Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	bcgsc.ca	37	19	58864409	58864409	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	A1BG	NM_130786	exon3	c.T225C	p.P75P	.	.	91	4	96	0	.	90
ABCC4	10257	bcgsc.ca	37	13	95686878	95686878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ABCC4	NM_005845	exon30	c.T3851C	p.L1284P	.	.	90	6	90	0	.	515
ABHD12	26090	bcgsc.ca	37	20	25304023	25304023	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ABHD12	NM_001042472	exon3	c.A360G	p.Q120Q	.	.	94	4	85	0	.	91
ADAM32	203102	bcgsc.ca	37	8	39089597	39089597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ADAM32	NM_145004	exon15	c.A1577G	p.D526G	.	.	92	4	74	0	.	227
ADAMTS10	81794	bcgsc.ca	37	19	8649820	8649820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ADAMTS10	NM_030957	exon25	c.A3161G	p.E1054G	.	.	16	3	22	0	.	229
ANTXR1	84168	bcgsc.ca	37	2	69408969	69408969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ANTXR1	NM_032208	exon15	c.T1141C	p.S381P	.	.	146	5	109	0	.	94
AP1G1	164	bcgsc.ca	37	16	71782227	71782227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	AP1G1	NM_001030007	exon17	c.T1561C	p.S521P	.	.	69	4	55	0	.	92
APBA1	320	bcgsc.ca	37	9	72073083	72073083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	APBA1	NM_001163	exon6	c.A1504G	p.S502G	.	.	67	4	58	0	.	91
AQPEP	0	bcgsc.ca	37	5	115298822	115298822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_173800	exon1	c.A508G	p.T170A	.	.	10	3	50	0	.	.
ATG16L1	55054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234171807	234171807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ATG16L1	NM_017974	exon3	c.C241G	p.Q81E	.	.	59	17	94	0	.	90
BAI2	576	bcgsc.ca	37	1	32193187	32193187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	BAI2	NM_001703	exon33	c.A4592G	p.E1531G	.	.	70	5	46	0	.	526
BCL2L1	598	bcgsc.ca	37	20	30309608	30309608	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	BCL2L1	NM_138578	exon2	c.T414C	p.G138G	.	.	82	5	58	1	.	1084
BTG2	7832	bcgsc.ca	37	1	203274789	203274789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	BTG2	NM_006763	exon1	c.T55C	p.F19L	.	.	16	3	37	0	.	651
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34667861	34667861	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C1orf94	NM_032884	exon4	c.876+1G>T	.	.	.	77	27	103	0	.	90
C2orf44	80304	broad.mit.edu;bcgsc.ca	37	2	24262242	24262242	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C2orf44	NM_025203	exon2	c.T123C	p.L41L	.	.	108	6	123	0	.	154
C4orf21	55345	broad.mit.edu	37	4	113539295	113539295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C4orf21	NM_018392	exon6	c.A1903G	p.I635V	.	.	245	5	272	0	.	90
C8orf86	389649	broad.mit.edu;bcgsc.ca	37	8	38370074	38370074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C8orf86	NM_207412	exon3	c.T503C	p.L168P	.	.	89	5	82	0	.	90
CA3	761	broad.mit.edu;bcgsc.ca	37	8	86360370	86360370	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CA3	NM_005181	exon7	c.T771C	p.A257A	.	.	77	5	72	0	.	514
CCDC150	284992	broad.mit.edu	37	2	197576889	197576889	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_001080539	exon16	c.A1716G	p.E572E	.	.	110	4	115	0	.	.
CCDC158	339965	bcgsc.ca	37	4	77303834	77303834	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CCDC158	NM_001042784	exon7	c.A843G	p.T281T	.	.	144	5	146	0	.	96
CCDC173	129881	bcgsc.ca	37	2	170550795	170550795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_001085447	exon1	c.T43C	p.C15R	.	.	47	4	44	0	.	.
CD22	933	ucsc.edu	37	19	35828792	35828792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CD22	NM_001185100	exon5	c.T853C	p.S285P	.	.	42	4	33	0	.	526
CDCA7L	55536	bcgsc.ca	37	7	21985397	21985397	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CDCA7L	NM_018719	exon2	c.24+2T>C	.	.	.	27	4	44	0	.	90
CDR2L	30850	ucsc.edu	37	17	72999508	72999508	+	Missense_Mutation	SNP	A	A	G	rs2891668		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_014603	exon5	c.A737G	p.E246G	.	.	33	4	17	0	.	.
