Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AARS	16	bcgsc.ca	37	16	70305837	70305837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	AARS	NM_001605	exon5	c.A518G	p.D173G	.	.	70	4	88	0	.	91
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116417799	116417799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ABLIM1	NM_002313	exon1	c.G161A	p.R54H	.	.	92	10	122	0	.	153
ACTL6B	51412	broad.mit.edu	37	7	100252688	100252688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ACTL6B	NM_016188	exon4	c.T323C	p.V108A	.	.	52	3	73	0	.	91
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	5209306	5209306	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ADAMTS16	NM_139056	exon10	c.T1552A	p.C518S	.	.	120	7	185	0	.	275
ANKRD32	84250	broad.mit.edu;bcgsc.ca	37	5	93990398	93990398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ANKRD32	NM_032290	exon9	c.A1096G	p.T366A	.	.	135	5	139	0	.	92
ARHGAP26	23092	bcgsc.ca	37	5	142292771	142292771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ARHGAP26	NM_015071	exon10	c.A941G	p.D314G	.	.	67	4	76	0	.	660
ASGR2	433	broad.mit.edu	37	17	7010457	7010457	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ASGR2	NM_080912	exon7	c.C525T	p.T175T	.	.	74	4	79	0	.	91
ATP5G1	516	broad.mit.edu	37	17	46972573	46972573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ATP5G1	NM_005175	exon4	c.T173C	p.V58A	.	.	88	3	130	0	.	90
ATP8B4	79895	bcgsc.ca	37	15	50264898	50264898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ATP8B4	NM_024837	exon13	c.G1124A	p.R375Q	.	.	116	6	146	0	.	140
B4GALT6	9331	broad.mit.edu;bcgsc.ca	37	18	29237968	29237968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	B4GALT6	NM_004775	exon3	c.T317C	p.L106P	.	.	113	6	180	1	.	90
BDKRB1	623	broad.mit.edu	37	14	96730923	96730923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	BDKRB1	NM_000710	exon3	c.T904C	p.F302L	.	.	187	6	258	1	.	525
BPIFA1	51297	broad.mit.edu	37	20	31828077	31828077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_016583	exon5	c.A467G	p.K156R	.	.	115	4	135	0	.	.
C12orf42	374470	bcgsc.ca	37	12	103872177	103872177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C12orf42	NM_001099336	exon2	c.A28G	p.R10G	.	.	87	4	121	0	.	91
C14orf182	283551	broad.mit.edu	37	14	50472497	50472497	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C14orf182	NM_001012706	exon1	c.C21T	p.T7T	.	.	116	3	170	0	.	90
C18orf25	147339	broad.mit.edu	37	18	43796459	43796459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C18orf25	NM_145055	exon2	c.A613G	p.S205G	.	.	81	4	105	0	.	515
C1orf177	163747	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55272679	55272679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C1orf177	NM_001110533	exon2	c.T115C	p.S39P	.	.	64	7	100	0	.	90
C20orf96	140680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	257508	257508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C20orf96	NM_153269	exon9	c.C838T	p.P280S	.	.	72	10	110	0	.	90
C2CD5	9847	bcgsc.ca	37	12	22697079	22697079	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_014802	exon2	c.A6G	p.P2P	.	.	65	4	83	0	.	.
C4orf47	441054	broad.mit.edu	37	4	186357313	186357313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_001114357	exon3	c.C434T	p.P145L	.	.	155	4	155	1	.	.
