Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66920897	66920897	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ABCA8	NM_007168	exon10	c.T1387G	p.F463V	.	.	92	32	69	0	.	93
ADAMTS18	170692	broad.mit.edu	37	16	77325228	77325228	+	Missense_Mutation	SNP	G	G	A	rs148910905		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ADAMTS18	NM_199355	exon21	c.C3337T	p.R1113W	.	.	116	3	107	0	G|1.000;A|0.000	1036
ADI1	55256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3504718	3504718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ADI1	NM_018269	exon3	c.G287T	p.R96L	.	.	66	32	62	0	.	91
AGT	183	broad.mit.edu	37	1	230845963	230845963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	AGT	NM_000029	exon2	c.T634C	p.F212L	.	.	92	4	50	0	.	226
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414676	105414676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	AHNAK2	NM_138420	exon7	c.C7112T	p.P2371L	.	.	104	34	87	0	.	47
AKAP5	9495	broad.mit.edu	37	14	64936339	64936339	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	AKAP5	NM_004857	exon2	c.A1227G	p.E409E	.	.	193	5	181	0	.	226
ALDOA	226	broad.mit.edu	37	16	30078353	30078353	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ALDOA	NM_001243177	exon2	c.A135G	p.L45L	.	.	185	4	131	1	.	226
ALMS1	7840	bcgsc.ca	37	2	73784386	73784386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ALMS1	NM_015120	exon14	c.T10115C	p.L3372P	.	.	299	7	257	1	.	142
ALOX12B	242	broad.mit.edu	37	17	7976106	7976106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ALOX12B	NM_001139	exon15	c.A2089G	p.N697D	.	.	99	4	118	0	.	226
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91936908	91936908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ANKIB1	NM_019004	exon3	c.G424C	p.D142H	.	.	49	22	38	0	.	432
ANKRD10	55608	broad.mit.edu	37	13	111532258	111532258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ANKRD10	NM_017664	exon6	c.G989A	p.G330E	.	.	121	3	104	0	.	226
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73990739	73990739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ANKRD17	NM_032217	exon18	c.A3383G	p.H1128R	.	.	115	43	114	0	.	234
ANKRD18B	441459	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33548483	33548483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001244752	exon9	c.A1508G	p.D503G	.	.	170	36	162	1	.	.
ANTXR2	118429	broad.mit.edu	37	4	80899267	80899267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ANTXR2	NM_001145794	exon15	c.C1241T	p.A414V	.	.	260	3	194	0	.	23
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	112111380	112111380	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	APC	NM_001127511	exon4	c.C507G	p.Y169X	.	.	88	61	132	0	.	12026
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17942680	17942680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ARHGEF10L	NM_018125	exon9	c.A818G	p.H273R	.	.	139	51	98	0	.	292
ARHGEF6	9459	bcgsc.ca	37	X	135789147	135789147	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ARHGEF6	NM_004840	exon9	c.T966C	p.S322S	.	.	47	4	39	0	.	227
ASMT	438	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	1752180	1752180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ASMT	NM_001171038	exon7	c.G784A	p.E262K	.	.	483	106	425	2	.	40
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	124382175	124382175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATAD2	NM_014109	exon7	c.G817C	p.D273H	.	.	315	18	134	0	.	92
ATAD5	79915	broad.mit.edu	37	17	29187524	29187524	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATAD5	NM_024857	exon10	c.A3030G	p.R1010R	.	.	233	4	233	0	.	93
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26026303	26026303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATP10A	NM_024490	exon2	c.T517C	p.C173R	.	.	55	11	86	0	.	139
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142275233	142275233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATR	NM_001184	exon9	c.G2070C	p.K690N	.	.	134	43	146	0	.	1139
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	111951212	111951212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATXN2	NM_002973	exon11	c.G1987A	p.V663I	.	.	142	6	136	0	.	136
B4GALNT4	338707	broad.mit.edu	37	11	380010	380010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	B4GALNT4	NM_178537	exon16	c.G2633A	p.R878H	.	.	7	5	14	0	.	91
BCHE	590	broad.mit.edu	37	3	165548101	165548101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BCHE	NM_000055	exon2	c.A721G	p.S241G	.	.	189	5	170	0	.	94
BCL9L	283149	bcgsc.ca	37	11	118770781	118770781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BCL9L	NM_182557	exon7	c.T3251C	p.L1084P	.	.	134	5	116	3	.	229
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70766253	70766253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BDP1	NM_018429	exon7	c.G951T	p.M317I	.	.	302	66	427	0	.	92
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	79832589	79832589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BMP2K	NM_198892	exon16	c.C2888T	p.T963M	.	.	289	27	239	0	.	383
BNC1	646	broad.mit.edu	37	15	83931882	83931882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BNC1	NM_001717	exon4	c.T2121C	p.G707G	.	.	154	4	124	0	.	93
BPNT1	10380	ucsc.edu	37	1	220231338	220231338	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BPNT1	.	.	.	.	.	.	104	1	77	1	.	91
BPNT1	10380	ucsc.edu	37	1	220232066	220232066	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BPNT1	.	.	.	.	.	.	35	1	25	0	.	91
BTRC	8945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103310572	103310573	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BTRC	NM_033637	exon14	c.1773_1774insC	p.E591fs	.	.	167	58	142	0	.	659
BYSL	705	broad.mit.edu	37	6	41900182	41900182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BYSL	NM_004053	exon7	c.C1052T	p.A351V	.	.	72	3	45	1	.	90
C17orf107	100130311	ucsc.edu	37	17	4803732	4803732	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001145536	exon3	c.T477C	p.G159G	.	.	36	4	22	0	.	.
