Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139916820	139916820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCA2	NM_212533	exon6	c.C640T	p.R214C	.	.	58	17	73	0	.	90
ABCB1	5243	bcgsc.ca	37	7	87160618	87160618	+	Missense_Mutation	SNP	A	A	C	rs2032582	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCB1	NM_000927	exon22	c.T2677G	p.S893A	.	.	82	4	94	0	T|0.075;G|0.139;C|0.519;A|0.267	582
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89039368	89039368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCG2	NM_004827	exon7	c.C734G	p.P245R	.	.	120	49	188	0	.	90
ADAMTSL5	339366	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1506875	1506875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ADAMTSL5	NM_213604	exon10	c.G905A	p.R302Q	.	.	87	34	99	1	.	90
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110560140	110560140	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	AHCYL1	NM_006621	exon10	c.T987A	p.A329A	.	.	92	28	152	0	.	91
AKNA	80709	bcgsc.ca	37	9	117110046	117110046	+	Missense_Mutation	SNP	C	C	T	rs3748178	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	AKNA	NM_030767	exon16	c.G3356A	p.R1119Q	.	.	23	4	26	0	C|0.891;T|0.109	94
AKR1C4	1109	bcgsc.ca	37	10	5247784	5247784	+	Missense_Mutation	SNP	C	C	G	rs3829125	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	AKR1C4	NM_001818	exon4	c.C434G	p.S145C	.	.	175	7	211	2	C|0.697;G|0.303	91
ALPK1	80216	bcgsc.ca	37	4	113351822	113351822	+	Silent	SNP	G	G	A	rs61747381	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ALPK1	NM_001102406	exon11	c.G1119A	p.G373G	.	.	136	6	187	0	G|0.963;A|0.037	337
ARHGAP44	9912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12852526	12852526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ARHGAP44	NM_014859	exon11	c.G931A	p.V311M	.	.	65	25	72	0	.	90
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34622422	34622422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ARID3C	NM_001017363	exon5	c.G970C	p.V324L	.	.	65	17	99	0	.	91
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	101296578	101296578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ASCC3	NM_006828	exon4	c.A247G	p.T83A	.	.	35	16	40	0	.	96
ATP10A	57194	ucsc.edu;bcgsc.ca	37	15	25924907	25924907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ATP10A	NM_024490	exon21	c.G4081A	p.V1361I	.	.	35	4	56	0	.	139
ATP6	0	broad.mit.edu;bcgsc.ca	37	MT	9152	9152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	ENST00000361899	exon1	c.T626C	p.I209T	.	.	88	29	26	0	.	.
BACE2	25825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42617961	42617961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BACE2	NM_138992	exon6	c.G955A	p.V319M	.	.	138	51	155	0	.	92
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79414175	79414175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BAHCC1	.	.	.	.	.	.	38	16	50	0	.	23
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70751716	70751716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BDP1	NM_018429	exon1	c.G12T	p.R4S	.	.	44	20	69	0	.	92
BEST1	7439	bcgsc.ca	37	11	61727438	61727438	+	Silent	SNP	C	C	T	rs1801390	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BEST1	NM_004183	exon9	c.C1023T	p.P341P	.	.	102	5	147	0	C|0.977;T|0.023	90
BLM	641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91346865	91346865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BLM	NM_000057	exon18	c.A3473G	p.D1158G	.	.	125	38	177	1	.	664
BPI	671	ucsc.edu;bcgsc.ca	37	20	36937389	36937389	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BPI	NM_001725	exon3	c.G315T	p.V105V	.	.	279	118	323	2	.	94
BPIFB1	92747	broad.mit.edu	37	20	31889209	31889209	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_033197	exon9	c.G918A	p.L306L	.	.	85	4	107	1	.	.