C6orf118	168090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	165715587	165715587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	C6orf118	NM_144980	exon2	c.C224T	p.T75M	.	.	86	7	119	0	.	90
CCDC141	285025	broad.mit.edu	37	2	179701659	179701659	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CCDC141	NM_173648	exon23	c.A4287G	p.E1429E	.	.	134	4	169	2	.	78
CCNA1	8900	ucsc.edu;bcgsc.ca	37	13	37007267	37007267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CCNA1	NM_003914	exon2	c.T206C	p.L69P	.	.	36	6	40	0	.	418
CCNI	10983	broad.mit.edu	37	4	77969582	77969582	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CCNI	NM_006835	exon7	c.T924C	p.H308H	.	.	176	5	223	0	.	91
CDKN2C	1031	bcgsc.ca	37	1	51439831	51439831	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CDKN2C	NM_001262	exon3	c.T396C	p.H132H	.	.	54	4	79	1	.	1881
CER1	9350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14720318	14720318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CER1	NM_005454	exon2	c.T574C	p.S192P	.	.	81	10	106	1	.	226
CFHR1	3078	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	196800931	196800931	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CFHR1	NM_002113	exon6	c.G795A	p.P265P	.	.	494	43	642	1	.	90
CFTR	1080	broad.mit.edu	37	7	117180360	117180360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CFTR	NM_000492	exon8	c.A1076G	p.Q359R	.	.	115	4	141	0	.	518
CHD2	1106	broad.mit.edu	37	15	93567805	93567805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CHD2	NM_001271	exon39	c.A5357G	p.D1786G	.	.	108	4	153	1	.	229
CLCC1	23155	broad.mit.edu	37	1	109479980	109479980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CLCC1	NM_001048210	exon10	c.A1102G	p.S368G	.	.	71	4	102	1	.	91
CLIP2	7461	bcgsc.ca	37	7	73770804	73770804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CLIP2	NM_032421	exon5	c.T868C	p.F290L	.	.	58	4	69	0	.	93
COL5A3	50509	broad.mit.edu	37	19	10106757	10106757	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	COL5A3	NM_015719	exon15	c.A1518G	p.G506G	.	.	144	6	174	0	.	99
CPEB3	22849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93902837	93902837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CPEB3	NM_014912	exon6	c.G1402A	p.V468I	.	.	44	5	66	0	.	90
CTPS2	56474	broad.mit.edu	37	X	16717126	16717126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	CTPS2	NM_001144002	exon3	c.A257G	p.N86S	.	.	115	4	141	2	.	228
DCHS2	54798	bcgsc.ca	37	4	155176724	155176724	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	DCHS2	NM_017639	exon21	c.T5523C	p.S1841S	.	.	88	5	128	0	.	94
DIS3L2	129563	bcgsc.ca	37	2	233164817	233164817	+	Missense_Mutation	SNP	G	G	A	rs200386096		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	DIS3L2	NM_152383	exon14	c.G1727A	p.R576H	.	.	90	5	127	0	G|0.999;A|0.001	136
DMXL2	23312	broad.mit.edu	37	15	51766714	51766714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	DMXL2	NM_001174116	exon28	c.A7040G	p.E2347G	.	.	150	4	200	0	.	99
DPF2	5977	hgsc.bcm.edu;broad.mit.edu	37	11	65111286	65111286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	DPF2	NM_006268	exon5	c.G536A	p.R179H	.	.	90	4	124	0	.	91
DPYD	1806	bcgsc.ca	37	1	98058849	98058849	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	DPYD	NM_000110	exon10	c.T1053C	p.A351A	.	.	44	4	49	0	.	278
EPHA3	2042	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	89480486	89480486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	EPHA3	NM_005233	exon13	c.C2323T	p.P775S	.	.	100	8	130	0	.	1500
ESPNP	284729	bcgsc.ca	37	1	17033860	17033860	+	RNA	SNP	C	C	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	.	.	.	.	.	.	81	5	116	0	.	.
FAM179B	23116	broad.mit.edu	37	14	45497448	45497448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	FAM179B	NM_015091	exon10	c.T3574C	p.F1192L	.	.	230	6	276	1	.	93
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	119327610	119327610	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	FAM184A	NM_001100411	exon8	c.1455+2T>C	.	.	.	75	13	117	0	.	519
FAM208A	23272	bcgsc.ca	37	3	56700338	56700338	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_001112736	exon7	c.T972C	p.S324S	.	.	70	4	93	0	.	.
FLOT2	2319	bcgsc.ca	37	17	27207863	27207863	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	FLOT2	NM_004475	exon10	c.T1116C	p.A372A	.	.	51	4	63	0	.	522
FPR1	2357	bcgsc.ca	37	19	52249888	52249888	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	FPR1	NM_001193306	exon3	c.T360C	p.A120A	.	.	74	4	85	0	.	524
FPR3	2359	broad.mit.edu	37	19	52327644	52327644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	FPR3	NM_002030	exon2	c.T643C	p.S215P	.	.	157	4	210	0	.	501
FUT8	2530	hgsc.bcm.edu;bcgsc.ca	37	14	66188664	66188665	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	FUT8	NM_178155	exon8	c.1007_1008insA	p.I336fs	.	.	97	11	129	0	.	91
GABRA2	2555	bcgsc.ca	37	4	46388126	46388126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	GABRA2	NM_000807	exon3	c.A152G	p.D51G	.	.	84	4	125	0	.	94
GAN	8139	mdanderson.org	37	16	81348770	81348770	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	GAN	NM_022041	exon1	c.C52T	p.R18X	.	.	10	3	13	0	.	92
GPR97	222487	broad.mit.edu	37	16	57718100	57718100	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	GPR97	NM_170776	exon9	c.C1138T	p.L380L	.	.	72	3	106	1	.	91
GUSBP11	91316	ucsc.edu	37	22	23980682	23980682	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	.	.	.	.	.	.	21	1	37	0	.	.
