Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2M	2	bcgsc.ca	37	12	9260187	9260187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	A2M	NM_000014	exon8	c.A812G	p.K271R	.	.	67	4	69	0	.	515
A2ML1	144568	bcgsc.ca	37	12	9013743	9013743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	A2ML1	NM_144670	exon28	c.A3352G	p.S1118G	.	.	187	7	184	3	.	93
AASS	10157	bcgsc.ca	37	7	121738856	121738856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	AASS	NM_005763	exon14	c.A1471G	p.I491V	.	.	92	4	76	0	.	92
ABCA1	19	bcgsc.ca	37	9	107645430	107645430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ABCA1	NM_005502	exon5	c.G311C	p.R104P	.	.	100	30	139	7	.	1016
ABCC5	10057	bcgsc.ca	37	3	183696332	183696332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ABCC5	NM_005688	exon9	c.T1255C	p.S419P	.	.	63	4	60	0	.	137
ADAM12	8038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127760154	127760154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ADAM12	NM_021641	exon12	c.G1224A	p.M408I	.	.	176	88	180	1	.	716
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175896738	175896738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ADAM29	NM_001130703	exon4	c.A62C	p.Q21P	.	.	142	55	138	0	.	729
ADAM33	80332	broad.mit.edu	37	20	3652947	3652947	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ADAM33	NM_025220	exon14	c.G1431A	p.Q477Q	.	.	154	5	153	0	.	291
AHI1	54806	bcgsc.ca	37	6	135763790	135763790	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	AHI1	NM_001134832	exon13	c.T1842C	p.C614C	.	.	164	6	161	0	.	227
AHI1	54806	bcgsc.ca	37	6	135784393	135784393	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	AHI1	NM_001134832	exon7	c.T801C	p.S267S	.	.	68	4	50	0	.	227
ALG1	56052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5127503	5127503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ALG1	NM_019109	exon5	c.G597A	p.M199I	.	.	99	35	104	0	.	92
ANK3	288	broad.mit.edu;bcgsc.ca	37	10	61834027	61834027	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ANK3	NM_020987	exon37	c.A6612G	p.E2204E	.	.	138	5	134	1	.	107
ARC	23237	bcgsc.ca	37	8	143694941	143694941	+	Missense_Mutation	SNP	A	A	C	rs201562490	byfrequency	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ARC	NM_015193	exon1	c.T692G	p.V231G	.	.	56	22	61	5	A|0.977;C|0.023	135
ARHGEF12	23365	bcgsc.ca	37	11	120291546	120291546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ARHGEF12	NM_015313	exon5	c.A284G	p.Q95R	.	.	66	4	61	0	.	661
ASB6	140459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132400301	132400301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ASB6	NM_017873	exon6	c.A1034C	p.N345T	.	.	67	31	53	0	.	226
ASCC3	10973	bcgsc.ca	37	6	101253676	101253676	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ASCC3	NM_006828	exon5	c.T882C	p.F294F	.	.	73	4	60	0	.	96
ATAD3C	219293	bcgsc.ca	37	1	1390901	1390901	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001039211	exon5	c.438+2T>C	.	.	.	138	6	138	0	.	.
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	63982027	63982027	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ATXN7	NM_000333	exon12	c.G2529A	p.S843S	.	.	235	11	262	0	.	90
BAI3	577	bcgsc.ca	37	6	70049280	70049280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	BAI3	NM_001704	exon26	c.T3343C	p.S1115P	.	.	200	7	243	0	.	1148
BAZ1A	11177	broad.mit.edu;bcgsc.ca	37	14	35231375	35231375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	BAZ1A	NM_013448	exon24	c.A3831C	p.K1277N	.	.	211	11	181	1	.	291
BOC	91653	bcgsc.ca	37	3	112993397	112993397	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	BOC	NM_033254	exon9	c.T1410C	p.A470A	.	.	166	34	173	13	.	157
BPTF	2186	broad.mit.edu	37	17	65942160	65942160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	BPTF	NM_182641	exon21	c.T7336C	p.S2446P	.	.	167	4	144	0	.	94
BTBD9	114781	bcgsc.ca	37	6	38224219	38224219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	BTBD9	NM_052893	exon10	c.A1528G	p.T510A	.	.	83	4	63	0	.	226
C20orf194	25943	bcgsc.ca	37	20	3285098	3285098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	C20orf194	NM_001009984	exon21	c.T1771C	p.F591L	.	.	93	4	97	0	.	68
C20orf196	149840	broad.mit.edu	37	20	5843849	5843849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	C20orf196	NM_152504	exon3	c.T358C	p.S120P	.	.	151	5	173	0	.	90
C5	727	broad.mit.edu;bcgsc.ca	37	9	123785770	123785770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	C5	NM_001735	exon10	c.C1028T	p.P343L	.	.	216	8	186	0	.	92
C5orf42	65250	bcgsc.ca	37	5	37183785	37183785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	C5orf42	NM_023073	exon26	c.A4498G	p.M1500V	.	.	101	5	105	0	.	94
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1251935	1251935	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CACNA1H	NM_021098	exon9	c.G1485A	p.V495V	.	.	40	20	45	0	.	67
CALR3	125972	bcgsc.ca	37	19	16593352	16593352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CALR3	NM_145046	exon7	c.T827C	p.L276P	.	.	142	6	141	0	.	90
CCDC112	153733	bcgsc.ca	37	5	114611303	114611303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CCDC112	NM_001040440	exon6	c.A528G	p.I176M	.	.	68	4	76	0	.	90
CCDC141	285025	bcgsc.ca	37	2	179770219	179770219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CCDC141	NM_173648	exon8	c.G1102A	p.V368I	.	.	86	4	75	0	.	78
CCR10	2826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40831634	40831634	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CCR10	NM_016602	exon2	c.C1026T	p.R342R	.	.	43	20	31	0	.	522
CD2AP	23607	bcgsc.ca	37	6	47501459	47501459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CD2AP	NM_012120	exon3	c.A287G	p.Q96R	.	.	57	4	60	0	.	92
CEP120	153241	bcgsc.ca	37	5	122682349	122682349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CEP120	NM_153223	exon21	c.A2825G	p.D942G	.	.	147	5	122	0	.	91
CEP95	90799	bcgsc.ca	37	17	62529287	62529287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CEP95	NM_138363	exon16	c.A1895G	p.E632G	.	.	136	5	126	0	.	23