C2orf48	348738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10350626	10350626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	C2orf48	NM_182626	exon3	c.C383T	p.A128V	.	.	114	58	98	0	.	90
CA4	762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58233977	58233977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CA4	NM_000717	exon3	c.G169A	p.V57I	.	.	74	20	62	0	.	226
CABP7	164633	bcgsc.ca	37	22	30123664	30123664	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CABP7	NM_182527	exon2	c.C123T	p.A41A	.	.	44	4	43	0	.	90
CACNA1F	778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49062154	49062154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CACNA1F	NM_005183	exon47	c.C5625A	p.F1875L	.	.	78	43	64	1	.	176
CCL1	6346	bcgsc.ca	37	17	32688820	32688820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CCL1	NM_002981	exon2	c.T172C	p.S58P	.	.	132	7	80	1	.	90
CDH1	999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68845609	68845609	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CDH1	NM_004360	exon7	c.A855G	p.T285T	.	.	58	9	48	0	.	3377
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85970872	85970872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CDHR1	NM_001171971	exon13	c.C1436A	p.A479D	.	.	58	20	41	0	.	91
CDS1	1040	bcgsc.ca	37	4	85564208	85564208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CDS1	NM_001263	exon11	c.A1064G	p.H355R	.	.	96	4	82	0	.	155
CEACAM1	634	broad.mit.edu	37	19	43031414	43031414	+	Missense_Mutation	SNP	T	T	C	rs147100915		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CEACAM1	NM_001184816	exon2	c.A203G	p.Y68C	.	.	311	4	268	2	T|1.000;C|0.000	515
CEP135	9662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	56831901	56831901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CEP135	NM_025009	exon8	c.A920C	p.N307T	.	.	157	12	139	1	.	94
CEP97	79598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101445524	101445524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CEP97	NM_024548	exon2	c.G130T	p.D44Y	.	.	77	18	61	0	.	70
CHD1	1105	broad.mit.edu	37	5	98195768	98195768	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CHD1	NM_001270	exon32	c.C4432T	p.L1478L	.	.	162	5	230	0	.	274
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	40049297	40049297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CHD6	NM_032221	exon31	c.A5978T	p.H1993L	.	.	186	12	186	0	.	238
CHD8	57680	broad.mit.edu	37	14	21870234	21870234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CHD8	NM_001170629	exon19	c.T3944C	p.I1315T	.	.	138	4	117	0	.	277
CLCA2	9635	broad.mit.edu;bcgsc.ca	37	1	86920923	86920923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CLCA2	NM_006536	exon14	c.G2545A	p.E849K	.	.	175	6	157	1	.	155
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	X	107910381	107910381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	COL4A5	NM_000495	exon40	c.A3572G	p.N1191S	.	.	149	6	111	1	.	133
COL6A6	131873	broad.mit.edu	37	3	130292964	130292964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	COL6A6	NM_001102608	exon7	c.T3142C	p.Y1048H	.	.	214	4	191	0	.	76
COL7A1	1294	broad.mit.edu	37	3	48629618	48629618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	COL7A1	NM_000094	exon9	c.A1157G	p.E386G	.	.	133	5	103	1	.	160
COL9A2	1298	bcgsc.ca	37	1	40770005	40770005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	COL9A2	NM_001852	exon24	c.T1274C	p.V425A	.	.	68	4	70	0	.	92
CPED1	79974	bcgsc.ca	37	7	120740144	120740144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001105533	exon6	c.T914C	p.V305A	.	.	65	4	73	0	.	.
CPZ	8532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8621092	8621092	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CPZ	NM_001014447	exon11	c.C1707T	p.A569A	.	.	193	76	172	0	.	93
CREB3L3	84699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4159733	4159733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CREB3L3	NM_001271997	exon4	c.A530G	p.N177S	.	.	14	6	25	0	.	92
CREBBP	1387	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3807292	3807292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CREBBP	NM_004380	exon19	c.A3695G	p.N1232S	.	.	141	52	163	1	.	1807
CSPG5	10675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47618819	47618819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CSPG5	NM_006574	exon2	c.G697C	p.G233R	.	.	85	26	67	0	.	91
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	69299302	69299302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CTNNA3	NM_001127384	exon4	c.G418C	p.D140H	.	.	186	18	135	0	.	234
CYTH1	9267	broad.mit.edu	37	17	76676296	76676296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CYTH1	NM_004762	exon12	c.A1094G	p.K365R	.	.	106	4	113	0	.	228
DAGLA	747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61496465	61496465	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DAGLA	NM_006133	exon8	c.C834A	p.L278L	.	.	167	18	143	0	.	92
DCK	1633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71889378	71889378	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DCK	NM_000788	exon4	c.A504G	p.Q168Q	.	.	229	22	170	0	.	116
DDB1	1642	broad.mit.edu	37	11	61081038	61081038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DDB1	NM_001923	exon16	c.T2002C	p.F668L	.	.	180	4	174	1	.	661
DDX12P	440081	bcgsc.ca	37	12	9571051	9571051	+	RNA	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	59	10	61	0	.	.
DDX24	57062	bcgsc.ca	37	14	94528684	94528684	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DDX24	NM_020414	exon3	c.C1002T	p.D334D	.	.	166	6	134	1	.	228
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44609640	44609640	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DDX56	NM_019082	exon8	c.T1098A	p.P366P	.	.	64	20	75	0	.	227
DEAF1	10522	broad.mit.edu	37	11	674743	674743	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DEAF1	NM_021008	exon10	c.T1296C	p.T432T	.	.	61	3	49	0	.	90
DENND2C	163259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115143496	115143496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DENND2C	NM_001256404	exon14	c.C1901A	p.P634Q	.	.	95	27	112	0	.	229
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84832627	84832627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DNAH6	NM_001370	exon20	c.G3085A	p.E1029K	.	.	132	40	122	0	.	69
DNAH7	56171	broad.mit.edu	37	2	196718114	196718114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DNAH7	NM_018897	exon46	c.T8734C	p.S2912P	.	.	194	5	142	4	.	102
DNAH7	56171	broad.mit.edu	37	2	196877542	196877542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DNAH7	NM_018897	exon10	c.A958G	p.M320V	.	.	253	5	211	0	.	102
DOCK6	57572	bcgsc.ca	37	19	11311141	11311141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DOCK6	NM_020812	exon47	c.G5944A	p.E1982K	.	.	58	4	86	0	.	93
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97564053	97564053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DPYD	NM_000110	exon21	c.A2758G	p.T920A	.	.	160	40	148	0	.	278
DST	667	broad.mit.edu	37	6	56480534	56480534	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DST	NM_001723	exon24	c.A7731G	p.E2577E	.	.	236	5	175	1	.	523
DUSP5	1847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112262621	112262621	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DUSP5	NM_004419	exon2	c.T522C	p.Y174Y	.	.	104	40	93	0	.	659
DYRK3	8444	broad.mit.edu	37	1	206822195	206822195	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DYRK3	NM_003582	exon3	c.T1652A	p.L551X	.	.	145	6	76	0	.	333
ECH1	1891	broad.mit.edu	37	19	39307998	39307998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ECH1	NM_001398	exon5	c.A481G	p.K161E	.	.	59	3	51	0	.	91
EFHA2	286097	ucsc.edu;bcgsc.ca	37	8	16956032	16956032	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EFHA2	NM_181723	exon9	c.A954G	p.T318T	.	.	38	4	53	0	.	91
EID2	163126	bcgsc.ca	37	19	40030032	40030032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EID2	NM_153232	exon1	c.G688A	p.D230N	.	.	58	4	58	0	.	90
EIF4E1B	253314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070692	176070692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001099408	exon5	c.C253G	p.L85V	.	.	83	42	73	0	.	.
