Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA12	26154	bcgsc.ca	37	2	215868964	215868964	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABCA12	NM_173076	exon20	c.T2652C	p.A884A	.	.	94	4	91	0	.	99
ABCA13	154664	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	48318670	48318670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABCA13	NM_152701	exon18	c.C7879A	p.Q2627K	.	.	55	20	63	0	.	521
ABI3BP	25890	hgsc.bcm.edu;bcgsc.ca	37	3	100569517	100569517	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABI3BP	NM_015429	exon14	c.A1287G	p.P429P	.	.	77	5	90	0	.	138
ACADVL	37	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7123814	7123814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ACADVL	NM_001270447	exon4	c.C239A	p.S80Y	.	.	102	36	79	0	.	93
ADAM32	203102	bcgsc.ca	37	8	39091581	39091581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ADAM32	NM_145004	exon16	c.T1798C	p.S600P	.	.	81	4	70	0	.	227
ADAM9	8754	bcgsc.ca	37	8	38871507	38871507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ADAM9	NM_003816	exon4	c.T278C	p.V93A	.	.	180	6	99	0	.	227
AGAP2	116986	bcgsc.ca	37	12	58123479	58123479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AGAP2	NM_001122772	exon13	c.A2500G	p.R834G	.	.	108	5	100	0	.	716
AHDC1	27245	bcgsc.ca	37	1	27875825	27875825	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AHDC1	NM_001029882	exon6	c.C2802A	p.A934A	.	.	111	5	202	1	.	90
ALDH1L2	160428	bcgsc.ca	37	12	105424187	105424187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ALDH1L2	NM_001034173	exon21	c.G2431A	p.V811M	.	.	84	4	53	0	.	91
AMHR2	269	bcgsc.ca	37	12	53823319	53823319	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AMHR2	NM_020547	exon8	c.A1050G	p.G350G	.	.	138	5	132	0	.	628
ANKRD55	79722	bcgsc.ca	37	5	55406953	55406953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ANKRD55	NM_024669	exon10	c.C1622G	p.P541R	.	.	142	5	71	0	.	91
ANXA8L2	244	hgsc.bcm.edu	37	10	47756662	47756662	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ANXA8L2	NM_001630	exon8	c.576delT	p.N192fs	.	.	165	10	142	0	.	1
AP4E1	23431	bcgsc.ca	37	15	51285610	51285610	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AP4E1	NM_007347	exon17	c.2134delA	p.K712fs	.	.	59	6	79	0	.	90
APLP2	334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130011950	130011950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	APLP2	NM_001642	exon17	c.T2171G	p.I724S	.	.	111	33	91	0	.	93
AQP3	360	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33442307	33442307	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AQP3	NM_004925	exon5	c.A702G	p.A234A	.	.	60	21	69	1	.	90
ARHGAP5	394	broad.mit.edu	37	14	32560766	32560766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ARHGAP5	NM_001173	exon2	c.A891T	p.L297F	.	.	53	5	88	1	.	94
ARID4A	5926	bcgsc.ca	37	14	58831470	58831470	+	Missense_Mutation	SNP	A	A	G	rs78751371	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ARID4A	NM_002892	exon20	c.A2663G	p.D888G	.	.	54	4	85	0	A|0.999;T|0.001	231
ASPM	259266	bcgsc.ca	37	1	197111469	197111469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ASPM	NM_001206846	exon3	c.A1913G	p.K638R	.	.	249	7	174	0	.	615
ATP12A	479	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25274939	25274939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	ATP12A,NS,carcinoma,+1	ATP12A	NM_001185085	exon13	c.A1778G	p.D593G	.	.	140	60	135	0	.	137
ATP7A	538	bcgsc.ca	37	X	77284804	77284804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ATP7A	NM_000052	exon15	c.T2974C	p.S992P	.	.	106	5	84	0	.	130
B4GALT6	9331	bcgsc.ca	37	18	29207023	29207023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	B4GALT6	NM_004775	exon7	c.A838G	p.I280V	.	.	81	4	78	0	.	90
BAZ1B	9031	bcgsc.ca	37	7	72891516	72891516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BAZ1B	NM_032408	exon7	c.A2275G	p.T759A	.	.	218	6	237	0	.	159
BHLHE41	79365	bcgsc.ca	37	12	26276611	26276611	+	Missense_Mutation	SNP	T	T	C	rs75677280	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BHLHE41	NM_030762	exon4	c.A298G	p.T100A	.	.	81	4	102	0	.	226
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BMS1	NM_014753	exon16	c.G2634T	p.E878D	.	.	30	3	25	0	.	93
BRCA2	675	bcgsc.ca	37	13	32906862	32906862	+	Missense_Mutation	SNP	T	T	C	rs80358418	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BRCA2	NM_000059	exon10	c.T1247C	p.I416T	.	.	84	4	103	0	.	3153
BVES	11149	broad.mit.edu;bcgsc.ca	37	6	105581297	105581297	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BVES	NM_001199563	exon2	c.156delT	p.F52fs	.	.	84	8	146	0	.	90
C12orf39	80763	bcgsc.ca	37	12	21684119	21684119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	C12orf39	NM_030572	exon6	c.T341C	p.L114P	.	.	99	4	153	1	.	90
C3orf17	25871	bcgsc.ca	37	3	112729998	112729998	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	C3orf17	NM_015412	exon6	c.T807C	p.S269S	.	.	156	6	189	0	.	90
C7orf31	136895	bcgsc.ca	37	7	25194666	25194666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	C7orf31	NM_138811	exon6	c.A559G	p.T187A	.	.	168	5	137	1	.	90
CACNA1B	774	hgsc.bcm.edu	37	9	140773613	140773613	+	Splice_Site	SNP	T	T	A	rs201604190		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	CACNA1B,NS,carcinoma,0	CACNA1B	NM_001243812	exon2	c.390+2T>A	.	.	.	77	6	51	1	.	138
CACNG4	27092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65026831	65026831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CACNG4	NM_014405	exon4	c.G695A	p.R232K	.	.	173	68	150	0	.	90
CAMTA1	23261	bcgsc.ca	37	1	7797597	7797597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CAMTA1	NM_015215	exon15	c.A3625G	p.K1209E	.	.	86	4	113	0	.	520
CARD14	79092	bcgsc.ca	37	17	78180851	78180851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CARD14	NM_024110	exon20	c.T2774C	p.V925A	.	.	137	6	79	0	.	231
CASD1	64921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	94164818	94164818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CASD1	NM_022900	exon8	c.G826C	p.E276Q	.	.	194	77	191	0	.	70
CC2D2B	387707	bcgsc.ca	37	10	97791673	97791673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CC2D2B	NM_001159747	exon12	c.A1114G	p.T372A	.	.	224	8	193	0	.	69
CCDC125	202243	bcgsc.ca	37	5	68578778	68578778	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CCDC125	NM_176816	exon11	c.T1314C	p.A438A	.	.	118	6	91	0	.	90
CCDC146	57639	bcgsc.ca	37	7	76866342	76866342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CCDC146	NM_020879	exon3	c.A235G	p.M79V	.	.	98	4	102	0	.	70
CCSER2	54462	bcgsc.ca	37	10	86223707	86223707	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_018999	exon7	c.T2083C	p.L695L	.	.	114	5	115	1	.	.
