Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABR	29	ucsc.edu;bcgsc.ca	37	17	915220	915220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ABR	NM_021962	exon19	c.A1967G	p.E656G	.	.	23	4	29	0	.	91
AGPS	8540	bcgsc.ca	37	2	178364431	178364431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	AGPS	NM_003659	exon14	c.A1448G	p.Q483R	.	.	44	4	49	0	.	92
AKAP11	11215	bcgsc.ca	37	13	42877276	42877276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	AKAP11	NM_016248	exon8	c.T4394C	p.I1465T	.	.	122	5	107	0	.	227
ALAD	210	broad.mit.edu	37	9	116153813	116153813	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ALAD	NM_000031	exon4	c.T255C	p.V85V	.	.	91	4	105	0	.	90
ALDH16A1	126133	broad.mit.edu	37	19	49972226	49972226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ALDH16A1	NM_153329	exon16	c.T2230C	p.Y744H	.	.	47	3	44	0	.	91
ALPL	249	broad.mit.edu	37	1	21903944	21903944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ALPL	NM_000478	exon12	c.G1378T	p.A460S	.	.	25	5	38	0	.	94
AMBP	259	broad.mit.edu	37	9	116823230	116823230	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	AMBP	NM_001633	exon9	c.A1002G	p.R334R	.	.	85	4	61	0	.	91
AP5M1	55745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57741433	57741433	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_018229	exon2	c.T546C	p.D182D	.	.	125	45	161	0	.	.
ASPHD1	253982	broad.mit.edu	37	16	29912307	29912307	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ASPHD1	NM_181718	exon1	c.A15G	p.R5R	.	.	38	3	40	0	.	68
ATF6	22926	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161823113	161823113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ATF6	NM_007348	exon12	c.G1533T	p.Q511H	.	.	87	17	67	1	.	93
ATP8A2	51761	broad.mit.edu	37	13	26104140	26104140	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ATP8A2	NM_016529	exon3	c.G225A	p.T75T	.	.	130	3	142	0	.	138
BEST3	144453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70049144	70049144	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	BEST3	NM_032735	exon10	c.1550delG	p.G517fs	.	.	61	28	68	0	.	248
C14orf159	80017	broad.mit.edu	37	14	91666203	91666203	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	C14orf159,brain,glioma,0	C14orf159	NM_001102368	exon11	c.C1398T	p.D466D	.	.	126	3	137	0	.	92
C16orf46	123775	broad.mit.edu	37	16	81094820	81094820	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	C16orf46	NM_001100873	exon3	c.G1134A	p.P378P	.	.	124	3	156	0	.	90
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42744727	42744728	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	C17orf104	NM_001145080	exon5	c.1448_1449insA	p.T483fs	.	.	107	34	70	0	.	22
C1orf101	257044	broad.mit.edu	37	1	244641255	244641255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	C1orf101	NM_173807	exon4	c.T236C	p.I79T	.	.	532	5	385	0	.	154
C1orf21	81563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	184446676	184446676	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	C1orf21	NM_030806	exon2	c.T33A	p.T11T	.	.	92	48	56	0	.	90
CA9	768	broad.mit.edu	37	9	35679890	35679890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CA9	NM_001216	exon8	c.T1105C	p.S369P	.	.	100	4	101	2	.	95
CADPS2	93664	broad.mit.edu	37	7	122261639	122261639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CADPS2	NM_001167940	exon5	c.T1000C	p.L334L	.	.	125	4	141	0	.	94
CALD1	800	broad.mit.edu	37	7	134618234	134618234	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CALD1	NM_033138	exon5	c.T714C	p.P238P	.	.	99	4	137	0	.	226
CAPN9	10753	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230898441	230898441	+	Missense_Mutation	SNP	C	C	T	rs151280259		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CAPN9	NM_006615	exon4	c.C445T	p.R149C	.	.	95	12	49	0	C|1.000;T|0.000	91
CAPZA3	93661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18892064	18892064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CAPZA3	NM_033328	exon1	c.A862G	p.I288V	.	.	86	36	99	1	.	91
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38855544	38855544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CATSPERG	NM_021185	exon21	c.A2489T	p.D830V	.	.	58	17	63	0	.	92
CCDC113	29070	broad.mit.edu	37	16	58301390	58301390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CCDC113	NM_014157	exon7	c.T791C	p.L264P	.	.	219	5	255	0	.	90
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	32635624	32635625	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CCDC73	NM_001008391	exon16	c.2240_2241insA	p.E747fs	.	.	81	20	113	0	.	91