H2AFZ	3015	bcgsc.ca	37	4	100870029	100870029	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	H2AFZ	NM_002106	exon4	c.A264G	p.Q88Q	.	.	161	6	240	0	.	90
HMCN1	83872	bcgsc.ca	37	1	186157077	186157077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	HMCN1	NM_031935	exon106	c.A16477G	p.R5493G	.	.	73	4	91	0	.	113
IFITM3	10410	broad.mit.edu	37	11	320649	320649	+	Silent	SNP	G	G	A	rs11553885	byfrequency	TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	IFITM3,brain,glioma,0	IFITM3	NM_021034	exon1	c.C165T	p.P55P	.	.	37	4	45	1	G|0.946;A|0.054	519
IL17RD	54756	broad.mit.edu	37	3	57139932	57139932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	IL17RD	NM_017563	exon7	c.T700C	p.Y234H	.	.	83	3	109	0	.	500
KCMF1	56888	bcgsc.ca	37	2	85276735	85276735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	KCMF1	NM_020122	exon6	c.A848G	p.Q283R	.	.	67	4	86	0	.	24
KIF6	221458	broad.mit.edu	37	6	39580987	39580987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	KIF6	NM_145027	exon6	c.A617G	p.D206G	.	.	116	4	161	0	.	713
L3MBTL4	91133	bcgsc.ca	37	18	6238034	6238034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	L3MBTL4	NM_173464	exon10	c.A713G	p.D238G	.	.	95	5	135	0	.	93
LBR	3930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225599103	225599103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	LBR	NM_194442	exon9	c.A1124G	p.N375S	.	.	148	17	217	1	.	228
LRP2	4036	broad.mit.edu;bcgsc.ca	37	2	170059322	170059322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	LRP2	NM_004525	exon43	c.A8153G	p.K2718R	.	.	107	6	133	0	.	175
LRP2	4036	broad.mit.edu;bcgsc.ca	37	2	170062972	170062972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	LRP2	NM_004525	exon39	c.A7258G	p.T2420A	.	.	119	6	137	0	.	175
MAGT1	84061	broad.mit.edu	37	X	77112920	77112920	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MAGT1	NM_032121	exon4	c.G561A	p.E187E	.	.	102	4	119	0	.	63
MBD3L2	125997	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	7051578	7051578	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MBD3L2	NM_144614	exon2	c.A572T	p.K191M	.	.	103	8	123	1	.	40
MET	4233	broad.mit.edu	37	7	116398666	116398666	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MET	NM_000245	exon9	c.T2256C	p.S752S	.	.	81	4	85	0	.	5874
MFNG	4242	bcgsc.ca	37	22	37875519	37875519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MFNG	NM_002405	exon4	c.A425G	p.D142G	.	.	63	4	97	0	.	658
MFSD4	148808	broad.mit.edu	37	1	205549067	205549067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MFSD4	NM_181644	exon2	c.T419C	p.V140A	.	.	44	3	39	1	.	92
MGAT3	4248	bcgsc.ca	37	22	39884152	39884152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MGAT3	NM_002409	exon2	c.A800G	p.H267R	.	.	11	3	29	0	.	90
MTERFD2	130916	bcgsc.ca	37	2	242039051	242039051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MTERFD2	NM_182501	exon2	c.A280G	p.R94G	.	.	72	4	132	0	.	91
MYO1H	283446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109838904	109838904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_001101421	exon5	c.C529A	p.P177T	.	.	66	8	81	1	.	.
