Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC10	89845	broad.mit.edu	37	6	43416622	43416622	+	Silent	SNP	C	C	T	rs148434336	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ABCC10	NM_001198934	exon19	c.C3963T	p.S1321S	.	.	82	4	92	0	C|1.000;G|0.000	96
ABCC11	85320	ucsc.edu;bcgsc.ca	37	16	48242358	48242358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ABCC11	NM_033151	exon11	c.T1658C	p.L553P	.	.	35	4	55	0	.	95
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9630394	9630394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAM17	NM_003183	exon19	c.C2387T	p.T796M	.	.	133	61	153	0	.	659
ADAM22	53616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87780308	87780308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAM22	NM_021722	exon19	c.A1579T	p.I527F	.	.	220	83	314	0	.	230
ADAMTS3	9508	broad.mit.edu;bcgsc.ca	37	4	73176810	73176810	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAMTS3	NM_014243	exon14	c.T2010C	p.C670C	.	.	118	5	167	0	.	651
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73679731	73679731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.A6074G	p.K2025R	.	.	80	33	136	0	.	142
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	73679798	73679798	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.T6141A	p.Y2047X	.	.	86	35	144	0	.	142
ALMS1	7840	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73679628	73679628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.C5971A	p.H1991N	.	.	96	32	123	2	.	142
ANKRD30BL	554226	broad.mit.edu	37	2	132919171	132919171	+	RNA	SNP	A	A	G	rs199695856		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	77	6	107	1	.	.
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	77	5	108	2	.	.
ANKRD36	375248	broad.mit.edu;ucsc.edu	37	2	97869996	97869996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001164315	exon50	c.G3057T	p.R1019S	.	.	58	11	58	0	.	.
ANKRD36BP2	645784	ucsc.edu	37	2	89104364	89104364	+	RNA	SNP	A	A	G	rs75812826		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	44	6	53	3	.	.
ANO9	338440	ucsc.edu	37	11	429580	429580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ANO9	NM_001012302	exon11	c.A905G	p.D302G	.	.	28	4	23	0	.	227
AP1B1	162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29724846	29724846	+	Silent	SNP	G	G	A	rs147684584		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AP1B1	NM_001127	exon23	c.C2814T	p.H938H	.	.	35	16	52	0	G|1.000;A|0.000	92
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21251239	21251240	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	APOB	NM_000384	exon13	c.1789_1790insT	p.I597fs	.	.	119	48	157	0	.	175
AQPEP	0	broad.mit.edu	37	5	115336157	115336157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_173800	exon8	c.T1543C	p.C515R	.	.	258	4	240	0	.	.
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111927941	111927941	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ARHGEF7	NM_001113511	exon13	c.C1398A	p.I466I	.	.	118	32	117	0	.	232
ASAP1	50807	broad.mit.edu	37	8	131072997	131072997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ASAP1	NM_018482	exon28	c.T3020C	p.V1007A	.	.	445	8	262	1	.	95
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9508603	9508603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ASAP2	NM_001135191	exon16	c.G1511A	p.C504Y	.	.	78	30	86	0	.	90
ASTN1	460	broad.mit.edu	37	1	177000055	177000055	+	Missense_Mutation	SNP	T	T	C	rs200275752		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ASTN1	NM_004319	exon4	c.A899G	p.K300R	.	.	173	4	123	0	T|1.000;C|0.000	319
ASTN1	460	broad.mit.edu	37	1	177030242	177030242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ASTN1	NM_004319	exon2	c.A443G	p.E148G	.	.	279	7	203	1	.	319
ATP1A2	477	broad.mit.edu	37	1	160099992	160099992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ATP1A2	NM_000702	exon12	c.A1562G	p.Q521R	.	.	139	4	86	0	.	518
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70228060	70228060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AUTS2	NM_001127231	exon7	c.G947A	p.R316Q	.	.	67	11	66	0	.	92
AZIN1	51582	ucsc.edu	37	8	103840822	103840822	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AZIN1	NM_015878	exon13	c.A1320G	p.Q440Q	.	.	194	1	91	0	.	90
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32206014	32206014	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BAI2	NM_001703	exon12	c.C1923T	p.D641D	.	.	65	22	88	0	.	526
BBS9	27241	broad.mit.edu;bcgsc.ca	37	7	33192464	33192464	+	Splice_Site	SNP	G	G	A	rs137962929		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BBS9	NM_198428	exon3	c.263+1G>A	.	.	.	103	5	47	0	G|1.000;A|0.000	230
BECN1	8678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40962923	40962923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BECN1	NM_003766	exon12	c.T1208C	p.I403T	.	.	47	32	43	0	.	228
BMP3	651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	81967179	81967179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BMP3	NM_001201	exon2	c.A604G	p.I202V	.	.	47	23	76	0	.	518
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15367957	15367957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BRD4	NM_058243	exon8	c.A1369T	p.M457L	.	.	25	8	30	0	.	767
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40627715	40627715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BRWD1	NM_018963	exon19	c.A2111G	p.N704S	.	.	30	7	85	0	.	94
C10orf118	55088	bcgsc.ca	37	10	115896959	115896959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C10orf118	NM_018017	exon7	c.A1312G	p.I438V	.	.	79	4	72	0	.	92
C10orf120	399814	bcgsc.ca	37	10	124457951	124457951	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C10orf120	NM_001010912	exon3	c.A306G	p.Q102Q	.	.	195	7	215	0	.	91
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5108602	5108602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C16orf89	NM_001098514	exon4	c.C519G	p.S173R	.	.	28	9	20	0	.	92
C17orf112	100506650	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	51063875	51063875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001243552	exon2	c.G119T	p.G40V	.	.	250	60	189	0	.	.
