Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2327903	2327903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	ABCA3	NM_001089	exon31	c.C4886T	p.A1629V	.	.	32	13	34	0	.	1015
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52440918	52440918	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	BAP1,uveal_tract,malignant_melanoma,+2	BAP1	NM_004656	exon8	c.T586G	p.W196G	.	.	98	54	135	0	.	1032
C16orf96	342346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4606689	4606689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_001145011	exon1	c.G199A	p.A67T	.	.	132	15	156	0	.	.
CCDC154	645811	hgsc.bcm.edu	37	16	1486065	1486065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_001143980	exon14	c.C1510T	p.R504W	.	.	77	5	78	0	.	.
CDC27	996	bcgsc.ca	37	17	45234350	45234350	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	CDC27	NM_001114091	exon7	c.G771A	p.Q257Q	.	.	52	5	50	0	.	291
CDC27	996	hgsc.bcm.edu;bcgsc.ca	37	17	45234367	45234367	+	Missense_Mutation	SNP	A	A	T	rs200148949		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	CDC27	NM_001114091	exon7	c.T754A	p.S252T	.	.	63	5	60	0	.	291
CDRT15P1	94158	broad.mit.edu	37	17	13927886	13927886	+	RNA	SNP	G	G	A	rs11649821	byfrequency	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	.	.	.	.	.	.	227	3	292	1	G|0.863;A|0.137	.
CEP164	22897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117263284	117263284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	CEP164	NM_001271933	exon18	c.G2443T	p.G815W	.	.	143	45	100	0	.	69
CERKL	375298	bcgsc.ca	37	2	182468803	182468803	+	Missense_Mutation	SNP	T	T	G	rs61750041	byfrequency	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	CERKL	NM_001160277	exon2	c.A242C	p.D81A	.	.	45	4	34	0	T|0.866;G|0.134	228
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	7722	7722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	ENST00000361739	exon1	c.T137C	p.L46P	.	.	10	10	30	0	.	.
DCAF8L2	347442	hgsc.bcm.edu	37	X	27765399	27765399	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	DCAF8L2	NM_001136533	exon1	c.A387G	p.E129E	.	.	74	10	41	0	.	42
DMGDH	29958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78322295	78322295	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	DMGDH	NM_013391	exon13	c.C2142T	p.A714A	.	.	278	100	241	0	.	94
DNAJB1	3337	broad.mit.edu	37	19	14627500	14627500	+	Silent	SNP	T	T	C	rs143985567	byfrequency	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	DNAJB1	NM_006145	exon2	c.A570G	p.L190L	.	.	165	4	114	1	T|1.000;C|0.000	650
EML4	27436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	42488346	42488346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	EML4	NM_019063	exon4	c.C424T	p.R142X	.	.	54	9	37	0	.	3734
FOXP2	93986	broad.mit.edu	37	7	114271582	114271582	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	FOXP2	NM_014491	exon6	c.598-1G>C	.	.	.	138	3	90	0	.	295
GEMIN8	54960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14027050	14027050	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	GEMIN8	NM_017856	exon5	c.C711T	p.V237V	.	.	233	83	257	0	.	130
GGCT	79017	broad.mit.edu	37	7	30538452	30538452	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	GGCT	NM_024051	exon3	c.C390T	p.Y130Y	.	.	177	5	129	0	.	90
HCCS	3052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11139831	11139831	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HCCS	NM_001122608	exon7	c.G708A	p.K236K	.	.	205	70	226	0	.	226
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	30457628	30457628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HLA-E	NM_005516	exon2	c.C190A	p.P64T	.	.	47	14	96	0	.	516
HRC	3270	hgsc.bcm.edu	37	19	49657889	49657889	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HRC	NM_002152	exon1	c.A606G	p.E202E	.	.	250	10	188	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HRC	NM_002152	exon1	c.A579G	p.E193E	.	.	276	12	190	0	.	91
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	C	rs121913499	bycluster	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	IDH1,brain,glioma,+1	IDH1	NM_005896	exon4	c.C394G	p.R132G	.	.	186	86	185	0	.	23522