MYOM2	9172	broad.mit.edu;bcgsc.ca	37	8	2071191	2071191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	MYOM2	NM_003970	exon29	c.A3520G	p.T1174A	.	.	75	4	91	0	.	95
NCR1	9437	ucsc.edu;bcgsc.ca	37	19	55418067	55418067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	NCR1	NM_001145458	exon3	c.C257T	p.P86L	.	.	43	4	53	0	.	154
NDEL1	81565	ucsc.edu	37	17	8363413	8363413	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	NDEL1	NM_001025579	exon8	c.T879C	p.C293C	.	.	124	2	147	0	.	90
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152420154	152420154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	NEB	NM_001271208	exon119	c.T18659C	p.V6220A	.	.	95	4	113	0	.	145
NEDD4	4734	bcgsc.ca	37	15	56134332	56134332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	NEDD4	NM_198400	exon12	c.A2679G	p.K893K	.	.	71	4	82	0	.	723
NF2	4771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30038257	30038258	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	NF2,NS,meningioma,-2	NF2	NM_181832	exon4	c.430_431insA	p.Y144_A145delinsX	.	.	65	9	95	0	.	4696
OR1S2	219958	broad.mit.edu	37	11	57970760	57970760	+	Missense_Mutation	SNP	C	C	T	rs200054918		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	OR1S2	NM_001004459	exon1	c.G894A	p.M298I	.	.	98	5	155	2	.	69
OR5T2	219464	broad.mit.edu;bcgsc.ca	37	11	56000370	56000370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	OR5T2	NM_001004746	exon1	c.A292G	p.M98V	.	.	74	4	117	0	.	70
PAF1	54623	broad.mit.edu	37	19	39879240	39879240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PAF1	NM_019088	exon10	c.C817T	p.R273W	.	.	170	3	213	1	.	69
PAGE2B	389860	broad.mit.edu	37	X	55103073	55103073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PAGE2B	NM_001015038	exon3	c.T156A	p.S52R	.	.	512	7	668	0	.	90
PAM	5066	bcgsc.ca	37	5	102343168	102343168	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PAM	NM_138822	exon19	c.A2022G	p.S674S	.	.	104	5	163	1	.	68
PARP16	54956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	65563339	65563339	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PARP16	NM_017851	exon2	c.C246T	p.A82A	.	.	93	8	110	0	.	522
PCCB	5096	ucsc.edu;bcgsc.ca	37	3	136012601	136012601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PCCB	NM_001178014	exon8	c.A718G	p.T240A	.	.	35	4	40	0	.	90
PEX7	5191	bcgsc.ca	37	6	137191090	137191090	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PEX7	NM_000288	exon7	c.A696G	p.R232R	.	.	152	5	165	0	.	90
PHLDB1	23187	bcgsc.ca	37	11	118527439	118527439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PHLDB1	NM_001144758	exon23	c.T4040C	p.L1347P	.	.	80	4	99	0	.	90
PIK3CG	5294	bcgsc.ca	37	7	106513260	106513260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PIK3CG	NM_002649	exon4	c.A2164G	p.R722G	.	.	94	4	131	0	.	1316
PLEKHM3	389072	bcgsc.ca	37	2	208866094	208866094	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PLEKHM3	NM_001080475	exon2	c.T270C	p.P90P	.	.	62	4	81	0	.	23
PLK1S1	55857	bcgsc.ca	37	20	21143595	21143595	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	.	.	.	.	.	.	79	4	121	0	.	.
PMPCB	9512	bcgsc.ca	37	7	102944319	102944319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PMPCB	NM_004279	exon5	c.A488G	p.N163S	.	.	104	5	134	1	.	94
POLR3K	51728	bcgsc.ca	37	16	101562	101562	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	POLR3K	NM_016310	exon2	c.T195C	p.T65T	.	.	56	4	62	0	.	90
PPP1R3A	5506	broad.mit.edu;bcgsc.ca	37	7	113518454	113518454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	PPP1R3A	NM_002711	exon4	c.T2693C	p.V898A	.	.	90	5	141	0	.	832
PTPRQ	374462	broad.mit.edu	37	12	80936073	80936073	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_001145026	exon19	c.T3135C	p.F1045F	.	.	110	4	144	0	.	.
QSER1	79832	broad.mit.edu	37	11	32976927	32976927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	QSER1	NM_001076786	exon6	c.A4199G	p.D1400G	.	.	225	5	278	0	.	95
RAC1	5879	bcgsc.ca	37	7	6441552	6441552	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RAC1	NM_018890	exon6	c.A399G	p.G133G	.	.	73	4	88	0	.	659
RANBP2	5903	broad.mit.edu	37	2	109381759	109381759	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RANBP2	NM_006267	exon20	c.T4764C	p.T1588T	.	.	300	6	346	0	.	675
RGN	9104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46951499	46951499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RGN	NM_004683	exon6	c.C734A	p.T245K	.	.	72	11	99	0	.	130
RIBC2	26150	ucsc.edu	37	22	45826808	45826808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RIBC2	.	.	.	.	.	.	39	4	71	0	.	90
RIC3	79608	broad.mit.edu	37	11	8132453	8132453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RIC3	NM_001206671	exon6	c.A902G	p.E301G	.	.	213	6	253	1	.	155
RIMKLB	57494	broad.mit.edu	37	12	8925947	8925947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_020734	exon7	c.A728G	p.E243G	.	.	171	4	186	0	.	.