BPNT1	10380	ucsc.edu	37	1	220231263	220231263	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BPNT1	.	.	.	.	.	.	159	1	124	1	.	91
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca	37	10	50533616	50533616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C10orf71	NM_001135196	exon3	c.G3026A	p.G1009D	.	.	240	98	341	0	.	90
C11orf1	64776	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111753099	111753099	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C11orf1	NM_022761	exon2	c.A53T	p.N18I	.	.	119	40	213	1	.	90
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu	37	1	11008624	11008624	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C1orf127	NM_001170754	exon12	c.1568delC	p.P523fs	.	.	131	10	170	0	.	91
C1orf168	199920	ucsc.edu;bcgsc.ca	37	1	57258345	57258345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C1orf168	NM_001004303	exon2	c.A141T	p.Q47H	.	.	143	48	200	2	.	95
C6orf62	81688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24714570	24714570	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C6orf62	NM_030939	exon3	c.T405C	p.S135S	.	.	98	27	168	0	.	90
C9orf72	203228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27566949	27566949	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C9orf72	NM_018325	exon2	c.G170C	p.G57A	.	.	162	66	204	1	.	517
CACNA1H	8912	mdanderson.org	37	16	1262101	1262101	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CACNA1H	NM_021098	exon25	c.G4722A	p.E1574E	.	.	12	5	13	0	.	67
CASQ1	844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160165717	160165717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	CASQ1,brain,glioma,-1	CASQ1	NM_001231	exon6	c.G682A	p.E228K	.	.	177	27	135	0	.	90
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92935245	92935245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC132	NM_017667	exon18	c.G1558A	p.G520S	.	.	163	57	239	0	.	90
CCDC30	728621	bcgsc.ca	37	1	43047057	43047057	+	Silent	SNP	A	A	G	rs12037518	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC30	NM_001080850	exon8	c.A1092G	p.E364E	.	.	142	8	209	1	A|0.811;G|0.189	90
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111342552	111342552	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC63	NM_152591	exon11	c.C1503T	p.P501P	.	.	118	40	173	0	.	134
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207940538	207940538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CD46	NM_172352	exon6	c.A854C	p.K285T	.	.	325	137	239	0	.	963
CDK5R1	8851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30814788	30814788	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CDK5R1	NM_003885	exon2	c.G150A	p.L50L	.	.	252	87	337	0	.	651
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50857589	50857589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CHAT	NM_020549	exon10	c.C1418A	p.S473Y	.	.	162	79	187	0	.	514
CILP2	148113	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	19655986	19655986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CILP2	NM_153221	exon8	c.G2632A	p.V878M	.	.	15	8	15	1	.	91
CIRBP	1153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1271158	1271158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CIRBP	NM_001280	exon3	c.G123C	p.R41S	.	.	264	82	396	0	.	226
COL4A1	1282	bcgsc.ca	37	13	110833702	110833702	+	Silent	SNP	C	C	T	rs16975492	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	COL4A1	NM_001845	exon29	c.G2130A	p.P710P	.	.	252	7	272	2	C|0.691;T|0.309	654
COL6A5	256076	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130098358	130098358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_153264	exon4	c.G765T	p.Q255H	.	.	113	56	143	1	.	.
CRB1	23418	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197316508	197316508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CRB1	NM_001257966	exon4	c.C887T	p.T296I	.	.	243	41	162	2	.	161
CRISP3	10321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49698949	49698949	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CRISP3	NM_001190986	exon7	c.T606C	p.N202N	.	.	221	91	258	0	.	92
CRP	1401	bcgsc.ca	37	1	159683438	159683438	+	Silent	SNP	C	C	G	rs1800947	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CRP	NM_000567	exon2	c.G552C	p.L184L	.	.	387	11	230	1	C|0.642;G|0.358	91
CSMD2	114784	bcgsc.ca	37	1	34189867	34189867	+	Silent	SNP	C	C	T	rs35450508	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CSMD2	NM_052896	exon19	c.G2811A	p.S937S	.	.	151	6	295	4	C|0.979;T|0.021	103
CSNK1G1	53944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	64508895	64508895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CSNK1G1	NM_022048	exon5	c.G310A	p.V104M	.	.	150	64	237	0	.	319
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	rs28931588	bycluster	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94T	p.D32Y	.	.	301	109	355	1	G|1.000;T|0.000	24361
CXADRP3	440224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	14478332	14478332	+	RNA	SNP	C	C	T	rs71217361		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	.	.	.	.	.	.	197	64	316	0	C|0.500;T|0.500	.