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	103013028	103013028	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IL18R1	NM_003855	exon10	c.C1308T	p.S436S	.	.	97	5	64	0	.	93
IRAK4	51135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44176211	44176211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IRAK4	NM_016123	exon9	c.T1043C	p.I348T	.	.	89	37	76	0	.	1366
IVL	3713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152883644	152883644	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IVL	NM_005547	exon2	c.G1371C	p.V457V	.	.	167	61	160	0	.	93
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	KRT4	NM_002272	exon1	c.T240C	p.F80F	.	.	100	17	78	0	A|1.000;|0.000	96
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	KRT4	NM_002272	exon1	c.C237T	p.G79G	.	.	102	16	77	0	.	96
LBR	3930	broad.mit.edu	37	1	225600338	225600338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LBR	NM_194442	exon8	c.C902T	p.A301V	.	.	242	26	141	10	.	228
LEMD3	23592	broad.mit.edu	37	12	65564417	65564417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LEMD3	NM_001167614	exon1	c.T1041A	p.D347E	.	.	78	3	87	0	.	516
LHB	3972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49519408	49519408	+	Missense_Mutation	SNP	G	G	C	rs201749590	alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LHB	NM_000894	exon3	c.C343G	p.R115G	.	.	54	21	70	0	G|0.999;A|0.000	90
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170029679	170029679	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LRP2	NM_004525	exon57	c.C11070T	p.Y3690Y	.	.	185	70	167	0	.	175
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91794266	91794266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_001161528	exon1	c.A251G	p.N84S	.	.	136	15	82	0	.	.
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	19285247	19285247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MAPK7	NM_002749	exon5	c.G1631A	p.G544E	.	.	16	12	27	0	.	1402
MED15	51586	hgsc.bcm.edu;bcgsc.ca	37	22	20939289	20939289	+	Missense_Mutation	SNP	G	G	T	rs147995933	alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MED15	NM_001003891	exon15	c.G1951T	p.G651C	.	.	75	4	78	0	G|1.000;A|0.000	211
MEX3A	92312	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156051766	156051766	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MEX3A	NM_001093725	exon1	c.A24G	p.G8G	.	.	187	56	164	1	.	158
MUC13	56667	bcgsc.ca	37	3	124646700	124646700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MUC13	NM_033049	exon2	c.A190G	p.T64A	.	.	95	4	103	1	.	90
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9033614	9033614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MUC16	NM_024690	exon9	c.G36323A	p.G12108D	.	.	216	28	167	1	.	566
MUC4	4585	bcgsc.ca	37	3	195507830	195507830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MUC4	NM_018406	exon2	c.A10621G	p.S3541G	.	.	736	69	1008	27	.	90
MUC4	4585	broad.mit.edu;mdanderson.org	37	3	195512355	195512355	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MUC4	NM_018406	exon2	c.G6096A	p.P2032P	.	.	674	59	634	1	.	90
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128366325	128366325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MYO7B	NM_001080527	exon22	c.G2686A	p.A896T	.	.	146	48	149	0	.	47
PDE7B	27115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136268612	136268612	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	PDE7B	NM_018945	exon2	c.32delA	p.E11fs	.	.	82	56	128	0	.	91
PODNL1	79883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14046601	14046601	+	Missense_Mutation	SNP	C	C	T	rs147712582	byfrequency	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	PODNL1	NM_024825	exon5	c.G448A	p.A150T	.	.	57	24	84	1	C|1.000;T|0.000	90
PRDM9	56979	broad.mit.edu	37	5	23526978	23526978	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	PRDM9	NM_020227	exon11	c.T1781A	p.V594D	.	.	109	6	138	3	.	139
RAI1	10743	bcgsc.ca	37	17	17707105	17707105	+	Silent	SNP	T	T	C	rs3818717	byfrequency	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RAI1	NM_030665	exon4	c.T5601C	p.I1867I	.	.	93	6	111	0	T|0.635;C|0.365	91