RIOK2	55781	bcgsc.ca	37	5	96506948	96506948	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RIOK2	NM_001159749	exon6	c.T741C	p.F247F	.	.	101	4	135	0	.	419
RRS1	23212	bcgsc.ca	37	8	67341432	67341432	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RRS1	NM_015169	exon1	c.A66G	p.Q22Q	.	.	56	4	77	0	.	90
RYR1	6261	bcgsc.ca	37	19	39013918	39013918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	RYR1	NM_001042723	exon69	c.T10409C	p.L3470P	.	.	55	4	62	0	.	100
SAAL1	113174	broad.mit.edu	37	11	18108461	18108461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SAAL1	NM_138421	exon9	c.G994A	p.A332T	.	.	108	3	175	1	.	90
SERAC1	84947	bcgsc.ca	37	6	158541585	158541585	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SERAC1	NM_032861	exon11	c.A1038G	p.E346E	.	.	86	4	90	0	.	90
SERGEF	26297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18010209	18010209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SERGEF	NM_012139	exon8	c.A779C	p.H260P	.	.	70	9	120	0	.	227
SETX	23064	broad.mit.edu	37	9	135202766	135202766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SETX	NM_015046	exon10	c.A4219G	p.N1407D	.	.	188	5	245	1	.	93
SIDT1	54847	bcgsc.ca	37	3	113299543	113299543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SIDT1	NM_017699	exon5	c.T650C	p.V217A	.	.	82	4	109	1	.	95
SIGLEC12	89858	bcgsc.ca	37	19	52003509	52003509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SIGLEC12	NM_053003	exon2	c.C473T	p.S158L	.	.	92	5	127	1	.	96
SLC10A4	201780	broad.mit.edu	37	4	48490894	48490894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SLC10A4	NM_152679	exon3	c.T1252C	p.S418P	.	.	98	3	122	0	.	90
SLC51A	200931	broad.mit.edu;bcgsc.ca	37	3	195959961	195959961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_152672	exon9	c.A914G	p.E305G	.	.	62	4	78	0	.	.
SNRNP200	23020	bcgsc.ca	37	2	96940805	96940805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SNRNP200	NM_014014	exon45	c.A6356G	p.E2119G	.	.	85	4	148	0	.	162
SOCS7	30837	bcgsc.ca	37	17	36523852	36523852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SOCS7	NM_014598	exon6	c.A1279G	p.S427G	.	.	109	5	148	0	.	227
SPINT3	10816	bcgsc.ca	37	20	44144177	44144177	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_006652	exon1	c.A72G	p.A24A	.	.	37	4	69	0	.	.
SPRR1B	6699	broad.mit.edu;bcgsc.ca	37	1	153004891	153004891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SPRR1B	NM_003125	exon2	c.C70T	p.P24S	.	.	111	6	136	1	.	69
SSFA2	6744	broad.mit.edu	37	2	182766649	182766649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	SSFA2	NM_001130445	exon8	c.A869G	p.N290S	.	.	99	4	135	0	.	153
STRIP2	57464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129110535	129110535	+	Silent	SNP	G	G	C	rs139413732	alternate_allele	TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_020704	exon18	c.G1923C	p.P641P	.	.	100	18	140	0	G|0.999;A|0.001	.
TAF1L	138474	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32631815	32631815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TAF1L	NM_153809	exon1	c.C3763T	p.R1255W	.	.	208	28	310	1	.	870
TARP	0	broad.mit.edu	37	7	38305053	38305053	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_001003806	exon2	c.G42A	p.T14T	.	.	190	5	245	0	.	.
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183694627	183694627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_001080477	exon22	c.A4895G	p.Y1632C	.	.	195	22	278	0	.	.
