Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACAT1	38	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108010844	108010844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ACAT1	NM_000019	exon7	c.A632G	p.Q211R	.	.	104	22	127	0	.	93
ARHGAP25	9938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	69049534	69049534	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ARHGAP25	NM_001007231	exon10	c.C1263T	p.D421D	.	.	108	9	104	0	.	274
ARHGAP6	395	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11162339	11162339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ARHGAP6	NM_006125	exon11	c.C1937T	p.S646F	.	.	71	15	99	1	.	227
C12orf42	374470	broad.mit.edu;bcgsc.ca	37	12	103695959	103695960	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	C12orf42	NM_001099336	exon6	c.1010_1011insC	p.R337fs	.	.	77	14	90	0	.	91
CARS	833	bcgsc.ca	37	11	3028140	3028140	+	Silent	SNP	G	G	A	rs729662	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CARS	NM_001014437	exon19	c.C2118T	p.P706P	.	.	105	4	67	0	G|0.727;A|0.273	664
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37619175	37619175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CDK12	NM_016507	exon1	c.C851T	p.A284V	.	.	114	15	105	0	.	1055
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109794691	109794691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CELSR2	NM_001408	exon1	c.G1990A	p.G664S	.	.	322	63	374	0	.	526
CHCHD1	118487	hgsc.bcm.edu	37	10	75542873	75542873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CHCHD1	NM_203298	exon3	c.G285T	p.E95D	.	.	45	4	63	0	.	90
CHST13	166012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	126255177	126255182	+	In_Frame_Del	DEL	AGCTCT	AGCTCT	-	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	AGCTCT	AGCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CHST13	NM_152889	exon2	c.161_166del	p.54_56del	.	.	159	17	159	0	.	90
CLIP2	7461	ucsc.edu	37	7	73753250	73753250	+	Silent	SNP	T	T	C	rs539518	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CLIP2	NM_032421	exon3	c.T594C	p.T198T	.	.	29	14	13	1	T|0.406;C|0.594	93
CNGB1	1258	broad.mit.edu	37	16	57945763	57945763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CNGB1	NM_001297	exon25	c.G2386T	p.A796S	.	.	74	6	91	1	.	137
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53553482	53553482	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CSAD	NM_015989	exon16	c.T1314C	p.N438N	.	.	130	41	96	0	.	91
CUL7	9820	bcgsc.ca	37	6	43008298	43008298	+	Silent	SNP	C	C	T	rs2273917	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CUL7	NM_001168370	exon21	c.G4245A	p.L1415L	.	.	108	5	106	0	C|0.709;T|0.291	229
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36428640	36428640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DCLK1	NM_004734	exon6	c.A1031C	p.Q344P	.	.	144	30	124	0	.	826
DFNB31	25861	bcgsc.ca	37	9	117169033	117169033	+	Missense_Mutation	SNP	A	A	G	rs942519	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DFNB31	NM_001173425	exon9	c.T1838C	p.M613T	.	.	86	5	53	0	A|0.511;G|0.489	95
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6588587	6588587	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DNHD1	NM_144666	exon36	c.T11848A	p.S3950T	.	.	142	25	132	0	.	24
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37618218	37618218	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DOPEY2	NM_005128	exon19	c.C3940T	p.L1314L	.	.	117	28	101	0	.	91
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	28650775	28650775	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DSC2	NM_024422	exon14	c.A2167T	p.K723X	.	.	80	13	93	0	.	517
FAM171B	165215	ucsc.edu	37	2	187559047	187559047	+	Silent	SNP	G	G	A	rs73979342		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	FAM171B	NM_177454	exon1	c.G147A	p.Q49Q	.	.	75	14	63	0	G|0.500;A|0.500	141
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	47904363	47904363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	FOXD2	NM_004474	exon1	c.G556C	p.V186L	.	.	268	45	191	0	.	226
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36902221	36902221	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	FOXRED2	NM_001102371	exon2	c.G249C	p.K83N	.	.	119	33	95	0	.	92
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	FRG1B	.	.	.	.	.	.	956	28	872	10	.	22
G6PC2	57818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169757874	169757874	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	G6PC2	NM_021176	exon1	c.A33C	p.I11I	.	.	94	21	80	0	.	91
GBAS	2631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	56049254	56049254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GBAS	NM_001483	exon4	c.C367T	p.Q123X	.	.	184	64	144	0	.	514
GLDC	2731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6558589	6558589	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GLDC	NM_000170	exon17	c.G2022T	p.G674G	.	.	132	25	137	0	.	92
GPR171	29909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150916346	150916346	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GPR171	NM_013308	exon3	c.G828T	p.S276S	.	.	173	22	158	1	.	90
GPRIN2	9721	ucsc.edu	37	10	46999030	46999030	+	Silent	SNP	C	C	T	rs4925989	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GPRIN2	NM_014696	exon3	c.C150T	p.A50A	.	.	24	7	12	0	C|0.500;T|0.500	90
GPX1	2876	broad.mit.edu;bcgsc.ca	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	G	C	rs75404373	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GPX1	.	.	.	.	.	.	19	7	21	0	G|0.333;C|0.667	68
GSE1	23199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	85697087	85697087	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_014615	exon11	c.G2511A	p.Q837Q	.	.	107	26	112	0	.	.