CDRT1	374286	bcgsc.ca	37	17	15522759	15522759	+	Missense_Mutation	SNP	A	A	T	rs201445711		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CDRT1	NM_006382	exon1	c.T68A	p.I23N	.	.	279	130	296	19	.	68
CEP350	9857	broad.mit.edu	37	1	179975609	179975609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CEP350	NM_014810	exon8	c.A1153G	p.K385E	.	.	476	6	341	0	.	26
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179965731	179965731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CEP350	NM_014810	exon6	c.G439A	p.E147K	.	.	117	82	86	0	.	26
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180003175	180003175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CEP350	NM_014810	exon16	c.G3904A	p.A1302T	.	.	249	160	144	0	.	26
CES1P2	0	bcgsc.ca	37	16	55783876	55783876	+	RNA	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	.	.	.	.	.	.	89	25	97	0	.	.
CHD7	55636	broad.mit.edu	37	8	61743063	61743063	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CHD7	NM_017780	exon15	c.A3705G	p.Q1235Q	.	.	406	6	118	0	.	141
CHRNA9	55584	broad.mit.edu	37	4	40351153	40351153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CHRNA9	NM_017581	exon4	c.G620A	p.G207D	.	.	154	3	185	0	.	96
COLEC10	10584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	120118098	120118103	+	In_Frame_Del	DEL	AACTAC	AACTAC	-	rs57284713	alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	AACTAC	AACTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	COLEC10	NM_006438	exon6	c.502_507del	p.168_169del	.	.	256	17	84	0	.	229
CORO1C	23603	broad.mit.edu;bcgsc.ca	37	12	109095009	109095009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CORO1C	NM_014325	exon2	c.T86C	p.V29A	.	.	102	5	112	0	.	228
CR1	1378	broad.mit.edu	37	1	207787831	207787831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CR1	NM_000651	exon40	c.G6658T	p.E2220X	.	.	259	5	184	0	.	93
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	rs28931589	bycluster	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101A	p.G34E	.	.	221	84	201	3	G|1.000;T|0.000	24361
CWC27	10283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	64314004	64314005	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CWC27	NM_005869	exon14	c.1275_1276insTT	p.Q425fs	.	.	262	145	202	0	.	90
DGKG	1608	ucsc.edu;mdanderson.org	37	3	186006618	186006618	+	Missense_Mutation	SNP	C	C	A	rs1004588	byfrequency;alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DGKG	NM_001346	exon6	c.C425T	p.T142I	.	.	94	34	132	0	C|0.491;G|0.509	714
DHODH	1723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72058091	72058091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DHODH	NM_001361	exon9	c.G1181C	p.R394P	.	.	162	53	185	0	.	227
DMXL1	1657	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118484603	118484603	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DMXL1	NM_005509	exon18	c.A3081G	p.P1027P	.	.	257	68	220	1	.	92
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38747842	38747842	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DNAH8	NM_001206927	exon15	c.2139+1G>T	.	.	.	83	21	80	0	.	615
DNASE2B	58511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	84864291	84864291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DNASE2B	NM_021233	exon1	c.C44A	p.A15D	.	.	89	40	87	0	.	90
DOC2A	8448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30018527	30018527	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DOC2A	NM_003586	exon6	c.G621A	p.K207K	.	.	49	23	44	0	.	92
DOCK10	55619	broad.mit.edu;bcgsc.ca	37	2	225670909	225670909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DOCK10	NM_014689	exon34	c.A3748G	p.T1250A	.	.	91	6	142	0	.	92
DSTYK	25778	bcgsc.ca	37	1	205128804	205128804	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DSTYK	NM_199462	exon9	c.T2109C	p.S703S	.	.	109	5	58	0	.	333
DYNLL1	8655	bcgsc.ca	37	12	120934232	120934232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DYNLL1	NM_001037494	exon2	c.A8G	p.D3G	.	.	54	4	65	0	.	90
DYNLL2	140735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56166589	56166589	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DYNLL2	NM_080677	exon3	c.C219T	p.F73F	.	.	127	27	119	0	.	90
EI24	9538	bcgsc.ca	37	11	125451166	125451166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	EI24	.	.	.	.	.	.	77	4	89	0	.	91
ELF4	2000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129200820	129200820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ELF4	NM_001421	exon9	c.C1868A	p.S623Y	.	.	67	47	78	0	.	659
EP400NL	347918	broad.mit.edu	37	12	132589038	132589038	+	RNA	SNP	A	A	G	rs61744079	byfrequency	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	.	.	.	.	.	.	69	5	87	0	A|0.931;G|0.069	.