DCAF12	25853	bcgsc.ca	37	9	34107505	34107505	+	Missense_Mutation	SNP	C	C	T	rs11557154	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF12	NM_015397	exon3	c.G392A	p.R131Q	.	.	100	5	168	0	C|0.846;T|0.154	90
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125685361	125685361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF12L1	NM_178470	exon1	c.C1231T	p.L411F	.	.	281	132	218	1	.	132
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69522154	69522154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF5	NM_003861	exon9	c.G1249T	p.A417S	.	.	117	54	167	0	.	91
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31586176	31586176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DENND5B	NM_144973	exon8	c.G2019T	p.W673C	.	.	86	33	100	0	.	24
DEPDC5	9681	broad.mit.edu	37	22	32302445	32302445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DEPDC5	NM_001242896	exon43	c.A4774G	p.T1592A	.	.	162	7	245	1	.	519
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47861354	47861354	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DHX34	NM_014681	exon4	c.C1249T	p.L417L	.	.	39	16	50	0	.	231
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52360896	52360896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAH1	NM_015512	exon5	c.C727G	p.L243V	.	.	228	60	325	0	.	67
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7726895	7726895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAH2	NM_020877	exon73	c.G11278T	p.D3760Y	.	.	214	83	244	0	.	102
DNAI2	64446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72281284	72281284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAI2	NM_001172810	exon3	c.C289T	p.R97W	.	.	138	7	204	0	.	92
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	111634195	111634195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DOCK4	NM_014705	exon5	c.T310A	p.Y104N	.	.	61	17	94	0	.	26
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DSPP	NM_014208	exon5	c.C3213A	p.D1071E	.	.	339	12	465	0	.	90
DSPP	1834	bcgsc.ca	37	4	88537459	88537459	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DSPP	NM_014208	exon5	c.C3645T	p.D1215D	.	.	437	16	512	7	.	90
DUSP1	1843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172197268	172197268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DUSP1	NM_004417	exon2	c.A409C	p.S137R	.	.	202	79	281	1	.	659
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	EP400	NM_015409	exon47	c.G8175A	p.Q2725Q	.	.	140	5	181	1	.	520
ETFB	2109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51857606	51857606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ETFB	NM_001014763	exon1	c.G287A	p.C96Y	.	.	42	18	99	1	.	90
FAM104B	90736	broad.mit.edu	37	X	55172537	55172537	+	Nonsense_Mutation	SNP	G	G	A	rs1047054	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM104B	NM_001166700	exon3	c.C331T	p.R111X	.	.	9	2	33	0	G|0.500;A|0.500	130
FAM192A	80011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57197926	57197926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM192A	NM_024946	exon6	c.T534A	p.D178E	.	.	168	67	228	0	.	90
FAM46D	169966	ucsc.edu;bcgsc.ca	37	X	79698052	79698052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM46D	NM_001170574	exon5	c.G14A	p.R5K	.	.	238	212	203	2	.	130
FAM76B	143684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	95522613	95522613	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM76B	NM_144664	exon1	c.C30A	p.T10T	.	.	70	28	57	0	.	90
FAM83H	286077	hgsc.bcm.edu	37	8	144808763	144808763	+	Silent	SNP	G	G	A	rs181099241	by1000genomes	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM83H	NM_198488	exon5	c.C2868T	p.S956S	.	.	8	7	1	0	G|0.999;A|0.001	92
FANCI	55215	bcgsc.ca	37	15	89858602	89858602	+	Silent	SNP	T	T	C	rs1138465	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FANCI	NM_001113378	exon37	c.T3906C	p.G1302G	.	.	176	8	248	0	T|0.586;C|0.414	92
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150911280	150911280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAT2	NM_001447	exon13	c.G9679T	p.V3227L	.	.	14	9	21	0	.	96
FAT3	120114	ucsc.edu;bcgsc.ca	37	11	92086129	92086129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAT3	NM_001008781	exon1	c.T851C	p.V284A	.	.	199	72	267	3	.	73
FCGBP	8857	bcgsc.ca	37	19	40374023	40374023	+	Missense_Mutation	SNP	C	C	T	rs71334845	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FCGBP	NM_003890	exon26	c.G12055A	p.V4019M	.	.	906	19	1232	10	CGA|0.500;TGC|0.500	98
GAL	51083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68458398	68458398	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GAL	NM_015973	exon6	c.C315G	p.L105L	.	.	55	19	94	0	.	90
GDPD2	54857	bcgsc.ca	37	X	69649468	69649468	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GDPD2	NM_017711	exon11	c.C1062T	p.F354F	.	.	356	179	291	4	.	132
GLRX3	10539	bcgsc.ca	37	10	131959150	131959150	+	Missense_Mutation	SNP	C	C	T	rs2274217	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GLRX3	NM_006541	exon4	c.C367T	p.P123S	.	.	106	5	147	2	C|0.799;T|0.201	22
GLTSCR1L	23506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42832697	42832697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_015349	exon12	c.C2753A	p.S918Y	.	.	78	32	77	0	.	.