EIF5B	9669	broad.mit.edu;bcgsc.ca	37	2	99993066	99993066	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EIF5B	NM_015904	exon10	c.A1809G	p.E603E	.	.	171	5	177	0	.	93
ENTPD1	953	broad.mit.edu	37	10	97604282	97604282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ENTPD1	NM_001164178	exon5	c.A499G	p.S167G	.	.	123	4	95	0	.	93
ESM1	11082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54281083	54281083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ESM1	NM_001135604	exon1	c.G263T	p.G88V	.	.	85	16	79	0	.	90
EXOC1	55763	broad.mit.edu	37	4	56744085	56744085	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EXOC1	NM_018261	exon9	c.T1077C	p.G359G	.	.	97	5	63	0	.	950
EYA2	2139	bcgsc.ca	37	20	45702888	45702888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EYA2	NM_172110	exon7	c.T575C	p.I192T	.	.	62	5	57	0	.	523
EYS	346007	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	65767615	65767615	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EYS	NM_001142800	exon13	c.C2029T	p.Q677X	.	.	224	61	145	1	.	660
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64431532	64431532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EYS	NM_001142800	exon43	c.C8395A	p.L2799I	.	.	330	35	229	0	.	660
FAM182A	284800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	26063603	26063603	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	107	19	81	0	.	.
FAM227B	196951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49659729	49659729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_152647	exon13	c.A1187G	p.Y396C	.	.	109	42	96	0	.	.
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163029733	163029733	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FAP	NM_004460	exon25	c.2035-2A>G	.	.	.	205	66	173	0	.	93
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163044766	163044766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FAP	NM_004460	exon20	c.G1727T	p.G576V	.	.	160	61	113	0	.	93
FARP1	10160	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99099038	99099038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FARP1	NM_005766	exon26	c.A3023G	p.Y1008C	.	.	82	30	74	1	.	290
FMN2	56776	broad.mit.edu	37	1	240637435	240637435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FMN2	NM_020066	exon18	c.A5150G	p.K1717R	.	.	487	7	227	0	.	145
FNBP4	23360	broad.mit.edu	37	11	47767923	47767923	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FNBP4	NM_015308	exon7	c.T930C	p.A310A	.	.	114	4	111	0	.	91
FOXM1	2305	broad.mit.edu;bcgsc.ca	37	12	2983189	2983189	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FOXM1	NM_001243089	exon2	c.T456A	p.L152L	.	.	277	9	235	0	.	227
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14784488	14784488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FREM1	NM_144966	exon25	c.A4322G	p.Q1441R	.	.	105	28	106	0	.	138
FSTL4	23105	broad.mit.edu	37	5	132537723	132537723	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FSTL4	NM_015082	exon15	c.A1728G	p.E576E	.	.	51	3	65	0	.	91
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17443765	17443765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GAB4	NM_001037814	exon10	c.C1583A	p.P528Q	.	.	45	17	28	0	.	91
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89583374	89583374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GBP2	NM_004120	exon5	c.A511C	p.S171R	.	.	263	109	260	0	.	91
GEM	2669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	95272587	95272587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GEM	NM_181702	exon2	c.A145G	p.T49A	.	.	164	13	49	0	.	659
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124386785	124386785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GPR37	NM_005302	exon2	c.C1636G	p.P546A	.	.	103	12	88	0	.	523
GRIN3A	116443	broad.mit.edu	37	9	104335643	104335643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GRIN3A	NM_133445	exon9	c.A3161G	p.E1054G	.	.	170	4	164	0	.	96
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66742812	66742812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GRIP1	NM_021150	exon24	c.C3218A	p.T1073N	.	.	283	30	275	0	.	494
GTF2IRD2P1	401375	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	121	4	98	0	T|0.500;G|0.500	.
GUCY2F	2986	broad.mit.edu;bcgsc.ca	37	X	108684675	108684675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GUCY2F	NM_001522	exon7	c.T1606C	p.S536P	.	.	94	4	59	0	.	540
HDAC8	55869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71788678	71788678	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	HDAC8	NM_018486	exon3	c.C221G	p.A74G	.	.	28	17	31	0	.	226
HELZ2	85441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62190680	62190680	+	Silent	SNP	G	G	A	rs141769251		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001037335	exon20	c.C7869T	p.L2623L	.	.	61	19	45	0	G|1.000;A|0.000	.
