	136	0	.	91
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu	37	15	42512286	42512286	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM87A	NM_015497	exon16	c.1451delA	p.K484fs	.	.	198	12	141	0	.	91
TMEM87B	84910	hgsc.bcm.edu	37	2	112839016	112839016	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM87B	NM_032824	exon8	c.A759G	p.A253A	.	.	118	3	95	0	.	90
TMPRSS11B	132724	hgsc.bcm.edu	37	4	69100333	69100333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMPRSS11B	NM_182502	exon5	c.C317T	p.A106V	.	.	135	6	112	0	.	91
TMPRSS11D	9407	hgsc.bcm.edu;broad.mit.edu	37	4	68725283	68725283	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMPRSS11D	NM_004262	exon2	c.122delT	p.L41X	.	.	144	10	112	0	.	91
TMPRSS13	84000	bcgsc.ca	37	11	117789342	117789342	+	Missense_Mutation	SNP	T	T	C	rs75037497		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMPRSS13	NM_001206790	exon2	c.A233G	p.Q78R	.	.	190	94	134	0	T|0.500;C|0.500	91
TMPRSS13	84000	bcgsc.ca	37	11	117789345	117789345	+	Missense_Mutation	SNP	G	G	C	rs61900347		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMPRSS13	NM_001206790	exon2	c.C230G	p.A77G	.	.	191	84	139	0	G|0.899;C|0.101	91
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789367	117789367	+	Missense_Mutation	SNP	A	A	G	rs200485169		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMPRSS13	NM_001206790	exon2	c.T208C	p.S70P	.	.	154	10	147	0	.	91
TMTC1	83857	hgsc.bcm.edu	37	12	29904627	29904627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMTC1	NM_001193451	exon5	c.T910C	p.S304P	.	.	103	5	91	0	.	90
TMX3	54495	hgsc.bcm.edu	37	18	66377317	66377317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMX3	NM_019022	exon4	c.A206G	p.E69G	.	.	115	4	83	0	.	91
TNFRSF10D	8793	bcgsc.ca	37	8	23003226	23003226	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNFRSF10D	NM_003840	exon5	c.691delT	p.S231fs	.	.	32	4	66	0	.	651
TNFRSF11B	4982	hgsc.bcm.edu	37	8	119945174	119945174	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNFRSF11B	NM_002546	exon2	c.A396G	p.Q132Q	.	.	90	4	78	0	.	651
TNFRSF14	8764	hgsc.bcm.edu;broad.mit.edu	37	1	2492097	2492097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNFRSF14	NM_003820	exon5	c.495delC	p.C165fs	.	.	155	11	146	0	.	227
TNFSF10	8743	bcgsc.ca	37	3	172224304	172224304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNFSF10	NM_003810	exon5	c.T824C	p.F275S	.	.	239	8	242	0	.	662
TNIP2	79155	hgsc.bcm.edu	37	4	2749657	2749657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNIP2	NM_024309	exon2	c.A292G	p.T98A	.	.	95	3	69	0	.	90
TNN	63923	bcgsc.ca	37	1	175092675	175092675	+	Silent	SNP	G	G	T	rs78387535		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNN	NM_022093	exon12	c.G2790T	p.P930P	.	.	375	8	235	0	G|0.500;T|0.500	138
TNPO2	30000	hgsc.bcm.edu;broad.mit.edu	37	19	12825735	12825735	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNPO2	NM_013433	exon9	c.790delC	p.Q264fs	.	.	150	10	152	0	.	227
TNS3	64759	hgsc.bcm.edu;broad.mit.edu	37	7	47333390	47333390	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNS3	NM_022748	exon25	c.3713delT	p.L1238X	.	.	114	10	92	0	.	94
TNXB	7148	hgsc.bcm.edu;broad.mit.edu	37	6	32062950	32062950	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNXB	NM_019105	exon4	c.2261delG	p.G754fs	.	.	159	10	118	0	.	90
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu	37	17	18217965	18217965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TOP3A	NM_004618	exon1	c.128delA	p.N43fs	.	.	220	15	155	0	.	228
TOP3B	8940	hgsc.bcm.edu;broad.mit.edu	37	22	22318323	22318323	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TOP3B	NM_003935	exon11	c.1176delC	p.P392fs	.	.	140	10	103	0	.	538
TP53	7157	bcgsc.ca	37	17	7577036	7577036	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TP53,NS,carcinoma,+1	TP53	NM_000546	exon8	c.902delC	p.P301fs	.	.	51	6	84	0	.	70225
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577557	7577557	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon7	c.T724A	p.C242S	.	.	129	76	224	0	.	70225
TP53TG5	27296	hgsc.bcm.edu	37	20	44004161	44004161	+	Missense_Mutation	SNP	T	T	G	rs77763569		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TP53TG5	NM_014477	exon4	c.A286C	p.N96H	.	.	63	5	53	0	.	90
TPCN1	53373	hgsc.bcm.edu;broad.mit.edu	37	12	113704017	113704017	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPCN1	NM_001143819	exon5	c.486delC	p.H162fs	.	.	150	10	181	0	.	93
TPP2	7174	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103268804	103268804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPP2	NM_003291	exon4	c.G449T	p.C150F	.	.	73	37	58	0	.	92
TPRN	286262	hgsc.bcm.edu;broad.mit.edu	37	9	140087119	140087119	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPRN	NM_001128228	exon2	c.1750delA	p.S584fs	.	.	164	12	123	0	.	90
TPRX1	284355	hgsc.bcm.edu	37	19	48305562	48305562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPRX1	NM_198479	exon2	c.C706T	p.P236S	.	.	33	7	20	0	.	90
TPRX1	284355	hgsc.bcm.edu	37	19	48305564	48305564	+	Missense_Mutation	SNP	T	T	A	rs200474965		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPRX1	NM_198479	exon2	c.A704T	p.N235I	.	.	34	16	20	0	.	90
TPRX1	284355	hgsc.bcm.edu	37	19	48305864	48305864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPRX1	NM_198479	exon2	c.T404C	p.I135T	.	.	136	6	108	0	.	90
TRABD2A	129293	bcgsc.ca	37	2	85108155	85108155	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001080824	exon1	c.9delC	p.S3fs	.	.	61	6	91	0	.	.