CDH24	64403	bcgsc.ca	37	14	23518860	23518860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CDH24	NM_022478	exon11	c.A1687G	p.N563D	.	.	44	4	61	0	.	90
CELF6	60677	hgsc.bcm.edu;bcgsc.ca	37	15	72581260	72581260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CELF6	NM_001172684	exon9	c.G1042T	p.G348C	.	.	207	92	194	0	.	154
CENPJ	55835	bcgsc.ca	37	13	25478135	25478135	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CENPJ	NM_018451	exon8	c.A2754G	p.E918E	.	.	110	5	110	0	.	92
CEP72	55722	bcgsc.ca	37	5	619226	619226	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CEP72	NM_018140	exon2	c.T204C	p.S68S	.	.	159	5	109	0	.	69
CHD4	1108	bcgsc.ca	37	12	6705202	6705202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHD4	NM_001273	exon13	c.A1994G	p.D665G	.	.	89	5	126	2	.	228
CHRM5	1133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34355738	34355738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	CHRM5,brain,glioma,-1	CHRM5	NM_012125	exon3	c.T820C	p.S274P	.	.	54	24	33	0	.	91
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	73767842	73767842	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHST3	NM_004273	exon3	c.C1053T	p.S351S	.	.	39	19	28	0	.	90
CILP	8483	bcgsc.ca	37	15	65500015	65500015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CILP	NM_003613	exon3	c.T149C	p.L50P	.	.	192	7	183	0	.	97
CKAP5	9793	bcgsc.ca	37	11	46818446	46818446	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CKAP5	NM_001008938	exon12	c.A1383G	p.E461E	.	.	147	6	142	0	.	92
CLEC9A	283420	bcgsc.ca	37	12	10213810	10213810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CLEC9A	NM_207345	exon6	c.A257G	p.K86R	.	.	83	4	103	0	.	91
CLN3	1201	bcgsc.ca	37	16	28495373	28495373	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CLN3	NM_001042432	exon10	c.A744G	p.A248A	.	.	69	4	94	0	.	90
CNTROB	116840	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7851016	7851016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CNTROB	NM_001037144	exon14	c.G2121C	p.E707D	.	.	124	72	107	0	.	153
COL11A2	1302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33141808	33141808	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COL11A2	NM_080680	exon33	c.C2509A	p.R837R	.	.	187	66	158	0	.	95
COMP	1311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18899995	18899995	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COMP	NM_000095	exon5	c.C502T	p.L168L	.	.	82	31	87	0	.	90
CPA5	93979	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	130007288	130007288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CPA5	NM_080385	exon11	c.C914T	p.A305V	.	.	301	91	269	0	.	92
CREB3L2	64764	bcgsc.ca	37	7	137586166	137586166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CREB3L2	NM_194071	exon8	c.T977C	p.V326A	.	.	89	5	77	0	.	92
CSDAP1	440359	ucsc.edu;bcgsc.ca	37	16	31580081	31580081	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	.	.	.	.	.	.	47	15	52	0	.	.
CSMD3	114788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	113585826	113585826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CSMD3	NM_198123	exon24	c.C3946A	p.R1316S	.	.	134	35	116	0	.	1132
CTAGE7P	119437	bcgsc.ca	37	10	131906633	131906633	+	RNA	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	.	.	.	.	.	.	32	4	77	0	.	.
CYP11B2	1585	hgsc.bcm.edu;bcgsc.ca	37	8	143996601	143996601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CYP11B2	NM_000498	exon3	c.G456C	p.K152N	.	.	297	24	196	0	.	90
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu	37	8	88885079	88885079	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCAF4L2	NM_152418	exon1	c.1121delG	p.G374fs	.	.	175	13	76	0	.	91
DCP1A	55802	hgsc.bcm.edu;ucsc.edu	37	3	53326495	53326495	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCP1A	NM_018403	exon7	c.A987T	p.A329A	.	.	431	163	465	0	.	90
DCTN1	1639	bcgsc.ca	37	2	74597419	74597419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCTN1	NM_004082	exon12	c.T1181C	p.L394P	.	.	145	5	92	0	.	95
DDX46	9879	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	134121198	134121198	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DDX46	NM_014829	exon11	c.T1386A	p.T462T	.	.	170	35	157	0	.	227
DENND5B	160518	bcgsc.ca	37	12	31632622	31632622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DENND5B	NM_144973	exon3	c.805delT	p.Y269fs	.	.	41	5	75	0	.	24
DHX34	9704	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47876048	47876048	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DHX34	NM_014681	exon8	c.C1830A	p.A610A	.	.	159	106	186	0	.	231
DIAPH1	1729	bcgsc.ca	37	5	140962784	140962784	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DIAPH1	NM_005219	exon6	c.A609G	p.E203E	.	.	185	6	110	0	.	91
DLGAP4	22839	bcgsc.ca	37	20	35060548	35060548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DLGAP4	NM_014902	exon2	c.T428C	p.V143A	.	.	159	9	107	1	.	94
DNAH17	8632	hgsc.bcm.edu;ucsc.edu	37	17	76472713	76472713	+	Nonsense_Mutation	SNP	C	C	A	rs116230343	byfrequency;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAH17	NM_173628	exon52	c.G8095T	p.E2699X	.	.	513	295	279	0	C|0.986;T|0.014	142
DNAH6	1768	bcgsc.ca	37	2	84822906	84822906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAH6	NM_001370	exon18	c.A2861G	p.K954R	.	.	27	4	33	0	.	69
DNAJC2	27000	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102957429	102957429	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAJC2	NM_014377	exon13	c.G1275A	p.E425E	.	.	232	88	280	0	.	158
DNTTIP2	30836	bcgsc.ca	37	1	94341250	94341250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_014597	exon3	c.A1757G	p.Q586R	.	.	109	5	90	0	.	.
DOCK8	81704	broad.mit.edu	37	9	334272	334272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK8	NM_203447	exon11	c.C1173G	p.C391W	.	.	118	5	86	0	.	517
DOCK9	23348	hgsc.bcm.edu;broad.mit.edu	37	13	99567709	99567709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK9	NM_001130049	exon8	c.769delA	p.S257fs	.	.	148	10	118	0	.	90
DOCK9	23348	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99515318	99515318	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK9	NM_001130049	exon32	c.G3537A	p.R1179R	.	.	117	43	134	0	.	90
DPY19L3	147991	bcgsc.ca	37	19	32944160	32944160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DPY19L3	NM_001172774	exon9	c.T965C	p.V322A	.	.	84	4	157	0	.	72
DTNA	1837	bcgsc.ca	37	18	32428290	32428290	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DTNA	NM_001390	exon13	c.A1296G	p.E432E	.	.	105	5	96	0	.	153
DUSP16	80824	bcgsc.ca	37	12	12674022	12674022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DUSP16	NM_030640	exon2	c.A11G	p.E4G	.	.	87	4	124	0	.	226
EDN3	1908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	57896179	57896179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EDN3	NM_207034	exon3	c.G473T	p.R158L	.	.	188	65	127	0	.	91
EFCAB6	64800	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43936088	43936088	+	Silent	SNP	G	G	A	rs144783076	byfrequency	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EFCAB6	NM_022785	exon28	c.C3798T	p.D1266D	.	.	145	53	93	0	G|1.000;A|0.000	97
EFNB2	1948	hgsc.bcm.edu;broad.mit.edu	37	13	107148141	107148141	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EFNB2	NM_004093	exon3	c.454delG	p.V152fs	.	.	121	10	106	0	.	91
EHBP1L1	254102	bcgsc.ca	37	11	65347712	65347712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EHBP1L1	NM_001099409	exon5	c.T473C	p.L158P	.	.	148	6	101	0	.	69
EML6	400954	bcgsc.ca	37	2	55054765	55054765	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001039753	exon5	c.T588C	p.D196D	.	.	115	5	102	0	.	.