CEP135	9662	bcgsc.ca	37	4	56883947	56883947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CEP135	NM_025009	exon22	c.A2936G	p.E979G	.	.	161	6	140	0	.	94
CHD3	1107	bcgsc.ca	37	17	7797846	7797846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CHD3	NM_001005271	exon8	c.T1366C	p.C456R	.	.	90	5	116	2	.	228
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79035108	79035108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CMYA5	NM_153610	exon2	c.C10520A	p.S3507Y	.	.	96	38	51	0	.	77
COL27A1	85301	bcgsc.ca	37	9	117052351	117052351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	COL27A1	NM_032888	exon46	c.A4220G	p.K1407R	.	.	71	4	82	0	.	94
CORO1C	23603	ucsc.edu;bcgsc.ca	37	12	109055931	109055931	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CORO1C	NM_014325	exon4	c.C322C	p.P108P	.	.	45	4	35	0	.	228
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2876120	2876120	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CSMD1	NM_033225	exon52	c.G7908A	p.T2636T	.	.	71	25	76	0	.	86
CTDNEP1	23399	ucsc.edu;bcgsc.ca	37	17	7150596	7150596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CTDNEP1	NM_001143775	exon2	c.G169A	p.A57T	.	.	70	6	97	0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	.	.	76	33	113	0	.	24361
CUX2	23316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111746258	111746258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CUX2	NM_015267	exon14	c.C1186A	p.L396I	.	.	88	41	103	0	.	140
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15071	15071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	ENST00000361789	exon1	c.T325C	p.Y109H	.	.	395	37	71	0	.	.
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15119	15119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	ENST00000361789	exon1	c.G373A	p.A125T	.	.	336	13	69	0	.	.
DAGLB	221955	bcgsc.ca	37	7	6449659	6449659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DAGLB	NM_139179	exon15	c.T1828C	p.C610R	.	.	77	4	88	0	.	70
DCLK2	166614	bcgsc.ca	37	4	151000397	151000397	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DCLK2	NM_001040260	exon1	c.A218C	p.K73T	.	.	74	5	85	0	.	300
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21657266	21657266	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DNAH11	.	.	.	.	.	.	49	17	73	0	.	146
DNAJC5G	285126	bcgsc.ca	37	2	27498046	27498046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DNAJC5G	.	.	.	.	.	.	46	4	39	0	.	226
DPP8	54878	bcgsc.ca	37	15	65746712	65746712	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DPP8	NM_197960	exon18	c.T2208C	p.Y736Y	.	.	54	4	59	0	.	91
DSPP	1834	hgsc.bcm.edu	37	4	88537205	88537213	+	In_Frame_Del	DEL	GACAGCAGT	GACAGCAGT	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	GACAGCAGT	GACAGCAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DSPP	NM_014208	exon5	c.3391_3399del	p.1131_1133del	.	.	144	34	118	0	.	90
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58001190	58001190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DTX3	NM_178502	exon5	c.C544T	p.H182Y	.	.	85	35	89	0	.	1083
DYNC1I2	1781	bcgsc.ca	37	2	172546762	172546762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DYNC1I2	NM_001271789	exon2	c.A97G	p.K33E	.	.	128	5	145	0	.	91
EIF2B5	8893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183855595	183855595	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EIF2B5	NM_003907	exon3	c.506+2T>A	.	.	.	119	47	108	0	.	95
EIF3D	8664	bcgsc.ca	37	22	36916716	36916716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EIF3D	NM_003753	exon7	c.T485C	p.V162A	.	.	75	4	83	0	.	69
EIF4B	1975	broad.mit.edu	37	12	53431340	53431340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EIF4B	NM_001417	exon11	c.T1454C	p.V485A	.	.	177	7	185	0	.	568
ELAVL2	1993	bcgsc.ca	37	9	23731094	23731094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ELAVL2	NM_001171195	exon3	c.T259C	p.Y87H	.	.	74	4	75	0	.	516
ELOVL7	79993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60083199	60083199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ELOVL7	NM_001104558	exon2	c.G26T	p.R9M	.	.	54	28	73	0	.	90
EPHA6	285220	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	96706703	96706703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EPHA6	NM_001080448	exon3	c.G980A	p.R327Q	.	.	120	47	138	2	.	1561
EPHX3	79852	broad.mit.edu;bcgsc.ca	37	19	15338688	15338688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EPHX3	NM_001142886	exon7	c.A751G	p.T251A	.	.	86	4	78	0	.	90
ERCC6L2	375748	bcgsc.ca	37	9	98678578	98678578	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_001010895	exon6	c.T1053C	p.G351G	.	.	95	5	88	1	.	.