TRABD	80305	hgsc.bcm.edu;broad.mit.edu	37	22	50632890	50632890	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRABD	NM_025204	exon4	c.234delG	p.V78fs	.	.	164	10	187	0	.	90
TRAF5	7188	hgsc.bcm.edu;broad.mit.edu	37	1	211526743	211526743	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRAF5	NM_004619	exon2	c.162delC	p.N54fs	.	.	159	10	82	0	.	661
TRAPPC11	60684	hgsc.bcm.edu;broad.mit.edu	37	4	184596365	184596365	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_021942	exon7	c.709delA	p.K237fs	.	.	132	11	157	0	.	.
TRAPPC8	22878	hgsc.bcm.edu	37	18	29432603	29432603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRAPPC8	NM_014939	exon23	c.A3457G	p.K1153E	.	.	69	4	68	0	.	159
TREH	11181	bcgsc.ca	37	11	118529045	118529045	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TREH	.	.	.	.	.	.	431	19	318	0	.	46
TRERF1	55809	hgsc.bcm.edu	37	6	42232472	42232472	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRERF1	NM_033502	exon7	c.G1605A	p.G535G	.	.	121	5	98	0	.	230
TRIL	9865	bcgsc.ca	37	7	28995756	28995756	+	RNA	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	54	5	86	0	.	.
TRIM33	51592	bcgsc.ca	37	1	114948282	114948282	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRIM33	NM_033020	exon15	c.A2518C	p.I840L	.	.	397	10	310	0	.	1351
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu	37	5	180661428	180661428	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRIM41	NM_033549	exon6	c.1546delG	p.G516fs	.	.	155	10	233	0	.	226
TRIM52	84851	hgsc.bcm.edu	37	5	180687428	180687428	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRIM52	NM_032765	exon1	c.G387A	p.E129E	.	.	151	2	130	0	.	90
TRIM52	84851	hgsc.bcm.edu	37	5	180687440	180687440	+	Silent	SNP	T	T	C	rs80005177	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRIM52	NM_032765	exon1	c.A375G	p.E125E	.	.	156	22	125	0	T|0.991;C|0.009	90
TRIP10	9322	hgsc.bcm.edu	37	19	6751209	6751209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRIP10	NM_004240	exon14	c.T1625C	p.V542A	.	.	134	6	110	0	.	228
TRIP10	9322	hgsc.bcm.edu;broad.mit.edu	37	19	6750606	6750606	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRIP10	NM_004240	exon13	c.1451delC	p.S484fs	.	.	216	15	191	0	.	228
TRMT61B	55006	hgsc.bcm.edu	37	2	29087914	29087914	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRMT61B	NM_017910	exon2	c.T771C	p.S257S	.	.	88	3	86	0	.	90
TRPC4	7223	hgsc.bcm.edu	37	13	38211176	38211176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRPC4	NM_003306	exon11	c.A2813G	p.E938G	.	.	127	4	183	0	.	159
TRPC6	7225	hgsc.bcm.edu	37	11	101454149	101454149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRPC6	NM_004621	exon1	c.A86G	p.Q29R	.	.	67	4	42	0	.	93
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu	37	2	234879010	234879010	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRPM8	NM_024080	exon17	c.2295delC	p.H765fs	.	.	243	15	192	0	.	94
TRRAP	8295	hgsc.bcm.edu	37	7	98574152	98574152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRRAP	NM_001244580	exon54	c.A7985G	p.Q2662R	.	.	84	4	19	0	.	923
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu	37	7	98575870	98575870	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRRAP	NM_001244580	exon56	c.8401delA	p.K2801fs	.	.	261	17	127	0	.	923
TSFM	10102	hgsc.bcm.edu;broad.mit.edu	37	12	58190297	58190297	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSFM	NM_001172696	exon7	c.972delG	p.Q324fs	.	.	160	11	127	0	.	492
TSHR	7253	hgsc.bcm.edu;broad.mit.edu	37	14	81610522	81610522	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSHR	NM_000369	exon10	c.2120delG	p.R707fs	.	.	203	13	153	0	.	1650
TSHZ2	128553	hgsc.bcm.edu	37	20	51872669	51872669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSHZ2	NM_173485	exon2	c.T2672C	p.L891P	.	.	99	3	92	0	.	232
TSPAN15	23555	hgsc.bcm.edu	37	10	71211441	71211441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSPAN15	NM_012339	exon1	c.T91C	p.F31L	.	.	90	4	64	0	.	90
TSPAN18	90139	hgsc.bcm.edu;broad.mit.edu	37	11	44931375	44931375	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSPAN18	NM_130783	exon4	c.183delG	p.M61fs	.	.	149	11	110	0	.	68
TSPYL5	85453	hgsc.bcm.edu;broad.mit.edu	37	8	98289664	98289664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSPYL5	NM_033512	exon1	c.409delC	p.R137fs	.	.	189	13	179	0	.	136
TSR1	55720	hgsc.bcm.edu	37	17	2228075	2228075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSR1	NM_018128	exon13	c.A2069G	p.D690G	.	.	138	4	124	0	.	91
TSR3	115939	hgsc.bcm.edu;bcgsc.ca	37	16	1400082	1400082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001001410	exon4	c.A680G	p.E227G	.	.	129	5	70	0	.	.