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58607044	58607044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GLYATL2	NM_145016	exon2	c.T42C	p.Y14Y	.	.	88	38	166	0	.	92
GNAQ	2776	bcgsc.ca	37	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GNAQ	NM_002072	exon2	c.A286T	p.T96S	.	.	138	9	166	1	.	3808
GPR148	344561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131486786	131486786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GPR148	NM_207364	exon1	c.T62A	p.L21H	.	.	317	110	377	0	.	91
GRXCR1	389207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965023	42965023	+	Missense_Mutation	SNP	C	C	A	rs192948915	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GRXCR1	NM_001080476	exon2	c.C499A	p.R167S	.	.	90	44	133	2	C|0.999;T|0.000	23
GYG2	8908	bcgsc.ca	37	X	2779633	2779633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GYG2	NM_003918	exon9	c.C1001T	p.S334L	.	.	62	5	77	0	.	132
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240056082	240056082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HDAC4	NM_006037	exon11	c.C1153T	p.L385F	.	.	28	11	51	0	.	291
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37256043	37256043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HEATR5B	NM_019024	exon23	c.G3382A	p.G1128R	.	.	109	53	118	0	.	142
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28491165	28491165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HERC2	NM_004667	exon23	c.A3439G	p.K1147E	.	.	110	46	123	0	.	234
HTRA4	203100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38831805	38831805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HTRA4	NM_153692	exon1	c.C23T	p.T8I	.	.	73	32	103	0	.	90
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70896085	70896085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HYDIN	NM_001270974	exon69	c.C11643G	p.H3881Q	.	.	111	40	184	0	.	92
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105011411	105011411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	IL1RAPL2,NS,carcinoma,0	IL1RAPL2	NM_017416	exon11	c.C1818A	p.F606L	.	.	260	225	201	0	.	194
INSL6	11172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	5164195	5164195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	INSL6	NM_007179	exon2	c.G360T	p.K120N	.	.	43	13	54	0	.	90
INTS8	55656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95892419	95892419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	INTS8	NM_017864	exon27	c.G2945A	p.R982K	.	.	166	38	146	0	.	90
IPO13	9670	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44424562	44424562	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	IPO13	NM_014652	exon11	c.2028+1G>A	.	.	.	130	45	192	2	.	226
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35166772	35166772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ITSN1	NM_001001132	exon17	c.G1952T	p.R651I	.	.	134	46	178	1	.	94
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139824552	139824552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	JHDM1D	NM_030647	exon7	c.C920T	p.T307I	.	.	65	20	91	0	.	91
JPH2	57158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42788302	42788302	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	JPH2	NM_020433	exon2	c.C1125G	p.R375R	.	.	18	4	21	0	.	91
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	73480055	73480055	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KCNB2	NM_004770	exon2	c.86delG	p.R29fs	.	.	155	85	147	0	.	158
KIF18A	81930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	28116256	28116256	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KIF18A	NM_031217	exon3	c.C417T	p.H139H	.	.	150	51	262	2	.	92
KLHL6	89857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183217548	183217548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KLHL6	NM_130446	exon4	c.G977T	p.G326V	.	.	126	46	141	2	.	93
KRTAP4-12	83755	ucsc.edu;mdanderson.org	37	17	39280057	39280057	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_031854	exon1	c.T318C	p.C106C	.	.	12	4	11	0	.	.