EPPK1	83481	mdanderson.org	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	EPPK1	NM_031308	exon1	c.G7132C	p.D2378H	.	.	159	21	29	1	.	25
ERCC6L2	375748	bcgsc.ca	37	9	98728926	98728926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_001010895	exon14	c.A2063G	p.E688G	.	.	106	6	103	1	.	.
FABP1	2168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88424070	88424072	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FABP1	NM_001443	exon3	c.274_276del	p.92_92del	.	.	44	16	80	0	.	90
FAM154A	158297	broad.mit.edu	37	9	18928924	18928924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FAM154A	NM_153707	exon4	c.A551G	p.K184R	.	.	194	5	210	1	.	69
FBXO5	26271	bcgsc.ca	37	6	153293491	153293491	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FBXO5	NM_012177	exon4	c.T1008C	p.S336S	.	.	78	4	79	0	.	658
FDXACB1	91893	bcgsc.ca	37	11	111747320	111747320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FDXACB1	NM_138378	exon4	c.A577G	p.I193V	.	.	86	4	115	0	.	22
FMN2	56776	hgsc.bcm.edu	37	1	240371469	240371469	+	Silent	SNP	C	C	T	rs199920451		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FMN2	NM_020066	exon5	c.C3357T	p.P1119P	.	.	57	8	18	0	C|0.999;T|0.001	145
FMR1	2332	bcgsc.ca	37	X	147018098	147018098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FMR1	NM_002024	exon10	c.A956G	p.E319G	.	.	140	5	155	0	.	133
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39338482	39338482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FREM2	NM_207361	exon3	c.G5305C	p.A1769P	.	.	136	45	169	0	.	100
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89575922	89575922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GBP2	NM_004120	exon9	c.G1390A	p.E464K	.	.	116	54	149	0	.	91
GGA2	23062	bcgsc.ca	37	16	23480214	23480214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GGA2	NM_015044	exon16	c.C1724A	p.P575Q	.	.	58	4	59	0	.	91
GNG5	2787	broad.mit.edu;mdanderson.org	37	1	84971732	84971732	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GNG5	NM_005274	exon2	c.C43T	p.Q15X	.	.	13	5	14	0	.	227
GNL2	29889	bcgsc.ca	37	1	38040380	38040380	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GNL2	NM_013285	exon11	c.T1188C	p.A396A	.	.	127	6	138	0	.	91
GPR126	57211	bcgsc.ca	37	6	142691481	142691481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GPR126	NM_198569	exon4	c.C620T	p.A207V	.	.	120	40	145	3	.	91
GTF3C2	2976	broad.mit.edu;bcgsc.ca	37	2	27566349	27566349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GTF3C2	NM_001521	exon3	c.G73C	p.V25L	.	.	132	5	96	0	.	92
HBG1	3047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	5269688	5269688	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HBG1	NM_000559	exon3	c.G345A	p.L115L	.	.	214	66	248	0	.	90
HECTD2	143279	bcgsc.ca	37	10	93185159	93185159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HECTD2	NM_182765	exon2	c.T260C	p.I87T	.	.	120	5	131	0	.	658
HES1	3280	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	193855598	193855598	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HES1	NM_005524	exon4	c.T419G	p.L140R	.	.	28	15	49	0	.	659