GSTP1	2950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	67352223	67352223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GSTP1	NM_000852	exon4	c.G212A	p.R71H	.	.	533	26	115	0	.	91
HERC2P3	283755	broad.mit.edu	37	15	20644564	20644564	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	HERC2P3	.	.	.	.	.	.	34	6	39	0	.	92
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118955777	118955777	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	HMBS	NM_000190	exon1	c.33+1G>A	.	.	.	110	31	135	0	.	90
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	HRC	NM_002152	exon1	c.T744C	p.D248D	.	.	199	15	176	0	A|0.998;G|0.002	91
KIAA0586	9786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58965663	58965663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KIAA0586	NM_001244189	exon29	c.T4312G	p.F1438V	.	.	148	49	107	0	.	23
KIAA1024	23251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79748973	79748973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KIAA1024	NM_015206	exon2	c.G484T	p.D162Y	.	.	66	14	85	0	.	183
KIR2DL4	3805	bcgsc.ca	37	19	55324635	55324635	+	Silent	SNP	T	T	C	rs649216	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KIR2DL4	NM_001080772	exon6	c.C762C	p.F254F	.	.	180	7	108	1	T|0.653;C|0.347	70
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38935981	38935981	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KRT27	NM_181537	exon4	c.A817T	p.R273W	.	.	80	17	82	0	.	90
KRTAP4-8	728224	ucsc.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_031960	exon1	c.T283A	p.C95S	.	.	17	7	18	0	A|0.500;T|0.500	.
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	76382095	76382095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LMO7	NM_015842	exon7	c.G977A	p.C326Y	.	.	52	8	56	0	.	586
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2939526	2939526	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LPIN2	NM_014646	exon6	c.A774G	p.S258S	.	.	59	15	58	0	.	227
LRRC37A3	374819	ucsc.edu	37	17	62855652	62855652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LRRC37A3	NM_199340	exon11	c.A4612G	p.K1538E	.	.	126	2	129	1	.	90
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40707956	40707956	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LRRK2	NM_198578	exon32	c.T4719G	p.V1573V	.	.	197	50	148	0	.	533
LRSAM1	90678	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130242224	130242224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LRSAM1	NM_001005373	exon14	c.G1010T	p.S337I	.	.	174	34	176	1	.	90
LTN1	26046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30343736	30343736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LTN1	NM_015565	exon7	c.G979T	p.A327S	.	.	113	28	126	0	.	530
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77885584	77885584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAGI2	NM_012301	exon10	c.G1723T	p.D575Y	.	.	479	161	391	0	.	461
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91461902	91461902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAN2A2	NM_006122	exon21	c.G3217A	p.A1073T	.	.	54	10	48	0	.	136
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135309506	135309506	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAP7D3	NM_024597	exon12	c.A1971G	p.Q657Q	.	.	283	46	251	0	.	110
MYO1H	283446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	109879426	109879426	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_001101421	exon25	c.C2497T	p.Q833X	.	.	270	41	207	0	.	.