FAM196A	642938	ucsc.edu	37	10	128974612	128974612	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	FAM196A	NM_001039762	exon4	c.T48C	p.S16S	.	.	46	4	39	1	.	70
FAM69A	388650	broad.mit.edu	37	1	93309169	93309169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_001006605	exon5	c.A1058G	p.K353R	.	.	178	6	169	0	.	.
FAM96A	84191	bcgsc.ca	37	15	64381004	64381004	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	FAM96A	NM_032231	exon2	c.A171G	p.E57E	.	.	134	5	140	0	.	90
FBXW8	26259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117465265	117465265	+	Silent	SNP	G	G	A	rs188048498		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	FBXW8	NM_153348	exon10	c.G1608A	p.T536T	.	.	37	18	30	0	G|0.999;A|0.001	229
FNTA	2339	bcgsc.ca	37	8	42932419	42932419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	FNTA	NM_002027	exon6	c.A694G	p.R232G	.	.	81	4	121	1	.	91
FST	10468	bcgsc.ca	37	5	52779468	52779468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	FST	NM_013409	exon3	c.A412G	p.T138A	.	.	111	5	103	0	.	90
GAPDHS	26330	bcgsc.ca	37	19	36035815	36035815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GAPDHS	NM_014364	exon10	c.T1061C	p.V354A	.	.	107	5	98	0	.	226
GGN	199720	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38877740	38877740	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GGN	NM_152657	exon3	c.C162T	p.S54S	.	.	20	4	25	0	.	90
GLE1	2733	bcgsc.ca	37	9	131271329	131271329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GLE1	NM_001499	exon2	c.A274G	p.S92G	.	.	99	4	126	0	.	22
GMPS	8833	bcgsc.ca	37	3	155615744	155615744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GMPS	NM_003875	exon3	c.T238C	p.S80P	.	.	193	6	185	0	.	229
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	113913361	113913364	+	Frame_Shift_Del	DEL	GAGG	GAGG	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	GAGG	GAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GPAM	NM_020918	exon22	c.2431_2434del	p.811_812del	.	.	59	21	68	0	.	92
GPHN	10243	bcgsc.ca	37	14	67291193	67291193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GPHN	NM_001024218	exon4	c.A203G	p.E68G	.	.	80	5	82	0	.	228
GPR173	54328	broad.mit.edu	37	X	53106672	53106672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GPR173	NM_018969	exon2	c.C869T	p.A290V	.	.	51	4	64	1	.	130
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65435332	65435332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GUSB	NM_000181	exon9	c.A1413G	p.K471K	.	.	34	13	31	0	.	90
H2AFY2	55506	hgsc.bcm.edu;bcgsc.ca	37	10	71835423	71835423	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	H2AFY2	NM_018649	exon2	c.9delC	p.G3fs	.	.	90	22	119	0	.	91
HACL1	26061	broad.mit.edu	37	3	15637904	15637904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HACL1	NM_012260	exon3	c.T214C	p.Y72H	.	.	190	4	183	0	.	90
HEATR5B	54497	bcgsc.ca	37	2	37230697	37230697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HEATR5B	NM_019024	exon31	c.A5038G	p.R1680G	.	.	76	4	86	0	.	142
HELQ	113510	bcgsc.ca	37	4	84374674	84374674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HELQ	NM_133636	exon2	c.A722G	p.E241G	.	.	173	5	175	1	.	155
HMCN1	83872	bcgsc.ca	37	1	186024776	186024776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HMCN1	NM_031935	exon45	c.A7114G	p.T2372A	.	.	147	6	151	0	.	113
HNF4G	3174	bcgsc.ca	37	8	76471117	76471117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HNF4G	NM_004133	exon8	c.A938G	p.D313G	.	.	70	4	83	0	.	187
HOMEZ	57594	hgsc.bcm.edu	37	14	23744844	23744844	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HOMEZ	NM_020834	exon2	c.G1593A	p.E531E	.	.	85	5	83	0	.	22