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91784735	91784735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HFM1	NM_001017975	exon25	c.G2712T	p.K904N	.	.	106	46	118	0	.	112
HIPK3	10114	broad.mit.edu	37	11	33308926	33308926	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HIPK3	NM_001048200	exon2	c.T966C	p.D322D	.	.	129	4	172	0	.	336
HIST1H2BK	85236	bcgsc.ca	37	6	27114425	27114425	+	Silent	SNP	G	G	A	rs72613637	bycluster;byfrequency	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HIST1H2BK	NM_080593	exon1	c.C153T	p.P51P	.	.	113	16	120	6	G|0.333;A|0.667	68
IL17RA	23765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17577966	17577966	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	IL17RA	NM_014339	exon2	c.G153A	p.T51T	.	.	191	70	216	0	.	92
INPP4B	8821	broad.mit.edu;bcgsc.ca	37	4	143044547	143044547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	INPP4B	NM_003866	exon21	c.T1915C	p.F639L	.	.	54	4	110	0	.	228
INPP5A	3632	broad.mit.edu	37	10	134540360	134540360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	INPP5A	NM_005539	exon9	c.T683C	p.F228S	.	.	74	3	69	0	.	229
ITIH3	3699	broad.mit.edu	37	3	52828833	52828833	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ITIH3	NM_002217	exon1	c.G14A	p.W5X	.	.	48	3	42	0	.	93
ITSN2	50618	broad.mit.edu	37	2	24535241	24535241	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ITSN2	NM_147152	exon5	c.T192C	p.A64A	.	.	134	4	190	0	.	539
KCNQ4	9132	broad.mit.edu	37	1	41282977	41282977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KCNQ4	NM_004700	exon2	c.T355C	p.S119P	.	.	103	5	119	0	.	90
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55976858	55976858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	KDR,brain,glioma,+1	KDR	NM_002253	exon8	c.G1054T	p.A352S	.	.	184	74	230	0	.	2298
KIAA1429	25962	broad.mit.edu	37	8	95539332	95539332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KIAA1429	NM_015496	exon8	c.A1140G	p.E380E	.	.	717	10	228	1	.	92
KIAA1551	55196	broad.mit.edu	37	12	32134395	32134395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_018169	exon4	c.T506C	p.I169T	.	.	125	4	160	1	.	.
KIAA1958	158405	broad.mit.edu	37	9	115337105	115337105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KIAA1958	NM_133465	exon2	c.T745C	p.S249P	.	.	90	5	91	0	.	91
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	51901390	51901390	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KIF2B	NM_032559	exon1	c.G996T	p.V332V	.	.	109	30	90	0	.	98
KIRREL3	84623	bcgsc.ca	37	11	126316764	126316764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KIRREL3	NM_032531	exon9	c.A1015G	p.T339A	.	.	43	4	54	1	.	25
KRTAP5-4	387267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1642677	1642677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_001012709	exon1	c.C647A	p.S216Y	.	.	64	18	82	0	.	.
LOC646278	0	bcgsc.ca	37	15	29061990	29061990	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	.	.	.	.	.	.	112	5	136	1	.	.
LSP1P3	729862	ucsc.edu	37	5	28927394	28927394	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	.	.	.	.	.	.	90	43	68	0	.	.