ENTPD1-AS1	0	bcgsc.ca;mdanderson.org	37	10	97772065	97772065	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	.	.	.	.	.	.	25	11	26	0	.	.
ETAA1	54465	bcgsc.ca	37	2	67632364	67632364	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ETAA1	NM_019002	exon5	c.A2550G	p.T850T	.	.	135	7	126	1	.	156
EXOC4	60412	ucsc.edu;bcgsc.ca	37	7	133314861	133314861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EXOC4	NM_021807	exon10	c.G1481A	p.R494K	.	.	89	29	101	0	.	159
EYA1	2138	hgsc.bcm.edu;broad.mit.edu	37	8	72267072	72267072	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EYA1	NM_172059	exon2	c.69delC	p.P23fs	.	.	178	11	128	0	.	652
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	89652508	89652508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM13A	NM_014883	exon23	c.T2915G	p.F972C	.	.	25	8	39	0	.	70
FAM188B	84182	bcgsc.ca	37	7	30915248	30915248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM188B	NM_032222	exon15	c.T1948C	p.F650L	.	.	157	5	138	0	.	90
FAM196B	100131897	bcgsc.ca	37	5	169310215	169310215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001129891	exon2	c.A688G	p.S230G	.	.	254	7	141	0	.	.
FAM198A	729085	bcgsc.ca	37	3	43095103	43095103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM198A	NM_001129908	exon3	c.A1381G	p.N461D	.	.	220	9	163	2	.	68
FAM46D	169966	broad.mit.edu;bcgsc.ca	37	X	79699173	79699173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM46D	NM_001170574	exon5	c.C1135T	p.P379S	.	.	33	5	44	0	.	130
FAM47C	442444	hgsc.bcm.edu;bcgsc.ca	37	X	37026590	37026590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM47C	NM_001013736	exon1	c.G107A	p.R36K	.	.	313	218	285	0	.	111
FAM8A1	51439	hgsc.bcm.edu;mdanderson.org	37	6	17601073	17601073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM8A1	NM_016255	exon1	c.C433T	p.Q145X	.	.	70	28	44	0	.	90
FANCA	2175	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	89849430	89849430	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCA	NM_000135	exon16	c.G1551A	p.R517R	.	.	394	155	327	0	.	1130
FANCF	2188	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22646565	22646565	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCF	NM_022725	exon1	c.T792C	p.T264T	.	.	108	32	67	0	.	1083
FANCM	57697	bcgsc.ca	37	14	45653040	45653040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCM	NM_020937	exon17	c.T4450C	p.F1484L	.	.	78	4	149	0	.	569
FBN1	2200	bcgsc.ca	37	15	48738934	48738934	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FBN1	NM_000138	exon47	c.T5757C	p.G1919G	.	.	61	3	64	0	.	92
FBN2	2201	bcgsc.ca	37	5	127599211	127599211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FBN2	NM_001999	exon63	c.T8098C	p.S2700P	.	.	198	6	135	0	.	146
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu	37	19	40433636	40433636	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FCGBP	NM_003890	exon2	c.633delG	p.G211fs	.	.	155	10	161	0	.	98
FCHO1	23149	bcgsc.ca	37	19	17881358	17881358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FCHO1	NM_001161358	exon7	c.A461G	p.E154G	.	.	68	5	55	0	.	90
FCHO2	115548	bcgsc.ca	37	5	72351906	72351906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FCHO2	NM_138782	exon16	c.A1225G	p.K409E	.	.	250	10	253	0	.	23
FGD6	55785	hgsc.bcm.edu;broad.mit.edu	37	12	95603722	95603722	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FGD6	NM_018351	exon2	c.1338delT	p.F446fs	.	.	165	11	105	0	.	137
FHOD3	80206	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	18	34182680	34182680	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FHOD3	NM_025135	exon8	c.A762G	p.K254K	.	.	244	22	236	0	.	139
FILIP1L	11259	hgsc.bcm.edu	37	3	99567249	99567249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FILIP1L	NM_182909	exon5	c.C3271T	p.R1091X	.	.	506	28	555	0	.	45
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	1	152277969	152277969	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FLG	NM_002016	exon3	c.T9393G	p.D3131E	.	.	448	112	344	0	.	106
FNBP4	23360	bcgsc.ca	37	11	47758184	47758184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FNBP4	NM_015308	exon9	c.A1565G	p.E522G	.	.	83	4	90	0	.	91
FNIP1	96459	bcgsc.ca	37	5	131008195	131008195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FNIP1	NM_133372	exon14	c.C1942G	p.Q648E	.	.	80	4	62	0	.	92
FOXK2	3607	hgsc.bcm.edu;broad.mit.edu	37	17	80544026	80544026	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FOXK2	NM_004514	exon7	c.1526delC	p.A509fs	.	.	167	10	82	0	.	226
FREM2	341640	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	39343836	39343836	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FREM2	NM_207361	exon4	c.T5532C	p.D1844D	.	.	303	114	259	0	.	100
FSBP	100861412	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	95449096	95449096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001256141	exon1	c.A1G	p.M1V	.	.	189	50	146	0	.	.
G6PD	2539	bcgsc.ca	37	X	153761237	153761237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	G6PD	NM_000402	exon9	c.A1061G	p.D354G	.	.	110	6	102	0	.	135
GAB4	128954	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17489003	17489003	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GAB4	NM_001037814	exon1	c.T2A	p.M1K	.	.	109	34	95	0	.	91
GAREM	64762	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	29867200	29867200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_022751	exon4	c.G1360A	p.E454K	.	.	103	12	86	0	.	.