TTC13	79573	hgsc.bcm.edu;broad.mit.edu	37	1	231044702	231044702	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTC13	NM_024525	exon21	c.2374delA	p.I792fs	.	.	217	13	147	0	.	92
TTC1	7265	hgsc.bcm.edu;broad.mit.edu	37	5	159476629	159476629	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTC1	NM_003314	exon6	c.650delA	p.E217fs	.	.	140	12	99	0	.	91
TTC3	7267	hgsc.bcm.edu;broad.mit.edu	37	21	38494152	38494152	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTC3	NM_001001894	exon12	c.936delG	p.L312fs	.	.	187	12	206	0	.	590
TTC39B	158219	bcgsc.ca	37	9	15225988	15225988	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTC39B	NM_001168340	exon3	c.298delA	p.T100fs	.	.	43	4	73	0	.	187
TTF1	7270	broad.mit.edu;bcgsc.ca	37	9	135251496	135251496	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTF1	NM_007344	exon11	c.2524delA	p.M842X	.	.	137	13	131	0	.	94
TTK	7272	hgsc.bcm.edu	37	6	80721476	80721476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTK	NM_003318	exon7	c.A759G	p.I253M	.	.	125	4	104	0	.	1299
TTN	7273	bcgsc.ca	37	2	179430312	179430312	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon326	c.T80547C	p.Y26849Y	.	.	174	6	152	0	.	636
TTN	7273	hgsc.bcm.edu	37	2	179560924	179560924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon114	c.T30875C	p.V10292A	.	.	99	4	67	0	.	636
TTN	7273	hgsc.bcm.edu	37	2	179579232	179579232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon91	c.A26269G	p.T8757A	.	.	93	3	98	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179483342	179483342	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon251	c.46935delA	p.K15645fs	.	.	129	12	83	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179528765	179528765	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon169	c.36341delA	p.K12114fs	.	.	215	13	187	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179614678	179614678	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_133379	exon46	c.12449delT	p.L4150fs	.	.	221	14	196	0	.	636
TUB	7275	hgsc.bcm.edu;broad.mit.edu	37	11	8117161	8117161	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TUB	NM_003320	exon6	c.679delG	p.G227fs	.	.	217	13	175	0	.	91
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu	37	22	18609172	18609172	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TUBA8	NM_018943	exon4	c.427delG	p.G143fs	.	.	171	11	134	0	.	90
TUBGCP3	10426	hgsc.bcm.edu	37	13	113170854	113170854	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TUBGCP3	NM_006322	exon17	c.A1986G	p.R662R	.	.	96	3	87	0	.	90
TUBGCP4	27229	hgsc.bcm.edu;broad.mit.edu	37	15	43675520	43675520	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TUBGCP4	NM_014444	exon7	c.541delG	p.G181fs	.	.	150	10	159	0	.	93
TULP2	7288	hgsc.bcm.edu;broad.mit.edu	37	19	49400644	49400644	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TULP2	NM_003323	exon3	c.42delG	p.G14fs	.	.	155	10	127	0	.	93
TYR	7299	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	89028385	89028385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TYR	NM_000372	exon5	c.G1441C	p.A481P	.	.	384	25	238	0	.	92
UACA	55075	hgsc.bcm.edu;broad.mit.edu	37	15	70959454	70959454	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UACA	NM_018003	exon16	c.3569delA	p.K1190fs	.	.	156	10	136	0	.	94
UBA3	9039	hgsc.bcm.edu;broad.mit.edu	37	3	69117114	69117114	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBA3	NM_003968	exon6	c.393delT	p.F131fs	.	.	208	13	167	0	.	227
UBAC1	10422	hgsc.bcm.edu;broad.mit.edu	37	9	138845578	138845578	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBAC1	NM_016172	exon3	c.281delA	p.K94fs	.	.	121	10	116	0	.	92
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu	37	11	5529234	5529234	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBQLN3	NM_017481	exon2	c.1555delC	p.R519fs	.	.	181	11	129	0	.	93
UBR2	23304	hgsc.bcm.edu;broad.mit.edu	37	6	42637938	42637938	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBR2	NM_015255	exon35	c.3990delA	p.I1330fs	.	.	157	10	137	0	.	94
UBTD2	92181	hgsc.bcm.edu;broad.mit.edu	37	5	171638950	171638950	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBTD2	NM_152277	exon3	c.589delT	p.S197fs	.	.	280	17	192	0	.	90
UFSP1	402682	hgsc.bcm.edu;broad.mit.edu	37	7	100486590	100486590	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UFSP1	NM_001015072	exon1	c.303delC	p.P101fs	.	.	174	11	135	0	.	22
UGDH	7358	hgsc.bcm.edu;broad.mit.edu	37	4	39515764	39515764	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UGDH	NM_003359	exon3	c.203delA	p.N68fs	.	.	155	10	136	0	.	156
UGT1A5	54579	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234622002	234622002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UGT1A5	NM_019078	exon1	c.T365C	p.L122S	.	.	232	89	179	0	.	3
UHMK1	127933	hgsc.bcm.edu	37	1	162473569	162473569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UHMK1	NM_175866	exon4	c.A779G	p.H260R	.	.	100	4	66	0	.	358
UNC45A	55898	hgsc.bcm.edu;broad.mit.edu	37	15	91488144	91488144	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNC45A	NM_018671	exon9	c.1050delG	p.V350fs	.	.	181	11	146	0	.	24
UNC79	57578	hgsc.bcm.edu;broad.mit.edu	37	14	94100954	94100954	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_020818	exon32	c.5273delC	p.A1758fs	.	.	208	15	196	0	.	.
UNC80	285175	hgsc.bcm.edu;broad.mit.edu	37	2	210682639	210682639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNC80	NM_182587	exon11	c.1656delC	p.D552fs	.	.	152	10	108	0	.	90
UNC80	285175	hgsc.bcm.edu;broad.mit.edu	37	2	210837002	210837002	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNC80	NM_032504	exon54	c.8136delA	p.L2712fs	.	.	320	19	279	0	.	90
UNK	85451	hgsc.bcm.edu;broad.mit.edu	37	17	73808634	73808634	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNK	NM_001080419	exon4	c.590delA	p.E197fs	.	.	156	11	89	0	.	68
UNKL	64718	hgsc.bcm.edu	37	16	1449385	1449385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNKL	NM_001193388	exon5	c.T724C	p.F242L	.	.	91	4	75	0	.	90
UPF2	26019	hgsc.bcm.edu;broad.mit.edu	37	10	12077139	12077139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UPF2	NM_080599	exon2	c.284delA	p.K95fs	.	.	170	11	131	0	.	515
URI1	8725	hgsc.bcm.edu;broad.mit.edu	37	19	30496293	30496293	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_003796	exon5	c.393delA	p.L131fs	.	.	279	17	199	0	.	.
URI1	8725	mdanderson.org	37	19	30500143	30500143	+	Silent	SNP	T	T	C	rs1127493	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_003796	exon8	c.T918C	p.D306D	.	.	85	23	74	0	T|0.979;C|0.021	.