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153129931	153129931	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	L1CAM	NM_000425	exon24	c.A3168G	p.E1056E	.	.	90	44	98	0	.	138
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225594411	225594411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LBR	NM_194442	exon11	c.A1438T	p.N480Y	.	.	294	123	205	0	.	228
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	109084858	109084858	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LEF1	NM_016269	exon4	c.281-1G>A	.	.	.	90	26	165	0	.	721
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96342142	96342142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LNPEP	NM_005575	exon11	c.A1958G	p.H653R	.	.	173	59	228	0	.	229
LTBP4	8425	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	41133674	41133674	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LTBP4	.	.	.	.	.	.	16	11	14	0	.	93
LYAR	55646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4283593	4283593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LYAR	NM_017816	exon4	c.A154G	p.I52V	.	.	188	82	214	0	.	90
MAML3	55534	hgsc.bcm.edu	37	4	140811114	140811114	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MAML3	NM_018717	exon2	c.G1476A	p.Q492Q	.	.	92	13	112	0	.	455
MAML3	55534	mdanderson.org	37	4	140811108	140811108	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MAML3	NM_018717	exon2	c.G1482A	p.Q494Q	.	.	90	17	111	1	.	455
MAST1	22983	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12969450	12969450	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MAST1	NM_014975	exon12	c.G1263A	p.V421V	.	.	160	62	169	1	.	523
MCM4	4173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48874204	48874204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MCM4	NM_182746	exon3	c.G199A	p.V67M	.	.	126	55	131	0	.	230
MGA	23269	broad.mit.edu	37	15	42042370	42042370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MGA	NM_001164273	exon17	c.G6565A	p.A2189T	.	.	64	3	65	0	.	522
MRAP2	112609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84798909	84798909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MRAP2	NM_138409	exon4	c.C327G	p.N109K	.	.	107	40	153	0	.	92
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085930	9085930	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MUC16	NM_024690	exon1	c.T5885A	p.M1962K	.	.	186	62	280	1	.	566
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76595796	76595796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYO6	NM_004999	exon24	c.G2492A	p.R831K	.	.	113	50	180	0	.	92
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72189982	72189982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYO9A	NM_006901	exon25	c.C4862G	p.S1621C	.	.	264	115	285	1	.	93
MYT1	4661	broad.mit.edu	37	20	62871200	62871200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYT1	NM_004535	exon22	c.T3181C	p.S1061P	.	.	79	5	99	1	.	704
NACAD	23148	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124284	45124284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_001146334	exon2	c.G1495C	p.A499P	.	.	84	27	126	2	.	.
NADSYN1	55191	bcgsc.ca	37	11	71169547	71169547	+	Missense_Mutation	SNP	G	G	C	rs2276360	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NADSYN1	NM_018161	exon3	c.G220C	p.V74L	.	.	152	6	289	1	G|0.448;C|0.552	92
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	133540419	133540419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_207363	exon14	c.C3965G	p.S1322C	.	.	172	10	198	1	.	.
NEK9	91754	ucsc.edu	37	14	75585605	75585605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NEK9	NM_033116	exon5	c.G558T	p.K186N	.	.	38	4	46	0	.	359
NPAP1	23742	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	24923341	24923341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_018958	exon1	c.C2327A	p.A776D	.	.	56	22	73	1	.	.