GAS8	2622	bcgsc.ca	37	16	90106894	90106894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GAS8	NM_001481	exon9	c.A1198G	p.T400A	.	.	64	4	42	0	.	227
GHR	2690	bcgsc.ca	37	5	42713594	42713594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GHR	NM_001242399	exon8	c.T869C	p.F290S	.	.	89	4	57	0	.	659
GIMAP4	55303	bcgsc.ca	37	7	150269812	150269812	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GIMAP4	NM_018326	exon3	c.A654G	p.E218E	.	.	135	7	92	0	.	91
GMEB2	26205	hgsc.bcm.edu;broad.mit.edu	37	20	62221981	62221981	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GMEB2	NM_012384	exon10	c.1054delC	p.L352fs	.	.	148	10	71	0	.	90
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	131022366	131022366	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GOLGA2	NM_004486	exon18	c.C1780T	p.L594L	.	.	40	8	33	0	.	91
GPAM	57678	hgsc.bcm.edu;bcgsc.ca	37	10	113920588	113920593	+	In_Frame_Del	DEL	CACAAA	CACAAA	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	CACAAA	CACAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPAM	NM_020918	exon16	c.1528_1533del	p.510_511del	.	.	85	12	94	0	.	92
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	113920573	113920585	+	Frame_Shift_Del	DEL	GACTTCCTCTTTC	GACTTCCTCTTTC	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	GACTTCCTCTTTC	GACTTCCTCTTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPAM	NM_020918	exon16	c.1536_1548del	p.512_516del	.	.	103	12	117	0	.	92
GPBP1L1	60313	bcgsc.ca	37	1	46120863	46120863	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPBP1L1	NM_021639	exon5	c.A189G	p.G63G	.	.	122	5	103	0	.	91
GPR112	139378	bcgsc.ca	37	X	135438310	135438310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR112	NM_153834	exon9	c.A6913G	p.M2305V	.	.	73	4	73	0	.	183
GPR125	166647	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	22425934	22425934	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR125	NM_145290	exon11	c.G1485A	p.L495L	.	.	220	88	247	0	.	91
GPR17	2840	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128408959	128408959	+	Missense_Mutation	SNP	G	G	A	rs151092449		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR17	NM_005291	exon3	c.G734A	p.R245H	.	.	183	60	137	0	G|1.000;A|0.000	514
GPR98	84059	broad.mit.edu	37	5	89943537	89943537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR98	NM_032119	exon17	c.C3245T	p.P1082L	.	.	85	3	76	0	.	103
GPRIN3	285513	bcgsc.ca	37	4	90170622	90170622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPRIN3	NM_198281	exon2	c.T640C	p.S214P	.	.	78	4	73	0	.	71
GRIA4	2893	bcgsc.ca	37	11	105623939	105623939	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GRIA4	NM_001077244	exon4	c.A480G	p.T160T	.	.	134	5	120	1	.	230
GTF2A1	2957	bcgsc.ca	37	14	81662585	81662585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GTF2A1	NM_015859	exon6	c.G479A	p.G160D	.	.	68	4	94	0	.	153
HCFC1	3054	hgsc.bcm.edu;broad.mit.edu	37	X	153217070	153217070	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HCFC1	NM_005334	exon21	c.5349delA	p.E1783fs	.	.	166	10	112	0	.	132
HDGFL1	154150	broad.mit.edu	37	6	22570062	22570062	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HDGFL1	NM_138574	exon1	c.C258G	p.P86P	.	.	21	5	36	0	.	90
HERC2	8924	bcgsc.ca	37	15	28427548	28427548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HERC2	NM_004667	exon57	c.A8936G	p.K2979R	.	.	55	4	57	0	.	234
HIP1	3092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75174427	75174427	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HIP1	NM_005338	exon26	c.C2619G	p.I873M	.	.	62	25	78	0	.	1085
HMCN1	83872	bcgsc.ca	37	1	186140547	186140547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HMCN1	NM_031935	exon101	c.A15653G	p.E5218G	.	.	133	5	86	0	.	113
HOOK2	29911	bcgsc.ca	37	19	12883615	12883615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HOOK2	NM_001100176	exon5	c.A367G	p.I123V	.	.	68	4	58	0	.	92
HRNR	388697	hgsc.bcm.edu	37	1	152189562	152189562	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HRNR	NM_001009931	exon3	c.4543delA	p.S1515fs	.	.	22	14	8	0	.	93
IGF1R	3480	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99467825	99467825	+	Silent	SNP	G	G	A	rs146023463		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IGF1R	NM_000875	exon13	c.G2694A	p.P898P	.	.	195	72	198	0	G|1.000;A|0.000	1490
IGF2BP2	10644	bcgsc.ca	37	3	185410534	185410534	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IGF2BP2	NM_001007225	exon5	c.A357G	p.E119E	.	.	113	5	118	0	.	226
IL18	3606	hgsc.bcm.edu;ucsc.edu	37	11	112020884	112020884	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL18	NM_001562	exon4	c.C137G	p.S46X	.	.	100	37	94	0	.	90
IL7R	3575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35867499	35867499	+	Missense_Mutation	SNP	A	A	G	rs199742437	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL7R	NM_002185	exon3	c.A313G	p.S105G	.	.	100	25	70	0	.	157
INADL	10207	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62321778	62321778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	INADL	NM_176877	exon18	c.G2189T	p.G730V	.	.	341	66	226	1	.	94
INTS7	25896	bcgsc.ca	37	1	212141249	212141249	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	INTS7	NM_015434	exon15	c.T2085C	p.A695A	.	.	71	4	45	0	.	90
IPO4	79711	bcgsc.ca	37	14	24654447	24654447	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IPO4	NM_024658	exon14	c.A1350G	p.G450G	.	.	145	5	193	0	.	226
IQGAP3	128239	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	156496391	156496391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IQGAP3	NM_178229	exon38	c.G4783T	p.D1595Y	.	.	78	20	71	0	.	96
ITGA10	8515	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	145534216	145534216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ITGA10	NM_003637	exon14	c.A1721G	p.E574G	.	.	191	50	154	0	.	231
ITGB2	3689	bcgsc.ca	37	21	46321525	46321525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ITGB2	NM_000211	exon6	c.T623C	p.L208P	.	.	130	6	185	1	.	717
ITPR2	3709	bcgsc.ca	37	12	26811016	26811016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ITPR2	NM_002223	exon17	c.T1934C	p.I645T	.	.	73	4	110	0	.	542
KANK1	23189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	713074	713074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KANK1	NM_001256876	exon7	c.T2308C	p.Y770H	.	.	106	40	109	0	.	517
KCNA3	3738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	111216834	111216834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KCNA3	NM_002232	exon1	c.598delG	p.D200fs	.	.	110	55	69	0	.	95
KCTD17	79734	bcgsc.ca	37	22	37449146	37449146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KCTD17	NM_024681	exon2	c.A217G	p.T73A	.	.	125	5	85	0	.	68
KDM4C	23081	bcgsc.ca	37	9	6986441	6986441	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KDM4C	NM_001146696	exon11	c.T1518C	p.A506A	.	.	151	5	141	0	.	228
KIAA0100	9703	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26961916	26961916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0100	NM_014680	exon16	c.A2689G	p.M897V	.	.	80	34	116	0	.	93
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu	37	8	126059515	126059515	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0196	NM_014846	exon20	c.2438delC	p.P813fs	.	.	143	10	126	0	.	92
KIAA0368	23392	bcgsc.ca	37	9	114213757	114213757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0368	NM_001080398	exon4	c.T635C	p.L212P	.	.	61	4	101	0	.	68
KIAA1467	57613	bcgsc.ca	37	12	13211448	13211448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA1467	NM_020853	exon3	c.T497C	p.L166P	.	.	213	6	342	0	.	92
KIF20B	9585	bcgsc.ca	37	10	91522426	91522426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIF20B	NM_016195	exon29	c.T4703C	p.V1568A	.	.	87	4	91	0	.	93
KIF20B	9585	bcgsc.ca	37	10	91522431	91522431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIF20B	NM_016195	exon29	c.A4708G	p.T1570A	.	.	91	4	95	0	.	93
KLHL32	114792	bcgsc.ca	37	6	97562241	97562241	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KLHL32	NM_052904	exon7	c.1210delG	p.G404fs	.	.	46	5	82	0	.	94
KLRC1	3821	bcgsc.ca	37	12	10603106	10603106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KLRC1	NM_213657	exon4	c.T260C	p.V87A	.	.	55	4	77	0	.	514
KRBA1	84626	bcgsc.ca	37	7	149427368	149427368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KRBA1	.	.	.	.	.	.	62	4	46	0	.	91
KRTAP26-1	388818	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	31691918	31691918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KRTAP26-1	NM_203405	exon1	c.C436A	p.Q146K	.	.	140	71	164	0	.	69
KTN1	3895	bcgsc.ca	37	14	56116533	56116533	+	Splice_Site	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KTN1	NM_001079521	exon22	c.2405+2T>-	.	.	.	26	3	71	0	.	1147
LAMA4	3910	bcgsc.ca	37	6	112441628	112441628	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LAMA4	NM_001105206	exon33	c.4523delT	p.I1508fs	.	.	45	4	89	0	.	140
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183095398	183095398	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LAMC1	NM_002293	exon16	c.2944+1G>T	.	.	.	284	131	140	0	.	252
LARP1B	55132	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	129028308	129028308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LARP1B	NM_032239	exon9	c.C828A	p.S276R	.	.	111	46	124	0	.	68
LILRA2	11027	bcgsc.ca	37	19	55086776	55086776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LILRA2	NM_001130917	exon5	c.G709T	p.G237W	.	.	503	16	493	6	.	91
LOC100873065	0	mdanderson.org	37	X	23020249	23020249	+	RNA	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	.	.	.	.	.	.	108	77	170	0	.	.