HERC1	8925	broad.mit.edu	37	15	64021823	64021823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	HERC1	NM_003922	exon15	c.A2894G	p.K965R	.	.	200	5	182	1	.	666
HIRA	7290	broad.mit.edu	37	22	19349296	19349296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	HIRA	NM_003325	exon16	c.G1934A	p.R645Q	.	.	98	4	84	0	.	91
HLX	3142	broad.mit.edu	37	1	221055568	221055568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	HLX	NM_021958	exon3	c.T835C	p.S279P	.	.	133	5	92	1	.	70
HOOK2	29911	bcgsc.ca	37	19	12874364	12874364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	HOOK2	NM_013312	exon22	c.T1988C	p.L663P	.	.	65	4	53	0	.	92
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160491064	160491064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IGF2R	NM_000876	exon31	c.C4417T	p.R1473X	.	.	39	5	66	0	.	118
IGSF3	3321	ucsc.edu	37	1	117142641	117142641	+	Missense_Mutation	SNP	G	G	A	rs76417519	byfrequency	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IGSF3	NM_001542	exon8	c.C2011T	p.R671W	.	.	44	8	38	2	G|0.994;A|0.006	92
IL20RB	53833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136708320	136708320	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IL20RB	NM_144717	exon4	c.T444C	p.D148D	.	.	48	14	49	0	.	91
IPO4	79711	hgsc.bcm.edu;bcgsc.ca	37	14	24654743	24654743	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IPO4	NM_024658	exon13	c.C1200T	p.C400C	.	.	59	29	42	0	.	226
IPO4	79711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24654742	24654743	+	Nonsense_Mutation	INS	-	-	ACAC	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IPO4	NM_024658	exon13	c.1201_1202insGTGT	p.K401_G402delinsVX	.	.	59	27	44	0	.	226
IQGAP3	128239	broad.mit.edu	37	1	156535838	156535838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IQGAP3	NM_178229	exon4	c.C341A	p.A114D	.	.	215	4	111	0	.	96
IRS4	8471	broad.mit.edu	37	X	107976780	107976780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IRS4	NM_003604	exon1	c.A2795G	p.N932S	.	.	119	4	123	0	.	623
ITGB1BP1	9270	broad.mit.edu;bcgsc.ca	37	2	9552533	9552533	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ITGB1BP1	NM_004763	exon4	c.A153G	p.G51G	.	.	40	4	36	0	.	130
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26568361	26568361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ITPR2	NM_002223	exon51	c.C7181G	p.S2394C	.	.	132	37	117	0	.	542
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75233175	75233175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	JPH1	NM_020647	exon1	c.C348A	p.D116E	.	.	59	9	26	0	.	91
KANK1	23189	broad.mit.edu	37	9	711102	711102	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	KANK1	NM_001256876	exon7	c.A336G	p.Q112Q	.	.	60	3	64	0	.	517
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6145274	6145274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	KCNAB2	NM_001199862	exon6	c.G391A	p.V131I	.	.	141	52	84	0	.	514
KCNJ5	3762	broad.mit.edu	37	11	128781337	128781337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	KCNJ5	NM_000890	exon2	c.A169G	p.S57G	.	.	123	4	101	0	.	91
KIAA1522	57648	broad.mit.edu;bcgsc.ca	37	1	33233673	33233673	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	KIAA1522	NM_020888	exon3	c.A417G	p.K139K	.	.	131	5	105	0	.	90
KNTC1	9735	bcgsc.ca	37	12	123064470	123064470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	KNTC1	NM_014708	exon32	c.T2860C	p.S954P	.	.	78	5	58	0	.	543
KPNA1	3836	bcgsc.ca	37	3	122146537	122146537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	KPNA1	NM_002264	exon13	c.A1277G	p.K426R	.	.	67	4	48	0	.	226
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21464744	21464744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	LAMA3	NM_001127717	exon41	c.A5230G	p.T1744A	.	.	204	30	169	0	.	100
LIMK2	3985	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31655931	31655931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	LIMK2	NM_005569	exon5	c.A419G	p.E140G	.	.	29	10	22	1	.	548
LOC283683	0	broad.mit.edu	37	15	23108865	23108865	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	17	4	21	0	.	.
LOC283922	0	broad.mit.edu;bcgsc.ca	37	16	74372735	74372735	+	RNA	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	75	8	58	0	.	.
LOC728554	0	broad.mit.edu	37	5	177309489	177309489	+	RNA	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	736	10	431	1	.	.
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	44109166	44109166	+	Silent	SNP	G	G	T	rs200819355	alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_144612	exon29	c.C4504A	p.R1502R	.	.	227	18	172	0	.	.
LPO	4025	broad.mit.edu	37	17	56342209	56342209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	LPO	NM_006151	exon10	c.C1393T	p.R465C	.	.	165	4	140	0	.	91
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	39906750	39906750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MACF1	NM_012090	exon70	c.G12346A	p.A4116T	.	.	161	11	155	0	.	165
MAGEB18	286514	bcgsc.ca	37	X	26157792	26157792	+	Silent	SNP	C	C	T	rs5944318	byfrequency	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MAGEB18	NM_173699	exon2	c.C690T	p.A230A	.	.	96	4	83	0	C|0.368;T|0.632	130
MAP7D2	256714	bcgsc.ca	37	X	20043081	20043081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MAP7D2	NM_001168465	exon10	c.A1400G	p.E467G	.	.	97	5	84	1	.	195
MARS	4141	broad.mit.edu	37	12	57884335	57884335	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MARS	NM_004990	exon7	c.T678C	p.A226A	.	.	92	4	63	0	.	654
MCM9	254394	broad.mit.edu;bcgsc.ca	37	6	119137418	119137418	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MCM9	NM_017696	exon12	c.A2001G	p.V667V	.	.	150	5	200	0	.	515
MEF2A	4205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100211575	100211575	+	Missense_Mutation	SNP	C	C	A	rs1135561	alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MEF2A	NM_001130926	exon4	c.C306A	p.D102E	.	.	181	66	188	1	.	455
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42866314	42866314	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MEGF8	NM_001271938	exon33	c.C5793T	p.C1931C	.	.	40	15	19	0	.	23
MLL	4297	bcgsc.ca	37	11	118360569	118360569	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MLL	NM_001197104	exon12	c.C4542T	p.Y1514Y	.	.	58	4	75	0	.	1255
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149905792	149905792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MTMR1	NM_003828	exon11	c.G1321T	p.G441C	.	.	71	57	64	0	.	131
MTR	4548	broad.mit.edu	37	1	237054600	237054600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MTR	NM_000254	exon29	c.A3175G	p.I1059V	.	.	152	9	93	0	.	92
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057572	9057572	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MUC16	NM_024690	exon3	c.C29874A	p.T9958T	.	.	266	108	280	0	.	566
MUC2	4583	broad.mit.edu	37	11	1092693	1092693	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MUC2	NM_002457	exon30	c.G4512A	p.T1504T	.	.	376	10	277	8	.	90
MUC2	4583	mdanderson.org	37	11	1093094	1093094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MUC2	NM_002457	exon30	c.T4913G	p.V1638G	.	.	31	6	21	0	.	90
MUC4	4585	broad.mit.edu	37	3	195508235	195508235	+	Missense_Mutation	SNP	T	T	C	rs201826718	byfrequency	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MUC4	NM_018406	exon2	c.A10216G	p.T3406A	.	.	106	4	92	0	T|0.006;C|0.994	90
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10429161	10429161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MYH2	NM_017534	exon31	c.A4220T	p.E1407V	.	.	109	9	102	0	.	194
MYO9B	4650	broad.mit.edu	37	19	17298832	17298832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MYO9B	NM_001130065	exon19	c.A2666G	p.Y889C	.	.	62	3	49	0	.	67
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926593	1926593	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MYT1L	NM_015025	exon10	c.G948A	p.E316E	.	.	164	45	179	0	.	95
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47037989	47037989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NBEAL2	NM_015175	exon16	c.G2380T	p.G794C	.	.	49	21	64	0	.	69
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50186244	50186244	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NCKAP5L	NM_001037806	exon12	c.G3777T	p.L1259L	.	.	59	21	61	0	.	68
ND6	0	broad.mit.edu;bcgsc.ca	37	MT	14279	14279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	ENST00000361681	exon1	c.C395T	p.S132L	.	.	43	23	92	0	.	.