MAP1A	4130	bcgsc.ca	37	15	43817783	43817783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MAP1A	NM_002373	exon4	c.A4112G	p.D1371G	.	.	80	5	108	1	.	141
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210517999	210517999	+	Silent	SNP	C	C	A	rs149857613	byfrequency;alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MAP2	NM_001039538	exon5	c.C105A	p.G35G	.	.	121	59	149	0	C|1.000;T|0.000	591
MAP4	4134	bcgsc.ca	37	3	47896823	47896823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MAP4	NM_001134364	exon17	c.A3176G	p.Q1059R	.	.	101	5	99	0	.	93
MARK3	4140	broad.mit.edu	37	14	103894757	103894757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MARK3	NM_001128921	exon3	c.A277G	p.N93D	.	.	285	5	358	2	.	360
MASP1	5648	bcgsc.ca	37	3	186974540	186974540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MASP1	NM_139125	exon5	c.A656G	p.E219G	.	.	136	6	127	0	.	94
MATN2	4147	broad.mit.edu	37	8	98943481	98943481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MATN2	NM_002380	exon3	c.T443C	p.F148S	.	.	133	4	41	0	.	24
MCM9	254394	broad.mit.edu	37	6	119136650	119136650	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MCM9	NM_017696	exon12	c.T2769C	p.F923F	.	.	124	5	137	0	.	515
MCTP1	79772	bcgsc.ca	37	5	94275886	94275886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MCTP1	NM_024717	exon5	c.A1075G	p.T359A	.	.	74	4	68	0	.	92
MFSD6	54842	broad.mit.edu	37	2	191301869	191301869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MFSD6	NM_017694	exon3	c.T1114C	p.F372L	.	.	157	4	145	0	.	92
MICU1	10367	broad.mit.edu	37	10	74128099	74128099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_001195518	exon12	c.A1285G	p.S429G	.	.	44	4	65	0	.	.
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24690139	24690139	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MPP6	NM_016447	exon6	c.A459G	p.V153V	.	.	77	29	69	0	.	90
MUC13	56667	bcgsc.ca	37	3	124632477	124632477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MUC13	NM_033049	exon7	c.T1013C	p.L338P	.	.	136	5	152	1	.	90
MUC17	140453	bcgsc.ca	37	7	100682908	100682908	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MUC17	NM_001040105	exon3	c.A8211G	p.E2737E	.	.	99	5	130	0	.	95
MUC20	200958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195452957	195452957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_152673	exon3	c.A970T	p.T324S	.	.	302	64	353	0	.	.
N4BP2L1	90634	broad.mit.edu	37	13	32977268	32977268	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	N4BP2L1	NM_052818	exon5	c.T543C	p.T181T	.	.	357	5	380	0	.	91
NAT10	55226	broad.mit.edu	37	11	34129823	34129823	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NAT10	NM_024662	exon2	c.A51G	p.G17G	.	.	112	4	127	1	.	92
NBPF22P	285622	broad.mit.edu	37	5	85580675	85580675	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	.	.	.	.	.	.	1249	10	1100	1	.	.
ND5	0	broad.mit.edu	37	MT	13063	13063	+	Missense_Mutation	SNP	G	G	A	rs28670513	bycluster	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	ENST00000361567	exon1	c.G727A	p.V243I	.	.	27	18	10	0	.	.
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75567215	75567215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NDST2	NM_003635	exon3	c.G932A	p.R311H	.	.	83	35	100	0	.	91
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29541512	29541512	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NF1	NM_001128147	exon13	c.1436delA	p.E479fs	.	.	202	103	183	0	.	3353
NIM1	0	broad.mit.edu	37	5	43280304	43280304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_153361	exon4	c.T784C	p.Y262H	.	.	145	4	95	1	.	.