LOC642236	0	bcgsc.ca	37	9	68433493	68433493	+	RNA	SNP	C	C	T	rs75971144		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	.	.	.	.	.	.	149	8	199	6	C|0.500;T|0.500	.
LOXHD1	125336	bcgsc.ca	37	18	44190737	44190737	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_144612	exon7	c.759+2T>C	.	.	.	74	4	70	0	.	.
LRP12	29967	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	105503084	105503084	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP12	NM_013437	exon7	c.C2397T	p.A799A	.	.	160	37	131	0	.	90
LRP8	7804	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	53716471	53716471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP8	NM_004631	exon17	c.C2567A	p.T856N	.	.	209	111	204	0	.	90
MCAT	27349	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	43538972	43538972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MCAT	NM_014507	exon1	c.C383T	p.S128L	.	.	199	70	136	0	.	91
MDM1	56890	bcgsc.ca	37	12	68715156	68715156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MDM1	NM_017440	exon7	c.A976G	p.T326A	.	.	96	4	114	0	.	95
MDN1	23195	bcgsc.ca	37	6	90513153	90513153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MDN1	NM_014611	exon2	c.A223G	p.R75G	.	.	58	4	100	0	.	100
MED10	84246	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	6374436	6374436	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MED10	NM_032286	exon4	c.309+1G>A	.	.	.	266	59	185	0	.	91
MED1	5469	hgsc.bcm.edu;broad.mit.edu	37	17	37565247	37565247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MED1	NM_004774	exon17	c.3227delA	p.K1076fs	.	.	117	10	111	0	.	620
MINK1	50488	hgsc.bcm.edu;broad.mit.edu	37	17	4791017	4791017	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MINK1	NM_170663	exon12	c.1162delA	p.K388fs	.	.	145	11	95	0	.	943
MMEL1	79258	bcgsc.ca	37	1	2529736	2529736	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MMEL1	NM_033467	exon13	c.1182delC	p.T394fs	.	.	42	5	87	0	.	90
MOGAT3	346606	bcgsc.ca	37	7	100843755	100843755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MOGAT3	NM_178176	exon2	c.T151C	p.S51P	.	.	216	7	201	0	.	92
MRPS16	51021	ucsc.edu;bcgsc.ca	37	10	75010617	75010617	+	Missense_Mutation	SNP	T	T	C	rs146290698		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MRPS16	NM_016065	exon3	c.A407G	p.E136G	.	.	148	54	137	2	T|1.000;C|0.000	90
MTF1	4520	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	38281195	38281195	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MTF1	NM_005955	exon11	c.C1875T	p.I625I	.	.	239	110	173	0	.	92
MTOR	2475	bcgsc.ca	37	1	11301615	11301615	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MTOR	NM_004958	exon10	c.A1536G	p.G512G	.	.	134	5	172	0	.	1439
MUC5B	727897	bcgsc.ca;mdanderson.org	37	11	1276338	1276338	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_002458	exon36	c.G15732A	p.K5244K	.	.	197	61	153	1	.	.
MYO5A	4644	bcgsc.ca	37	15	52697484	52697484	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYO5A	NM_000259	exon9	c.T1053C	p.P351P	.	.	90	4	67	0	.	93
MYPOP	339344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46393962	46393962	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYPOP	NM_001012643	exon3	c.C1119T	p.L373L	.	.	75	25	64	0	.	90
NCOA7	135112	broad.mit.edu;bcgsc.ca	37	6	126203615	126203615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NCOA7	NM_001199619	exon8	c.T617C	p.V206A	.	.	50	4	57	0	.	227
NCOR2	9612	mdanderson.org	37	12	124824740	124824740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NCOR2	NM_006312	exon39	c.G5499C	p.Q1833H	.	.	18	3	10	0	.	229
NDST4	64579	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	115858629	115858629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NDST4	NM_022569	exon5	c.G1252T	p.A418S	.	.	270	97	255	0	.	94
NEGR1	257194	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	72400944	72400944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NEGR1	NM_173808	exon2	c.G227A	p.S76N	.	.	103	25	72	0	.	92
NOX5	79400	ucsc.edu	37	15	69349057	69349057	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NOX5	.	.	.	.	.	.	81	25	61	0	.	136
NRAP	4892	bcgsc.ca	37	10	115381748	115381748	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NRAP	NM_001261463	exon24	c.C2649T	p.A883A	.	.	328	8	269	2	.	522
NUMBL	9253	broad.mit.edu;bcgsc.ca	37	19	41183260	41183260	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NUMBL	NM_004756	exon7	c.607delG	p.E203fs	.	.	70	7	70	0	.	637
OR1B1	347169	broad.mit.edu	37	9	125391780	125391780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR1B1	NM_001004450	exon1	c.C35G	p.P12R	.	.	63	5	70	1	.	68
OR2M5	127059	ucsc.edu;bcgsc.ca	37	1	248308863	248308863	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR2M5	NM_001004690	exon1	c.C414A	p.P138P	.	.	512	237	393	2	.	71
OR4K2	390431	broad.mit.edu	37	14	20345276	20345276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR4K2	NM_001005501	exon1	c.C850G	p.P284A	.	.	27	5	52	0	.	72
OR5F1	338674	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55761365	55761365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR5F1	NM_003697	exon1	c.C737T	p.T246I	.	.	85	34	92	0	.	70
OR5T2	219464	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56000212	56000212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR5T2	NM_001004746	exon1	c.A450T	p.E150D	.	.	208	77	177	0	.	70
OR6S1	341799	broad.mit.edu;bcgsc.ca	37	14	21109390	21109390	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR6S1	NM_001001968	exon1	c.461delG	p.G154fs	.	.	79	8	109	0	.	70
OR8G5	219865	hgsc.bcm.edu	37	11	124134838	124134838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001005198	exon1	c.116delA	p.E39fs	.	.	180	11	166	0	.	.