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45486412	45486412	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RASSF4	NM_032023	exon9	c.A702G	p.K234K	.	.	41	15	35	0	.	290
RPP40	10799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4996590	4996590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RPP40	NM_006638	exon6	c.A624C	p.K208N	.	.	125	49	94	0	.	90
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3179635	3179635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	S1PR4	NM_003775	exon1	c.C845A	p.A282D	.	.	56	31	93	0	.	591
SAMD8	142891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76910777	76910777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SAMD8	NM_144660	exon2	c.G491T	p.G164V	.	.	111	43	147	1	.	90
SDCBP2	27111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1299029	1299029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SDCBP2	NM_080489	exon4	c.A158T	p.Y53F	.	.	58	20	66	0	.	154
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71437017	71437017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SDK2	NM_001144952	exon6	c.C659T	p.P220L	.	.	217	63	175	0	.	24
SGSM1	129049	broad.mit.edu;bcgsc.ca	37	22	25246291	25246291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SGSM1	NM_001098497	exon5	c.C347A	p.P116Q	.	.	117	36	90	2	.	27
SKIDA1	387640	hgsc.bcm.edu	37	10	21806738	21806738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_207371	exon4	c.A14T	p.K5M	.	.	99	4	79	0	.	.
SLC6A2	6530	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55725913	55725913	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SLC6A2	NM_001172501	exon6	c.T867C	p.N289N	.	.	123	52	152	1	.	526
SUCO	51430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172571313	172571313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_014283	exon21	c.A3128T	p.Y1043F	.	.	81	28	70	0	.	.
TAS2R39	259285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142881004	142881004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TAS2R39	NM_176881	exon1	c.T493C	p.S165P	.	.	191	63	156	1	.	1
TECRL	253017	hgsc.bcm.edu	37	4	65240925	65240925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TECRL	NM_001010874	exon2	c.C251A	p.T84N	.	.	92	4	71	0	.	90
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155170766	155170766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	THBS3	NM_007112	exon13	c.1470delG	p.G490fs	.	.	310	107	242	0	.	222
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	155175006	155175006	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	THBS3	NM_007112	exon3	c.C388T	p.R130X	.	.	146	59	176	0	.	222
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	170736726	170736726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TLX3	NM_021025	exon1	c.C357A	p.S119R	.	.	32	10	61	0	.	658
TMEM5	10329	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64196151	64196151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TMEM5	NM_014254	exon4	c.G709A	p.V237M	.	.	91	24	76	1	.	90
TNRC18	84629	hgsc.bcm.edu;bcgsc.ca	37	7	5353127	5353127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TNRC18	NM_001080495	exon27	c.C7395A	p.D2465E	.	.	69	4	92	0	.	46
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135692416	135692416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_001167576	exon2	c.C660T	p.N220N	.	.	238	103	235	1	.	.
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45810827	45810827	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TRPM2	NM_003307	exon10	c.C1359G	p.D453E	.	.	132	53	106	0	.	92
UPP2	151531	broad.mit.edu	37	2	158991379	158991379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	UPP2	NM_001135098	exon9	c.C1102T	p.R368W	.	.	216	6	189	1	.	90
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144134995	144134995	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	USP38	NM_032557	exon9	c.T1866C	p.P622P	.	.	144	57	103	0	.	660
ZNF804B	219578	bcgsc.ca;mdanderson.org	37	7	88965873	88965873	+	Missense_Mutation	SNP	T	T	A	rs147794726	byfrequency;alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	ZNF804B	NM_181646	exon4	c.T3577A	p.S1193T	.	.	359	21	250	2	T|0.989;C|0.011	101