C5	727	broad.mit.edu	37	9	123782451	123782451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C5	NM_001735	exon12	c.A1309G	p.T437A	.	.	106	4	128	0	.	92
C6	729	hgsc.bcm.edu	37	5	41181559	41181560	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C6	NM_001115131	exon7	c.829_830insG	p.S277fs	.	.	212	21	180	0	.	95
C6orf15	29113	broad.mit.edu	37	6	31079722	31079722	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C6orf15	NM_014070	exon2	c.C414T	p.L138L	.	.	76	4	122	0	.	90
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24564464	24564464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CABIN1	NM_001199281	exon33	c.A5732G	p.H1911R	.	.	23	19	96	0	.	94
CAMK2B	816	bcgsc.ca	37	7	44279230	44279230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CAMK2B	NM_172082	exon13	c.T979C	p.S327P	.	.	51	4	47	0	.	334
CASP8AP2	9994	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90562907	90562907	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CASP8AP2	NM_001137667	exon3	c.T78C	p.D26D	.	.	167	72	126	1	.	24
CCDC141	285025	broad.mit.edu	37	2	179751541	179751541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CCDC141	NM_173648	exon10	c.T1465C	p.S489P	.	.	400	6	349	0	.	78
CCDC68	80323	bcgsc.ca	37	18	52586561	52586561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CCDC68	NM_025214	exon9	c.T730C	p.S244P	.	.	56	5	60	1	.	91
CCSER1	401145	bcgsc.ca	37	4	91230449	91230449	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001145065	exon2	c.G1014A	p.P338P	.	.	123	5	203	0	.	.
CD109	135228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74492373	74492373	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CD109	NM_133493	exon18	c.2000delA	p.E667fs	.	.	83	30	123	0	.	155
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	31294184	31294184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CDH6	NM_004932	exon3	c.G344A	p.R115K	.	.	143	12	112	0	.	159
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42224926	42224926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CEACAM5	NM_004363	exon8	c.C1856T	p.S619F	.	.	161	71	189	0	.	92
CELSR1	9620	hgsc.bcm.edu;bcgsc.ca	37	22	46807621	46807621	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CELSR1	NM_014246	exon6	c.G4647A	p.P1549P	.	.	39	13	57	0	.	525
CENPF	1063	broad.mit.edu	37	1	214826272	214826272	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CENPF	NM_016343	exon16	c.A8262G	p.E2754E	.	.	343	5	191	0	.	567
CEP350	9857	broad.mit.edu	37	1	179989815	179989815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CEP350	NM_014810	exon12	c.A2906G	p.D969G	.	.	270	5	183	0	.	26
CKAP5	9793	broad.mit.edu	37	11	46784553	46784553	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CKAP5	NM_001008938	exon30	c.T3864C	p.S1288S	.	.	120	4	114	0	.	92
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71043463	71043463	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CLEC4F	NM_173535	exon4	c.C1050T	p.G350G	.	.	179	69	213	0	.	95
CLMN	79789	broad.mit.edu	37	14	95669653	95669653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CLMN	NM_024734	exon9	c.A2033G	p.D678G	.	.	43	4	102	1	.	90
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51098538	51098538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	COBL	NM_015198	exon9	c.C1475G	p.T492S	.	.	201	54	191	0	.	95
COL7A1	1294	ucsc.edu;bcgsc.ca	37	3	48606275	48606275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	COL7A1	NM_000094	exon103	c.A7700G	p.E2567G	.	.	44	4	43	0	.	160
CR2	1380	broad.mit.edu	37	1	207646285	207646285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CR2	NM_001006658	exon10	c.A1739G	p.D580G	.	.	171	4	96	0	.	232
CSPG4	1464	ucsc.edu	37	15	75981976	75981976	+	Missense_Mutation	SNP	C	C	T	rs200493777		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CSPG4	NM_001897	exon3	c.G1430A	p.R477H	.	.	80	10	109	3	C|0.999;T|0.001	229
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156727773	156727773	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CYFIP2	NM_001037332	exon6	c.C438G	p.A146A	.	.	133	86	112	0	.	22
DHRS4	10901	broad.mit.edu	37	14	24424414	24424414	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DHRS4	NM_021004	exon2	c.T299G	p.V100G	.	.	58	7	56	8	.	91
DIXDC1	85458	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111851539	111851539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DIXDC1	.	.	.	.	.	.	73	34	114	0	.	91
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	51839582	51839582	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DMXL2	NM_001174117	exon7	c.G591A	p.W197X	.	.	67	14	72	0	.	99
DNAH7	56171	broad.mit.edu	37	2	196729292	196729292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNAH7	NM_018897	exon41	c.T7087C	p.F2363L	.	.	355	4	202	0	.	102
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196682482	196682482	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNAH7	NM_018897	exon50	c.A9363G	p.Q3121Q	.	.	135	42	84	0	.	102
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6579425	6579425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNHD1	NM_144666	exon25	c.C8900T	p.P2967L	.	.	45	16	61	0	.	24
DOCK3	1795	bcgsc.ca	37	3	51412020	51412020	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DOCK3	NM_004947	exon50	c.5412+2T>C	.	.	.	52	4	90	0	.	22
DOCK9	23348	bcgsc.ca	37	13	99520555	99520555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DOCK9	NM_001130049	exon28	c.T3023C	p.I1008T	.	.	115	5	104	0	.	90
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65178248	65178248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DSEL	NM_032160	exon2	c.A3628T	p.T1210S	.	.	104	36	140	0	.	157
E2F5	1875	bcgsc.ca	37	8	86126008	86126008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	E2F5	NM_001951	exon8	c.T952C	p.S318P	.	.	89	4	119	1	.	415
EDEM3	80267	broad.mit.edu	37	1	184686028	184686028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EDEM3	NM_025191	exon13	c.A1364G	p.E455G	.	.	436	8	297	2	.	91
EMCN	51705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	101331438	101331438	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EMCN	NM_016242	exon12	c.825+1G>A	.	.	.	55	26	98	0	.	90
EP400	57634	broad.mit.edu	37	12	132528257	132528257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EP400	NM_015409	exon34	c.A6434G	p.K2145R	.	.	287	7	182	0	.	520
ETF1	2107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137844022	137844022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ETF1	NM_004730	exon11	c.A1286T	p.D429V	.	.	77	14	60	0	.	229
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5578055	5578055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EVC2	NM_147127	exon18	c.G3184T	p.G1062W	.	.	55	6	79	0	.	155
EXOSC10	5394	broad.mit.edu	37	1	11129717	11129717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EXOSC10	NM_001001998	exon22	c.A2387G	p.K796R	.	.	220	6	294	1	.	116
FAHD2A	51011	broad.mit.edu	37	2	96071367	96071367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FAHD2A	NM_016044	exon2	c.T61C	p.F21L	.	.	220	7	257	0	.	91
FAM104A	84923	bcgsc.ca	37	17	71205687	71205687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001098832	exon4	c.G605A	p.R202Q	.	.	49	4	30	0	.	.