PACSIN2	11252	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	43284655	43284655	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PACSIN2	NM_007229	exon5	c.T603G	p.V201V	.	.	236	103	202	0	.	68
PAQR7	164091	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	26189417	26189417	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PAQR7	NM_178422	exon2	c.A914C	p.E305A	.	.	248	149	306	0	.	71
PCDHA11	56138	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140249054	140249054	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PCDHA11	NM_018902	exon1	c.G366A	p.E122E	.	.	150	78	158	0	.	67
PCMTD1	115294	bcgsc.ca	37	8	52733127	52733127	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PCMTD1	NM_052937	exon6	c.C858T	p.N286N	.	.	289	17	314	6	.	68
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu	37	5	32090198	32090198	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PDZD2	NM_178140	exon19	c.6644delC	p.T2215fs	.	.	166	10	91	0	.	563
PHIP	55023	bcgsc.ca	37	6	79672950	79672950	+	Silent	SNP	T	T	C	rs186534230	by1000genomes	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PHIP	NM_017934	exon30	c.A3399G	p.L1133L	.	.	134	5	103	0	T|0.999;C|0.000	579
PI4KAP2	375133	broad.mit.edu	37	22	21830305	21830305	+	RNA	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PI4KAP2	.	.	.	.	.	.	64	4	44	1	.	68
PIK3C2G	5288	bcgsc.ca	37	12	18641483	18641483	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PIK3C2G	NM_004570	exon18	c.2482delT	p.F828fs	.	.	48	5	83	0	.	1312
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	PIK3CA,bladder,carcinoma,0	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	.	.	127	47	123	0	.	27752
PITPNA	5306	hgsc.bcm.edu;broad.mit.edu	37	17	1444911	1444911	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PITPNA	NM_006224	exon6	c.321delT	p.F107fs	.	.	180	11	146	0	.	227
PLA2G4D	283748	bcgsc.ca	37	15	42378538	42378538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLA2G4D	NM_178034	exon4	c.T260C	p.V87A	.	.	37	5	63	1	.	136
PLB1	151056	bcgsc.ca	37	2	28855824	28855824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLB1	NM_153021	exon56	c.A4016G	p.D1339G	.	.	144	7	127	0	.	141
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151144808	151144808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLEKHG1	NM_001029884	exon15	c.A1466G	p.Q489R	.	.	31	15	54	0	.	92
POGLUT1	56983	hgsc.bcm.edu;broad.mit.edu	37	3	119187934	119187934	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POGLUT1	NM_152305	exon1	c.66delG	p.Q22fs	.	.	178	11	108	0	.	91
POLA1	5422	bcgsc.ca	37	X	24741307	24741307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POLA1	NM_016937	exon11	c.T1105C	p.S369P	.	.	157	5	144	0	.	229
POLE	5426	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	133219191	133219191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POLE	NM_006231	exon37	c.A4853G	p.N1618S	.	.	141	39	77	0	.	233
PPAPDC3	84814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	134183331	134183331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPAPDC3	NM_032728	exon2	c.C473T	p.T158M	.	.	31	8	12	0	.	153
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu	37	1	204378837	204378837	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPP1R15B	NM_032833	exon1	c.1703delC	p.P568fs	.	.	164	10	117	0	.	652
PPP2R2B	5521	bcgsc.ca	37	5	146077571	146077571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPP2R2B	NM_181675	exon4	c.A623G	p.N208S	.	.	263	7	179	0	.	659
PPP2R3B	28227	bcgsc.ca	37	X	299593	299593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPP2R3B	NM_013239	exon11	c.G1390C	p.A464P	.	.	451	13	368	5	.	136
PPP2R5B	5526	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64700298	64700298	+	Missense_Mutation	SNP	A	A	G	rs75667682	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPP2R5B	NM_006244	exon12	c.A1178G	p.N393S	.	.	132	42	118	1	.	660
PRDX4	10549	broad.mit.edu;bcgsc.ca	37	X	23689646	23689646	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRDX4	NM_006406	exon2	c.242delT	p.I81fs	.	.	70	7	101	0	.	131
PRKRA	8575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179300978	179300978	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRKRA	NM_003690	exon7	c.678delC	p.I226fs	.	.	130	17	150	0	.	116
PRMT3	10196	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20409581	20409581	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRMT3	NM_005788	exon2	c.G45T	p.V15V	.	.	213	76	186	0	.	90
PRUNE2	158471	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	79322807	79322807	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRUNE2	NM_015225	exon8	c.G4383A	p.K1461K	.	.	163	45	142	0	.	157
PSMB10	5699	hgsc.bcm.edu;broad.mit.edu	37	16	67970637	67970637	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PSMB10	NM_002801	exon1	c.16delC	p.L6fs	.	.	161	10	121	0	.	90
PTPRJ	5795	bcgsc.ca	37	11	48188892	48188892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PTPRJ	NM_002843	exon25	c.A3992G	p.K1331R	.	.	140	5	111	0	.	541
PYHIN1	149628	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158908887	158908887	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PYHIN1	NM_152501	exon4	c.T429A	p.S143S	.	.	149	50	130	0	.	94
RAB32	10981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146875606	146875606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAB32	NM_006834	exon3	c.A543G	p.I181M	.	.	63	38	86	0	.	651
RAC2	5880	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37622734	37622734	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAC2	NM_002872	exon6	c.G558A	p.K186K	.	.	70	24	55	0	.	723
RBBP7	5931	bcgsc.ca	37	X	16876872	16876872	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBBP7	NM_001198719	exon4	c.T540C	p.P180P	.	.	86	4	81	0	.	227
RBM25	58517	bcgsc.ca	37	14	73566448	73566448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBM25	NM_021239	exon9	c.A857G	p.D286G	.	.	76	4	103	0	.	91
RBM26	64062	bcgsc.ca	37	13	79908567	79908567	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBM26	NM_022118	exon20	c.2653-2A>G	.	.	.	201	6	174	0	.	91
RBMXL2	27288	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7111267	7111267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBMXL2	NM_014469	exon1	c.G916T	p.G306C	.	.	109	48	87	0	.	68
REXO4	57109	hgsc.bcm.edu;broad.mit.edu	37	9	136277557	136277557	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	REXO4	NM_020385	exon4	c.772delG	p.E258fs	.	.	152	10	114	0	.	90
RGS7	6000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	240978079	240978079	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RGS7	NM_002924	exon13	c.784-2A>G	.	.	.	85	24	47	0	.	232
RLTPR	146206	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67683061	67683061	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RLTPR	NM_001013838	exon18	c.C1674T	p.F558F	.	.	143	50	132	0	.	67
RNF139	11236	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125498418	125498418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RNF139	NM_007218	exon2	c.G528T	p.E176D	.	.	192	104	121	0	.	226
RNF219	79596	bcgsc.ca	37	13	79213208	79213208	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RNF219	NM_024546	exon5	c.301-2A>G	.	.	.	89	4	111	0	.	135
RNF39	80352	bcgsc.ca	37	6	30041017	30041017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RNF39	NM_025236	exon3	c.T599C	p.V200A	.	.	128	7	129	0	.	226
RPS6KA1	6195	bcgsc.ca	37	1	26878156	26878156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RPS6KA1	NM_001006665	exon5	c.T437C	p.L146P	.	.	168	6	211	0	.	510
RRH	10692	bcgsc.ca	37	4	110765328	110765328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RRH	NM_006583	exon7	c.A989G	p.N330S	.	.	94	5	91	1	.	91
RSPH6A	81492	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	46305378	46305378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RSPH6A	NM_030785	exon4	c.G1798T	p.E600X	.	.	128	45	108	0	.	91
RTF1	23168	bcgsc.ca	37	15	41730533	41730533	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RTF1	NM_015138	exon2	c.213delG	p.L71fs	.	.	57	6	70	0	.	92
SALL1	6299	bcgsc.ca	37	16	51173561	51173561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SALL1	NM_002968	exon2	c.C2572T	p.L858F	.	.	195	7	153	0	.	98
SAMD5	389432	bcgsc.ca	37	6	147830449	147830449	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SAMD5	NM_001030060	exon1	c.385delA	p.K129fs	.	.	36	5	70	0	.	68
SCAF11	9169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46357973	46357973	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCAF11	.	.	.	.	.	.	23	13	19	0	.	93
SCUBE2	57758	bcgsc.ca	37	11	9052315	9052315	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCUBE2	NM_020974	exon17	c.T2160C	p.C720C	.	.	58	4	64	0	.	92
SEMA5B	54437	bcgsc.ca	37	3	122642473	122642473	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SEMA5B	NM_001256347	exon10	c.C1425T	p.P475P	.	.	93	1	82	0	.	157
SGPL1	8879	bcgsc.ca	37	10	72614516	72614516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SGPL1	NM_003901	exon5	c.T313C	p.F105L	.	.	103	4	99	0	.	226
SIL1	64374	hgsc.bcm.edu;broad.mit.edu	37	5	138362514	138362514	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SIL1	NM_001037633	exon7	c.621delT	p.F207fs	.	.	196	13	108	0	.	90
SLC22A20	440044	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64981537	64981537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC22A20	NM_001004326	exon1	c.C194T	p.S65L	.	.	63	20	65	0	.	23
SLC25A38	54977	bcgsc.ca	37	3	39431943	39431943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC25A38	NM_017875	exon3	c.T221C	p.L74P	.	.	260	7	262	0	.	90
SLC4A10	57282	bcgsc.ca	37	2	162821621	162821621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC4A10	NM_001178015	exon23	c.A3097G	p.S1033G	.	.	88	4	86	0	.	229
SLC8A1	6546	ucsc.edu;bcgsc.ca	37	2	40366656	40366656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC8A1	NM_021097	exon9	c.G2430T	p.M810I	.	.	178	60	174	0	.	93
SLITRK4	139065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142717685	142717685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLITRK4	NM_001184750	exon2	c.A1240G	p.T414A	.	.	109	80	117	0	.	193
SMC2	10592	bcgsc.ca	37	9	106896730	106896730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMC2	NM_006444	exon23	c.T3143C	p.L1048P	.	.	118	5	98	0	.	210
SMC6	79677	bcgsc.ca	37	2	17898050	17898050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMC6	NM_001142286	exon14	c.A1304G	p.Q435R	.	.	142	6	192	0	.	292
SMCHD1	23347	bcgsc.ca	37	18	2728514	2728514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMCHD1	NM_015295	exon23	c.A2833G	p.T945A	.	.	65	4	76	0	.	46
SMPD1	6609	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6412065	6412065	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMPD1	NM_000543	exon1	c.G237A	p.R79R	.	.	90	23	91	0	.	90
SNX13	23161	bcgsc.ca	37	7	17932994	17932994	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SNX13	NM_015132	exon3	c.A189G	p.E63E	.	.	230	6	216	0	.	650
SOX3	6658	bcgsc.ca	37	X	139586972	139586972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SOX3	NM_005634	exon1	c.A254G	p.K85R	.	.	26	4	28	0	.	1083
SPATA31A3	727830	bcgsc.ca	37	9	40705580	40705580	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001083124	exon4	c.A3237T	p.R1079S	.	.	72	35	110	0	.	.