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36976173	36976173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NIPBL	NM_015384	exon9	c.T1164A	p.N388K	.	.	226	121	162	0	.	293
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15303036	15303036	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NOTCH3	NM_000435	exon4	c.C414T	p.P138P	.	.	34	15	54	0	.	855
NSUN7	79730	broad.mit.edu	37	4	40810663	40810663	+	Missense_Mutation	SNP	A	A	G	rs4861066	byfrequency	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NSUN7	NM_024677	exon12	c.A1864G	p.T622A	.	.	88	4	100	0	A|0.808;G|0.192	90
NUFIP1	26747	broad.mit.edu	37	13	45517591	45517591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NUFIP1	NM_012345	exon9	c.T1357C	p.Y453H	.	.	224	4	271	1	.	90
NUP35	129401	bcgsc.ca	37	2	183993154	183993154	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NUP35	NM_138285	exon2	c.A180G	p.G60G	.	.	72	4	83	0	.	204
OFD1	8481	ucsc.edu;bcgsc.ca	37	X	13779284	13779284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	OFD1	NM_003611	exon17	c.A2341G	p.S781G	.	.	37	4	40	0	.	108
OPRM1	4988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154412549	154412549	+	Missense_Mutation	SNP	G	G	A	rs199984546		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	OPRM1	NM_001145279	exon5	c.G1385A	p.R462H	.	.	76	22	104	0	.	69
OR2B2	81697	broad.mit.edu	37	6	27879865	27879865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	OR2B2	NM_033057	exon1	c.T233C	p.V78A	.	.	100	4	142	0	.	68
OSGIN2	734	broad.mit.edu	37	8	90937086	90937086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	OSGIN2	NM_001126111	exon6	c.T976C	p.F326L	.	.	607	7	191	1	.	68
OSMR	9180	bcgsc.ca	37	5	38923346	38923346	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	OSMR	NM_003999	exon13	c.T1860C	p.S620S	.	.	62	4	50	0	.	496
PACS2	23241	broad.mit.edu;bcgsc.ca	37	14	105821449	105821449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PACS2	NM_001100913	exon4	c.C358T	p.R120C	.	.	65	5	62	0	.	69
PCDHGA2	56113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140720406	140720406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PCDHGA2	NM_018915	exon1	c.C1868T	p.T623M	.	.	56	22	27	0	.	71
PDILT	204474	broad.mit.edu	37	16	20371918	20371918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PDILT	NM_174924	exon11	c.T1478C	p.I493T	.	.	214	6	239	1	.	153
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28818225	28818225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PHACTR4	NM_023923	exon11	c.G1972T	p.V658L	.	.	81	32	95	0	.	90
PHLDB1	23187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118513074	118513074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PHLDB1	NM_001144758	exon13	c.C2839A	p.P947T	.	.	26	7	22	0	.	90
PKHD1L1	93035	broad.mit.edu	37	8	110478881	110478881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PKHD1L1	NM_177531	exon50	c.A8488G	p.S2830G	.	.	303	6	86	0	.	145
PKHD1L1	93035	broad.mit.edu;bcgsc.ca	37	8	110412530	110412530	+	Missense_Mutation	SNP	G	G	A	rs202180175	byfrequency	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PKHD1L1	NM_177531	exon13	c.G1238A	p.R413H	.	.	369	31	125	0	G|0.999;A|0.001	145
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160901606	160901606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PLA2R1	NM_001195641	exon2	c.G172C	p.V58L	.	.	127	44	126	0	.	93
PNP	4860	broad.mit.edu	37	14	20944716	20944716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PNP	NM_000270	exon6	c.T826C	p.S276P	.	.	69	4	79	1	.	229
POLQ	10721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121200622	121200622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	POLQ	NM_199420	exon19	c.C6008T	p.P2003L	.	.	112	42	130	1	.	664
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	38159033	38159033	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	POSTN	NM_006475	exon8	c.928delC	p.Q310fs	.	.	120	41	145	0	.	516
PRDM2	7799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	14108628	14108628	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRDM2	NM_015866	exon8	c.G4338A	p.L1446L	.	.	124	51	134	1	.	116
PRDX1	5052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45977016	45977016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRDX1	NM_181696	exon6	c.C585G	p.F195L	.	.	78	28	95	0	.	514
PRKACA	5566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14208204	14208204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRKACA	NM_002730	exon8	c.T734C	p.I245T	.	.	61	22	65	0	.	978