HPS1	3257	ucsc.edu;bcgsc.ca	37	10	100183612	100183612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HPS1	NM_000195	exon15	c.A1430G	p.Q477R	.	.	40	4	63	0	.	91
HSD17B11	51170	bcgsc.ca	37	4	88278510	88278510	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HSD17B11	NM_016245	exon5	c.T616C	p.L206L	.	.	143	6	144	0	.	92
HSF4	3299	bcgsc.ca	37	16	67200300	67200300	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HSF4	NM_001538	exon7	c.561+2T>C	.	.	.	82	4	62	0	.	90
IPO9	55705	bcgsc.ca	37	1	201843403	201843403	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	IPO9	NM_018085	exon21	c.T2736C	p.P912P	.	.	115	5	107	0	.	228
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182350624	182350624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ITGA4	NM_000885	exon10	c.C1058T	p.A353V	.	.	127	46	129	0	.	230
ITGA5	3678	bcgsc.ca	37	12	54802006	54802006	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ITGA5	NM_002205	exon7	c.T705C	p.S235S	.	.	47	4	50	0	.	659
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20418810	20418810	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ITGB8	NM_002214	exon4	c.A525T	p.R175S	.	.	104	47	113	0	.	227
KCTD9	54793	broad.mit.edu	37	8	25298093	25298093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KCTD9	NM_017634	exon4	c.G311A	p.R104Q	.	.	70	3	62	0	.	90
KDM1B	221656	bcgsc.ca	37	6	18197302	18197302	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KDM1B	NM_153042	exon9	c.T588C	p.P196P	.	.	132	5	133	1	.	91
KIAA0947	23379	bcgsc.ca	37	5	5461035	5461035	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIAA0947	NM_015325	exon13	c.T1588C	p.L530L	.	.	152	6	136	0	.	48
KIAA1211L	343990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99454679	99454679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_207362	exon3	c.T142C	p.S48P	.	.	123	59	96	1	.	.
KIAA1429	25962	bcgsc.ca	37	8	95507994	95507994	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIAA1429	NM_015496	exon19	c.A4509G	p.S1503S	.	.	73	4	66	0	.	92
KIAA1468	57614	hgsc.bcm.edu;bcgsc.ca	37	18	59947916	59947948	+	In_Frame_Del	DEL	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIAA1468	NM_020854	exon24	c.3088_3114del	p.1030_1038del	.	.	72	19	87	0	.	158
KIAA1958	158405	bcgsc.ca	37	9	115421994	115421994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIAA1958	NM_133465	exon4	c.A1796G	p.D599G	.	.	108	5	84	0	.	91
KIFAP3	22920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170007568	170007568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIFAP3	NM_014970	exon5	c.A380T	p.D127V	.	.	150	46	135	0	.	91
KIFC1	3833	broad.mit.edu;bcgsc.ca	37	6	33372736	33372736	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIFC1	NM_002263	exon7	c.A864G	p.E288E	.	.	131	6	98	0	.	90
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	bycluster	TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	KRAS,NS,carcinoma,-1	KRAS	NM_004985	exon2	c.G38A	p.G13D	.	.	138	65	190	0	.	92875
KRTAP9-3	83900	ucsc.edu	37	17	39388811	39388811	+	Missense_Mutation	SNP	C	C	A	rs112082369		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KRTAP9-3	NM_031962	exon1	c.C58A	p.Q20K	.	.	18	3	43	1	C|0.828;A|0.172	91
LAMA5	3911	bcgsc.ca	37	20	60911442	60911442	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	LAMA5	NM_005560	exon18	c.A2277G	p.K759K	.	.	47	4	43	0	.	93
LILRA2	11027	bcgsc.ca	37	19	55085921	55085921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	LILRA2	NM_001130917	exon3	c.A224G	p.E75G	.	.	91	5	77	0	.	91