SPATA31E1	286234	bcgsc.ca	37	9	90501957	90501957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_178828	exon4	c.T2555C	p.L852P	.	.	111	7	67	0	.	.
SPTBN1	6711	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	54850714	54850714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SPTBN1	NM_003128	exon10	c.T1163G	p.L388R	.	.	128	57	138	0	.	140
STAG2	10735	hgsc.bcm.edu;broad.mit.edu	37	X	123224569	123224569	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STAG2	NM_001042749	exon31	c.3422delT	p.V1141fs	.	.	129	10	121	0	.	134
STXBP5L	9515	bcgsc.ca	37	3	120976155	120976155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STXBP5L	NM_014980	exon17	c.A1807G	p.T603A	.	.	91	4	94	0	.	77
SYCE1L	100130958	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77245136	77245136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001129979	exon7	c.A386G	p.D129G	.	.	211	84	189	0	.	.
SYNRG	11276	bcgsc.ca	37	17	35902230	35902230	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SYNRG	NM_007247	exon15	c.A3046C	p.T1016P	.	.	118	5	98	1	.	92
SYT9	143425	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7324549	7324549	+	Missense_Mutation	SNP	C	C	T	rs200034628		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SYT9	NM_175733	exon2	c.C425T	p.T142M	.	.	65	23	70	0	C|0.999;T|0.000	155
TANC1	85461	bcgsc.ca	37	2	160087353	160087353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TANC1	NM_033394	exon27	c.A5416G	p.S1806G	.	.	161	5	147	0	.	92
TBC1D14	57533	broad.mit.edu	37	4	6996012	6996012	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TBC1D14	NM_001113361	exon4	c.C945T	p.I315I	.	.	122	4	101	0	.	92
TBX22	50945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79282219	79282219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TBX22	NM_016954	exon5	c.T650C	p.M217T	.	.	63	44	71	0	.	628
TENM2	57451	hgsc.bcm.edu;broad.mit.edu	37	5	167675302	167675302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001122679	exon27	c.7331delC	p.A2444fs	.	.	122	10	84	0	.	.
TEX14	56155	hgsc.bcm.edu;bcgsc.ca	37	17	56692692	56692692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TEX14	NM_001201457	exon8	c.G800A	p.G267E	.	.	124	5	93	0	.	810
THAP1	55145	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42693397	42693397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	THAP1	NM_018105	exon3	c.G350T	p.G117V	.	.	124	65	135	0	.	90
THSD7A	221981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11446083	11446083	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	THSD7A	NM_015204	exon21	c.G4081C	p.G1361R	.	.	242	84	193	0	.	71
TIAM1	7074	bcgsc.ca	37	21	32585778	32585778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TIAM1	NM_003253	exon11	c.A2153G	p.E718G	.	.	93	4	168	0	.	724
TIGD7	91151	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	3349414	3349414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TIGD7	NM_033208	exon2	c.A1201G	p.N401D	.	.	220	81	243	0	.	90
TLL1	7092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	167020635	167020635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TLL1	NM_012464	exon20	c.C2863G	p.L955V	.	.	290	100	269	0	.	158
TMEM132B	114795	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	126138497	126138497	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TMEM132B	NM_052907	exon9	c.A2478G	p.R826R	.	.	176	57	92	0	.	185
TMEM52B	120939	bcgsc.ca	37	12	10342627	10342627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_153022	exon4	c.T380C	p.F127S	.	.	99	4	112	0	.	.
TMEM72	643236	bcgsc.ca	37	10	45429185	45429185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TMEM72	NM_001123376	exon4	c.T310C	p.F104L	.	.	142	6	109	0	.	90
TMF1	7110	bcgsc.ca	37	3	69097016	69097016	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TMF1	NM_007114	exon2	c.A840G	p.T280T	.	.	103	4	80	0	.	90
TNFSF14	8740	bcgsc.ca	37	19	6665022	6665022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNFSF14	NM_003807	exon5	c.A638G	p.E213G	.	.	135	9	152	1	.	228
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57081166	57081166	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNKS1BP1	NM_033396	exon5	c.996delC	p.P332fs	.	.	208	13	194	0	.	91
TNKS2	80351	bcgsc.ca	37	10	93609348	93609348	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNKS2	NM_025235	exon20	c.A2691G	p.E897E	.	.	71	4	104	0	.	541
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24815534	24815534	+	Missense_Mutation	SNP	A	A	G	rs146427035	byfrequency	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNRC6A	NM_014494	exon12	c.A3731G	p.H1244R	.	.	54	22	88	0	A|0.995;G|0.005	92
TNRC6B	23112	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40708594	40708594	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNRC6B	NM_001162501	exon18	c.G4521T	p.G1507G	.	.	116	46	123	0	.	22
TNS3	64759	bcgsc.ca	37	7	47323307	47323307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNS3	NM_022748	exon28	c.A4085G	p.D1362G	.	.	112	6	52	0	.	94
TOP2A	7153	bcgsc.ca	37	17	38557116	38557116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TOP2A	NM_001067	exon21	c.G2650A	p.E884K	.	.	108	6	101	0	.	655
TOP2A	7153	bcgsc.ca	37	17	38562729	38562729	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TOP2A	NM_001067	exon16	c.A1860G	p.T620T	.	.	147	5	146	0	.	655
TPCN2	219931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68835002	68835002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TPCN2	NM_139075	exon8	c.C758G	p.T253S	.	.	56	10	46	0	.	90
TPTE2	93492	bcgsc.ca	37	13	20000631	20000631	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TPTE2	NM_199254	exon19	c.A1329G	p.K443K	.	.	79	4	101	0	.	92
TRIM33	51592	bcgsc.ca	37	1	114973529	114973563	+	In_Frame_Del	DEL	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRIM33	NM_033020	exon6	c.1041_1046del	p.347_349del	.	.	153	6	173	0	.	1351
TRIM33	51592	hgsc.bcm.edu	37	1	114973529	114973530	+	Nonsense_Mutation	INS	-	-	CAAC	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRIM33	NM_033020	exon6	c.1046_1047insGTTG	p.K349_E350delinsSX	.	.	148	11	172	0	.	1351
TRIP11	9321	bcgsc.ca	37	14	92466343	92466343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRIP11	NM_004239	exon12	c.A4667G	p.K1556R	.	.	95	4	179	0	.	1400
TSPYL2	64061	bcgsc.ca	37	X	53115071	53115071	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TSPYL2	NM_022117	exon6	c.T1497C	p.A499A	.	.	76	4	78	0	.	130
TTC17	55761	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	43411338	43411338	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TTC17	NM_018259	exon3	c.G386C	p.G129A	.	.	203	58	219	0	.	95
TTI2	80185	bcgsc.ca	37	8	33358008	33358008	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001265581	exon7	c.A1260G	p.R420R	.	.	92	5	70	0	.	.