FAM122A	116224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71395649	71395649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FAM122A	NM_138333	exon1	c.C569A	p.P190H	.	.	118	49	155	0	.	90
FAM135A	57579	bcgsc.ca	37	6	71235128	71235128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FAM135A	NM_001162529	exon13	c.A2341G	p.T781A	.	.	139	5	211	0	.	90
FANCD2	2177	bcgsc.ca	37	3	10081409	10081409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FANCD2	NM_001018115	exon9	c.T575C	p.L192P	.	.	75	4	108	0	.	229
FCGR2B	2213	broad.mit.edu	37	1	161641434	161641434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FCGR2B	NM_001002274	exon3	c.T386C	p.L129P	.	.	259	4	228	1	.	226
FERD3L	222894	bcgsc.ca	37	7	19184768	19184768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FERD3L	NM_152898	exon1	c.A218G	p.D73G	.	.	47	4	45	0	.	153
FMNL3	91010	bcgsc.ca	37	12	50041526	50041526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FMNL3	NM_175736	exon23	c.T2738C	p.V913A	.	.	154	5	114	0	.	228
FNDC3A	22862	bcgsc.ca	37	13	49741383	49741383	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FNDC3A	NM_001079673	exon9	c.A981G	p.G327G	.	.	181	6	177	0	.	278
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535372	169535372	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FOXI1	NM_012188	exon2	c.C894A	p.P298P	.	.	128	29	109	0	.	229
FREM1	158326	broad.mit.edu	37	9	14797583	14797583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FREM1	NM_144966	exon22	c.T3752C	p.I1251T	.	.	114	4	97	0	.	138
GGNBP2	79893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34935776	34935776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GGNBP2	NM_024835	exon8	c.A947T	p.K316M	.	.	197	39	114	0	.	70
GIN1	54826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102440400	102440400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GIN1	NM_017676	exon4	c.A484G	p.I162V	.	.	166	36	151	0	.	92
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134158769	134158769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GLB1L3	NM_001080407	exon7	c.G714A	p.M238I	.	.	28	11	38	0	.	69
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74487222	74487222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GLG1	NM_001145667	exon26	c.C3383T	p.A1128V	.	.	94	39	108	0	.	136
GNA12	2768	broad.mit.edu	37	7	2771288	2771288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GNA12	NM_007353	exon4	c.A673G	p.M225V	.	.	110	4	102	0	.	228
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155823310	155823310	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GON4L	NM_001037533	exon2	c.A262C	p.N88H	.	.	382	33	190	0	.	93
GPATCH8	23131	broad.mit.edu	37	17	42512437	42512437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GPATCH8	NM_001002909	exon5	c.A344G	p.Y115C	.	.	315	4	213	0	.	94
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67346716	67346716	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GPHN	NM_001024218	exon5	c.A354T	p.G118G	.	.	42	29	118	0	.	228
GPR37	2861	bcgsc.ca	37	7	124386900	124386900	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GPR37	NM_005302	exon2	c.T1521C	p.P507P	.	.	103	4	150	0	.	523
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105789505	105789505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRIA4	NM_001077243	exon11	c.A1337G	p.Y446C	.	.	81	32	121	0	.	230
GRIN2D	2906	bcgsc.ca	37	19	48917712	48917712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRIN2D	NM_000836	exon5	c.A1283G	p.D428G	.	.	73	4	39	0	.	156
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965098	42965098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRXCR1	NM_001080476	exon2	c.G574T	p.V192F	.	.	158	34	228	0	.	23
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965111	42965111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRXCR1	NM_001080476	exon2	c.C587T	p.P196L	.	.	155	33	229	0	.	23
GTSF1L	149699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42355239	42355239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GTSF1L	NM_001008901	exon1	c.G96C	p.K32N	.	.	145	37	105	0	.	90
HAUS5	23354	broad.mit.edu	37	19	36106006	36106006	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HAUS5	NM_015302	exon5	c.C282T	p.L94L	.	.	108	4	49	0	.	68
HIST1H2BB	3018	bcgsc.ca	37	6	26043675	26043675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HIST1H2BB	NM_021062	exon1	c.T211C	p.F71L	.	.	125	5	162	0	.	90
HK3	3101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176316669	176316669	+	Missense_Mutation	SNP	G	G	A	rs147991837	byfrequency	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HK3	NM_002115	exon7	c.C707T	p.P236L	.	.	87	11	62	0	G|1.000;A|0.000	294
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176308352	176308352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HK3	NM_002115	exon18	c.C2578A	p.L860M	.	.	84	21	59	0	.	294
HRH3	11255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60791849	60791849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HRH3	NM_007232	exon3	c.C551G	p.P184R	.	.	65	16	68	0	.	90
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152191055	152191055	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HRNR	NM_001009931	exon3	c.G3050C	p.G1017A	.	.	272	23	187	0	.	93
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122931847	122931847	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HSPA8	NM_006597	exon2	c.C186T	p.N62N	.	.	44	6	62	0	.	654
HUWE1	10075	bcgsc.ca	37	X	53654395	53654395	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HUWE1	NM_031407	exon17	c.A1455G	p.T485T	.	.	88	5	94	0	.	280
IGFN1	91156	broad.mit.edu	37	1	201172875	201172875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IGFN1	NM_001164586	exon10	c.A757G	p.M253V	.	.	148	4	93	0	.	71
IL1RAPL1	11141	bcgsc.ca	37	X	29972641	29972641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IL1RAPL1	NM_014271	exon10	c.A1204T	p.N402Y	.	.	53	4	119	0	.	134
IMMP1L	196294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	31482231	31482232	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IMMP1L	NM_144981	exon4	c.136_137insT	p.Q46fs	.	.	285	109	390	0	.	90
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1525069	1525069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001080453	exon23	c.G3013T	p.D1005Y	.	.	47	33	40	0	.	.