CEP95	90799	broad.mit.edu	37	17	62530838	62530838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CEP95	NM_138363	exon17	c.A2053G	p.R685G	.	.	139	6	103	0	.	23
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61990961	61990961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CHRNA4	NM_000744	exon2	c.C167T	p.A56V	.	.	109	37	110	0	.	91
CIT	11113	bcgsc.ca	37	12	120295350	120295350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CIT	NM_001206999	exon4	c.A391G	p.K131E	.	.	128	6	127	0	.	399
CLEC12A	160364	bcgsc.ca	37	12	10132110	10132110	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CLEC12A	NM_001207010	exon4	c.T396C	p.Y132Y	.	.	101	4	101	0	.	91
CLNK	116449	bcgsc.ca	37	4	10527534	10527534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CLNK	NM_052964	exon14	c.A662G	p.Q221R	.	.	78	4	84	0	.	23
COL4A4	1286	bcgsc.ca	37	2	227946899	227946899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	COL4A4	NM_000092	exon23	c.A1628G	p.K543R	.	.	73	6	66	0	.	142
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9468	9468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	ENST00000362079	exon1	c.A262G	p.T88A	.	.	157	6	52	0	.	.
CPA2	1358	broad.mit.edu	37	7	129914989	129914989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CPA2	NM_001869	exon6	c.T487C	p.F163L	.	.	202	6	108	0	.	91
CPAMD8	27151	hgsc.bcm.edu;bcgsc.ca	37	19	17115180	17115180	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CPAMD8	NM_015692	exon8	c.C717T	p.S239S	.	.	99	27	103	0	.	141
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17115174	17115174	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CPAMD8	NM_015692	exon8	c.723delC	p.P241fs	.	.	106	26	115	0	.	141
CPED1	79974	broad.mit.edu;bcgsc.ca	37	7	120737753	120737753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001105533	exon5	c.A617G	p.E206G	.	.	192	6	135	0	.	.
CPS1	1373	bcgsc.ca	37	2	211460245	211460245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CPS1	NM_001122633	exon14	c.T1316C	p.L439P	.	.	145	5	100	0	.	162
CROCCP3	114819	broad.mit.edu	37	1	16812970	16812970	+	RNA	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	.	.	.	.	.	.	51	8	77	0	.	.
CROCCP3	114819	broad.mit.edu	37	1	16812982	16812982	+	RNA	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	.	.	.	.	.	.	52	8	75	0	.	.
CSRP3	8048	hgsc.bcm.edu;broad.mit.edu	37	11	19204231	19204231	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CSRP3	NM_003476	exon7	c.G571T	p.E191X	.	.	164	8	166	0	.	90
CTC1	80169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8141349	8141349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CTC1	NM_025099	exon4	c.G647A	p.R216K	.	.	83	24	76	0	.	93
CTSE	1510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206325312	206325312	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CTSE	NM_001910	exon5	c.A537C	p.A179A	.	.	288	111	253	0	.	91
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	113898777	113898777	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CUL4A	NM_001008895	exon12	c.G1282T	p.E428X	.	.	243	97	201	0	.	651
CWC25	54883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	36977155	36977155	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_017748	exon2	c.A190T	p.K64X	.	.	146	51	122	0	.	.
CYP2A6	1548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41354235	41354235	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CYP2A6	NM_000762	exon4	c.C543G	p.V181V	.	.	354	138	284	0	.	92
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	155157679	155157679	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DCHS2	NM_017639	exon25	c.G6760T	p.E2254X	.	.	73	27	92	0	.	94
DIP2A	23181	broad.mit.edu;bcgsc.ca	37	21	47977596	47977596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DIP2A	NM_015151	exon31	c.T3728C	p.V1243A	.	.	171	6	201	0	.	24
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84777070	84777070	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DNAH6	NM_001370	exon9	c.T1374C	p.N458N	.	.	111	18	107	0	.	69
DNAJC28	54943	bcgsc.ca	37	21	34861503	34861503	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DNAJC28	NM_001040192	exon2	c.A198G	p.E66E	.	.	157	6	152	0	.	90
DOCK10	55619	bcgsc.ca	37	2	225704751	225704751	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DOCK10	NM_014689	exon24	c.T2700C	p.S900S	.	.	105	5	105	0	.	92
DST	667	bcgsc.ca	37	6	56506762	56506762	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DST	NM_001723	exon3	c.A399G	p.A133A	.	.	87	5	88	0	.	523
DYSF	8291	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71755439	71755439	+	Missense_Mutation	SNP	G	G	T	rs144202114	byfrequency;alternate_allele	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DYSF	NM_001130982	exon14	c.G1288T	p.V430L	.	.	106	43	107	0	G|0.996;A|0.004	158
ELN	2006	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73477959	73477959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ELN	NM_001081754	exon29	c.G1942A	p.G648R	.	.	479	27	345	0	.	95
ENOPH1	58478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83378171	83378171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ENOPH1	NM_021204	exon5	c.T626G	p.F209C	.	.	176	55	168	0	.	22
EP400	57634	hgsc.bcm.edu	37	12	132547084	132547084	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	EP400	NM_015409	exon47	c.G8172A	p.Q2724Q	.	.	95	15	104	0	.	520
ESCO1	114799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19144186	19144186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ESCO1	NM_052911	exon7	c.C1799A	p.T600N	.	.	141	35	180	0	.	90
EZR	7430	broad.mit.edu;bcgsc.ca	37	6	159192397	159192397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	EZR	NM_003379	exon8	c.A838G	p.I280V	.	.	174	6	122	0	.	70
FAM169A	26049	bcgsc.ca	37	5	74109828	74109828	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM169A	NM_015566	exon6	c.T507C	p.S169S	.	.	90	4	108	0	.	22
FAM182B	728882	ucsc.edu	37	20	25755562	25755562	+	RNA	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	.	.	.	.	.	.	58	7	69	2	.	.