USH2A	7399	hgsc.bcm.edu;broad.mit.edu	37	1	216062051	216062051	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USH2A	NM_206933	exon41	c.7940delC	p.P2647fs	.	.	172	11	99	0	.	115
USP12	219333	hgsc.bcm.edu	37	13	27664255	27664255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP12	NM_182488	exon5	c.A614G	p.D205G	.	.	118	2	130	0	.	522
USP12	219333	hgsc.bcm.edu	37	13	27679961	27679961	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP12	NM_182488	exon3	c.T250C	p.L84L	.	.	55	4	60	0	.	522
USP13	8975	hgsc.bcm.edu;broad.mit.edu	37	3	179501906	179501906	+	Frame_Shift_Del	DEL	T	T	-	rs34456126		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP13	NM_003940	exon21	c.2569delT	p.F857fs	.	.	169	10	180	0	.	659
USP32P2	220594	bcgsc.ca	37	17	18416768	18416768	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	107	11	69	0	.	.
USP34	9736	hgsc.bcm.edu;broad.mit.edu	37	2	61507429	61507429	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP34	NM_014709	exon39	c.5206delT	p.W1736fs	.	.	195	13	178	0	.	579
USP35	57558	hgsc.bcm.edu	37	11	77920940	77920940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP35	NM_020798	exon10	c.A2039G	p.E680G	.	.	188	7	109	0	.	637
USP37	57695	hgsc.bcm.edu	37	2	219353045	219353045	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP37	NM_020935	exon15	c.T1572C	p.S524S	.	.	158	4	119	0	.	661
USP38	84640	hgsc.bcm.edu	37	4	144109051	144109051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP38	NM_032557	exon2	c.T755C	p.L252P	.	.	87	2	100	0	.	660
USP47	55031	hgsc.bcm.edu;broad.mit.edu	37	11	11977603	11977603	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP47	NM_017944	exon27	c.3745delA	p.K1249fs	.	.	150	11	138	0	.	660
USP51	158880	hgsc.bcm.edu	37	X	55514365	55514365	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP51	NM_201286	exon2	c.T1008C	p.C336C	.	.	115	5	98	0	.	659
USP5	8078	hgsc.bcm.edu;broad.mit.edu	37	12	6965284	6965284	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP5	NM_003481	exon4	c.408delG	p.L136fs	.	.	165	10	160	0	.	659
USP6NL	9712	hgsc.bcm.edu	37	10	11505825	11505825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP6NL	NM_001080491	exon14	c.A1153G	p.K385E	.	.	82	4	64	0	.	628
UST	10090	hgsc.bcm.edu;broad.mit.edu	37	6	149340329	149340329	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UST	NM_005715	exon6	c.736delT	p.F246fs	.	.	175	11	127	0	.	92
UTP11L	51118	hgsc.bcm.edu	37	1	38483393	38483393	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP11L	NM_016037	exon3	c.179delA	p.E60fs	.	.	188	15	138	0	.	90
UTP14C	9724	hgsc.bcm.edu;broad.mit.edu	37	13	52603246	52603246	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP14C	NM_021645	exon2	c.306delA	p.V102fs	.	.	150	11	181	0	.	138
UTP15	84135	hgsc.bcm.edu;broad.mit.edu	37	5	72864105	72864105	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP15	NM_032175	exon3	c.136delT	p.F46fs	.	.	252	17	175	0	.	90
UTP15	84135	hgsc.bcm.edu;broad.mit.edu	37	5	72874641	72874641	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP15	NM_032175	exon10	c.1110delT	p.H370fs	.	.	150	10	129	0	.	90
UTP23	84294	hgsc.bcm.edu;broad.mit.edu	37	8	117783923	117783923	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP23	NM_032334	exon3	c.592delA	p.K198fs	.	.	158	10	129	0	.	226
UTY	7404	hgsc.bcm.edu;broad.mit.edu	37	Y	15447971	15447971	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTY	NM_001258249	exon18	c.2306delA	p.N769fs	.	.	172	12	135	0	.	136
VASH2	79805	hgsc.bcm.edu;broad.mit.edu	37	1	213146180	213146180	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VASH2	NM_024749	exon4	c.624delC	p.V208fs	.	.	246	17	156	0	.	90
VASN	114990	hgsc.bcm.edu;bcgsc.ca	37	16	4432163	4432163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VASN	NM_138440	exon2	c.G1285A	p.A429T	.	.	80	4	124	0	.	68
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu	37	3	42576497	42576497	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VIPR1	NM_004624	exon11	c.1041delC	p.I347fs	.	.	198	14	183	0	.	91
VIPR2	7434	hgsc.bcm.edu;broad.mit.edu	37	7	158902515	158902515	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VIPR2	NM_003382	exon3	c.247delT	p.Y83fs	.	.	146	11	77	0	.	91
VPS13C	54832	hgsc.bcm.edu	37	15	62283910	62283910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VPS13C	NM_020821	exon17	c.A1445G	p.E482G	.	.	151	5	143	0	.	92
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu	37	15	62299598	62299598	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VPS13C	NM_020821	exon15	c.1199delA	p.K400fs	.	.	249	15	166	0	.	92
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu	37	1	12439636	12439636	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VPS13D	NM_015378	exon57	c.11176delG	p.G3726fs	.	.	155	10	134	0	.	95
VPS4B	9525	hgsc.bcm.edu;broad.mit.edu	37	18	61067829	61067829	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VPS4B	NM_004869	exon6	c.592delT	p.S198fs	.	.	151	10	152	0	.	91
VPS8	23355	bcgsc.ca	37	3	184647414	184647414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VPS8	NM_001009921	exon32	c.A2761C	p.K921Q	.	.	85	7	59	0	.	91
VSIG10L	147645	hgsc.bcm.edu;bcgsc.ca	37	19	51835894	51835894	+	Missense_Mutation	SNP	C	C	G	rs200336358		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001163922	exon10	c.G2575C	p.A859P	.	.	129	11	122	0	.	.