LTF	4057	bcgsc.ca	37	3	46497308	46497308	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	LTF	NM_002343	exon4	c.T477C	p.G159G	.	.	83	4	72	0	.	703
MED13L	23389	bcgsc.ca	37	12	116440841	116440841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MED13L	NM_015335	exon14	c.A2536G	p.K846E	.	.	73	4	73	0	.	232
MIER2	54531	bcgsc.ca	37	19	334528	334528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MIER2	NM_017550	exon3	c.T115C	p.S39P	.	.	41	4	46	0	.	90
MIPEP	4285	ucsc.edu;bcgsc.ca	37	13	24330758	24330758	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MIPEP	NM_005932	exon19	c.1971-1G>A	.	.	.	44	4	42	0	.	90
MITF	4286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	70014270	70014270	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MITF	NM_198159	exon10	c.C1434A	p.I478I	.	.	83	33	78	1	.	524
MPHOSPH9	10198	broad.mit.edu	37	12	123706023	123706023	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MPHOSPH9	NM_022782	exon1	c.T312C	p.C104C	.	.	162	5	187	1	.	514
MSH6	2956	bcgsc.ca	37	2	48018183	48018183	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MSH6	NM_000179	exon2	c.A378G	p.S126S	.	.	117	5	135	0	.	3014
MYO3B	140469	bcgsc.ca	37	2	171264292	171264292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MYO3B	NM_001083615	exon22	c.T2588C	p.V863A	.	.	137	5	136	0	.	530
NAA25	80018	bcgsc.ca	37	12	112471046	112471046	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	NAA25	NM_024953	exon23	c.T2787C	p.S929S	.	.	82	4	87	0	.	155
NASP	4678	bcgsc.ca	37	1	46070627	46070627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	NASP	NM_152298	exon4	c.A238G	p.T80A	.	.	98	5	93	0	.	91
NBPF1	55672	broad.mit.edu	37	1	16891333	16891333	+	Missense_Mutation	SNP	C	C	T	rs3872309	bycluster;byfrequency	TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	.	.	.	.	.	.	37	3	19	0	C|0.500;T|0.500	.
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3910	3910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	ENST00000361390	exon1	c.G604A	p.E202K	.	.	272	27	66	0	.	.
NISCH	11188	bcgsc.ca	37	3	52521410	52521410	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	NISCH	NM_007184	exon16	c.A1902G	p.E634E	.	.	57	5	55	0	.	93
NPAT	4863	broad.mit.edu	37	11	108043270	108043270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	NPAT	NM_002519	exon13	c.T2441C	p.L814P	.	.	175	5	220	0	.	117
NPC1L1	29881	bcgsc.ca	37	7	44574063	44574063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	NPC1L1	NM_001101648	exon6	c.T2149C	p.F717L	.	.	67	4	75	0	.	94
NUP188	23511	bcgsc.ca	37	9	131748856	131748856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	NUP188	NM_015354	exon21	c.A2096G	p.Q699R	.	.	107	5	85	0	.	207
OAZ3	51686	broad.mit.edu	37	1	151740571	151740571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	.	.	.	.	.	.	84	6	82	1	.	.
OR11H4	390442	broad.mit.edu	37	14	20711130	20711130	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	OR11H4	NM_001004479	exon1	c.A180G	p.R60R	.	.	217	5	212	0	.	69
OR1C1	26188	broad.mit.edu;bcgsc.ca	37	1	247921528	247921528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	OR1C1	NM_012353	exon1	c.T181C	p.F61L	.	.	150	5	134	1	.	91
OR6B1	135946	broad.mit.edu;bcgsc.ca	37	7	143701610	143701610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	OR6B1	NM_001005281	exon1	c.T521C	p.I174T	.	.	160	5	146	0	.	91
PALD1	27143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72301249	72301249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_014431	exon17	c.G2080A	p.V694M	.	.	65	20	50	0	.	.
PCDHGA7	56108	bcgsc.ca	37	5	140762696	140762696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_032087	exon1	c.T230C	p.L77P	.	.	57	4	74	0	.	.