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	115792014	115792014	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NDST4	NM_022569	exon7	c.G1629A	p.W543X	.	.	234	22	201	0	.	94
NDUFS8	4728	broad.mit.edu;bcgsc.ca	37	11	67799630	67799630	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NDUFS8	NM_002496	exon2	c.G12A	p.L4L	.	.	64	5	68	0	.	91
NEB	4703	broad.mit.edu	37	2	152422323	152422323	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NEB	NM_001271208	exon115	c.A18168G	p.R6056R	.	.	64	3	77	0	.	145
NECAP1	25977	broad.mit.edu	37	12	8248266	8248266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NECAP1	NM_015509	exon7	c.A746G	p.N249S	.	.	37	3	41	0	.	91
NES	10763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156641759	156641759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NES	NM_006617	exon4	c.C2221A	p.H741N	.	.	267	144	133	0	.	520
NHSL1	57224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138752749	138752749	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NHSL1	NM_020464	exon5	c.T2745C	p.T915T	.	.	38	10	68	0	.	68
NKTR	4820	broad.mit.edu;bcgsc.ca	37	3	42687400	42687400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NKTR	NM_005385	exon17	c.C4322T	p.S1441F	.	.	337	11	272	0	.	93
NMUR1	10316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232392880	232392880	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NMUR1	NM_006056	exon2	c.G852A	p.R284R	.	.	73	29	60	0	.	523
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149002507	149002507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NR3C2	NM_000901	exon9	c.C2943G	p.F981L	.	.	95	15	78	0	.	154
NT5C3A	0	bcgsc.ca	37	7	33066483	33066483	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001002010	exon2	c.A198G	p.T66T	.	.	51	4	32	0	.	.
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95147921	95147921	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OGN	NM_033014	exon7	c.C878G	p.P293R	.	.	156	61	129	0	.	492
OR12D3	81797	broad.mit.edu	37	6	29343006	29343006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR12D3	NM_030959	exon1	c.A59G	p.E20G	.	.	205	5	139	0	.	133
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248308490	248308490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR2M5	NM_001004690	exon1	c.T41C	p.L14P	.	.	329	177	201	0	.	71
OR2Y1	134083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180166444	180166444	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR2Y1	NM_001001657	exon1	c.C615T	p.V205V	.	.	162	21	95	0	.	68
OR4A16	81327	broad.mit.edu	37	11	55111644	55111644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR4A16	NM_001005274	exon1	c.A968G	p.K323R	.	.	45	3	59	0	.	69
OR4X2	119764	broad.mit.edu	37	11	48267566	48267566	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR4X2	NM_001004727	exon1	c.A911T	p.X304L	.	.	74	4	75	0	.	68
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587787	55587787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR5D18	NM_001001952	exon1	c.A682G	p.K228E	.	.	168	62	142	0	.	71
OR5L2	26338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55595156	55595156	+	Silent	SNP	G	G	T	rs144734181	byfrequency;alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR5L2	NM_001004739	exon1	c.G462T	p.V154V	.	.	231	87	198	0	G|0.999;C|0.001	69
OR9I1	219954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57886305	57886305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR9I1	NM_001005211	exon1	c.T612A	p.N204K	.	.	93	20	88	0	.	69
ORC2	4999	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	201790570	201790570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ORC2	NM_006190	exon13	c.A1136G	p.K379R	.	.	112	9	90	0	.	209
PAQR5	54852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69695986	69695986	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PAQR5	NM_001104554	exon9	c.T818A	p.L273H	.	.	74	26	86	0	.	70
PCCA	5095	bcgsc.ca	37	13	100992412	100992412	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCCA	NM_001178004	exon18	c.A1542G	p.G514G	.	.	74	4	53	0	.	227
PCDH7	5099	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30921951	30921951	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDH7	NM_032457	exon2	c.G3351A	p.T1117T	.	.	95	41	72	2	.	229
PCDHA7	56141	broad.mit.edu	37	5	140214366	140214366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDHA7	NM_031852	exon1	c.T398C	p.F133S	.	.	407	6	231	0	.	94
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140347883	140347883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDHAC2	NM_031883	exon1	c.G1532A	p.R511K	.	.	204	18	113	0	.	26
PCDHGA1	56114	broad.mit.edu	37	5	140710529	140710529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDHGA1	NM_018912	exon1	c.A278G	p.E93G	.	.	148	4	81	0	.	137
PCDHGA3	56112	broad.mit.edu	37	5	140724878	140724878	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDHGA3	NM_032011	exon1	c.T1278G	p.D426E	.	.	113	17	58	8	.	68
PCDHGB4	8641	broad.mit.edu	37	5	140768183	140768183	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_032098	exon1	c.A732G	p.Q244Q	.	.	134	4	73	0	.	.