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu	37	11	123994945	123994945	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VWA5A	NM_014622	exon10	c.1166delT	p.L389fs	.	.	232	14	121	0	.	92
VWDE	221806	broad.mit.edu;bcgsc.ca	37	7	12409832	12409832	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VWDE	NM_001135924	exon12	c.2100delA	p.K700fs	.	.	65	9	75	0	.	68
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu	37	10	88232474	88232474	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WAPAL	NM_015045	exon6	c.1788delT	p.F596fs	.	.	131	12	142	0	.	91
WAS	7454	bcgsc.ca	37	X	48549532	48549532	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WAS	NM_000377	exon12	c.A1488G	p.E496E	.	.	173	5	125	0	.	563
WASF1	8936	hgsc.bcm.edu;broad.mit.edu	37	6	110448789	110448789	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WASF1	NM_001024935	exon3	c.16delA	p.R6fs	.	.	164	10	121	0	.	90
WDR17	116966	hgsc.bcm.edu;broad.mit.edu	37	4	177052791	177052791	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR17	NM_170710	exon8	c.1072delT	p.F358fs	.	.	174	12	225	0	.	95
WDR4	10785	hgsc.bcm.edu	37	21	44282502	44282502	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR4	NM_018669	exon5	c.T456C	p.A152A	.	.	43	3	41	0	.	91
WDR46	9277	hgsc.bcm.edu;broad.mit.edu	37	6	33247088	33247088	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR46	NM_005452	exon15	c.1798delG	p.A600fs	.	.	159	10	141	0	.	68
WDR60	55112	bcgsc.ca	37	7	158672477	158672477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR60	NM_018051	exon5	c.A676G	p.K226E	.	.	259	10	155	0	.	92
WDR66	144406	hgsc.bcm.edu	37	12	122359397	122359397	+	Silent	SNP	G	G	A	rs58098972		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR66	NM_001178003	exon2	c.G186A	p.G62G	.	.	75	5	49	0	.	92
WDR72	256764	hgsc.bcm.edu;broad.mit.edu	37	15	54004983	54004983	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR72	NM_182758	exon7	c.697delT	p.S233fs	.	.	229	14	204	0	.	92
WDR87	83889	hgsc.bcm.edu	37	19	38377404	38377404	+	Missense_Mutation	SNP	C	C	T	rs201328117		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_031951	exon6	c.G6790A	p.E2264K	.	.	45	7	45	0	.	.
WDR87	83889	hgsc.bcm.edu	37	19	38384513	38384513	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_031951	exon4	c.A1713T	p.T571T	.	.	79	4	61	0	.	.
WDR96	80217	hgsc.bcm.edu	37	10	105921776	105921776	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR96	NM_025145	exon26	c.T3357C	p.A1119A	.	.	95	4	114	0	.	95
WDSUB1	151525	hgsc.bcm.edu;broad.mit.edu	37	2	160092653	160092653	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDSUB1	NM_152528	exon11	c.1322delA	p.K441fs	.	.	148	11	110	0	.	90
WFDC3	140686	hgsc.bcm.edu;broad.mit.edu	37	20	44416474	44416474	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WFDC3	NM_080614	exon5	c.358+1G>-	.	.	.	218	14	197	0	.	90
WHSC1	7468	hgsc.bcm.edu;broad.mit.edu	37	4	1957786	1957786	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	WHSC1,NS,malignant_melanoma,-2	WHSC1	NM_133335	exon15	c.2752delT	p.F918fs	.	.	169	11	129	0	.	664
WHSC1L1	54904	hgsc.bcm.edu	37	8	38205330	38205330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WHSC1L1	NM_017778	exon2	c.A360G	p.R120R	.	.	75	4	76	0	.	658
WIPF1	7456	hgsc.bcm.edu;broad.mit.edu	37	2	175436765	175436765	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WIPF1	NM_003387	exon5	c.768delC	p.P256fs	.	.	197	12	135	0	.	92
WNK3	65267	hgsc.bcm.edu	37	X	54263832	54263832	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WNK3	NM_020922	exon20	c.T4167C	p.N1389N	.	.	41	4	49	0	.	441
WNT5B	81029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1741875	1741875	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WNT5B	NM_032642	exon3	c.C132G	p.A44A	.	.	149	61	129	0	.	562
WWOX	51741	hgsc.bcm.edu;broad.mit.edu	37	16	78143722	78143722	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WWOX	NM_130791	exon3	c.220delT	p.F74fs	.	.	146	10	102	0	.	90
WWP1	11059	hgsc.bcm.edu;bcgsc.ca	37	8	87410810	87410810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WWP1	NM_007013	exon7	c.A482G	p.Q161R	.	.	146	5	132	0	.	659
WWP1	11059	hgsc.bcm.edu;broad.mit.edu	37	8	87454970	87454970	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WWP1	NM_007013	exon18	c.1961delT	p.L654fs	.	.	167	12	144	0	.	659
XDH	7498	broad.mit.edu;bcgsc.ca	37	2	31609293	31609293	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XDH	NM_000379	exon9	c.780delG	p.G260fs	.	.	81	9	79	0	.	158
XK	7504	hgsc.bcm.edu;bcgsc.ca	37	X	37553772	37553772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XK	NM_021083	exon2	c.T479C	p.V160A	.	.	116	5	100	0	.	130
XPO4	64328	bcgsc.ca	37	13	21381732	21381732	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XPO4	NM_022459	exon13	c.1681delA	p.I561fs	.	.	47	5	64	0	.	272
XYLB	9942	hgsc.bcm.edu	37	3	38417621	38417621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XYLB	NM_005108	exon13	c.T1018C	p.S340P	.	.	130	5	129	0	.	91
XYLT2	64132	hgsc.bcm.edu;broad.mit.edu	37	17	48435819	48435819	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XYLT2	NM_022167	exon10	c.2193delC	p.L731fs	.	.	151	10	141	0	.	91
YBX2	51087	broad.mit.edu;bcgsc.ca	37	17	7193314	7193314	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YBX2	NM_015982	exon6	c.821delC	p.P274fs	.	.	64	7	99	0	.	90
YJEFN3	374887	hgsc.bcm.edu;broad.mit.edu	37	19	19645920	19645920	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YJEFN3	NM_198537	exon4	c.396delG	p.V132fs	.	.	147	13	103	0	.	90
YKT6	10652	hgsc.bcm.edu	37	7	44247796	44247796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YKT6	NM_006555	exon5	c.T458C	p.L153P	.	.	92	4	61	0	.	90
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu	37	14	75264632	75264632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YLPM1	NM_019589	exon5	c.2632delA	p.K878fs	.	.	196	12	148	0	.	71
YME1L1	10730	hgsc.bcm.edu	37	10	27408356	27408356	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YME1L1	NM_139312	exon15	c.T1605C	p.A535A	.	.	66	3	43	0	.	91
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu	37	5	112917159	112917159	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YTHDC2	NM_022828	exon25	c.3400delT	p.F1134fs	.	.	249	15	178	0	.	92
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu	37	5	112926912	112926912	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YTHDC2	NM_022828	exon27	c.4000delT	p.F1334fs	.	.	165	11	128	0	.	92
ZAP70	7535	hgsc.bcm.edu	37	2	98351044	98351044	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZAP70	NM_001079	exon9	c.C951T	p.S317S	.	.	99	4	80	0	.	955
ZBED5	58486	hgsc.bcm.edu	37	11	10875063	10875063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_021211	exon3	c.T1430C	p.L477P	.	.	94	4	95	0	.	.