PRUNE2	158471	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79323927	79323927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRUNE2	NM_015225	exon8	c.A3263C	p.Y1088S	.	.	227	87	245	1	.	157
PTCD3	55037	broad.mit.edu	37	2	86364212	86364212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PTCD3	NM_017952	exon23	c.A1928G	p.E643G	.	.	159	4	147	0	.	91
RAB11FIP1	80223	broad.mit.edu	37	8	37728848	37728848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	RAB11FIP1	NM_001002814	exon4	c.A3472G	p.T1158A	.	.	58	3	145	0	.	92
RBFOX1	54715	broad.mit.edu;bcgsc.ca	37	16	7743337	7743337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	RBFOX1	NM_145893	exon12	c.C1079T	p.A360V	.	.	113	5	105	0	.	92
RPTOR	57521	broad.mit.edu	37	17	78867532	78867532	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	RPTOR	NM_020761	exon20	c.C2268T	p.P756P	.	.	56	3	36	0	.	847
RTN4IP1	84816	bcgsc.ca	37	6	107035555	107035555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	RTN4IP1	NM_032730	exon7	c.A989G	p.K330R	.	.	72	4	94	0	.	90
RUSC1	23623	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155296520	155296520	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	RUSC1	NM_001105203	exon8	c.C2011T	p.L671L	.	.	80	52	47	1	.	92
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92733944	92733944	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SAMD9	NM_001193307	exon2	c.C1467T	p.P489P	.	.	112	44	140	0	.	140
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65828070	65828070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SF3B2	NM_006842	exon14	c.G1647T	p.M549I	.	.	50	24	66	0	.	92
SH3GL1	6455	bcgsc.ca	37	19	4364185	4364185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SH3GL1	NM_003025	exon5	c.A365G	p.K122R	.	.	64	4	73	0	.	659
SLC22A17	51310	mdanderson.org	37	14	23821179	23821179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SLC22A17	NM_016609	exon2	c.T245C	p.L82P	.	.	9	3	14	0	.	226
SLC34A2	10568	broad.mit.edu	37	4	25676007	25676007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SLC34A2	NM_006424	exon11	c.T1306C	p.F436L	.	.	183	5	170	0	.	95
SLC34A2	10568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25664369	25664369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SLC34A2	NM_006424	exon3	c.C155T	p.P52L	.	.	144	47	168	0	.	95
SLX4	84464	broad.mit.edu	37	16	3651172	3651172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SLX4	NM_032444	exon5	c.A971G	p.K324R	.	.	103	4	121	0	.	94
SORCS1	114815	broad.mit.edu;mdanderson.org	37	10	108339225	108339225	+	Silent	SNP	C	C	A	rs142773000	byfrequency	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SORCS1	NM_001206572	exon25	c.G3273T	p.L1091L	.	.	32	11	47	1	C|1.000;A|0.000	153
SPACA7	122258	ucsc.edu;bcgsc.ca	37	13	113047360	113047360	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SPACA7	NM_145248	exon2	c.T120C	p.S40S	.	.	37	4	49	0	.	154
SPATA5	166378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123900511	123900511	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SPATA5	NM_145207	exon10	c.C1839T	p.A613A	.	.	111	38	135	0	.	90
SPTA1	6708	broad.mit.edu	37	1	158646017	158646017	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SPTA1	NM_003126	exon8	c.G1026A	p.Q342Q	.	.	194	6	123	0	.	142
SRPX	8406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	38020249	38020249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SRPX	NM_001170752	exon6	c.C712T	p.Q238X	.	.	44	30	46	0	.	130
SSB	6741	bcgsc.ca	37	2	170665055	170665055	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SSB	NM_003142	exon7	c.A618G	p.R206R	.	.	53	4	56	0	.	94
STAT3	6774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40481576	40481576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	STAT3	NM_003150	exon13	c.A1229G	p.H410R	.	.	150	79	141	0	.	1271
STK3	6788	hgsc.bcm.edu;mdanderson.org	37	8	99719383	99719383	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	STK3	NM_001256312	exon7	c.C592T	p.Q198X	.	.	228	16	88	0	.	978
TAF1B	9014	broad.mit.edu;bcgsc.ca	37	2	10073913	10073913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TAF1B	NM_005680	exon15	c.T1567C	p.Y523H	.	.	173	5	214	0	.	92
TAS2R30	259293	broad.mit.edu	37	12	11286395	11286395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_001097643	exon1	c.A449G	p.D150G	.	.	144	6	171	0	.	.