FAM186A	121006	bcgsc.ca	37	12	50745743	50745743	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM186A	NM_001145475	exon4	c.G4872T	p.G1624G	.	.	181	7	158	1	.	68
FAM192A	80011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57206205	57206205	+	Silent	SNP	C	C	T	rs180702754		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM192A	NM_024946	exon4	c.G306A	p.K102K	.	.	191	52	211	0	C|0.999;T|0.001	90
FAM69B	138311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139617874	139617874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM69B	NM_152421	exon5	c.A944C	p.D315A	.	.	38	8	47	0	.	90
FAM73A	374986	bcgsc.ca	37	1	78332077	78332077	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM73A	NM_198549	exon14	c.1563+1G>T	.	.	.	72	4	84	0	.	91
FARP1	10160	bcgsc.ca	37	13	99098974	99098974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FARP1	NM_005766	exon26	c.T2959C	p.S987P	.	.	149	6	159	2	.	290
FAT2	2196	bcgsc.ca	37	5	150897236	150897236	+	Missense_Mutation	SNP	A	A	G	rs74881423		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAT2	NM_001447	exon19	c.T11408C	p.L3803P	.	.	208	28	182	6	A|0.999;G|0.001	96
FBXL13	222235	broad.mit.edu	37	7	102473411	102473411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FBXL13	NM_145032	exon18	c.A1730G	p.K577R	.	.	130	4	86	0	.	226
FCHO2	115548	hgsc.bcm.edu	37	5	72347205	72347205	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FCHO2	NM_138782	exon12	c.C969A	p.Y323X	.	.	85	16	118	0	.	23
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72347203	72347204	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FCHO2	NM_138782	exon12	c.967_968insA	p.Y323_S324delinsX	.	.	82	16	116	0	.	23
FIP1L1	81608	bcgsc.ca	37	4	54310235	54310235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FIP1L1	NM_030917	exon15	c.A1250G	p.D417G	.	.	50	4	50	0	.	1083
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	115938874	115938876	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FKBP15	NM_015258	exon21	c.2164_2166del	p.722_722del	.	.	319	101	315	0	.	25
FMO2	2327	bcgsc.ca	37	1	171162545	171162545	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FMO2	NM_001460	exon3	c.T204C	p.C68C	.	.	83	4	83	0	.	91
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109261510	109261510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FNDC7	NM_001144937	exon4	c.T437G	p.I146S	.	.	197	75	227	0	.	92
FOXJ2	55810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8205442	8205442	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FOXJ2	NM_018416	exon11	c.C1721G	p.T574S	.	.	69	28	62	0	.	230
FURIN	5045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91423938	91423938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FURIN	NM_002569	exon14	c.C1574T	p.A525V	.	.	114	41	137	0	.	1083
GAS2	2620	bcgsc.ca	37	11	22696490	22696490	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GAS2	NM_177553	exon2	c.A75G	p.L25L	.	.	92	5	148	0	.	652
GATC	283459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120884359	120884359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GATC	NM_176818	exon1	c.C76T	p.P26S	.	.	58	6	54	0	.	22
GBP5	115362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89735097	89735097	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GBP5	NM_052942	exon3	c.C142G	p.R48G	.	.	378	150	344	0	.	91
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74026206	74026206	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GFM2	NM_032380	exon17	c.G1605C	p.M535I	.	.	133	53	139	0	.	90
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42005030	42005030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GLI3	NM_000168	exon15	c.A3641C	p.Q1214P	.	.	85	24	76	0	.	1149
GMPR2	51292	bcgsc.ca	37	14	24702784	24702784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GMPR2	NM_016576	exon2	c.A241G	p.M81V	.	.	149	7	172	0	.	93
GPR112	139378	broad.mit.edu	37	X	135427608	135427608	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GPR112	NM_153834	exon6	c.T1743C	p.R581R	.	.	174	5	169	0	.	183
GPR98	84059	bcgsc.ca	37	5	89985711	89985711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GPR98	NM_032119	exon30	c.T6524C	p.V2175A	.	.	122	5	134	0	.	103
GREB1	9687	bcgsc.ca	37	2	11770224	11770224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GREB1	NM_014668	exon26	c.G4600A	p.V1534M	.	.	85	4	73	0	.	91
GUCY2F	2986	bcgsc.ca	37	X	108636257	108636257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GUCY2F	NM_001522	exon13	c.A2452G	p.T818A	.	.	95	4	103	0	.	540
HEXDC	284004	bcgsc.ca	37	17	80393566	80393566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HEXDC	NM_173620	exon6	c.T449C	p.V150A	.	.	75	5	93	0	.	92
HMCN1	83872	broad.mit.edu	37	1	186106699	186106699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HMCN1	NM_031935	exon88	c.A13652G	p.K4551R	.	.	168	6	184	2	.	113
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121431506	121431506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	HNF1A,NS,other,0	HNF1A	NM_000545	exon3	c.A710G	p.N237S	.	.	70	28	60	0	.	1745
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	121426820	121426820	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HNF1A	NM_000545	exon2	c.C511T	p.R171X	.	.	81	30	81	0	.	1745
HTR7	3363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92509305	92509305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HTR7	NM_019860	exon2	c.G586T	p.G196W	.	.	137	52	92	0	.	91