NRG3	10718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	83635708	83635708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NRG3	NM_001165972	exon1	c.C612A	p.S204R	.	.	75	33	99	1	.	522
NSUN3	63899	hgsc.bcm.edu	37	3	93812983	93812983	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NSUN3	NM_022072	exon4	c.467-1G>T	.	.	.	80	4	82	0	.	91
NXPH4	11247	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57618996	57618996	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NXPH4	NM_007224	exon2	c.T393C	p.H131H	.	.	59	15	62	1	.	68
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228451986	228451986	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OBSCN	NM_001271223	exon18	c.G5307T	p.V1769V	.	.	161	86	138	0	.	403
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228467000	228467000	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OBSCN	NM_001271223	exon32	c.G8538T	p.T2846T	.	.	182	37	158	0	.	403
OR2L5	81466	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	248185795	248185795	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_001258284	exon1	c.T546A	p.A182A	.	.	510	112	369	0	.	.
OR2T34	127068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248737387	248737387	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR2T34	NM_001001821	exon1	c.C672G	p.T224T	.	.	703	164	576	1	.	69
OR2T6	254879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248551789	248551789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR2T6	NM_001005471	exon1	c.A880G	p.N294D	.	.	397	76	374	2	.	71
OR51L1	119682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5021109	5021109	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR51L1	NM_001004755	exon1	c.G897A	p.K299K	.	.	95	40	153	0	.	69
OR6N2	81442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158746653	158746653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR6N2	NM_001005278	exon1	c.T773A	p.M258K	.	.	507	132	337	0	.	68
PARP11	57097	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	3931251	3931251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PARP11	NM_020367	exon5	c.G417T	p.Q139H	.	.	82	37	104	1	.	523
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	58298754	58298754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDH17	NM_001040429	exon4	c.G2806T	p.E936X	.	.	94	40	92	0	.	97
PCDHA13	56136	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	140264081	140264081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDHA13	NM_031865	exon1	c.G2228T	p.S743I	.	.	46	14	64	0	.	75
PCDHA5	56143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140201921	140201921	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDHA5	NM_018908	exon1	c.A561C	p.E187D	.	.	66	28	91	1	.	137
PCDHB13	56123	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	140594941	140594941	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDHB13	NM_018933	exon1	c.G1246T	p.E416X	.	.	205	75	243	3	.	93
PDIA4	9601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148703056	148703056	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PDIA4	NM_004911	exon8	c.G1221A	p.K407K	.	.	65	21	99	0	.	524
PDPR	55066	bcgsc.ca	37	16	70190401	70190401	+	Silent	SNP	C	C	T	rs6499302	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PDPR	NM_017990	exon19	c.C2259T	p.D753D	.	.	84	7	123	0	C|0.645;T|0.355	135
PHEX	5251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	22117127	22117127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PHEX	NM_000444	exon9	c.G937A	p.D313N	.	.	34	21	31	0	.	132
PHF8	23133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54022132	54022132	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PHF8	NM_001184896	exon12	c.G1425A	p.L475L	.	.	33	24	80	0	.	133
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47930177	47930177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKD1L1	NM_138295	exon16	c.C2638T	p.R880W	.	.	92	34	87	0	.	145
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110393732	110393732	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKHD1L1	NM_177531	exon3	c.A297G	p.T99T	.	.	75	18	77	0	.	145
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201282409	201282409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKP1	NM_001005337	exon3	c.G422T	p.G141V	.	.	328	137	265	1	.	92
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81925146	81925146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PLCG2	NM_002661	exon11	c.G937A	p.D313N	.	.	239	81	335	0	.	892
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43980783	43980783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PLEKHH2	NM_172069	exon25	c.G3679A	p.G1227R	.	.	134	49	164	0	.	92
POM121L12	285877	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	53103689	53103689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_182595	exon1	c.G325T	p.G109W	.	.	17	6	19	0	.	.