PCLO	27445	broad.mit.edu;bcgsc.ca	37	7	82583376	82583376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCLO	NM_014510	exon5	c.A6893G	p.K2298R	.	.	246	8	199	0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82508658	82508658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCLO	NM_014510	exon10	c.T13649C	p.M4550T	.	.	157	67	168	0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82582751	82582751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCLO	NM_014510	exon5	c.C7518A	p.S2506R	.	.	88	13	91	0	.	29
PDE8A	5151	broad.mit.edu;bcgsc.ca	37	15	85641229	85641229	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PDE8A	NM_002605	exon9	c.A903G	p.Q301Q	.	.	146	5	152	0	.	94
PEX2	5828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77895811	77895811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PEX2	NM_000318	exon4	c.G604A	p.E202K	.	.	67	16	43	0	.	91
PGD	5226	broad.mit.edu;bcgsc.ca	37	1	10463148	10463148	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PGD	NM_002631	exon4	c.T285C	p.G95G	.	.	176	7	145	0	.	91
PHGDH	26227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120266059	120266059	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PHGDH	NM_006623	exon3	c.G351C	p.L117L	.	.	122	50	113	0	.	91
PIGR	5284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207103702	207103702	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PIGR	NM_002644	exon11	c.C2256T	p.T752T	.	.	82	43	43	1	.	92
PIK3R5	23533	ucsc.edu;bcgsc.ca	37	17	8812422	8812422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PIK3R5	NM_001142633	exon3	c.T173C	p.L58P	.	.	44	4	50	0	.	1146
POGZ	23126	broad.mit.edu	37	1	151400778	151400778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	POGZ	NM_015100	exon6	c.T680C	p.F227S	.	.	258	4	138	0	.	93
POLQ	10721	broad.mit.edu	37	3	121208518	121208518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	POLQ	NM_199420	exon16	c.A3260G	p.K1087R	.	.	111	4	112	1	.	664
POLR2G	5436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62533971	62533971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	POLR2G	NM_002696	exon8	c.G511T	p.V171L	.	.	122	7	133	0	.	90
POU3F3	5455	broad.mit.edu	37	2	105473040	105473040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	POU3F3	NM_006236	exon1	c.A1072G	p.T358A	.	.	100	4	106	1	.	45
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36839559	36839559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PPIL1	NM_016059	exon2	c.A146G	p.N49S	.	.	292	153	175	0	.	91
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204378958	204378958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PPP1R15B	NM_032833	exon1	c.A1582C	p.S528R	.	.	124	69	90	0	.	652
PPP2R5C	5527	broad.mit.edu	37	14	102372841	102372841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PPP2R5C	NM_001161726	exon12	c.C1291T	p.R431C	.	.	148	3	142	0	.	659
PRDX3	10935	broad.mit.edu	37	10	120934019	120934019	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PRDX3	NM_006793	exon3	c.A255G	p.L85L	.	.	250	5	225	0	.	90
PREP	5550	broad.mit.edu	37	6	105821363	105821363	+	Missense_Mutation	SNP	T	T	C	rs188426588		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PREP	NM_002726	exon5	c.A476G	p.D159G	.	.	103	4	111	1	T|0.999;C|0.000	93
PREX2	80243	broad.mit.edu	37	8	69011988	69011988	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PREX2	NM_025170	exon23	c.A2625G	p.E875E	.	.	339	6	126	1	.	390
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79320970	79320970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PRUNE2	NM_015225	exon8	c.G6220A	p.A2074T	.	.	110	22	109	0	.	157
PSMB7	5695	broad.mit.edu;bcgsc.ca	37	9	127115964	127115964	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PSMB7	NM_002799	exon8	c.A747G	p.K249K	.	.	73	4	67	1	.	90
PSMD8	5714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38867031	38867031	+	Missense_Mutation	SNP	G	G	A	rs200403794		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PSMD8	NM_002812	exon3	c.G473A	p.R158H	.	.	83	30	56	0	.	68
PTP4A3	11156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	142441034	142441034	+	Missense_Mutation	SNP	C	C	A	rs145157893	alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PTP4A3	NM_032611	exon5	c.C412A	p.R138S	.	.	63	14	25	0	C|1.000;T|0.000	226
RAB20	55647	broad.mit.edu;mdanderson.org	37	13	111213727	111213727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RAB20	NM_017817	exon1	c.G140T	p.R47L	.	.	27	7	19	0	.	227
RACGAP1P	83956	broad.mit.edu;bcgsc.ca	37	12	45458142	45458142	+	RNA	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	93	17	82	0	.	.
RANBP2	5903	broad.mit.edu	37	2	109371681	109371681	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RANBP2	NM_006267	exon17	c.T2432G	p.L811R	.	.	1083	14	927	0	.	675
RAPGEF3	10411	ucsc.edu;bcgsc.ca	37	12	48141580	48141580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RAPGEF3	NM_001098531	exon14	c.A1388G	p.Q463R	.	.	37	4	25	0	.	660
RBM10	8241	bcgsc.ca	37	X	47045744	47045744	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RBM10	NM_001204468	exon23	c.C2820T	p.S940S	.	.	54	4	63	0	.	626
RBM25	58517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73576174	73576174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RBM25	NM_021239	exon14	c.C1666G	p.P556A	.	.	154	39	138	0	.	91
RECQL5	9400	broad.mit.edu;ucsc.edu	37	17	73624403	73624403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RECQL5	NM_004259	exon18	c.A2700C	p.Q900H	.	.	56	5	38	0	.	538
RECQL	5965	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21644631	21644631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RECQL	NM_032941	exon4	c.T36C	p.D12D	.	.	122	32	103	1	.	228
REXO4	57109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	136272149	136272151	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	REXO4	NM_020385	exon8	c.1195_1197del	p.399_399del	.	.	52	13	40	0	.	90
RIOK2	55781	bcgsc.ca	37	5	96498849	96498849	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RIOK2	NM_018343	exon10	c.A1575G	p.E525E	.	.	51	4	66	0	.	419
RNF26	79102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119206381	119206381	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RNF26	NM_032015	exon1	c.A549G	p.V183V	.	.	106	38	111	0	.	227
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78666831	78666831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ROBO1	NM_002941	exon27	c.G4236T	p.E1412D	.	.	88	28	73	0	.	67
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	68903877	68903877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RPE65	NM_000329	exon10	c.T1121C	p.I374T	.	.	112	11	89	0	.	91
RSRC1	51319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157920990	157920990	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RSRC1	NM_016625	exon4	c.G450A	p.E150E	.	.	169	72	167	0	.	90
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237586488	237586488	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RYR2	NM_001035	exon12	c.A945T	p.L315L	.	.	429	27	243	0	.	158
SBF1P1	100133234	ucsc.edu	37	8	56365411	56365411	+	RNA	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	20	8	11	0	.	.