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3190808	3190808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HTT	NM_002111	exon40	c.A5356G	p.I1786V	.	.	288	112	255	0	.	281
HYAL3	8372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50332788	50332788	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HYAL3	NM_001200030	exon2	c.C246T	p.P82P	.	.	61	18	86	0	.	279
IDS	3423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148582537	148582537	+	Silent	SNP	C	C	T	rs201892132		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	IDS	NM_006123	exon4	c.G450A	p.P150P	.	.	99	41	95	0	.	130
IKZF2	22807	broad.mit.edu;bcgsc.ca	37	2	214012503	214012503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	IKZF2	NM_001079526	exon4	c.C68A	p.S23Y	.	.	255	9	199	0	.	226
INTS8	55656	bcgsc.ca	37	8	95888316	95888316	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	INTS8	NM_017864	exon24	c.T2703C	p.C901C	.	.	151	5	130	0	.	90
INVS	27130	bcgsc.ca	37	9	103015360	103015360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	INVS	NM_183245	exon10	c.T1406C	p.I469T	.	.	80	4	49	0	.	92
ITFG2	55846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2933099	2933099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITFG2	NM_018463	exon11	c.G1230T	p.E410D	.	.	85	33	83	0	.	90
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37695227	37695227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITGA9	NM_002207	exon17	c.G1862A	p.R621H	.	.	164	61	179	0	.	715
ITK	3702	broad.mit.edu;bcgsc.ca	37	5	156675955	156675955	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITK	NM_005546	exon16	c.T1729C	p.L577L	.	.	85	6	68	1	.	1427
JHDM1D	80853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139798778	139798778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	JHDM1D	NM_030647	exon14	c.G1819A	p.E607K	.	.	444	107	341	2	.	91
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	123987858	123987858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KALRN	NM_003947	exon5	c.C719T	p.A240V	.	.	230	17	195	0	.	738
KIAA0319	9856	bcgsc.ca	37	6	24554814	24554814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KIAA0319	NM_001168375	exon19	c.T2903C	p.V968A	.	.	67	4	52	0	.	92
KIF23	9493	bcgsc.ca	37	15	69737274	69737274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KIF23	NM_138555	exon19	c.T2525C	p.I842T	.	.	88	4	61	0	.	227
KIF24	347240	bcgsc.ca	37	9	34254445	34254445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KIF24	NM_194313	exon13	c.G4040C	p.S1347T	.	.	84	9	84	0	.	22
KPNB1	3837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45757446	45757446	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KPNB1	NM_002265	exon20	c.T2414T	p.I805I	.	.	111	8	110	0	.	229
L3MBTL3	84456	broad.mit.edu	37	6	130442078	130442078	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	L3MBTL3	NM_032438	exon20	c.A1941G	p.E647E	.	.	240	4	249	0	.	96
LAMA1	284217	broad.mit.edu	37	18	6961990	6961990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LAMA1	NM_005559	exon52	c.A7406G	p.D2469G	.	.	388	10	310	0	.	149
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	33670561	33670561	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LARGE	NM_004737	exon16	c.A2123T	p.H708L	.	.	149	53	146	0	.	92
LCNL1	401562	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139878137	139878137	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_207510	exon1	c.G99T	p.L33L	.	.	159	54	158	1	.	.
LOC392196	0	broad.mit.edu;ucsc.edu	37	8	11985588	11985588	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	.	.	.	.	.	.	28	8	22	0	.	.
LRRIQ4	344657	bcgsc.ca	37	3	169550796	169550796	+	Missense_Mutation	SNP	A	A	G	rs201879509	byfrequency	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001080460	exon4	c.A1355G	p.E452G	.	.	212	26	218	5	A|0.992;G|0.008	.
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	33172789	33172789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LTBP1	NM_206943	exon1	c.A398G	p.K133R	.	.	70	19	56	0	.	230
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	25100161	25100161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LUZP2	NM_001009909	exon12	c.C998A	p.T333N	.	.	71	23	70	1	.	92
MAN2B2	23324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	6595009	6595009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MAN2B2	NM_015274	exon6	c.G790A	p.E264K	.	.	112	7	125	0	.	92
MAP3K6	9064	bcgsc.ca	37	1	27685223	27685223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MAP3K6	NM_004672	exon19	c.A2560G	p.S854G	.	.	59	4	69	0	.	1523
MAPK8IP1	9479	bcgsc.ca	37	11	45924665	45924665	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MAPK8IP1	NM_005456	exon5	c.T1347C	p.P449P	.	.	53	4	53	0	.	973
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141726934	141726934	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MGAM	NM_004668	exon9	c.G1002T	p.A334A	.	.	183	55	101	0	.	70
MICAL3	57553	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	18300440	18300440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MICAL3	NM_015241	exon26	c.C4987G	p.L1663V	.	.	55	19	58	0	.	68
MIR320E	100422913	ucsc.edu	37	19	47212593	47212593	+	RNA	SNP	A	A	G	rs10423365	byfrequency	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	.	.	.	.	.	.	23	5	18	0	A|0.516;G|0.484	.