PCLO	27445	broad.mit.edu;bcgsc.ca	37	7	82595422	82595422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PCLO	NM_014510	exon4	c.C3682T	p.R1228C	.	.	382	11	406	1	.	29
PFAS	5198	bcgsc.ca	37	17	8157270	8157270	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PFAS	NM_012393	exon2	c.T15C	p.L5L	.	.	49	4	63	0	.	94
PFKFB1	5207	bcgsc.ca	37	X	54978423	54978423	+	Missense_Mutation	SNP	A	A	G	rs146369182		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PFKFB1	NM_002625	exon8	c.T761C	p.I254T	.	.	65	4	65	1	A|1.000;G|0.000	131
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211640	249211640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PGBD2	NM_170725	exon3	c.G857T	p.R286M	.	.	122	60	119	0	.	91
PGC	5225	bcgsc.ca	37	6	41710221	41710221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PGC	NM_002630	exon5	c.A454G	p.S152G	.	.	72	4	60	0	.	90
PHF8	23133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54044138	54044138	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PHF8	NM_001184896	exon5	c.T518G	p.L173R	.	.	57	42	63	0	.	133
PHIP	55023	broad.mit.edu	37	6	79650617	79650617	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PHIP	NM_017934	exon40	c.A5259G	p.E1753E	.	.	195	5	192	0	.	579
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47630379	47630379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PHKB	NM_000293	exon13	c.T1300A	p.C434S	.	.	167	43	175	0	.	154
PLCB4	5332	bcgsc.ca	37	20	9453936	9453936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PLCB4	NM_001172646	exon37	c.A3419G	p.K1140R	.	.	98	4	117	0	.	274
PPP1R14C	81706	bcgsc.ca	37	6	150464606	150464606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PPP1R14C	NM_030949	exon1	c.A278G	p.E93G	.	.	37	7	30	1	.	658
PPP1R32	220004	bcgsc.ca	37	11	61257985	61257985	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_145017	exon13	c.A1221G	p.S407S	.	.	56	4	60	0	.	.
PPP1R3C	5507	bcgsc.ca	37	10	93389864	93389864	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PPP1R3C	NM_005398	exon2	c.T774C	p.H258H	.	.	101	4	119	0	.	658
PPP1R9B	84687	bcgsc.ca	37	17	48216633	48216633	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PPP1R9B	.	.	.	.	.	.	70	4	71	0	.	90
PRDM15	63977	bcgsc.ca	37	21	43248689	43248689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PRDM15	NM_022115	exon19	c.A2465G	p.D822G	.	.	58	4	77	0	.	90
PRHOXNB	646625	broad.mit.edu	37	13	28562743	28562743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PRHOXNB	NM_001105577	exon1	c.T32C	p.L11P	.	.	75	4	66	0	.	46
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	15506558	15506558	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PSIP1	NM_001128217	exon4	c.149+1G>T	.	.	.	58	14	47	0	.	658
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52384855	52384855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PXDNL	NM_144651	exon8	c.G704A	p.R235Q	.	.	80	30	72	0	.	70
QSOX2	169714	bcgsc.ca	37	9	139101097	139101097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	QSOX2	NM_181701	exon12	c.T1574C	p.F525S	.	.	50	4	66	0	.	91
QTRT1	81890	bcgsc.ca	37	19	10812642	10812642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	QTRT1	NM_031209	exon2	c.A260G	p.Q87R	.	.	49	4	51	0	.	91
RAPGEF6	51735	bcgsc.ca	37	5	130846014	130846014	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RAPGEF6	NM_001164387	exon8	c.T798C	p.D266D	.	.	60	4	72	0	.	661
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	183885770	183885770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RGL1	NM_015149	exon17	c.G2044T	p.E682X	.	.	75	30	99	0	.	725
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101054142	101054142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RGS22	NM_015668	exon12	c.C1826T	p.S609L	.	.	73	26	80	0	.	140
RIMS1	22999	bcgsc.ca	37	6	73110199	73110199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RIMS1	NM_014989	exon34	c.T4862C	p.V1621A	.	.	148	7	142	1	.	144