SCN3A	6328	ucsc.edu;bcgsc.ca	37	2	165947496	165947496	+	Missense_Mutation	SNP	G	G	T	rs200457036		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SCN3A	NM_006922	exon28	c.C5167A	p.P1723T	.	.	267	90	240	2	G|0.999;T|0.000	141
SDHB	6390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17354296	17354296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SDHB	NM_003000	exon5	c.C488T	p.S163F	.	.	91	35	108	0	.	658
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81964803	81964803	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEL1L	NM_005065	exon9	c.G927A	p.Q309Q	.	.	67	17	74	0	.	227
SEMA3D	223117	broad.mit.edu	37	7	84644384	84644384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEMA3D	NM_152754	exon14	c.C1694T	p.T565I	.	.	109	3	116	0	.	138
SEMG1	6406	broad.mit.edu	37	20	43836464	43836464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEMG1	NM_003007	exon2	c.A526G	p.T176A	.	.	174	5	161	1	.	92
SEPSECS	51091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25156767	25156767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEPSECS	NM_016955	exon5	c.A554C	p.E185A	.	.	63	8	49	0	.	90
SEPT11	55752	broad.mit.edu;bcgsc.ca	37	4	77955658	77955658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEPT11	NM_018243	exon10	c.T1283C	p.F428S	.	.	171	6	128	0	.	68
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	1471995	1471995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SIRPB2	NM_001122962	exon1	c.C11T	p.T4M	.	.	90	8	81	0	.	226
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_207371	exon4	c.G1266A	p.E422E	.	.	38	6	35	0	.	.
SLC22A1	6580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160543147	160543147	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLC22A1	NM_153187	exon1	c.G180A	p.Q60Q	.	.	66	13	63	0	.	90
SLC22A23	63027	broad.mit.edu	37	6	3284124	3284124	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLC22A23	NM_015482	exon9	c.C1665T	p.S555S	.	.	61	3	41	0	.	23
SLC2A1	6513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43394606	43394606	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLC2A1	NM_006516	exon8	c.G1071T	p.L357L	.	.	55	19	42	0	.	94
SLFN14	342618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33875781	33875781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLFN14	NM_001129820	exon4	c.C2216T	p.A739V	.	.	125	50	110	0	.	1
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20535249	20535249	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLIT2	NM_004787	exon18	c.A1743G	p.A581A	.	.	505	188	449	0	.	521
SMC1B	27127	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	45809347	45809347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SMC1B	NM_148674	exon1	c.C102A	p.N34K	.	.	50	15	65	0	.	229
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88396264	88396264	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SMYD1	NM_198274	exon6	c.G849C	p.L283L	.	.	88	32	84	0	.	229
SOGA2	23255	broad.mit.edu	37	18	8718545	8718545	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_015210	exon3	c.C97T	p.L33L	.	.	76	3	77	0	.	.
SOS1	6654	broad.mit.edu	37	2	39234282	39234282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SOS1	NM_005633	exon16	c.A2563G	p.I855V	.	.	134	4	116	0	.	851
SOWAHB	345079	hgsc.bcm.edu	37	4	77817627	77817684	+	Frame_Shift_Del	DEL	CTGAGACCCTGAGGGCTCCGGCTGGGGCTGCCCTCCTTCCGAGATACAGAAAGGCCCC	CTGAGACCCTGAGGGCTCCGGCTGGGGCTGCCCTCCTTCCGAGATACAGAAAGGCCCC	-	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	CTGAGACCCTGAGGGCTCCGGCTGGGGCTGCCCTCCTTCCGAGATACAGAAAGGCCCC	CTGAGACCCTGAGGGCTCCGGCTGGGGCTGCCCTCCTTCCGAGATACAGAAAGGCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001029870	exon1	c.1319_1376del	p.440_459del	.	.	41	0	49	0	.	.
SPEN	23013	bcgsc.ca	37	1	16248804	16248804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SPEN	NM_015001	exon10	c.C1810A	p.Q604K	.	.	60	6	45	0	.	298
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16255449	16255449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SPEN	NM_015001	exon11	c.A2714G	p.N905S	.	.	101	25	93	0	.	298
SPTB	6710	broad.mit.edu	37	14	65260412	65260412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SPTB	NM_001024858	exon13	c.G1969A	p.E657K	.	.	101	4	99	0	.	100
TARSL2	123283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102215816	102215816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TARSL2	NM_152334	exon13	c.A1775G	p.N592S	.	.	87	23	64	0	.	92
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186281901	186281901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TBCCD1	NM_001134415	exon2	c.G218T	p.W73L	.	.	61	24	51	0	.	108
TDRD7	23424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100235830	100235830	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TDRD7	NM_014290	exon11	c.C2001T	p.L667L	.	.	102	36	90	0	.	93
TECTA	7007	broad.mit.edu	37	11	121037382	121037382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TECTA	NM_005422	exon17	c.A5479G	p.R1827G	.	.	68	4	50	0	.	225
TFAP4	7023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4308230	4308230	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TFAP4	NM_003223	exon7	c.C843T	p.G281G	.	.	45	18	54	0	.	91
TIAM1	7074	broad.mit.edu	37	21	32519269	32519269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TIAM1	NM_003253	exon21	c.A3419G	p.K1140R	.	.	135	5	114	2	.	724
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43471363	43471363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TJAP1	NM_001146016	exon10	c.G498C	p.E166D	.	.	85	42	78	0	.	90
TMEM128	85013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4248025	4248025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TMEM128	NM_032927	exon2	c.T71G	p.L24R	.	.	164	40	137	0	.	90
TMEM241	85019	ucsc.edu;bcgsc.ca	37	18	20953716	20953716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_032933	exon7	c.T395C	p.L132P	.	.	39	4	30	0	.	.
TMEM8C	389827	broad.mit.edu	37	9	136379855	136379855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TMEM8C	NM_001080483	exon5	c.C569T	p.S190F	.	.	55	4	62	0	.	68
TMOD2	29767	bcgsc.ca	37	15	52058659	52058659	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TMOD2	NM_014548	exon2	c.A21G	p.K7K	.	.	56	4	70	0	.	92
TOP2B	7155	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25668097	25668097	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TOP2B	NM_001068	exon18	c.C2163T	p.L721L	.	.	142	29	141	1	.	273
TRHDE	29953	bcgsc.ca	37	12	72667003	72667003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TRHDE	NM_013381	exon1	c.C445T	p.H149Y	.	.	34	4	43	0	.	93
TRIM37	4591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	57138433	57138433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TRIM37	NM_015294	exon12	c.G979T	p.V327L	.	.	183	17	141	0	.	660
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4621894	4621894	+	Missense_Mutation	SNP	C	C	T	rs139399398		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TRIM68	NM_018073	exon7	c.G1070A	p.R357Q	.	.	118	53	118	0	C|1.000;T|0.000	91
TRIM8	81603	broad.mit.edu	37	10	104416988	104416988	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TRIM8	NM_030912	exon6	c.C1533T	p.S511S	.	.	39	4	38	0	.	227
tRNA-Leu1	0	broad.mit.edu	37	MT	3255	3255	+	RNA	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	26	12	70	0	.	.