IQCA1	79781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237233372	237233372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IQCA1	NM_001270585	exon19	c.G2452A	p.G818S	.	.	80	67	83	1	.	23
IQCF1	132141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51937031	51937031	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IQCF1	NM_152397	exon2	c.T78C	p.H26H	.	.	240	84	296	0	.	91
IQGAP3	128239	broad.mit.edu	37	1	156531699	156531699	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IQGAP3	NM_178229	exon10	c.A972G	p.R324R	.	.	136	4	81	0	.	96
IRAK1	3654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153278076	153278076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IRAK1	NM_001569	exon13	c.A1984G	p.I662V	.	.	59	16	68	0	.	1074
ITGA2	3673	broad.mit.edu	37	5	52337954	52337954	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ITGA2	NM_002203	exon3	c.T198C	p.G66G	.	.	189	7	143	0	.	226
ITIH4	3700	bcgsc.ca	37	3	52857849	52857849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ITIH4	NM_001166449	exon10	c.T1343C	p.L448P	.	.	84	4	111	0	.	46
ITIH6	347365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54800575	54800575	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_198510	exon6	c.A842C	p.E281A	.	.	122	12	136	0	.	.
JAKMIP1	152789	bcgsc.ca	37	4	6064137	6064137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	JAKMIP1	NM_001099433	exon10	c.T1462C	p.F488L	.	.	48	4	65	0	.	292
JMY	133746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78610232	78610232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	JMY	NM_152405	exon9	c.A2217C	p.E739D	.	.	160	70	131	0	.	227
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156234115	156234115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KCNAB1	NM_172160	exon11	c.G922A	p.G308R	.	.	72	34	104	0	.	94
KDM8	79831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27225073	27225073	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_024773	exon3	c.665+1G>C	.	.	.	48	16	59	0	.	.
KIAA0907	22889	broad.mit.edu	37	1	155887350	155887350	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KIAA0907	NM_014949	exon11	c.G1380A	p.Q460Q	.	.	132	3	74	0	.	90
KIF22	3835	broad.mit.edu	37	16	29814926	29814926	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KIF22	NM_007317	exon10	c.C1606G	p.L536V	.	.	48	4	66	0	.	68
KIF26B	55083	broad.mit.edu	37	1	245851162	245851162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KIF26B	NM_018012	exon12	c.C4877T	p.P1626L	.	.	59	4	32	0	.	25
KIR2DL3	3804	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55253485	55253485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KIR2DL3	NM_015868	exon3	c.A130G	p.T44A	.	.	52	46	44	0	.	92
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23207527	23207527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KLHL7	NM_001031710	exon9	c.T1250C	p.L417P	.	.	158	32	127	0	.	90
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46021639	46021639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_198689	exon2	c.C1103T	p.S368F	.	.	30	12	70	0	.	.
KRTAP4-2	85291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39334360	39334360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KRTAP4-2	NM_033062	exon1	c.C57G	p.N19K	.	.	144	38	112	0	.	44
KRTAP4-5	85289	mdanderson.org	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KRTAP4-5	NM_033188	exon1	c.T235A	p.C79S	.	.	42	13	22	0	A|0.354;T|0.646	90
KRTAP4-7	100132476	broad.mit.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_033061	exon1	c.T169C	p.S57P	.	.	68	8	53	0	.	.
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	53	11	45	0	T|0.717;C|0.283	91
KRTAP5-4	387267	broad.mit.edu	37	11	1643252	1643252	+	Silent	SNP	A	A	G	rs190925107	by1000genomes	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001012709	exon1	c.T72C	p.C24C	.	.	51	5	49	1	A|0.950;G|0.050	.
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63419842	63419842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LACTB	NM_171846	exon4	c.T906G	p.I302M	.	.	101	42	131	0	.	90
LCE6A	448835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152816050	152816050	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001128600	exon2	c.C54T	p.S18S	.	.	211	43	164	0	.	.
LGALS4	3960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39297124	39297124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LGALS4	NM_006149	exon4	c.G451A	p.G151R	.	.	76	8	88	0	.	92
LMF1	64788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	904604	904604	+	Missense_Mutation	SNP	G	G	T	rs201312320	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LMF1	NM_022773	exon11	c.C1632A	p.F544L	.	.	34	16	36	0	G|0.998;A|0.002	90
LMO7	4008	bcgsc.ca	37	13	76427384	76427384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LMO7	NM_015842	exon25	c.G3822A	p.M1274I	.	.	52	4	50	0	.	586
LOC100996455	0	bcgsc.ca	37	11	64217575	64217575	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	37	4	40	0	.	.