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131566320	131566320	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TBC1D13	NM_018201	exon9	c.G840T	p.S280S	.	.	67	24	55	0	.	90
TFDP3	51270	bcgsc.ca	37	X	132351745	132351745	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TFDP3	NM_016521	exon1	c.A543G	p.K181K	.	.	59	4	52	0	.	131
TMEM177	80775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120438937	120438937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TMEM177	NM_030577	exon2	c.G508T	p.A170S	.	.	53	15	58	0	.	91
TNMD	64102	bcgsc.ca	37	X	99848938	99848938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TNMD	NM_022144	exon3	c.A227G	p.K76R	.	.	142	5	165	1	.	130
TRAF3IP3	80342	broad.mit.edu	37	1	209952703	209952703	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRAF3IP3	NM_025228	exon14	c.A1296G	p.K432K	.	.	178	6	104	0	.	291
TRAF3IP3	80342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209936844	209936844	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRAF3IP3	NM_025228	exon8	c.T614A	p.L205Q	.	.	200	40	132	0	.	291
TRIM21	6737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4411479	4411479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRIM21	NM_003141	exon2	c.G161A	p.C54Y	.	.	62	19	76	0	.	229
TRIM42	287015	broad.mit.edu	37	3	140409819	140409819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRIM42	NM_152616	exon4	c.A1870G	p.T624A	.	.	133	4	136	1	.	227
TRMT10B	158234	broad.mit.edu;bcgsc.ca	37	9	37769962	37769962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_144964	exon6	c.T598C	p.F200L	.	.	68	5	82	0	.	.
TRMT44	152992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8465812	8465812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_152544	exon7	c.C1304T	p.A435V	.	.	98	40	107	0	.	.
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3493227	3493227	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRPV1	NM_018727	exon6	c.G918T	p.V306V	.	.	61	36	90	0	.	23
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3493239	3493239	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRPV1	NM_018727	exon6	c.C906T	p.N302N	.	.	48	29	81	0	.	23
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_145301	exon3	c.G152A	p.C51Y	.	.	192	33	255	8	.	.
UGT2B15	7366	broad.mit.edu	37	4	69519844	69519844	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	UGT2B15	NM_001076	exon5	c.A1224G	p.K408K	.	.	433	6	526	0	.	46
UNC13C	440279	broad.mit.edu	37	15	54307909	54307909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	UNC13C	NM_001080534	exon1	c.C2809T	p.P937S	.	.	96	3	101	0	.	51
UNC13D	201294	broad.mit.edu	37	17	73836648	73836648	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	UNC13D	NM_199242	exon9	c.A693G	p.K231K	.	.	97	3	57	0	.	92
WISP1	8840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134232984	134232984	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	WISP1	NM_003882	exon3	c.G510A	p.P170P	.	.	102	21	22	0	.	610
XKR4	114786	broad.mit.edu	37	8	56436550	56436550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	XKR4	NM_052898	exon3	c.T1717C	p.F573L	.	.	325	5	102	0	.	92
YAF2	10138	bcgsc.ca	37	12	42555455	42555455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	YAF2	NM_001190979	exon4	c.A337G	p.K113E	.	.	68	4	76	0	.	90
YY1	7528	broad.mit.edu	37	14	100742881	100742881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	YY1	NM_003403	exon4	c.C958T	p.H320Y	.	.	81	3	63	0	.	226
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57840110	57840110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ZNF543	NM_213598	exon4	c.A1280C	p.E427A	.	.	37	15	52	0	.	92
ZNF649	65251	broad.mit.edu	37	19	52394985	52394985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ZNF649	NM_023074	exon5	c.A404G	p.D135G	.	.	191	4	270	0	.	92
ZNF665	79788	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53667830	53667830	+	Missense_Mutation	SNP	C	C	T	rs73935258		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ZNF665	NM_024733	exon4	c.G1913A	p.R638H	.	.	59	25	56	1	C|0.982;T|0.018	70
ZNF710	374655	broad.mit.edu	37	15	90611363	90611363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ZNF710	NM_198526	exon2	c.T994C	p.F332L	.	.	43	3	63	0	.	90
ZNF85	7639	broad.mit.edu	37	19	21132507	21132507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ZNF85	NM_001256171	exon5	c.A1277G	p.K426R	.	.	50	4	64	0	.	514