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49425236	49425236	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MLL2	NM_003482	exon39	c.13252delG	p.E4418fs	.	.	99	34	137	0	.	612
MLL5	55904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	104747073	104747073	+	Missense_Mutation	SNP	A	A	G	rs200234811	alternate_allele	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MLL5	NM_018682	exon19	c.A2701G	p.T901A	.	.	208	59	166	1	.	93
MS4A2	2206	bcgsc.ca	37	11	59857850	59857850	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MS4A2	NM_000139	exon3	c.A228G	p.G76G	.	.	77	4	82	0	.	91
MS4A3	932	bcgsc.ca	37	11	59831738	59831738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MS4A3	NM_006138	exon4	c.T298C	p.C100R	.	.	138	5	126	1	.	93
MSH3	4437	bcgsc.ca	37	5	80040412	80040412	+	Missense_Mutation	SNP	A	A	C	rs200221632		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MSH3	NM_002439	exon12	c.A1741C	p.T581P	.	.	159	44	210	9	.	661
MST1R	4486	bcgsc.ca	37	3	49934722	49934722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MST1R	NM_001244937	exon7	c.T2174C	p.L725P	.	.	70	4	93	0	.	1406
MYH4	4622	broad.mit.edu;bcgsc.ca	37	17	10348564	10348564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MYH4	NM_017533	exon36	c.C5285T	p.A1762V	.	.	382	12	341	0	.	102
MYOF	26509	bcgsc.ca	37	10	95155955	95155955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MYOF	NM_133337	exon16	c.T1361C	p.V454A	.	.	85	5	93	0	.	93
NANS	54187	bcgsc.ca	37	9	100845291	100845291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NANS	NM_018946	exon6	c.T1034C	p.I345T	.	.	77	4	75	0	.	91
NCAPH2	29781	bcgsc.ca	37	22	50961727	50961727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NCAPH2	NM_001185011	exon20	c.T1744C	p.S582P	.	.	85	5	94	0	.	92
ND4	0	broad.mit.edu	37	MT	10971	10971	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	ENST00000361381	exon1	c.G212A	p.X71X	.	.	137	127	61	0	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13225	13225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	ENST00000361567	exon1	c.G889A	p.D297N	.	.	123	7	51	0	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	14071	14071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	ENST00000361567	exon1	c.A1735G	p.T579A	.	.	166	8	54	0	.	.
NDST1	3340	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149927947	149927947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NDST1	NM_001543	exon12	c.C2313A	p.N771K	.	.	33	12	33	1	.	136
NFKB2	4791	bcgsc.ca	37	10	104161650	104161650	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NFKB2	NM_002502	exon21	c.T2442C	p.S814S	.	.	58	4	71	0	.	522
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7981809	7981809	+	Silent	SNP	G	G	A	rs56052845		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NLRP10	NM_176821	exon2	c.C1350T	p.N450N	.	.	65	21	69	0	.	209
NLRP14	338323	bcgsc.ca	37	11	7060085	7060085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NLRP14	NM_176822	exon2	c.A268G	p.R90G	.	.	51	4	44	0	.	295
NPAS3	64067	bcgsc.ca	37	14	33684405	33684405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NPAS3	NM_001164749	exon3	c.A158G	p.K53R	.	.	80	4	98	0	.	93
NRG2	9542	bcgsc.ca	37	5	139260497	139260497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NRG2	NM_013982	exon3	c.A935G	p.E312G	.	.	123	5	124	0	.	526
OBSCN	84033	bcgsc.ca	37	1	228520971	228520971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	OBSCN	NM_001271223	exon69	c.A18674G	p.D6225G	.	.	84	5	76	0	.	403
OR2V1	26693	bcgsc.ca	37	5	180551707	180551707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001258283	exon1	c.C598T	p.L200F	.	.	83	4	64	0	.	.
OR5M8	219484	bcgsc.ca	37	11	56258005	56258005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	OR5M8	NM_001005282	exon1	c.T842C	p.I281T	.	.	82	4	109	0	.	68
OR8D4	338662	broad.mit.edu;bcgsc.ca	37	11	123777431	123777431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	OR8D4	NM_001005197	exon1	c.T293C	p.M98T	.	.	125	7	145	1	.	69
OR8G5	219865	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	124135110	124135110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001005198	exon1	c.C388A	p.P130T	.	.	283	116	321	0	.	.
OTOL1	131149	bcgsc.ca	37	3	161221693	161221693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001080440	exon4	c.T1397C	p.L466P	.	.	96	5	114	0	.	.