LRIG3	121227	ucsc.edu	37	12	59313326	59313326	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LRIG3	.	.	.	.	.	.	48	15	45	0	.	229
LRP1B	53353	bcgsc.ca	37	2	141607855	141607855	+	Silent	SNP	T	T	C	rs141156575	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LRP1B	NM_018557	exon29	c.A4755G	p.R1585R	.	.	128	5	146	0	T|1.000;A|0.000	311
LRRK1	79705	broad.mit.edu	37	15	101592100	101592100	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LRRK1	NM_024652	exon24	c.C3624T	p.H1208H	.	.	77	3	134	0	.	602
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	40687370	40687370	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LRRK2	NM_198578	exon21	c.A2713T	p.K905X	.	.	138	101	118	0	.	533
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	29581509	29581509	+	Silent	SNP	C	C	T	rs141824789		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LYZL1	NM_032517	exon3	c.C339T	p.D113D	.	.	89	5	140	0	C|1.000;T|0.000	90
MAP2	4133	broad.mit.edu	37	2	210558977	210558977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MAP2	NM_002374	exon7	c.A2083G	p.I695V	.	.	302	6	187	0	.	591
MB21D1	115004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74161257	74161257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MB21D1	NM_138441	exon1	c.G648T	p.E216D	.	.	56	19	63	0	.	90
MIA3	375056	broad.mit.edu;bcgsc.ca	37	1	222824216	222824216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MIA3	NM_198551	exon11	c.A3880G	p.R1294G	.	.	365	8	227	1	.	98
MICB	4277	ucsc.edu	37	6	31474930	31474930	+	Missense_Mutation	SNP	A	A	G	rs201701343		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MICB	NM_005931	exon4	c.A745G	p.N249D	.	.	89	12	93	7	A|0.999;G|0.001	90
MIR548W	100422923	bcgsc.ca	37	17	61176682	61176682	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	90	15	68	0	.	.
MIR600HG	81571	ucsc.edu;mdanderson.org	37	9	125873680	125873680	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	36	16	42	0	.	.
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49416062	49416062	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MLL2	NM_003482	exon53	c.16412+1G>T	.	.	.	87	18	66	0	.	612
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151970850	151970850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MLL3	NM_170606	exon7	c.C952A	p.Q318K	.	.	334	20	484	0	.	1398
MRC1	4360	broad.mit.edu	37	10	17905586	17905586	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MRC1	NM_002438	exon11	c.T1677C	p.P559P	.	.	227	80	291	1	.	68
MROH5	389690	broad.mit.edu	37	8	142451268	142451268	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	153	4	86	0	.	.
MSX2	4488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	174151962	174151962	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MSX2	NM_002449	exon1	c.G300A	p.E100E	.	.	35	7	39	0	.	90
MYCBP2	23077	bcgsc.ca	37	13	77664360	77664360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYCBP2	NM_015057	exon60	c.A10406G	p.K3469R	.	.	93	4	107	0	.	236
MYCBP2	23077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77740568	77740568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYCBP2	NM_015057	exon41	c.A6236G	p.Y2079C	.	.	168	46	138	1	.	236
MYEF2	50804	bcgsc.ca	37	15	48451113	48451113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYEF2	NM_016132	exon7	c.T724C	p.F242L	.	.	107	5	138	1	.	523
MYO16	23026	bcgsc.ca	37	13	109438007	109438007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYO16	NM_001198950	exon5	c.G532T	p.D178Y	.	.	61	4	67	0	.	142
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72338583	72338583	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYO9A	NM_006901	exon2	c.A322C	p.R108R	.	.	101	47	105	0	.	93
MYOD1	4654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	17742472	17742472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYOD1	NM_002478	exon2	c.C654A	p.S218R	.	.	40	24	41	0	.	154
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124554	45124554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001146334	exon2	c.C1225T	p.P409S	.	.	79	20	62	0	.	.
NCAPG	64151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17841380	17841380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NCAPG	NM_022346	exon17	c.T2548C	p.Y850H	.	.	77	22	131	0	.	153
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11531	11531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	ENST00000361381	exon1	c.G772A	p.A258T	.	.	15	12	111	0	.	.
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	50048694	50048694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NFATC2	NM_012340	exon9	c.G2632A	p.G878R	.	.	155	11	169	0	.	92
NIPAL1	152519	broad.mit.edu;bcgsc.ca	37	4	48027156	48027156	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NIPAL1	NM_207330	exon2	c.C118T	p.L40L	.	.	108	4	149	0	.	68
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57054706	57054706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NLRC5	NM_032206	exon2	c.C82A	p.L28M	.	.	55	14	73	0	.	159
NMUR1	10316	bcgsc.ca	37	2	232393029	232393029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NMUR1	NM_006056	exon2	c.A703G	p.T235A	.	.	65	4	95	0	.	523
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108064705	108064714	+	Frame_Shift_Del	DEL	ACTCATTTAA	ACTCATTTAA	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	ACTCATTTAA	ACTCATTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NPAT	NM_002519	exon3	c.187_196del	p.63_66del	.	.	201	55	275	0	.	117
NPVF	64111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	25267920	25267920	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NPVF	NM_022150	exon2	c.138+1G>A	.	.	.	245	63	154	0	.	91
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52272522	52272522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NRD1	NM_002525	exon20	c.A2258G	p.N753S	.	.	205	80	288	0	.	90
NUDT10	170685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	51075989	51075989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUDT10	NM_153183	exon2	c.C172A	p.P58T	.	.	48	37	51	0	.	90
NUFIP2	57532	broad.mit.edu	37	17	27620895	27620895	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUFIP2	NM_020772	exon1	c.A183G	p.G61G	.	.	544	8	388	1	.	138
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229636533	229636533	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUP133	NM_018230	exon4	c.T483C	p.S161S	.	.	102	22	41	0	.	271
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102332620	102332620	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NXF3	NM_022052	exon18	c.C1506G	p.T502T	.	.	38	30	62	0	.	205
ODF2L	57489	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86814445	86814445	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ODF2L	NM_001184765	exon17	c.A1851C	p.T617T	.	.	172	70	215	1	.	69
OR2W3	343171	ucsc.edu	37	1	248059476	248059476	+	Missense_Mutation	SNP	C	C	T	rs12139390	byfrequency;alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR2W3	NM_001001957	exon1	c.A588T	p.E196D	.	.	148	59	199	2	C|0.617;A|0.383	115