RNF11	26994	broad.mit.edu	37	1	51735793	51735793	+	Missense_Mutation	SNP	C	C	T	rs141444156		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RNF11	NM_014372	exon2	c.C289T	p.R97W	.	.	294	4	298	0	C|1.000;T|0.000	226
ROCK2	9475	broad.mit.edu	37	2	11348433	11348433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ROCK2	NM_004850	exon19	c.A2344G	p.K782E	.	.	96	4	94	0	.	546
SAMD8	142891	bcgsc.ca	37	10	76935942	76935942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SAMD8	NM_144660	exon5	c.T911C	p.V304A	.	.	165	5	190	1	.	90
SF3B1	23451	broad.mit.edu;bcgsc.ca	37	2	198266545	198266545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SF3B1	NM_012433	exon16	c.A2291G	p.Y764C	.	.	183	7	190	1	.	140
SH2D1A	4068	bcgsc.ca	37	X	123499640	123499640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SH2D1A	NM_001114937	exon2	c.T167C	p.V56A	.	.	116	5	106	1	.	130
SH3BP1	23616	bcgsc.ca	37	22	38046552	38046552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SH3BP1	NM_018957	exon16	c.T1418C	p.I473T	.	.	72	5	95	0	.	90
SIRT6	51548	bcgsc.ca	37	19	4175686	4175686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SIRT6	NM_016539	exon6	c.A605G	p.E202G	.	.	17	3	30	0	.	227
SLC11A1	6556	bcgsc.ca	37	2	219249053	219249053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SLC11A1	NM_000578	exon3	c.T238C	p.S80P	.	.	66	4	64	1	.	93
SLC19A1	6573	ucsc.edu	37	21	46951368	46951368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SLC19A1	NM_001205206	exon3	c.T884C	p.V295A	.	.	34	4	46	1	.	90
SLC36A4	120103	broad.mit.edu	37	11	92901144	92901144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SLC36A4	NM_152313	exon7	c.T734C	p.V245A	.	.	187	5	171	1	.	93
SLC4A11	83959	bcgsc.ca	37	20	3210064	3210064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SLC4A11	NM_001174090	exon15	c.T1906C	p.S636P	.	.	49	4	46	0	.	91
SLMAP	7871	bcgsc.ca	37	3	57882310	57882310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SLMAP	NM_007159	exon13	c.A1331G	p.D444G	.	.	106	5	124	0	.	90
SNPH	9751	broad.mit.edu	37	20	1285530	1285530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SNPH	NM_014723	exon6	c.A317G	p.E106G	.	.	43	5	57	0	.	92
SNX5	27131	bcgsc.ca	37	20	17923042	17923042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SNX5	NM_014426	exon13	c.T1174C	p.S392P	.	.	130	5	119	2	.	289
SP6	80320	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45925436	45925436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SP6	NM_001258248	exon2	c.G360T	p.W120C	.	.	20	8	37	0	.	91
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92988127	92988127	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ST8SIA2	NM_006011	exon5	c.C810T	p.Y270Y	.	.	41	19	43	0	.	90
STOX2	56977	bcgsc.ca	37	4	184930980	184930980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	STOX2	NM_020225	exon3	c.A989G	p.H330R	.	.	61	4	70	0	.	22
STXBP2	6813	bcgsc.ca	37	19	7706697	7706697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	STXBP2	NM_001272034	exon7	c.T569C	p.L190P	.	.	23	3	47	0	.	91
SYNE1	23345	bcgsc.ca	37	6	152782859	152782859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SYNE1	NM_033071	exon21	c.T2288C	p.V763A	.	.	135	5	121	0	.	607
TAS2R40	259286	bcgsc.ca	37	7	142919521	142919521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TAS2R40	NM_176882	exon1	c.T350C	p.V117A	.	.	205	6	155	0	.	23
TBC1D4	9882	broad.mit.edu	37	13	75880605	75880605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TBC1D4	NM_014832	exon15	c.A2596G	p.S866G	.	.	89	4	85	0	.	95
TCERG1	10915	bcgsc.ca	37	5	145862160	145862160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TCERG1	NM_006706	exon13	c.A1892G	p.D631G	.	.	66	4	141	0	.	92
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42608580	42608580	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TCF20	NM_181492	exon1	c.C2732G	p.P911R	.	.	160	62	143	0	.	95