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76589582	76589582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MYO6	NM_004999	exon21	c.G2123A	p.R708Q	.	.	240	39	210	0	.	92
NASP	4678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46073649	46073649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NASP	NM_002482	exon6	c.G1066T	p.A356S	.	.	339	57	339	0	.	91
NCOA3	8202	bcgsc.ca	37	20	46279830	46279839	+	Frame_Shift_Del	DEL	GCAGCAACAG	GCAGCAACAG	-	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	GCAGCAACAG	GCAGCAACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NCOA3	NM_181659	exon20	c.3756_3765del	p.1252_1255del	.	.	164	4	140	0	.	229
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152506778	152506778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NEB	NM_004543	exon54	c.G7343A	p.R2448H	.	.	215	31	255	1	.	145
NOTCH3	4854	hgsc.bcm.edu	37	19	15291637	15291637	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NOTCH3	NM_000435	exon19	c.G2997T	p.T999T	.	.	96	4	64	0	.	855
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164271585	164271585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NPY5R	NM_006174	exon4	c.C160A	p.L54I	.	.	196	33	165	0	.	523
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73746111	73746111	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NUMB	NM_001005743	exon12	c.T1118G	p.F373C	.	.	218	33	160	0	.	1062
OR2J2	26707	mdanderson.org	37	6	29142054	29142054	+	Silent	SNP	C	C	A	rs3129159	byfrequency;alternate_allele	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR2J2	NM_030905	exon1	c.C642A	p.L214L	.	.	465	78	452	0	C|0.567;G|0.433	68
OR6N2	81442	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158747373	158747373	+	Missense_Mutation	SNP	G	G	A	rs200003269		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR6N2	NM_001005278	exon1	c.C53T	p.A18V	.	.	282	54	322	1	G|0.999;A|0.001	68
OR7A10	390892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14952139	14952139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR7A10	NM_001005190	exon1	c.T551C	p.V184A	.	.	189	20	169	0	.	68
OR7A5	26659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14938783	14938783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR7A5	NM_017506	exon1	c.G271T	p.V91F	.	.	171	8	125	0	.	90
OR8H1	219469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56058048	56058048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR8H1	NM_001005199	exon1	c.G491A	p.R164K	.	.	254	51	158	0	.	71
OTOP3	347741	bcgsc.ca	37	17	72943126	72943126	+	Silent	SNP	G	G	A	rs8066909	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OTOP3	NM_178233	exon6	c.G1176A	p.A392A	.	.	112	6	114	0	G|0.683;A|0.317	69
P2RY4	5030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69478612	69478612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	P2RY4	NM_002565	exon1	c.A863G	p.Y288C	.	.	431	95	474	0	.	540
PAPD7	11044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6754921	6754921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PAPD7	NM_006999	exon13	c.G1492A	p.G498S	.	.	268	51	210	0	.	69
PARP11	57097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	3939151	3939151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PARP11	NM_020367	exon2	c.A52G	p.K18E	.	.	107	19	123	0	.	523
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134072907	134072907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PCDH10	NM_032961	exon1	c.G1612A	p.D538N	.	.	194	44	193	0	.	92
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140755726	140755726	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PCDHGA6	NM_018919	exon1	c.C2076T	p.Y692Y	.	.	85	21	73	0	.	67
PLCB2	5330	bcgsc.ca	37	15	40590134	40590134	+	Silent	SNP	G	G	A	rs2229690	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PLCB2	NM_004573	exon12	c.C1182T	p.S394S	.	.	119	5	128	1	G|0.349;A|0.651	275
PODN	127435	bcgsc.ca	37	1	53535478	53535478	+	Missense_Mutation	SNP	G	G	A	rs1288386	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PODN	NM_153703	exon2	c.G95A	p.R32H	.	.	59	4	58	0	G|0.629;A|0.371	92
RAD9B	144715	hgsc.bcm.edu	37	12	110956742	110956742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RAD9B	NM_152442	exon8	c.A766G	p.K256E	.	.	80	4	38	0	.	228
RALGAPA2	57186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20621445	20621445	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RALGAPA2	NM_020343	exon6	c.G450T	p.L150L	.	.	284	43	222	1	.	24
RBM11	54033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15599354	15599354	+	Missense_Mutation	SNP	G	G	T	rs139439630	byfrequency;alternate_allele	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_144770	exon5	c.G586T	p.D196Y	.	.	434	89	406	0	G|0.988;A|0.012	.
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3318591	3318591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RGS12	NM_002926	exon2	c.G694A	p.V232M	.	.	199	39	167	0	.	226
RNASEK-C17orf49	100529209	broad.mit.edu;ucsc.edu	37	17	6917669	6917669	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	.	.	.	.	.	.	38	7	28	0	.	.
