Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150532541	150532541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ADAMTSL4	NM_019032	exon19	c.C3094A	p.Q1032K	.	.	188	46	184	0	.	92
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	88012960	88012963	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	AFF1	NM_001166693	exon7	c.1207_1210del	p.403_404del	.	.	114	18	124	0	.	289
AMPD2	271	broad.mit.edu;bcgsc.ca	37	1	110168805	110168805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	AMPD2_ENST00000393689,NS,carcinoma,0	AMPD2	NM_004037	exon4	c.G539A	p.R180Q	.	.	229	8	294	0	.	292
ANKRD32	84250	hgsc.bcm.edu	37	5	94001726	94001726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ANKRD32	NM_032290	exon12	c.T1529G	p.I510S	.	.	60	5	43	0	.	92
ANKRD36	375248	broad.mit.edu	37	2	97873573	97873573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_001164315	exon53	c.G3189C	p.L1063F	.	.	78	8	88	0	.	.
BAG6	7917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	31610883	31610883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	BAG6	NM_004639	exon14	c.C1676T	p.T559I	.	.	12	5	14	0	.	154
BRE-AS1	100302650	ucsc.edu	37	2	28113223	28113223	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	.	.	.	.	.	.	50	13	61	0	.	.
CASP8	841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	202131436	202131437	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	CASP8	NM_001080125	exon2	c.404_405insAG	p.I135fs	.	.	154	29	150	0	.	660
CPS1	1373	hgsc.bcm.edu;broad.mit.edu	37	2	211507320	211507322	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	CPS1	NM_001122633	exon26	c.3090_3092del	p.1030_1031del	.	.	303	24	384	0	.	162
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15297	15297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	ENST00000361789	exon1	c.T551C	p.I184T	.	.	102	11	49	0	.	.
DRD5	1816	ucsc.edu	37	4	9784617	9784617	+	Missense_Mutation	SNP	T	T	C	rs112029473	byfrequency	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	DRD5	NM_000798	exon1	c.T964C	p.C322R	.	.	68	9	86	0	T|0.500;C|0.500	91
ESPNP	284729	broad.mit.edu	37	1	17033539	17033539	+	RNA	SNP	T	T	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	.	.	.	.	.	.	24	5	44	1	.	.
FAM98A	25940	broad.mit.edu	37	2	33817255	33817255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	FAM98A,NS,carcinoma,+1	FAM98A	NM_015475	exon3	c.C229A	p.L77I	.	.	102	7	85	3	.	91
FEZF2	55079	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62356899	62356899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	FEZF2	NM_018008	exon4	c.C1113A	p.H371Q	.	.	130	16	177	2	.	278
FOCAD	54914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20740268	20740268	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_017794	exon7	c.C321T	p.H107H	.	.	226	53	232	0	.	.
FOXA2	3170	bcgsc.ca	37	20	22563746	22563746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	FOXA2	NM_021784	exon2	c.G134A	p.G45D	.	.	71	4	56	0	.	228
FPGS	2356	broad.mit.edu;ucsc.edu	37	9	130569921	130569921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	FPGS	NM_004957	exon8	c.G698T	p.G233V	.	.	70	5	100	1	.	90
HIST1H2AG	8969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27100892	27100892	+	Silent	SNP	G	G	A	rs201354380		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	HIST1H2AG	NM_021064	exon1	c.G42A	p.K14K	.	.	74	7	99	0	G|0.999;A|0.001	68
HRC	3270	hgsc.bcm.edu	37	19	49657886	49657886	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	HRC	NM_002152	exon1	c.G609A	p.E203E	.	.	353	19	295	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	HRC	NM_002152	exon1	c.A579G	p.E193E	.	.	287	43	284	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657923	49657923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	HRC	NM_002152	exon1	c.A572G	p.E191G	.	.	273	17	289	0	.	91
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52193327	52193327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ITGA1	NM_181501	exon10	c.T1132C	p.S378P	.	.	90	15	94	0	.	228
KCNMA1	3778	bcgsc.ca	37	10	78944590	78944590	+	Silent	SNP	G	G	A	rs1131824	byfrequency	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	KCNMA1	NM_002247	exon4	c.C687T	p.F229F	.	.	62	4	77	1	G|0.580;A|0.420	93
KIF1C	10749	ucsc.edu	37	17	4926892	4926892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	KIF1C	NM_006612	exon23	c.A2758C	p.S920R	.	.	40	2	74	0	.	92
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25380255	25380255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	KRAS,NS,carcinoma,+1	KRAS	NM_004985	exon3	c.G203T	p.R68M	.	.	149	32	144	0	.	92875
LFNG	3955	hgsc.bcm.edu	37	7	2566469	2566469	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	LFNG	NM_001166355	exon8	c.775-1G>T	.	.	.	65	4	86	0	.	636
MAP3K10	4294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40698304	40698304	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MAP3K10	NM_002446	exon1	c.G366A	p.V122V	.	.	31	14	38	0	.	981
MGAT4B	11282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179226059	179226059	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MGAT4B	NM_054013	exon10	c.C1257T	p.S419S	.	.	367	42	348	0	.	90
MUC2	4583	broad.mit.edu	37	11	1092954	1092954	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MUC2	NM_002457	exon30	c.G4773A	p.T1591T	.	.	156	5	167	1	.	90
MUC4	4585	bcgsc.ca	37	3	195506559	195506559	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MUC4	NM_018406	exon2	c.T11892C	p.G3964G	.	.	128	11	133	5	.	90
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1263483	1263484	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_002458	exon31	c.5373_5374del	p.1791_1792del	.	.	235	42	292	0	.	.