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	56000436	56000441	+	In_Frame_Del	DEL	AGAGGT	AGAGGT	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AGAGGT	AGAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR5T2	NM_001004746	exon1	c.221_226del	p.74_76del	.	.	75	19	126	0	.	70
OR5T3	390154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56019970	56019970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR5T3	NM_001004747	exon1	c.T295A	p.L99M	.	.	155	61	284	0	.	68
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158669566	158669566	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR6K2	NM_001005279	exon1	c.C877T	p.L293L	.	.	232	157	194	0	.	69
OR9Q1	219956	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57947370	57947370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR9Q1	NM_001005212	exon3	c.G454T	p.G152C	.	.	150	58	225	1	.	69
OSBPL3	26031	bcgsc.ca	37	7	24880319	24880319	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OSBPL3	NM_015550	exon14	c.A1485G	p.R495R	.	.	127	5	64	0	.	204
OXSM	54995	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25833480	25833480	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OXSM	NM_017897	exon2	c.T969A	p.G323G	.	.	17	6	23	0	.	132
PACS1	55690	bcgsc.ca	37	11	65960970	65960970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PACS1	NM_018026	exon2	c.A370G	p.T124A	.	.	59	5	80	1	.	74
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23646316	23646316	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PALB2	NM_024675	exon4	c.A1551G	p.K517K	.	.	133	58	153	0	.	1351
PARP12	64761	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139756829	139756829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PARP12	NM_022750	exon3	c.A587G	p.K196R	.	.	63	20	78	1	.	525
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164789392	164789392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PBX1	NM_001204963	exon7	c.G1081A	p.A361T	.	.	160	25	153	0	.	659
PCCB	5096	ucsc.edu;bcgsc.ca	37	3	135969390	135969390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCCB	NM_001178014	exon1	c.A173G	p.Q58R	.	.	29	4	46	0	.	90
PCDH19	57526	bcgsc.ca	37	X	99596957	99596957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDH19	NM_001184880	exon5	c.T2792C	p.V931A	.	.	51	4	101	0	.	110
PCDHA13	56136	broad.mit.edu;ucsc.edu	37	5	140263243	140263243	+	Missense_Mutation	SNP	G	G	A	rs139987047		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHA13	NM_031865	exon1	c.G1390A	p.V464M	.	.	32	5	42	0	G|1.000;A|0.000	75
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140187339	140187339	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHA4	NM_031500	exon1	c.A567G	p.V189V	.	.	191	49	171	0	.	96
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140724102	140724102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHGA3	NM_032011	exon1	c.C502A	p.Q168K	.	.	149	34	113	0	.	68
PDE5A	8654	broad.mit.edu	37	4	120481451	120481451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PDE5A	NM_001083	exon7	c.G1199T	p.R400M	.	.	80	3	130	0	.	90
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41957413	41957413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PDZRN4	NM_001164595	exon8	c.A1429G	p.K477E	.	.	98	66	93	0	.	296
PLA2R1	22925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160833798	160833798	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PLA2R1	NM_001195641	exon15	c.A2398C	p.R800R	.	.	170	42	136	1	.	93
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8698371	8698371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PLCB1	NM_015192	exon14	c.A1389T	p.K463N	.	.	47	17	71	0	.	297
PPL	5493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4935181	4935181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PPL	NM_002705	exon22	c.T3475C	p.W1159R	.	.	68	25	117	0	.	95
PRDM15	63977	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43241421	43241421	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRDM15	NM_001040424	exon17	c.2171+2T>G	.	.	.	29	10	74	2	.	90
PRDM5	11107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	121737607	121737607	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRDM5	NM_018699	exon8	c.865+1G>T	.	.	.	85	36	116	0	.	91
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76063257	76063257	+	Missense_Mutation	SNP	T	T	C	rs148924079		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRKRIR	NM_004705	exon5	c.A937G	p.M313V	.	.	347	129	425	0	T|1.000;C|0.000	93
PRMT6	55170	broad.mit.edu	37	1	107599650	107599650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRMT6	NM_018137	exon1	c.G313A	p.A105T	.	.	7	2	21	0	.	90
PRPF38A	84950	broad.mit.edu	37	1	52882339	52882339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRPF38A	NM_032864	exon10	c.A916G	p.K306E	.	.	191	5	212	0	.	90
PTPN13	5783	bcgsc.ca	37	4	87679917	87679917	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PTPN13	NM_080683	exon22	c.T3400C	p.L1134L	.	.	71	4	99	0	.	230
PTPRD	5789	broad.mit.edu	37	9	8449731	8449731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PTPRD	NM_002839	exon34	c.A3982G	p.T1328A	.	.	206	5	235	0	.	912
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7906552	7906552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PTPRM	NM_001105244	exon4	c.A518C	p.D173A	.	.	170	57	202	0	.	228
QPCTL	54814	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46206190	46206190	+	Silent	SNP	G	G	A	rs138046208	byfrequency	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	QPCTL	NM_017659	exon7	c.G1032A	p.T344T	.	.	72	11	88	0	G|0.999;A|0.001	91
RANBP3L	202151	broad.mit.edu	37	5	36255663	36255663	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RANBP3L	NM_001161429	exon12	c.A1008G	p.K336K	.	.	157	4	124	0	.	91
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	86685321	86685321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RASA1	NM_002890	exon24	c.A3037G	p.S1013G	.	.	115	31	101	0	.	661
RAVER2	55225	broad.mit.edu;bcgsc.ca	37	1	65280433	65280433	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RAVER2	NM_018211	exon11	c.C1800T	p.S600S	.	.	49	15	58	1	.	135
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34312495	34312495	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RBM39	NM_184234	exon8	c.A684G	p.S228S	.	.	119	71	94	0	.	91
RC3H1	149041	broad.mit.edu	37	1	173931021	173931021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RC3H1	NM_172071	exon11	c.A2044G	p.T682A	.	.	805	8	355	1	.	92
RECQL4	9401	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145738331	145738331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RECQL4	NM_004260	exon16	c.T2654C	p.L885P	.	.	140	30	92	1	.	1083
REPS2	9185	broad.mit.edu;bcgsc.ca	37	X	17156984	17156984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	REPS2	NM_004726	exon17	c.C1814T	p.S605F	.	.	75	4	114	0	.	131
REREP3	646396	bcgsc.ca	37	15	22546739	22546739	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	45	5	60	0	.	.