TSEN2	80746	bcgsc.ca	37	3	12573126	12573126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TSEN2	NM_001145392	exon11	c.T1306C	p.S436P	.	.	116	5	79	0	.	90
TTC19	54902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15928399	15928399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTC19	NM_017775	exon8	c.T745C	p.F249L	.	.	130	21	86	0	.	91
TTC3	7267	broad.mit.edu	37	21	38555104	38555104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTC3	NM_001001894	exon36	c.T4646C	p.L1549P	.	.	322	5	323	1	.	590
TTC3P1	286495	bcgsc.ca	37	X	74961335	74961335	+	RNA	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTC3P1	.	.	.	.	.	.	39	9	37	0	.	63
TTLL10	254173	ucsc.edu;bcgsc.ca	37	1	1118288	1118288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTLL10	NM_001130045	exon11	c.T949C	p.S317P	.	.	37	4	42	0	.	153
TTLL7	79739	broad.mit.edu	37	1	84403640	84403640	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTLL7	NM_024686	exon8	c.A783G	p.E261E	.	.	257	4	251	0	.	91
TTN	7273	bcgsc.ca	37	2	179396317	179396317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTN	NM_001267550	exon358	c.A105025G	p.S35009G	.	.	118	5	102	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179415808	179415808	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTN	NM_001267550	exon336	c.A91450T	p.T30484S	.	.	92	43	82	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179544137	179544137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTN	NM_001267550	exon142	c.A33671T	p.E11224V	.	.	216	27	167	0	.	636
UGDH	7358	bcgsc.ca	37	4	39507356	39507356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	UGDH	NM_003359	exon8	c.A919G	p.N307D	.	.	54	4	51	0	.	156
USB1	79650	bcgsc.ca	37	16	58051315	58051315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_024598	exon5	c.A581G	p.E194G	.	.	113	5	126	0	.	.
USH2A	7399	broad.mit.edu	37	1	215901616	215901616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	USH2A	NM_206933	exon61	c.G11822A	p.R3941Q	.	.	174	4	86	0	.	115
VCP	7415	bcgsc.ca	37	9	35064153	35064153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	VCP	NM_007126	exon6	c.A706G	p.K236E	.	.	72	4	52	0	.	228
VPS8	23355	bcgsc.ca	37	3	184647403	184647403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	VPS8	NM_001009921	exon32	c.A2750G	p.H917R	.	.	81	4	70	0	.	91
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	183959774	183959774	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_138345	exon19	c.G3677A	p.W1226X	.	.	23	15	27	0	.	.
WASH2P	375260	broad.mit.edu	37	2	114356439	114356439	+	RNA	SNP	T	T	C	rs74547849		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	48	9	48	2	T|0.500;C|0.500	.
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54358487	54358487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	WDR7	NM_052834	exon8	c.C758G	p.P253R	.	.	169	18	168	0	.	93
WDR78	79819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67356850	67356850	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	WDR78	NM_207014	exon4	c.G630A	p.L210L	.	.	119	43	106	0	.	92
WEE2	494551	bcgsc.ca	37	7	141408641	141408641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	WEE2	NM_001105558	exon1	c.A83G	p.K28R	.	.	74	4	62	0	.	305
YIPF1	54432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	54332448	54332448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	YIPF1	NM_018982	exon8	c.A631G	p.I211V	.	.	99	14	68	0	.	154
YIPF7	285525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	44637980	44637980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_182592	exon3	c.C311T	p.P104L	.	.	140	8	98	0	.	.
ZMYM5	9205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20426199	20426199	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZMYM5	NM_001039650	exon3	c.C122G	p.P41R	.	.	100	34	75	0	.	90
ZNF185	7739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152085856	152085856	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF185	NM_001178109	exon5	c.C291T	p.S97S	.	.	100	27	92	0	.	133
ZNF211	10520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58152126	58152126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF211	NM_001265597	exon5	c.G467T	p.G156V	.	.	170	18	153	0	.	92
ZNF229	7772	broad.mit.edu	37	19	44933747	44933747	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF229	NM_014518	exon6	c.A1209G	p.K403K	.	.	115	5	116	1	.	94
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	87967391	87967391	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF292	NM_015021	exon8	c.G4044A	p.G1348G	.	.	86	52	143	0	.	72
ZNF384	171017	broad.mit.edu;bcgsc.ca	37	12	6778320	6778320	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF384	NM_001135734	exon10	c.C1209T	p.F403F	.	.	227	6	177	0	.	1083
ZNF540	163255	bcgsc.ca	37	19	38103492	38103492	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF540	NM_152606	exon5	c.A1311G	p.K437K	.	.	81	5	76	1	.	153
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12637749	12637749	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF564	NM_144976	exon4	c.A1173G	p.G391G	.	.	99	8	82	0	.	91
ZNF594	84622	bcgsc.ca	37	17	5085715	5085715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF594	NM_032530	exon2	c.A1837G	p.R613G	.	.	138	5	111	0	.	71
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58489764	58489767	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF606	NM_025027	exon7	c.2281_2284del	p.761_762del	.	.	172	45	177	0	.	92
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71591324	71591324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF638	NM_014497	exon5	c.A1659G	p.P553P	.	.	142	58	113	0	.	94
ZNF804A	91752	broad.mit.edu	37	2	185798394	185798394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF804A	NM_194250	exon3	c.A320G	p.E107G	.	.	228	4	209	0	.	163
ZXDB	158586	broad.mit.edu	37	X	57619880	57619880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZXDB	NM_007157	exon1	c.A1399G	p.S467G	.	.	258	4	181	0	.	130
LCP1	3936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	46730648	46730649	+	Missense_Mutation	DNP	TC	TC	CA	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	p.D139C	.	.	.	.	.	.	.	
TPTE2P4	286573	bcgsc.ca	37	Y	28725745	28725746	+	RNA	DNP	CC	CC	AT	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	.	.	.	.	.	.	.	