OTUD6B	51633	hgsc.bcm.edu	37	8	92082441	92082540	+	Frame_Shift_Del	DEL	CATTTAAGTTTCTCGTCTTTGCAGTGGCTTTGCTTAGATCCGGTGCCGCCTTGAAGGCGGGGCTGGGTCCCAGCCGTAGCCAATGGAGCCCCGGGTGAGG	CATTTAAGTTTCTCGTCTTTGCAGTGGCTTTGCTTAGATCCGGTGCCGCCTTGAAGGCGGGGCTGGGTCCCAGCCGTAGCCAATGGAGCCCCGGGTGAGG	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	CATTTAAGTTTCTCGTCTTTGCAGTGGCTTTGCTTAGATCCGGTGCCGCCTTGAAGGCGGGGCTGGGTCCCAGCCGTAGCCAATGGAGCCCCGGGTGAGG	CATTTAAGTTTCTCGTCTTTGCAGTGGCTTTGCTTAGATCCGGTGCCGCCTTGAAGGCGGGGCTGGGTCCCAGCCGTAGCCAATGGAGCCCCGGGTGAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	OTUD6B	NM_016023	wholegene			.	.	79	0	55	0	.	433
PABPC1	26986	broad.mit.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PABPC1	NM_002568	exon7	c.C956T	p.T319I	.	.	268	6	260	1	.	68
PALM2-AKAP2	445815	broad.mit.edu	37	9	112899712	112899712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PALM2-AKAP2	NM_007203	exon8	c.A1888G	p.T630A	.	.	104	5	103	0	.	475
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134075516	134075516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PCDH10	NM_032961	exon2	c.A2686C	p.N896H	.	.	174	59	183	0	.	92
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140203294	140203294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PCDHA5	NM_018908	exon1	c.G1934A	p.R645H	.	.	275	97	208	0	.	137
PDE1B	5153	bcgsc.ca	37	12	54960831	54960831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PDE1B	NM_000924	exon3	c.A187G	p.T63A	.	.	63	4	83	0	.	92
PHKA1	5255	broad.mit.edu	37	X	71933724	71933724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PHKA1	NM_001172436	exon1	c.G5A	p.R2K	.	.	91	6	81	2	.	134
PHKB	5257	bcgsc.ca	37	16	47536905	47536905	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PHKB	NM_000293	exon4	c.A309G	p.R103R	.	.	89	4	70	0	.	154
PIP5K1C	23396	broad.mit.edu	37	19	3656515	3656515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PIP5K1C	NM_001195733	exon6	c.C509T	p.P170L	.	.	157	5	136	0	.	267
PLCG2	5336	broad.mit.edu	37	16	81929511	81929511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PLCG2	NM_002661	exon13	c.A1172G	p.D391G	.	.	120	5	108	0	.	892
PLEKHH3	79990	bcgsc.ca	37	17	40821578	40821578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PLEKHH3	NM_024927	exon12	c.T2075C	p.L692P	.	.	144	9	147	1	.	158
PLEKHS1	79949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115528632	115528632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_024889	exon6	c.A418G	p.T140A	.	.	50	13	72	0	.	.
PLTP	5360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44531198	44531198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PLTP	NM_006227	exon11	c.C988G	p.L330V	.	.	164	64	203	0	.	91
PLXNC1	10154	bcgsc.ca	37	12	94673346	94673346	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PLXNC1	NM_005761	exon22	c.A3696G	p.Q1232Q	.	.	126	5	103	0	.	92
PLXNC1	10154	bcgsc.ca	37	12	94676128	94676128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PLXNC1	NM_005761	exon23	c.T3830C	p.V1277A	.	.	79	5	98	1	.	92
PNKD	25953	broad.mit.edu	37	2	219204796	219204796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PNKD	NM_015488	exon4	c.T397C	p.Y133H	.	.	146	5	165	0	.	90
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24744103	24744103	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	POLA1	NM_016937	exon13	c.G1305T	p.V435V	.	.	444	185	414	0	.	229
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74872759	74872759	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	POLK	NM_016218	exon6	c.694+1G>C	.	.	.	64	24	84	0	.	229
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	288028	288028	+	Missense_Mutation	SNP	C	C	T	rs148329482		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PPAP2C	NM_177543	exon2	c.G259A	p.V87I	.	.	162	66	169	0	C|0.999;T|0.001	90
PRELID2	153768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145176020	145176020	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PRELID2	NM_182960	exon6	c.A495C	p.R165R	.	.	45	20	62	0	.	90
PRIM2	5558	bcgsc.ca	37	6	57498983	57498983	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PRIM2	.	.	.	.	.	.	88	4	109	0	.	227
PRKDC	5591	bcgsc.ca	37	8	48826474	48826474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PRKDC	.	.	.	.	.	.	93	5	79	0	.	1515
PRPF4B	8899	bcgsc.ca	37	6	4032267	4032267	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PRPF4B	NM_003913	exon2	c.A516G	p.E172E	.	.	89	4	90	0	.	1308
PRR14L	253143	bcgsc.ca	37	22	32110096	32110096	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PRR14L	NM_173566	exon4	c.T3729C	p.S1243S	.	.	178	5	188	0	.	91
PRTG	283659	bcgsc.ca	37	15	55921143	55921143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PRTG	NM_173814	exon16	c.A2683G	p.I895V	.	.	83	4	98	0	.	92
PTENP1	11191	broad.mit.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	.	.	.	.	.	.	102	3	129	0	.	.