RHOBTB3	22836	broad.mit.edu	37	5	95087995	95087995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RHOBTB3	NM_014899	exon5	c.A623G	p.K208R	.	.	508	8	394	0	.	228
RNF175	285533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154649420	154649420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RNF175	NM_173662	exon4	c.G340A	p.V114I	.	.	62	31	82	0	.	47
RNF20	56254	broad.mit.edu	37	9	104302849	104302849	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RNF20	NM_019592	exon4	c.A375G	p.K125K	.	.	37	3	66	1	.	231
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113304627	113304627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RPH3A	NM_001143854	exon7	c.C426G	p.I142M	.	.	60	12	60	0	.	519
SCAMP5	192683	bcgsc.ca	37	15	75310252	75310252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SCAMP5	NM_001178111	exon6	c.T335C	p.F112S	.	.	45	4	72	0	.	23
SCARB1	949	ucsc.edu;bcgsc.ca	37	12	125271992	125271992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SCARB1	NM_005505	exon10	c.A1214G	p.K405R	.	.	45	4	39	0	.	226
SEC24A	10802	broad.mit.edu	37	5	134010389	134010389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SEC24A	NM_001252231	exon5	c.A902G	p.N301S	.	.	449	7	262	0	.	68
SENP6	26054	hgsc.bcm.edu	37	6	76376480	76376481	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SENP6	NM_015571	exon10	c.1047_1048del	p.349_350del	.	.	43	0	70	0	.	660
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	76376479	76376480	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SENP6	NM_015571	exon10	c.1046_1047insTT	p.E349fs	.	.	43	18	70	0	.	660
SERPINB4	6318	broad.mit.edu	37	18	61308151	61308151	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SERPINB4	NM_002974	exon5	c.A426G	p.E142E	.	.	192	5	281	2	.	228
SF3B3	23450	bcgsc.ca	37	16	70597926	70597926	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SF3B3	NM_012426	exon18	c.A2436G	p.K812K	.	.	82	4	86	0	.	91
SIGLEC17P	284367	broad.mit.edu	37	19	51670786	51670786	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	6	2	13	0	.	.
SIN3B	23309	bcgsc.ca	37	19	16987328	16987328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SIN3B	NM_015260	exon17	c.T2894C	p.I965T	.	.	52	4	58	0	.	228
SIRT3	23410	bcgsc.ca	37	11	230496	230496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SIRT3	NM_012239	exon4	c.A763G	p.T255A	.	.	56	4	75	0	.	650
SLC10A1	6554	bcgsc.ca	37	14	70263832	70263832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC10A1	NM_003049	exon1	c.T41C	p.L14P	.	.	50	4	123	2	.	91
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	982779	982779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC26A1	NM_022042	exon3	c.A1948C	p.S650R	.	.	45	16	46	0	.	91
SLC29A2	3177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66135010	66135010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC29A2	NM_001532	exon7	c.C658T	p.R220C	.	.	84	30	97	0	.	91
SLC2A2	6514	broad.mit.edu	37	3	170724949	170724949	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC2A2	NM_000340	exon5	c.T600C	p.I200I	.	.	79	3	104	0	.	515
SLC30A8	169026	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118169990	118169990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC30A8	NM_173851	exon4	c.A479G	p.Y160C	.	.	319	58	245	2	.	229
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18250660	18250660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC39A12	NM_152725	exon3	c.A412G	p.K138E	.	.	138	60	175	1	.	154
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162799343	162799343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC4A10	NM_001178015	exon16	c.T2039G	p.L680W	.	.	61	23	34	0	.	229
SLFN5	162394	broad.mit.edu	37	17	33592376	33592376	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLFN5	NM_144975	exon5	c.A2145G	p.A715A	.	.	192	5	152	0	.	92
SMARCA1	6594	broad.mit.edu	37	X	128626039	128626039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SMARCA1	NM_003069	exon14	c.G1694A	p.S565N	.	.	101	3	173	1	.	230
SMG6	23293	bcgsc.ca	37	17	2186028	2186028	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SMG6	NM_017575	exon8	c.T2574C	p.H858H	.	.	71	4	165	3	.	228
SOS2	6655	bcgsc.ca	37	14	50649302	50649302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SOS2	NM_006939	exon6	c.A737G	p.N246S	.	.	75	4	70	0	.	849
SPATA31D5P	347127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84528459	84528459	+	RNA	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	67	19	139	0	.	.
SRSF4	6429	bcgsc.ca	37	1	29481328	29481328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SRSF4	NM_005626	exon4	c.T458C	p.M153T	.	.	160	7	142	0	.	226
SSX3	10214	broad.mit.edu	37	X	48213487	48213487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SSX3	NM_021014	exon4	c.T227C	p.V76A	.	.	209	6	260	1	.	130
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33681023	33681023	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	STARD13	NM_178006	exon13	c.C3096G	p.L1032L	.	.	60	15	99	0	.	94
STX16	8675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57251326	57251326	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	STX16	NM_001001433	exon9	c.C957T	p.L319L	.	.	202	54	195	0	.	91
SYNE2	23224	bcgsc.ca	37	14	64606771	64606771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SYNE2	NM_182914	exon80	c.A14956G	p.S4986G	.	.	81	4	71	0	.	164
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8006438	8006438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TAF3	NM_031923	exon3	c.A965G	p.K322R	.	.	42	18	47	0	.	69
TANGO6	79613	broad.mit.edu	37	16	68953097	68953097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_024562	exon12	c.C2102T	p.A701V	.	.	54	4	59	0	.	.