ZBTB12	221527	hgsc.bcm.edu;broad.mit.edu	37	6	31868583	31868583	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZBTB12	NM_181842	exon2	c.500delC	p.P167fs	.	.	165	11	59	0	.	90
ZBTB33	10009	hgsc.bcm.edu	37	X	119387833	119387833	+	Missense_Mutation	SNP	C	C	A	rs77815464		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZBTB33	NM_006777	exon2	c.C563A	p.S188Y	.	.	92	1	92	0	.	132
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu	37	16	88691079	88691079	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZC3H18	NM_144604	exon12	c.1968delC	p.V656fs	.	.	209	14	126	0	.	69
ZCCHC24	219654	hgsc.bcm.edu;broad.mit.edu	37	10	81154153	81154153	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZCCHC24	NM_153367	exon3	c.491delA	p.K164fs	.	.	167	11	197	0	.	153
ZCCHC6	79670	hgsc.bcm.edu	37	9	88937856	88937856	+	Missense_Mutation	SNP	T	T	C	rs75851694	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZCCHC6	NM_024617	exon13	c.A2809G	p.K937E	.	.	165	13	195	0	T|0.980;C|0.020	92
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu	37	7	99998706	99998706	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZCWPW1	NM_017984	exon18	c.1878delG	p.G626fs	.	.	208	13	95	0	.	90
ZDBF2	57683	hgsc.bcm.edu	37	2	207162017	207162017	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZDBF2	NM_020923	exon4	c.T108C	p.R36R	.	.	134	2	116	0	.	3
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	16	72993684	72993684	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFHX3	NM_006885	exon2	c.361delG	p.D121fs	.	.	180	14	166	0	.	72
ZFHX3	463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72829897	72829897	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFHX3	NM_006885	exon9	c.C6684G	p.P2228P	.	.	173	68	143	0	.	72
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu	37	15	42742679	42742679	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFP106	NM_022473	exon2	c.1722delA	p.K574fs	.	.	156	10	132	0	.	515
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu	37	20	50713933	50713933	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFP64	NM_199427	exon7	c.955delC	p.R319fs	.	.	182	11	131	0	.	155
ZKSCAN7	55888	hgsc.bcm.edu;broad.mit.edu	37	3	44606986	44606986	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_018651	exon3	c.431delC	p.A144fs	.	.	164	11	123	0	.	.
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu	37	1	40751681	40751681	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZMPSTE24	NM_005857	exon8	c.1039delA	p.K347fs	.	.	262	16	210	0	.	226
ZNF133	7692	hgsc.bcm.edu	37	20	18296753	18296753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF133	NM_001083330	exon4	c.A1255G	p.S419G	.	.	81	3	70	0	.	92
ZNF136	7695	hgsc.bcm.edu;broad.mit.edu	37	19	12296931	12296931	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF136	NM_003437	exon3	c.133delA	p.K45fs	.	.	171	14	137	0	.	92
ZNF148	7707	hgsc.bcm.edu;broad.mit.edu	37	3	124952718	124952718	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF148	NM_021964	exon9	c.852delA	p.K284fs	.	.	131	10	100	0	.	94
ZNF148	7707	hgsc.bcm.edu;broad.mit.edu	37	3	125007010	125007010	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF148	NM_021964	exon5	c.396delA	p.K132fs	.	.	126	10	106	0	.	94
ZNF17	7565	hgsc.bcm.edu;broad.mit.edu	37	19	57932806	57932806	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF17	NM_006959	exon3	c.1946delA	p.Q649fs	.	.	178	11	121	0	.	90
ZNF195	7748	hgsc.bcm.edu	37	11	3380971	3380971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF195	NM_001130520	exon6	c.T1267C	p.S423P	.	.	68	3	59	0	.	90
ZNF195	7748	hgsc.bcm.edu;broad.mit.edu	37	11	3392251	3392251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF195	NM_001256825	exon4	c.192delA	p.K64fs	.	.	128	10	89	0	.	90
ZNF217	7764	hgsc.bcm.edu	37	20	52193705	52193705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF217	NM_006526	exon3	c.T1598C	p.V533A	.	.	94	4	75	0	.	723
ZNF248	57209	hgsc.bcm.edu;broad.mit.edu	37	10	38121237	38121237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF248	NM_021045	exon6	c.1046delG	p.G349fs	.	.	246	15	173	0	.	91
ZNF273	10793	hgsc.bcm.edu;broad.mit.edu	37	7	64388426	64388426	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF273	NM_021148	exon4	c.720delA	p.G240fs	.	.	185	11	75	0	.	90
ZNF274	10782	bcgsc.ca	37	19	58718362	58718362	+	Splice_Site	SNP	C	C	G	rs77207323		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF274	.	.	.	.	.	.	71	9	46	0	.	91
ZNF274	10782	bcgsc.ca	37	19	58718365	58718365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF274	.	.	.	.	.	.	72	5	46	0	.	91
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	22842944	22842944	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF280B	NM_080764	exon4	c.A780T	p.A260A	.	.	100	17	81	0	.	70
ZNF280C	55609	hgsc.bcm.edu;broad.mit.edu	37	X	129370543	129370543	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF280C	NM_017666	exon7	c.564delA	p.K188fs	.	.	162	12	107	0	.	132
ZNF280D	54816	broad.mit.edu;bcgsc.ca	37	15	56958685	56958685	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF280D	NM_017661	exon16	c.1902delA	p.K634fs	.	.	68	7	84	0	.	46
ZNF280D	54816	hgsc.bcm.edu;broad.mit.edu	37	15	56935186	56935186	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF280D	NM_017661	exon20	c.2223delA	p.K741fs	.	.	291	18	257	0	.	46
ZNF284	342909	hgsc.bcm.edu	37	19	44590888	44590888	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001037813	exon5	c.A1257G	p.R419R	.	.	118	3	119	0	.	.