TUBA3C	7278	bcgsc.ca	37	13	19751695	19751695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TUBA3C	NM_006001	exon4	c.G428C	p.G143A	.	.	439	9	366	4	.	95
TUBGCP5	114791	bcgsc.ca	37	15	22855288	22855288	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TUBGCP5	NM_052903	exon13	c.A1749G	p.G583G	.	.	71	4	64	1	.	91
UBN2	254048	bcgsc.ca	37	7	138944069	138944069	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UBN2	NM_173569	exon5	c.A858G	p.E286E	.	.	87	5	103	0	.	70
ULK2	9706	hgsc.bcm.edu	37	17	19729494	19729494	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ULK2	NM_001142610	exon11	c.T793G	p.F265V	.	.	238	6	237	0	.	334
UNC13C	440279	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	54590036	54590036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UNC13C	NM_001080534	exon10	c.C4016A	p.S1339Y	.	.	307	104	341	0	.	51
USP54	159195	hgsc.bcm.edu;broad.mit.edu	37	10	75264616	75264616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	USP54	NM_152586	exon20	c.4303delC	p.H1435fs	.	.	166	10	134	0	.	721
UVSSA	57654	bcgsc.ca	37	4	1374696	1374696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_020894	exon12	c.G1781A	p.R594Q	.	.	552	14	410	3	.	.
VAMP2	6844	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	8064968	8064968	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	VAMP2	NM_014232	exon3	c.C240T	p.S80S	.	.	131	13	140	0	.	90
VN1R5	317705	bcgsc.ca	37	1	247419510	247419510	+	RNA	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	.	.	.	.	.	.	273	7	206	1	.	.
VSTM4	196740	hgsc.bcm.edu	37	10	50315774	50315774	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	VSTM4,NS,carcinoma,0	VSTM4	NM_144984	exon2	c.322delG	p.A108fs	.	.	149	10	116	0	.	154
WDR11	55717	bcgsc.ca	37	10	122662722	122662722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	WDR11	NM_018117	exon23	c.T2909C	p.L970P	.	.	79	4	75	0	.	226
WDR87	83889	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	38378513	38378513	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_031951	exon6	c.A5681C	p.K1894T	.	.	209	83	207	0	.	.
XIAP	331	bcgsc.ca	37	X	123019618	123019618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	XIAP	NM_001204401	exon2	c.T106C	p.F36L	.	.	62	4	55	0	.	1084
XIRP2	129446	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104144	168104144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	XIRP2	NM_152381	exon9	c.G6242A	p.R2081K	.	.	158	71	155	0	.	104
XRCC5	7520	bcgsc.ca	37	2	217012902	217012902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	XRCC5	NM_021141	exon14	c.A1573G	p.K525E	.	.	200	6	204	1	.	970
ZBBX	79740	bcgsc.ca	37	3	167051727	167051727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZBBX	NM_024687	exon10	c.T575C	p.F192S	.	.	117	5	113	0	.	92
ZFP28	140612	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57066068	57066068	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP28	NM_020828	exon8	c.C1914G	p.I638M	.	.	110	31	77	0	.	91
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39899237	39899239	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP36	NM_003407	exon2	c.897_899del	p.299_300del	.	.	98	21	84	0	.	227
ZFR	51663	hgsc.bcm.edu	37	5	32400266	32400266	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFR	NM_016107	exon9	c.1559delT	p.I520fs	.	.	164	10	113	0	.	90
ZNF24	7572	hgsc.bcm.edu;ucsc.edu	37	18	32920512	32920512	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF24	NM_006965	exon2	c.G103T	p.E35X	.	.	59	20	45	0	.	90
ZNF24	7572	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	32920511	32920511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF24	NM_006965	exon2	c.A104G	p.E35G	.	.	61	22	46	0	.	90
ZNF322	79692	hgsc.bcm.edu;bcgsc.ca	37	6	26638586	26638586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001242797	exon5	c.A196G	p.T66A	.	.	397	92	396	0	.	.
ZNF354B	117608	bcgsc.ca	37	5	178311073	178311073	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF354B	NM_058230	exon5	c.T1620C	p.H540H	.	.	172	6	138	0	.	92
ZNF37A	7587	bcgsc.ca	37	10	38406961	38406961	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF37A	NM_003421	exon7	c.A882G	p.T294T	.	.	23	4	37	0	.	90
ZNF394	84124	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	99091412	99091412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF394	NM_032164	exon3	c.A1426G	p.K476E	.	.	222	69	190	0	.	90
ZNF395	55893	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	28210089	28210089	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF395	NM_018660	exon7	c.920+1G>A	.	.	.	108	30	52	0	.	90
ZNF559	84527	broad.mit.edu;bcgsc.ca	37	19	9453316	9453316	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF559	NM_001202406	exon6	c.1381delA	p.K461fs	.	.	84	9	69	0	.	91
ZNF627	199692	bcgsc.ca	37	19	11727549	11727549	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF627	NM_145295	exon4	c.T231C	p.G77G	.	.	72	4	51	0	.	91
ZNF682	91120	bcgsc.ca	37	19	20116962	20116962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF682	NM_033196	exon4	c.T1349C	p.V450A	.	.	63	5	53	0	.	92
ZNF761	388561	bcgsc.ca	37	19	53958615	53958615	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF761	NM_001008401	exon7	c.854delT	p.L285fs	.	.	39	4	66	0	.	91
ZNF780B	163131	bcgsc.ca	37	19	40541735	40541735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF780B	NM_001005851	exon5	c.T1031C	p.L344P	.	.	86	4	92	0	.	47
ZNF804A	91752	bcgsc.ca	37	2	185802825	185802825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF804A	NM_194250	exon4	c.A2702G	p.E901G	.	.	72	4	86	0	.	163
ZNF808	388558	bcgsc.ca	37	19	53057074	53057074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001039886	exon5	c.T905C	p.L302P	.	.	64	4	98	0	.	.
ZNF808	388558	bcgsc.ca	37	19	53058141	53058141	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001039886	exon5	c.1972delA	p.K658fs	.	.	34	4	75	0	.	.
ZNF808	388558	bcgsc.ca	37	19	53058144	53058144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001039886	exon5	c.A1975G	p.T659A	.	.	35	4	73	0	.	.