TAS2R38	5726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141672569	141672569	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TAS2R38	NM_176817	exon1	c.T921A	p.A307A	.	.	67	23	98	0	.	92
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167420042	167420042	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001122679	exon5	c.C1041G	p.P347P	.	.	122	52	128	0	.	.
TLE3	7090	broad.mit.edu;bcgsc.ca	37	15	70343755	70343755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TLE3	NM_005078	exon19	c.C2186T	p.T729M	.	.	60	4	93	0	.	522
TM4SF19-TCTEX1D2	0	ucsc.edu	37	3	196051367	196051367	+	RNA	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	84	30	80	0	.	.
TMEM132B	114795	broad.mit.edu	37	12	125834041	125834041	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TMEM132B	NM_052907	exon2	c.C96T	p.S32S	.	.	219	5	167	1	.	185
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578525	7578525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	TP53,NS,carcinoma,-1	TP53	NM_000546	exon5	c.C405A	p.C135X	.	.	22	16	38	0	.	70225
TPPP3	51673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67424967	67424967	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TPPP3	NM_016140	exon3	c.G48A	p.K16K	.	.	57	13	68	0	.	90
TRAPPC3	27095	bcgsc.ca	37	1	36605676	36605676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TRAPPC3	NM_001270894	exon2	c.A134G	p.D45G	.	.	168	5	166	0	.	90
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560596	179560596	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TTN	NM_001267550	exon114	c.T31203C	p.Y10401Y	.	.	338	77	253	0	.	636
TUBA3C	7278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	19748160	19748160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TUBA3C	NM_006001	exon5	c.A1196G	p.Y399C	.	.	108	34	94	1	.	95
TUBA4B	80086	broad.mit.edu;ucsc.edu	37	2	220135019	220135019	+	RNA	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	14	6	12	0	.	.
UBA2	10054	broad.mit.edu	37	19	34951461	34951461	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	UBA2	NM_005499	exon14	c.A1488G	p.G496G	.	.	476	7	230	0	.	227
USP35	57558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77920573	77920573	+	Missense_Mutation	SNP	C	C	A	rs202205531	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	USP35	NM_020798	exon10	c.C1672A	p.P558T	.	.	93	38	96	0	C|0.999;T|0.001	637
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6973284	6973284	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	USP5	NM_001098536	exon17	c.T2169G	p.P723P	.	.	21	14	73	0	.	659
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27734780	27734780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WASF2	NM_006990	exon9	c.A1400G	p.N467S	.	.	88	35	119	0	.	228
WBP1	23559	broad.mit.edu	37	2	74686833	74686833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WBP1	NM_012477	exon2	c.G133A	p.G45R	.	.	80	3	112	0	.	90
WDFY2	115825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52301872	52301872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WDFY2	NM_052950	exon6	c.C544A	p.L182I	.	.	62	14	64	0	.	90
XAGE5	170627	broad.mit.edu	37	X	52841663	52841663	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	XAGE5	NM_130775	exon2	c.72+1G>C	.	.	.	59	4	83	0	.	131
XPO5	57510	bcgsc.ca	37	6	43538690	43538690	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	XPO5	NM_020750	exon4	c.T342C	p.D114D	.	.	74	5	82	0	.	271
XPOT	11260	broad.mit.edu;bcgsc.ca	37	12	64818816	64818816	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	XPOT	NM_007235	exon13	c.1308-2A>G	.	.	.	217	7	112	1	.	652
YWHAE	7531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1264424	1264424	+	Missense_Mutation	SNP	G	G	T	rs148760302	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	YWHAE	NM_006761	exon4	c.C540A	p.F180L	.	.	49	35	104	0	G|1.000;A|0.000	659
ZFP37	7539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	115805121	115805121	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZFP37	NM_003408	exon4	c.C1777T	p.R593X	.	.	102	39	126	0	.	92
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	123963936	123963936	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZHX2	NM_014943	exon3	c.G186A	p.E62E	.	.	82	16	62	0	.	227
ZNF143	7702	bcgsc.ca	37	11	9494249	9494249	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZNF143	NM_003442	exon3	c.A138G	p.E46E	.	.	71	4	57	0	.	90
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44681511	44681511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001032372	exon6	c.A2096G	p.Y699C	.	.	89	44	115	0	.	.
ZNF44	51710	broad.mit.edu	37	19	12384278	12384278	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZNF44	NM_001164276	exon5	c.T936C	p.D312D	.	.	164	4	134	0	.	23
ZNF646	9726	bcgsc.ca	37	16	31089954	31089954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZNF646	NM_014699	exon2	c.A2309G	p.D770G	.	.	77	4	82	0	.	153
ZNF717	100131827	broad.mit.edu	37	3	75788153	75788153	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001128223	exon5	c.G621A	p.Q207Q	.	.	44	3	57	0	.	.
ZNF786	136051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148767724	148767724	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZNF786	NM_152411	exon4	c.C2140A	p.R714R	.	.	120	47	108	1	.	50
CCAR1	55749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70508892	70508893	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	.	.	.	.	.	
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14631250	14631251	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	.	.	.	.	.	.	.	
SENP6	26054	hgsc.bcm.edu;bcgsc.ca	37	6	76376480	76376481	+	Missense_Mutation	DNP	AA	AA	TC	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	p.ES349DR	.	.	.	.	.	.	.	