PTPN13	5783	broad.mit.edu	37	4	87653794	87653794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PTPN13	NM_006264	exon12	c.T1733C	p.L578P	.	.	103	4	97	0	.	230
PTPN13	5783	broad.mit.edu	37	4	87692501	87692501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PTPN13	NM_080685	exon31	c.G4996T	p.D1666Y	.	.	283	5	265	0	.	230
PTPRG	5793	broad.mit.edu;bcgsc.ca	37	3	62240818	62240818	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PTPRG	NM_002841	exon16	c.T2487C	p.P829P	.	.	107	8	118	0	.	419
RALY	22913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32664559	32664559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RALY	NM_016732	exon7	c.C596T	p.S199F	.	.	88	38	91	0	.	91
RNF111	54778	bcgsc.ca	37	15	59368164	59368164	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RNF111	NM_017610	exon7	c.A1698G	p.P566P	.	.	86	4	77	0	.	92
RNF145	153830	hgsc.bcm.edu	37	5	158621738	158621738	+	Silent	SNP	T	T	C	rs79950676	byfrequency	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RNF145	NM_001199380	exon3	c.A369G	p.G123G	.	.	255	12	237	0	T|0.996;C|0.004	525
RNF212	285498	broad.mit.edu	37	4	1066768	1066768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RNF212	NM_001131034	exon10	c.T788C	p.V263A	.	.	351	5	344	1	.	68
RNF216P1	441191	ucsc.edu	37	7	5036869	5036869	+	RNA	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	.	.	.	.	.	.	32	17	13	0	.	.
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	64644486	64644486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ROR1	NM_005012	exon9	c.G2762A	p.G921E	.	.	197	83	236	0	.	1536
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10469481	10469481	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RP1L1	NM_178857	exon4	c.G2127A	p.S709S	.	.	113	45	90	0	.	139
RPGRIP1	57096	bcgsc.ca	37	14	21802771	21802771	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RPGRIP1	NM_020366	exon20	c.A3246G	p.E1082E	.	.	88	5	113	0	.	140
RPRD2	23248	broad.mit.edu;bcgsc.ca	37	1	150337366	150337366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RPRD2	NM_015203	exon1	c.T176C	p.V59A	.	.	179	6	161	1	.	23
RPS6KA4	8986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64128041	64128041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RPS6KA4	NM_001006944	exon4	c.C439A	p.L147M	.	.	94	42	102	0	.	1036
RSF1	51773	broad.mit.edu;bcgsc.ca	37	11	77378071	77378071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RSF1	NM_016578	exon16	c.C4217T	p.S1406F	.	.	191	6	143	0	.	93
SEC24D	9871	bcgsc.ca	37	4	119660307	119660307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SEC24D	NM_014822	exon18	c.T2374C	p.S792P	.	.	75	4	54	0	.	90
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu	37	15	49284998	49284999	+	In_Frame_Ins	INS	-	-	TGGGGGTGTGTCAAATGGAAGTTG	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SECISBP2L	NM_001193489	exon18	c.2749_2750insCAACTTCCATTTGACACACCCCCA	p.I917delinsQLPFDTPPI	.	.	157	14	190	0	.	136
SETD1A	9739	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30976057	30976057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SETD1A	NM_014712	exon7	c.G994A	p.A332T	.	.	160	54	154	1	.	93
SGK1	6446	broad.mit.edu	37	6	134494415	134494415	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SGK1	NM_001143676	exon7	c.A699G	p.K233K	.	.	201	6	193	0	.	981
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28877909	28877909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SH2B1	NM_001145796	exon2	c.C494T	p.S165L	.	.	57	22	51	0	.	92
SIRT3	23410	bcgsc.ca	37	11	224089	224089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SIRT3	NM_012239	exon5	c.A958G	p.T320A	.	.	216	9	187	0	.	650
SLC12A3	6559	bcgsc.ca	37	16	56904560	56904560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SLC12A3	NM_001126108	exon6	c.A764G	p.D255G	.	.	93	7	89	0	.	155
SLC12A9	56996	bcgsc.ca	37	7	100456758	100456758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SLC12A9	NM_001267812	exon7	c.T952C	p.F318L	.	.	161	6	140	0	.	90
SLC25A41	284427	bcgsc.ca	37	19	6426419	6426419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_173637	exon7	c.A1094G	p.K365R	.	.	168	5	194	0	.	.
SLC38A9	153129	bcgsc.ca	37	5	54941652	54941652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SLC38A9	NM_173514	exon12	c.A1132G	p.T378A	.	.	79	4	87	0	.	68
SLC5A9	200010	bcgsc.ca	37	1	48694804	48694804	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SLC5A9	NM_001135181	exon4	c.A369G	p.R123R	.	.	92	4	77	0	.	93
SMARCAL1	50485	broad.mit.edu	37	2	217340044	217340044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SMARCAL1	NM_014140	exon15	c.A2297G	p.D766G	.	.	135	5	147	0	.	293
SORCS3	22986	mdanderson.org	37	10	106401643	106401643	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SORCS3	NM_014978	exon1	c.C558T	p.T186T	.	.	15	3	21	0	.	99
ST3GAL5	8869	bcgsc.ca	37	2	86067319	86067319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ST3GAL5	NM_003896	exon7	c.T1205C	p.V402A	.	.	222	6	185	0	.	90
SVEP1	79987	bcgsc.ca	37	9	113231299	113231299	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SVEP1	NM_153366	exon17	c.A3081G	p.E1027E	.	.	81	4	90	0	.	75
TACR3	6870	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104640561	104640561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TACR3	NM_001059	exon1	c.C272T	p.A91V	.	.	167	46	137	1	.	525
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8006861	8006861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TAF3	NM_031923	exon3	c.C1388T	p.S463L	.	.	109	39	108	0	.	69
TAF5	6877	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105142994	105142994	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TAF5	NM_006951	exon7	c.1535-1G>C	.	.	.	158	66	191	1	.	92
TCHH	7062	hgsc.bcm.edu	37	1	152084224	152084224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TCHH	NM_007113	exon3	c.A1469G	p.K490R	.	.	155	13	133	0	.	72
TCTN2	79867	broad.mit.edu;bcgsc.ca	37	12	124184293	124184293	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TCTN2	NM_024809	exon14	c.T1548C	p.T516T	.	.	105	7	109	0	.	91
TDGF1P3	6998	broad.mit.edu	37	X	109764286	109764286	+	RNA	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	.	.	.	.	.	.	90	34	79	0	.	.