ZNF286A	57335	hgsc.bcm.edu;broad.mit.edu	37	17	15619756	15619756	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF286A	NM_020652	exon6	c.718delA	p.K240fs	.	.	234	14	181	0	.	90
ZNF324B	388569	hgsc.bcm.edu;broad.mit.edu	37	19	58967548	58967548	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF324B	NM_207395	exon4	c.1237delT	p.F413fs	.	.	229	14	140	0	.	91
ZNF330	27309	hgsc.bcm.edu;broad.mit.edu	37	4	142154925	142154925	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF330	NM_014487	exon10	c.745delG	p.G249fs	.	.	163	12	201	0	.	90
ZNF354A	6940	hgsc.bcm.edu;broad.mit.edu	37	5	178139937	178139937	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF354A	NM_005649	exon5	c.942delT	p.F314fs	.	.	158	12	104	0	.	93
ZNF354B	117608	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178311121	178311121	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF354B	NM_058230	exon5	c.1668delA	p.G556fs	.	.	129	31	110	0	.	92
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu	37	5	178507066	178507066	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF354C	NM_014594	exon5	c.1633delT	p.F545fs	.	.	186	12	139	0	.	91
ZNF358	140467	hgsc.bcm.edu	37	19	7585364	7585364	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF358	NM_018083	exon2	c.A1236T	p.A412A	.	.	21	9	36	0	.	90
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu	37	5	71739993	71739993	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF366	NM_152625	exon5	c.1825delG	p.E609fs	.	.	143	10	123	0	.	91
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu	37	2	180634453	180634453	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF385B	NM_152520	exon3	c.30delT	p.F10fs	.	.	146	10	118	0	.	23
ZNF385C	201181	hgsc.bcm.edu;broad.mit.edu	37	17	40189831	40189831	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF385C	NM_001242704	exon2	c.86delC	p.P29fs	.	.	157	10	153	0	.	22
ZNF408	79797	hgsc.bcm.edu	37	11	46724728	46724728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF408	NM_024741	exon4	c.A587C	p.E196A	.	.	122	7	110	0	.	90
ZNF416	55659	hgsc.bcm.edu;broad.mit.edu	37	19	58084579	58084579	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF416	NM_017879	exon4	c.693delT	p.F231fs	.	.	201	13	118	0	.	90
ZNF41	7592	hgsc.bcm.edu	37	X	47307869	47307869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF41	NM_007130	exon5	c.A1300G	p.T434A	.	.	63	4	54	0	.	133
ZNF441	126068	bcgsc.ca	37	19	11891004	11891004	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF441	NM_152355	exon4	c.T365A	p.V122D	.	.	142	7	124	0	.	69
ZNF44	51710	hgsc.bcm.edu	37	19	12383437	12383437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF44	NM_001164276	exon5	c.T1777C	p.S593P	.	.	77	4	59	0	.	23
ZNF446	55663	hgsc.bcm.edu	37	19	58989035	58989035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF446	NM_017908	exon3	c.T374C	p.L125P	.	.	136	3	106	0	.	91
ZNF449	203523	hgsc.bcm.edu	37	X	134481371	134481371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF449	NM_152695	exon2	c.A328G	p.R110G	.	.	76	3	60	0	.	132
ZNF469	84627	hgsc.bcm.edu	37	16	88494980	88494980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001127464	exon1	c.T1102C	p.F368L	.	.	111	5	74	0	.	.
ZNF493	284443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	21588652	21588652	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF493	NM_145326	exon3	c.250delC	p.P84fs	.	.	104	11	74	0	.	516
ZNF516	9658	hgsc.bcm.edu;broad.mit.edu	37	18	74153203	74153203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF516	NM_014643	exon3	c.1808delC	p.P603fs	.	.	136	10	107	0	.	69
ZNF516	9658	mdanderson.org	37	18	74090964	74090964	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF516	NM_014643	exon4	c.C3106G	p.P1036A	.	.	33	5	31	0	.	69
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu	37	4	10445202	10445202	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF518B	NM_053042	exon3	c.2751delT	p.F917fs	.	.	158	10	142	0	.	72
ZNF547	284306	hgsc.bcm.edu;broad.mit.edu	37	19	57883160	57883160	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF547	NM_173631	exon3	c.35delT	p.V12fs	.	.	270	17	180	0	.	91
ZNF598	90850	hgsc.bcm.edu	37	16	2048327	2048327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF598	NM_178167	exon14	c.T2621C	p.L874P	.	.	76	3	96	0	.	432
ZNF607	84775	hgsc.bcm.edu	37	19	38190282	38190282	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF607	NM_032689	exon5	c.G750A	p.E250E	.	.	116	2	83	0	.	90
ZNF646	9726	hgsc.bcm.edu	37	16	31089058	31089058	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF646	NM_014699	exon2	c.T1413C	p.G471G	.	.	109	4	94	0	.	153
ZNF658	26149	bcgsc.ca	37	9	40774511	40774511	+	Missense_Mutation	SNP	A	A	G	rs1547270		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF658	NM_033160	exon5	c.T764C	p.I255T	.	.	513	23	413	2	A|1.000;|0.000	45
ZNF674	641339	hgsc.bcm.edu	37	X	46401522	46401522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF674	NM_001146291	exon3	c.A1G	p.M1V	.	.	78	3	38	0	.	67
ZNF675	171392	hgsc.bcm.edu;bcgsc.ca	37	19	23837367	23837367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF675	NM_138330	exon4	c.A368G	p.K123R	.	.	123	5	102	0	.	228
ZNF714	148206	hgsc.bcm.edu	37	19	21299777	21299777	+	Missense_Mutation	SNP	G	G	A	rs111443257		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF714	NM_182515	exon5	c.G307A	p.E103K	.	.	107	7	97	0	.	67
ZNF724P	440519	broad.mit.edu	37	19	23415088	23415088	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF724P	.	.	.	.	.	.	36	3	34	0	.	23
ZNF733P	643955	bcgsc.ca	37	7	62752415	62752415	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	175	15	80	0	.	.