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108203986	108203986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MYH15	NM_014981	exon12	c.T1126C	p.F376L	.	.	150	38	173	0	.	73
MYT1L	23040	broad.mit.edu;bcgsc.ca	37	2	1915796	1915796	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MYT1L	NM_015025	exon12	c.C1699G	p.R567G	.	.	101	7	135	1	.	95
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12613	12613	+	Missense_Mutation	SNP	G	G	A	rs28359172	bycluster;byfrequency	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	ENST00000361567	exon1	c.G277A	p.A93T	.	.	103	5	49	0	G|0.039;A|0.961	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13577	13577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	ENST00000361567	exon1	c.T1241C	p.I414T	.	.	84	6	58	0	.	.
ND6	0	broad.mit.edu;bcgsc.ca	37	MT	14226	14226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	ENST00000361681	exon1	c.C448T	p.R150C	.	.	67	9	34	0	.	.
NEUROD1	4760	hgsc.bcm.edu;bcgsc.ca	37	2	182542873	182542885	+	Frame_Shift_Del	DEL	CATGGGAGCTGTC	CATGGGAGCTGTC	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	CATGGGAGCTGTC	CATGGGAGCTGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	NEUROD1	NM_002500	exon2	c.703_715del	p.235_239del	.	.	100	10	142	0	.	91
NLRX1	79671	broad.mit.edu	37	11	119045688	119045688	+	Missense_Mutation	SNP	C	C	T	rs140142940	byfrequency	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	NLRX1	NM_024618	exon6	c.C1376T	p.T459M	.	.	80	3	122	1	C|1.000;T|0.000	92
NUP214	8021	broad.mit.edu	37	9	134014668	134014668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	NUP214	NM_005085	exon10	c.A1006T	p.I336F	.	.	13	5	16	2	.	1131
PAX5	5079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	37002701	37002701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PAX5	NM_016734	exon5	c.G548A	p.G183D	.	.	132	6	182	0	.	1851
PIGQ	9091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	633549	633549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PIGQ	NM_148920	exon10	c.2198delC	p.T733fs	.	.	112	19	93	0	.	226
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161903	161903	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PLEKHG4B	NM_052909	exon10	c.C1425T	p.S475S	.	.	111	16	129	0	.	228
POM121L4P	266697	bcgsc.ca	37	22	21044637	21044637	+	RNA	SNP	T	T	A	rs71312777	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	.	.	.	.	.	.	24	5	40	0	T|0.978;A|0.022	.
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7888162	7888162	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PTPRM	NM_001105244	exon3	c.C255T	p.L85L	.	.	147	37	186	0	.	228
RALY	22913	ucsc.edu	37	20	32664866	32664866	+	Missense_Mutation	SNP	G	G	A	rs11538302		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	RALY	NM_016732	exon8	c.G691A	p.G231S	.	.	17	8	15	0	.	91
RNU6-71	100873774	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56510699	56510699	+	RNA	SNP	T	T	C	rs80241715	byfrequency;by1000genomes	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	.	.	.	.	.	.	264	48	294	0	T|0.993;C|0.007	.
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92734353	92734353	+	Missense_Mutation	SNP	G	G	A	rs138478808	byfrequency	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SAMD9	NM_001193307	exon2	c.C1058T	p.T353M	.	.	69	13	98	0	G|0.999;A|0.001	140
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165946841	165946841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SCN3A	NM_006922	exon28	c.A5822G	p.K1941R	.	.	335	84	271	0	.	141
SENP7	57337	bcgsc.ca	37	3	101177848	101177848	+	Missense_Mutation	SNP	T	T	G	rs6809436	byfrequency	TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SENP7	NM_020654	exon4	c.A235C	p.K79Q	.	.	129	6	140	0	T|0.902;G|0.098	661
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	234041461	234041461	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SLC35F3	NM_173508	exon2	c.C240T	p.I80I	.	.	292	75	230	0	.	92
SNAI3	333929	hgsc.bcm.edu	37	16	88747899	88747899	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SNAI3	NM_178310	exon2	c.C300A	p.A100A	.	.	88	4	94	0	.	91
SPATA31D1	389763	broad.mit.edu;bcgsc.ca	37	9	84606270	84606270	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_001001670	exon4	c.T885C	p.H295H	.	.	452	11	412	0	.	.
SYNJ1	8867	hgsc.bcm.edu	37	21	34017978	34017978	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SYNJ1	NM_203446	exon25	c.A3486G	p.P1162P	.	.	10	7	4	0	.	232
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62547559	62547559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SYT16	NM_031914	exon4	c.A1001G	p.D334G	.	.	159	39	214	0	.	23
TMPRSS2	7113	hgsc.bcm.edu	37	21	42851169	42851169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	TMPRSS2	NM_001135099	exon7	c.G724A	p.G242R	.	.	90	4	82	0	.	5208
UGT1A3	54659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234638003	234638003	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	UGT1A3	NM_019093	exon1	c.G231T	p.L77L	.	.	225	46	214	1	.	24
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94038399	94038399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_020818	exon15	c.A1384T	p.N462Y	.	.	42	15	62	0	.	.
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9643591	9643591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF426	NM_024106	exon6	c.C255G	p.I85M	.	.	97	20	96	0	.	91
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	37643714	37643714	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF585A	NM_199126	exon6	c.T922G	p.F308V	.	.	207	45	180	0	.	92
ZNF814	730051	bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	271	76	169	3	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	326	110	201	2	.	.
ZNF83	55769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53117500	53117500	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF83	NM_018300	exon3	c.A318G	p.L106L	.	.	232	31	219	0	.	91
ZNF841	284371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	52569235	52569235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_001136499	exon7	c.T1900A	p.F634I	.	.	220	20	199	0	.	.