TFB1M	51106	bcgsc.ca	37	6	155619639	155619639	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TFB1M	NM_016020	exon3	c.A366G	p.S122S	.	.	73	4	62	0	.	91
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41655675	41655675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	TFEB,NS,carcinoma,+1	TFEB	NM_001167827	exon5	c.C683T	p.A228V	.	.	205	78	215	1	.	659
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2582881	2582881	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TMC2	NM_080751	exon11	c.C1347T	p.Y449Y	.	.	236	73	252	0	.	93
TMEM183B	653659	broad.mit.edu	37	1	202991998	202991998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001079809	exon8	c.A961G	p.S321G	.	.	578	7	494	1	.	.
TMEM219	124446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29979380	29979380	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TMEM219	NM_001083613	exon4	c.C390T	p.A130A	.	.	116	49	109	0	.	90
TMEM241	85019	bcgsc.ca	37	18	21010632	21010632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_032933	exon2	c.T82C	p.S28P	.	.	69	4	63	0	.	.
TOPBP1	11073	bcgsc.ca	37	3	133335715	133335715	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TOPBP1	NM_007027	exon23	c.T3814C	p.L1272L	.	.	82	4	74	0	.	540
TPP2	7174	broad.mit.edu	37	13	103298673	103298673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TPP2	NM_003291	exon20	c.G2423A	p.G808E	.	.	114	4	124	0	.	92
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231337125	231337125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TRIM67	NM_001004342	exon5	c.C1396T	p.R466C	.	.	133	48	113	0	.	229
TRIP4	9325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	64701814	64701814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TRIP4	NM_016213	exon7	c.T830C	p.I277T	.	.	149	11	127	0	.	188
TTBK2	146057	bcgsc.ca	37	15	43069241	43069241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TTBK2	NM_173500	exon12	c.T1397C	p.F466S	.	.	81	4	81	0	.	338
TTC12	54970	broad.mit.edu	37	11	113235657	113235657	+	Silent	SNP	G	G	A	rs147254715		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TTC12	NM_017868	exon21	c.G1917A	p.A639A	.	.	187	5	215	0	G|1.000;A|0.000	93
TTC3	7267	bcgsc.ca	37	21	38522458	38522458	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TTC3	NM_001001894	exon24	c.A2199G	p.E733E	.	.	323	7	348	1	.	590
UCN2	90226	bcgsc.ca	37	3	48600554	48600554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	UCN2	NM_033199	exon2	c.A4G	p.T2A	.	.	126	6	130	0	.	68
URB2	9816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229794870	229794870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	URB2	NM_014777	exon10	c.A4401C	p.K1467N	.	.	85	5	87	0	.	174
USP6	9098	broad.mit.edu	37	17	5073927	5073927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	USP6	NM_004505	exon28	c.A3671G	p.N1224S	.	.	359	5	363	2	.	662
VAMP1	6843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575451	6575451	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	VAMP1	NM_014231	exon2	c.C69T	p.G23G	.	.	118	48	101	1	.	90
VWA5B2	90113	hgsc.bcm.edu	37	3	183952490	183952491	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_138345	exon6	c.892_893insC	p.A298fs	.	.	236	14	299	0	.	.
WT1	7490	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	32421555	32421555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	WT1	NM_024424	exon6	c.C1037T	p.T346M	.	.	261	11	269	0	.	6891
XIRP2	129446	bcgsc.ca	37	2	168108363	168108363	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	XIRP2	NM_152381	exon9	c.T10461C	p.S3487S	.	.	138	5	95	1	.	104
XPNPEP2	7512	bcgsc.ca	37	X	128895196	128895196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	XPNPEP2	NM_003399	exon17	c.T1547C	p.L516P	.	.	111	6	100	0	.	130
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	77158072	77158072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_015336	exon1	c.A56G	p.D19G	.	.	51	18	66	0	.	.
ZFAND4	93550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46111982	46111982	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001128324	exon10	c.G2086C	p.E696Q	.	.	228	71	224	0	.	.
ZMYND8	23613	broad.mit.edu;bcgsc.ca	37	20	45858486	45858486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZMYND8	NM_183047	exon17	c.A2785G	p.S929G	.	.	161	6	183	0	.	252
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219513586	219513586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF142	NM_001105537	exon6	c.G1045T	p.D349Y	.	.	143	53	97	0	.	137
ZNF280A	129025	bcgsc.ca	37	22	22868551	22868551	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF280A	NM_080740	exon2	c.G1404A	p.E468E	.	.	119	5	121	0	.	69
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22807281	22807281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF521	NM_015461	exon4	c.C601A	p.P201T	.	.	258	90	271	0	.	275
ZNF611	81856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53208756	53208756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF611	NM_030972	exon7	c.G1552C	p.V518L	.	.	138	60	143	0	.	91
ZNF750	79755	bcgsc.ca	37	17	80789390	80789390	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF750	NM_024702	exon2	c.A941C	p.N314T	.	.	180	41	191	10	.	90
ZNF772	400720	bcgsc.ca	37	19	57984729	57984729	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF772	NM_001024596	exon5	c.A1383G	p.P461P	.	.	62	4	72	0	.	90
ZPBP2	124626	bcgsc.ca	37	17	38031593	38031593	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZPBP2	NM_199321	exon7	c.T795C	p.F265F	.	.	71	4	74	0	.	91