RNF113A	7737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119005302	119005302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RNF113A	NM_006978	exon1	c.A275T	p.E92V	.	.	167	10	178	0	.	129
SACS	26278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	23912521	23912521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SACS	NM_014363	exon10	c.T5494A	p.F1832I	.	.	89	8	91	0	.	298
SEMA4A	64218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156146462	156146462	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SEMA4A	NM_001193300	exon15	c.G1960C	p.A654P	.	.	143	34	151	0	.	228
SPRR2E	6704	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153066128	153066128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SPRR2E	NM_001024209	exon2	c.G100A	p.E34K	.	.	184	44	179	1	.	69
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	110	53	105	0	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	116	21	144	1	A|0.010;C|0.001;T|0.988	45
SULT2B1	6820	bcgsc.ca	37	19	49079246	49079246	+	Silent	SNP	C	C	T	rs2544794	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SULT2B1	NM_177973	exon2	c.C120T	p.P40P	.	.	180	6	128	0	C|0.852;T|0.148	91
SYP	6855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49049852	49049852	+	Silent	SNP	C	C	A	rs140804164	alternate_allele	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SYP	NM_003179	exon5	c.G492T	p.L164L	.	.	271	43	298	0	C|1.000;T|0.000	556
TBC1D3P1-DHX40P1	653645	broad.mit.edu	37	17	58066651	58066651	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	.	.	.	.	.	.	193	6	161	0	.	.
TBX2	6909	broad.mit.edu	37	17	59479224	59479224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TBX2	NM_005994	exon2	c.G575T	p.S192I	.	.	136	7	108	1	.	226
TCOF1	6949	bcgsc.ca	37	5	149755421	149755421	+	Silent	SNP	A	A	G	rs2071239	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TCOF1	NM_001135243	exon12	c.A1842G	p.S614S	.	.	266	7	235	2	A|0.832;G|0.168	155
TGS1	96764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56699053	56699053	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TGS1	NM_024831	exon4	c.596delA	p.E199fs	.	.	95	39	83	0	.	227
TMPRSS15	5651	bcgsc.ca	37	21	19726138	19726138	+	Missense_Mutation	SNP	G	G	A	rs34162864	byfrequency	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TMPRSS15	NM_002772	exon9	c.C923T	p.S308F	.	.	206	9	151	0	G|0.986;A|0.014	160
TMUB2	79089	broad.mit.edu	37	17	42266738	42266738	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TMUB2	NM_001076674	exon3	c.T384G	p.G128G	.	.	71	17	67	7	.	91
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	142499740	142499740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TRPC1	NM_001251845	exon6	c.C829T	p.R277W	.	.	83	4	106	0	.	92
TSPEAR	54084	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45929169	45929169	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TSPEAR	NM_144991	exon10	c.A1667C	p.N556T	.	.	225	42	268	2	.	244
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28378887	28378887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_001145418	exon23	c.G6768C	p.E2256D	.	.	185	66	141	0	.	.
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33486549	33486549	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	UNC45B	NM_001267052	exon8	c.T964A	p.Y322N	.	.	76	16	71	0	.	157
USP6	9098	hgsc.bcm.edu;ucsc.edu	37	17	5042895	5042895	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	USP6	NM_004505	exon14	c.G1424A	p.W475X	.	.	46	8	29	0	.	662
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72874667	72874667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	UTP15	NM_032175	exon10	c.G1136T	p.R379I	.	.	151	47	116	0	.	90
WAS	7454	broad.mit.edu;mdanderson.org	37	X	48547190	48547190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	WAS	NM_000377	exon10	c.G1073T	p.G358V	.	.	19	5	17	0	.	563
ZC3H7B	23264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41752683	41752683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZC3H7B	NM_017590	exon22	c.G2552C	p.S851T	.	.	117	10	93	0	.	90
ZDHHC8P1	150244	broad.mit.edu	37	22	23736241	23736241	+	RNA	SNP	G	G	A	rs34481096	bycluster;byfrequency;by1000genomes	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	.	.	.	.	.	.	87	4	58	0	G|0.847;A|0.153	.
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	16	72993867	72993867	+	Missense_Mutation	SNP	G	G	A	rs200390317		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZFHX3	NM_006885	exon2	c.C178T	p.R60C	.	.	28	9	21	0	G|0.999;A|0.000	72
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52198139	52198139	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZNF217	NM_006526	exon1	c.C1227G	p.T409T	.	.	76	10	58	0	.	723
ZNF410	57862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74364881	74364881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZNF410	NM_001242924	exon6	c.C547T	p.L183F	.	.	198	65	130	2	.	91
ZNF814	730051	bcgsc.ca	37	19	58385873	58385873	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_001144989	exon3	c.A885G	p.K295K	.	.	80	18	51	2	.	.
ZNF99	7652	broad.mit.edu;ucsc.edu	37	19	22940429	22940429	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZNF99	NM_001080409	exon4	c.G2282C	p.C761S	.	.	15	4	13	0	.	24
OR5M10	390167	hgsc.bcm.edu	37	11	56344846	56344847	+	Missense_Mutation	DNP	TT	TT	AG	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	.	.	.	p.M118L	.	.	.	.	.	.	.	