ZNF778	197320	hgsc.bcm.edu	37	16	89294115	89294115	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001201407	exon7	c.A1419G	p.G473G	.	.	59	3	53	0	.	.
ZNF780A	284323	hgsc.bcm.edu	37	19	40589113	40589113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF780A	NM_001142579	exon5	c.A89G	p.D30G	.	.	135	3	103	0	.	22
ZNF790	388536	bcgsc.ca	37	19	37314200	37314200	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF790	NM_206894	exon4	c.A216G	p.R72R	.	.	185	6	155	0	.	92
ZNF800	168850	hgsc.bcm.edu	37	7	127026148	127026148	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF800	NM_176814	exon3	c.T123C	p.S41S	.	.	91	4	83	0	.	23
ZNF805	390980	hgsc.bcm.edu;broad.mit.edu	37	19	57766049	57766049	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001023563	exon4	c.1862delC	p.T621fs	.	.	206	13	129	0	.	.
ZNF813	126017	hgsc.bcm.edu;broad.mit.edu	37	19	53995078	53995078	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF813	NM_001004301	exon4	c.1592delT	p.V531fs	.	.	170	11	108	0	.	67
ZNF816	125893	hgsc.bcm.edu	37	19	53454471	53454471	+	Missense_Mutation	SNP	G	G	C	rs79566976		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF816	NM_001202457	exon4	c.C557G	p.A186G	.	.	115	8	80	0	.	68
ZNF816	125893	hgsc.bcm.edu	37	19	53454475	53454475	+	Missense_Mutation	SNP	C	C	T	rs79186164	byfrequency	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF816	NM_001202457	exon4	c.G553A	p.G185S	.	.	121	4	82	0	C|0.993;T|0.007	68
ZNF8	7554	hgsc.bcm.edu;broad.mit.edu	37	19	58806805	58806805	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF8	NM_021089	exon4	c.1631delA	p.Q544fs	.	.	117	10	90	0	.	91
ZNF92	168374	hgsc.bcm.edu	37	7	64863524	64863524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF92	NM_152626	exon4	c.G497A	p.R166K	.	.	91	2	37	0	.	514
ZNFX1	57169	bcgsc.ca	37	20	47865510	47865510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNFX1	NM_021035	exon14	c.A4051T	p.T1351S	.	.	207	6	163	1	.	24
CREB3L1	90993	hgsc.bcm.edu;bcgsc.ca	37	11	46342258	46342259	+	Splice_Site	DNP	CA	CA	AG	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
EI24	9538	hgsc.bcm.edu	37	11	125452298	125452299	+	Missense_Mutation	DNP	AG	AG	GA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.K281R	.	.	.	.	.	.	.	
CEP290	80184	hgsc.bcm.edu	37	12	88454605	88454606	+	Splice_Site	DNP	AC	AC	TA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
OR11G2	390439	hgsc.bcm.edu	37	14	20666174	20666175	+	Missense_Mutation	DNP	GC	GC	CA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.C227S	.	.	.	.	.	.	.	
OR11H12	440153	bcgsc.ca	37	14	19806889	19806890	+	RNA	DNP	AA	AA	CC	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
CCDC144B	284047	bcgsc.ca	37	17	18486814	18486815	+	RNA	DNP	CC	CC	TT	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
CCDC144B	284047	bcgsc.ca	37	17	18498058	18498059	+	RNA	DNP	TC	TC	CA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
PLCD3	113026	bcgsc.ca	37	17	43192548	43192549	+	Silent	DNP	GT	GT	TC	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	GT	GT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
CYP2F1	1572	hgsc.bcm.edu	37	19	41622106	41622107	+	Missense_Mutation	DNP	AG	AG	GC	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.S5A	.	.	.	.	.	.	.	
LCE4A	199834	hgsc.bcm.edu	37	1	152681679	152681680	+	Missense_Mutation	DNP	CC	CC	GT	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.S43C	.	.	.	.	.	.	.	
BRD1	23774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	50187702	50187703	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.G780L	.	.	.	.	.	.	.	
CD207	50489	hgsc.bcm.edu	37	2	71062832	71062833	+	Splice_Site	DNP	TG	TG	GC	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
AC114755.7	0	bcgsc.ca	37	2	106992963	106992964	+	RNA	DNP	AT	AT	GG	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
MUC4	4585	hgsc.bcm.edu	37	3	195518119	195518120	+	Missense_Mutation	DNP	AT	AT	TG	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.M111Q	.	.	.	.	.	.	.	
AC024937.6	0	bcgsc.ca	37	3	195664672	195664673	+	RNA	DNP	AT	AT	CA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
KRASP1	3844	bcgsc.ca	37	6	54635395	54635396	+	RNA	DNP	AC	AC	CT	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
SSPO	23145	hgsc.bcm.edu	37	7	149476671	149476672	+	Silent	DNP	TG	TG	CT	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
GTF2IRD2P1	401375	broad.mit.edu	37	7	72664021	72664022	+	RNA	DNP	AT	AT	CA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AT	AT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
COL26A1	136227	bcgsc.ca	37	7	101200672	101200673	+	Missense_Mutation	DNP	AG	AG	GA	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	.	.	.	.	.	
GRIA3	2892	hgsc.bcm.edu	37	X	122336607	122336608	+	Missense_Mutation	DNP	GC	GC	CG	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	p.A130R	.	.	.	.	.	.	.	