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75615486	75615486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	POR	NM_000941	exon15	c.C1825G	p.Q609E	.	.	151	55	189	0	.	23
PPP2R3A	5523	bcgsc.ca	37	3	135745762	135745762	+	Missense_Mutation	SNP	C	C	T	rs9826032	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PPP2R3A	NM_002718	exon3	c.C2084T	p.P695L	.	.	122	5	158	0	C|0.992;T|0.008	662
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69032483	69032483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PREX2	NM_024870	exon29	c.A3557G	p.D1186G	.	.	111	51	121	0	.	390
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48697806	48697806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PRKDC	.	.	.	.	.	.	77	34	112	0	.	1515
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134351321	134351322	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PRRC2B	NM_013318	exon15	c.3805_3806insG	p.R1269fs	.	.	73	25	95	0	.	24
RBFOX1	54715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	7568314	7568314	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RBFOX1	NM_145891	exon2	c.C253T	p.L85L	.	.	91	39	113	0	.	92
RNU6-76	100873777	bcgsc.ca	37	16	33497958	33497958	+	RNA	SNP	C	C	T	rs143875577		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	.	.	.	.	.	.	182	28	223	10	.	.
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78688976	78688976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ROBO1	NM_002941	exon22	c.C2955A	p.N985K	.	.	123	48	150	0	.	67
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68910330	68910330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RPE65	NM_000329	exon5	c.G379A	p.E127K	.	.	73	22	119	0	.	91
RXRG	6258	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	165386378	165386378	+	Silent	SNP	C	C	A	rs200365240	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RXRG	NM_006917	exon4	c.G522T	p.T174T	.	.	452	91	340	1	C|0.999;T|0.001	186
SACS	26278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23907796	23907796	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SACS	NM_014363	exon10	c.C10219T	p.L3407L	.	.	58	19	68	1	.	298
SDHAF2	54949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	61197634	61197634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SDHAF2	NM_017841	exon1	c.G16T	p.V6L	.	.	58	12	91	0	.	92
SEMA3A	10371	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83610674	83610674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SEMA3A	NM_006080	exon14	c.G1615T	p.G539C	.	.	160	50	256	1	.	156
SEMA3D	223117	bcgsc.ca	37	7	84628989	84628989	+	Missense_Mutation	SNP	T	T	G	rs7800072	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SEMA3D	NM_152754	exon17	c.A2101C	p.K701Q	.	.	271	9	319	3	T|0.671;G|0.329	138
SETX	23064	bcgsc.ca	37	9	135218103	135218103	+	Missense_Mutation	SNP	A	A	C	rs145438764	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SETX	NM_015046	exon5	c.T472G	p.L158V	.	.	59	4	81	0	A|0.996;C|0.004	93
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50376662	50376662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SHROOM4	NM_020717	exon4	c.C2411T	p.P804L	.	.	91	72	114	0	.	131
SI	6476	broad.mit.edu;bcgsc.ca	37	3	164724614	164724614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SI	NM_001041	exon37	c.C4396A	p.P1466T	.	.	202	8	213	0	.	104
SKIDA1	387640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21805067	21805067	+	Missense_Mutation	SNP	T	T	C	rs199700139		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_207371	exon4	c.A1685G	p.N562S	.	.	72	26	133	1	.	.
SLC38A1	81539	broad.mit.edu	37	12	46601366	46601366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLC38A1	NM_030674	exon7	c.G427A	p.G143S	.	.	80	5	120	0	.	518
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	87229802	87229802	+	Nonsense_Mutation	SNP	A	A	T	rs201235225	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLC7A13	NM_138817	exon3	c.T1076A	p.L359X	.	.	99	29	97	0	A|0.999;G|0.001	90
SLC9B1	150159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	103912818	103912818	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_001100874	exon2	c.A51G	p.Q17Q	.	.	19	9	18	0	.	.