THADA	63892	bcgsc.ca	37	2	43801649	43801649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	THADA	NM_001083953	exon11	c.A1555G	p.I519V	.	.	159	5	122	0	.	228
THBS1	7057	bcgsc.ca	37	15	39881441	39881441	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	THBS1	NM_003246	exon12	c.A1812G	p.G604G	.	.	58	4	65	0	.	653
TJP1	7082	broad.mit.edu;bcgsc.ca	37	15	30025368	30025368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TJP1	NM_175610	exon13	c.T1666C	p.S556P	.	.	121	5	114	0	.	95
TLR3	7098	broad.mit.edu;bcgsc.ca	37	4	187004022	187004022	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TLR3	NM_003265	exon4	c.A1182G	p.R394R	.	.	153	6	139	0	.	524
TMEM132D	121256	bcgsc.ca	37	12	130184498	130184498	+	Silent	SNP	T	T	C	rs201198157	alternate_allele	TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TMEM132D	NM_133448	exon2	c.A825G	p.T275T	.	.	220	8	170	0	T|1.000;A|0.000	106
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32959873	32959873	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TMEM132E	NM_207313	exon7	c.G1363C	p.D455H	.	.	64	14	43	0	.	68
TRPC1	7220	broad.mit.edu;bcgsc.ca	37	3	142524867	142524867	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TRPC1	NM_001251845	exon13	c.A2172G	p.K724K	.	.	206	7	180	0	.	92
UNG	7374	bcgsc.ca	37	12	109540656	109540656	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	UNG	NM_080911	exon5	c.T546C	p.I182I	.	.	62	4	49	0	.	1083
UXT	8409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47516683	47516683	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	UXT	NM_153477	exon4	c.T291C	p.D97D	.	.	53	40	63	1	.	130
VAC14	55697	bcgsc.ca	37	16	70817044	70817044	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	VAC14	NM_018052	exon8	c.705-2A>G	.	.	.	66	4	71	0	.	227
WWC3	55841	broad.mit.edu	37	X	10035430	10035430	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	WWC3	NM_015691	exon3	c.A120G	p.K40K	.	.	179	5	158	0	.	134
XRCC5	7520	bcgsc.ca	37	2	216995635	216995635	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	XRCC5	NM_021141	exon9	c.A975G	p.K325K	.	.	135	5	144	0	.	970
ZAN	7455	broad.mit.edu	37	7	100349994	100349994	+	RNA	SNP	C	C	A	rs221829		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZAN	.	.	.	.	.	.	51	7	52	1	C|1.000;|0.000	142
ZBTB40	9923	bcgsc.ca	37	1	22828896	22828896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZBTB40	NM_001083621	exon6	c.A1129G	p.T377A	.	.	58	4	78	0	.	91
ZFP62	643836	bcgsc.ca	37	5	180277356	180277356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_001172638	exon2	c.T1139C	p.L380P	.	.	68	4	100	0	.	.
ZNF230	7773	bcgsc.ca	37	19	44514841	44514841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF230	NM_006300	exon5	c.T650C	p.V217A	.	.	92	5	101	0	.	90
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53612315	53612315	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF415	NM_018355	exon4	c.A983T	p.Y328F	.	.	54	19	79	0	.	91
ZNF652	22834	bcgsc.ca	37	17	47394362	47394362	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF652	NM_001145365	exon2	c.A726G	p.K242K	.	.	175	5	170	0	.	91
ZNF792	126375	bcgsc.ca	37	19	35449629	35449629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_175872	exon4	c.A1130G	p.Q377R	.	.	89	4	125	1	.	.
ZNF862	643641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	149557719	149557719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF862	NM_001099220	exon7	c.C1470A	p.C490X	.	.	78	22	76	0	.	69
ZNF862	643641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149557718	149557718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF862	NM_001099220	exon7	c.G1469T	p.C490F	.	.	79	22	75	0	.	69
ZSCAN29	146050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43656356	43656356	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZSCAN29	NM_152455	exon4	c.A1447C	p.T483P	.	.	78	28	63	0	.	91