THUMPD2	80745	broad.mit.edu	37	2	39997063	39997063	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	THUMPD2	NM_025264	exon3	c.A459G	p.Q153Q	.	.	234	4	317	1	.	91
TMEM87A	25963	bcgsc.ca	37	15	42519938	42519938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TMEM87A	NM_015497	exon14	c.A1270G	p.M424V	.	.	91	4	102	0	.	91
TNFRSF21	27242	broad.mit.edu	37	6	47253842	47253842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TNFRSF21	NM_014452	exon2	c.A586G	p.N196D	.	.	92	4	125	1	.	227
TNNT3	7140	bcgsc.ca	37	11	1955215	1955215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TNNT3	NM_006757	exon11	c.A343G	p.R115G	.	.	74	7	79	1	.	91
TNS1	7145	broad.mit.edu	37	2	218683406	218683406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TNS1	NM_022648	exon24	c.T3337C	p.S1113P	.	.	66	3	72	0	.	156
TPM3	7170	bcgsc.ca	37	1	154163713	154163713	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TPM3	NM_152263	exon2	c.T192C	p.A64A	.	.	84	4	134	1	.	416
TRIM49C	642612	broad.mit.edu	37	11	89774241	89774241	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	NM_001195234	exon8	c.A882G	p.E294E	.	.	162	4	195	1	.	.
TSC2	7249	broad.mit.edu;bcgsc.ca	37	16	2130279	2130279	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TSC2	NM_001114382	exon30	c.3511delG	p.A1171fs	.	.	68	9	118	0	.	1908
TTC4	7268	ucsc.edu;bcgsc.ca	37	1	55186890	55186890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TTC4	NM_004623	exon4	c.G446A	p.C149Y	.	.	30	4	42	0	.	90
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179463630	179463630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	TTN	NM_001267550	exon291	c.G56807A	p.R18936Q	.	.	134	15	200	1	.	636
UBR3	130507	broad.mit.edu;bcgsc.ca	37	2	170753052	170753052	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	UBR3	NM_172070	exon8	c.T1272C	p.A424A	.	.	171	6	208	0	.	68
UNC93B1	81622	broad.mit.edu	37	11	67763138	67763138	+	Missense_Mutation	SNP	T	T	C	rs3175471		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	.	.	.	.	.	.	.	43	4	70	0	T|1.000;|0.000	.
USP34	9736	bcgsc.ca	37	2	61447566	61447566	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	USP34	NM_014709	exon67	c.T7926C	p.C2642C	.	.	65	4	108	1	.	579
VPS13D	55187	bcgsc.ca	37	1	12331174	12331174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	VPS13D	NM_015378	exon17	c.A2096G	p.D699G	.	.	76	4	110	0	.	95
WDFY3	23001	bcgsc.ca	37	4	85676492	85676492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	WDFY3	NM_014991	exon34	c.T5486C	p.V1829A	.	.	170	6	235	0	.	93
WDR66	144406	bcgsc.ca	37	12	122361711	122361711	+	Missense_Mutation	SNP	C	C	T	rs34703321	byfrequency	TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	WDR66	NM_001178003	exon3	c.C562T	p.R188W	.	.	60	4	87	0	C|0.995;T|0.005	92
ZDBF2	57683	broad.mit.edu	37	2	207175254	207175254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ZDBF2	NM_020923	exon5	c.A6002G	p.K2001R	.	.	106	4	133	0	.	3
ZDHHC8	29801	broad.mit.edu	37	22	20127313	20127313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ZDHHC8	NM_001185024	exon4	c.T455C	p.F152S	.	.	39	4	70	0	.	91
ZFYVE9	9372	bcgsc.ca	37	1	52805832	52805832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ZFYVE9	NM_004799	exon17	c.A3868G	p.T1290A	.	.	146	5	206	0	.	230
ZNF233	353355	broad.mit.edu;bcgsc.ca	37	19	44768517	44768517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ZNF233	NM_001207005	exon2	c.A4G	p.T2A	.	.	163	6	222	1	.	92
ZNF418	147686	broad.mit.edu;bcgsc.ca	37	19	58439199	58439199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ZNF418	NM_133460	exon4	c.A350C	p.N117T	.	.	377	13	451	0	.	90
ZNF765	91661	bcgsc.ca	37	19	53911043	53911043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ZNF765	NM_001040185	exon4	c.A235G	p.S79G	.	.	203	7	277	0	.	69
ZNF782	158431	broad.mit.edu	37	9	99580708	99580708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A6-01A-11D-A22F-10	TCGA-DD-A3A6-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f03cb4b-60b1-460c-b761-402e7ca09b0d	a63e3270-347f-4de0-b8f5-494e9b555a9d	.	ZNF782	NM_001001662	exon6	c.C1597T	p.P533S	.	.	142	3	149	0	.	90