SLCO4A1	28231	broad.mit.edu	37	20	61296307	61296307	+	Silent	SNP	G	G	A	rs183755475		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLCO4A1	NM_016354	exon6	c.G1143A	p.K381K	.	.	88	4	148	1	G|0.999;A|0.001	91
SLCO5A1	81796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70591818	70591818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLCO5A1	NM_030958	exon8	c.C1819T	p.R607C	.	.	164	41	183	1	.	94
SLIT2	9353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20512134	20512134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	SLIT2,brain,glioma,-2	SLIT2	NM_004787	exon10	c.A931G	p.T311A	.	.	20	4	41	0	.	521
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72879295	72879295	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SMC5	NM_015110	exon2	c.G261T	p.S87S	.	.	170	69	291	0	.	229
SNCA	6622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90756778	90756778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SNCA	NM_000345	exon2	c.G41A	p.G14E	.	.	154	60	200	0	.	90
SOLH	6650	ucsc.edu;mdanderson.org	37	16	601376	601376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SOLH	NM_005632	exon8	c.G2141A	p.R714H	.	.	15	3	35	0	.	523
SOX21	11166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	95364066	95364066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SOX21	NM_007084	exon1	c.C238T	p.R80W	.	.	154	63	164	0	.	514
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22675715	22675715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPAG6	NM_172242	exon5	c.G505T	p.V169F	.	.	101	26	140	0	.	153
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24864810	24864810	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPATA13	NM_001166271	exon9	c.T2868C	p.Y956Y	.	.	185	78	276	0	.	229
SPHKAP	80309	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	228881311	228881311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPHKAP	NM_030623	exon7	c.C4259A	p.S1420X	.	.	117	48	150	1	.	167
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	227	123	174	0	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	197	45	236	1	A|0.010;C|0.001;T|0.988	45
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158604337	158604337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPTA1	NM_003126	exon39	c.C5561T	p.T1854I	.	.	134	56	125	0	.	142
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65260364	65260364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPTB	NM_001024858	exon13	c.C2017T	p.L673F	.	.	183	77	244	0	.	100
SVEP1	79987	bcgsc.ca	37	9	113275227	113275227	+	Missense_Mutation	SNP	C	C	T	rs10980419	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SVEP1	NM_153366	exon5	c.G1282A	p.G428S	.	.	159	7	241	0	C|0.956;T|0.044	75
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29994582	29994582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TAOK2	NM_004783	exon12	c.C1189T	p.R397W	.	.	54	22	60	0	.	521
TBL3	10607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2026901	2026901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TBL3	NM_006453	exon14	c.C1379T	p.T460I	.	.	113	38	195	0	.	90
TBX6	6911	mdanderson.org	37	16	30097856	30097856	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TBX6	NM_004608	exon8	c.G1074A	p.G358G	.	.	17	3	26	0	.	92
TEKT3	64518	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15234365	15234365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TEKT3	NM_031898	exon3	c.A538G	p.R180G	.	.	93	34	94	1	.	92
TEKT4P2	100132288	broad.mit.edu	37	21	9908253	9908253	+	RNA	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	.	.	.	.	.	.	16	5	22	0	.	.
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	1545384	1545384	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TELO2	NM_016111	exon3	c.G373C	p.A125P	.	.	14	7	19	0	.	90
TMEM71	137835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133769495	133769495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TMEM71	NM_144649	exon3	c.C86T	p.T29M	.	.	129	37	154	1	.	92
TRIM48	79097	bcgsc.ca	37	11	55032582	55032582	+	Missense_Mutation	SNP	T	T	C	rs61894887	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TRIM48	NM_024114	exon2	c.T251C	p.I84T	.	.	658	14	893	8	T|0.961;C|0.039	130
TYMP	1890	mdanderson.org	37	22	50968009	50968009	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TYMP	NM_001257989	exon2	c.C130T	p.R44X	.	.	44	17	51	1	.	23
UBE2F-SCLY	0	ucsc.edu	37	2	239002596	239002596	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	.	.	.	.	.	.	134	64	166	0	.	.
UNC80	285175	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210841642	210841642	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	UNC80	NM_032504	exon57	c.G8580A	p.L2860L	.	.	125	40	153	2	.	90
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	31205167	31205167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	USPL1	NM_005800	exon4	c.A424T	p.N142Y	.	.	67	22	70	0	.	524
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184182073	184182073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	WWC2	NM_024949	exon11	c.A1297G	p.S433G	.	.	81	33	97	0	.	93
ZMIZ1	57178	bcgsc.ca	37	10	81065938	81065938	+	Silent	SNP	C	C	T	rs148342874	byfrequency	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZMIZ1	NM_020338	exon22	c.C2505T	p.D835D	.	.	102	5	142	0	C|0.989;T|0.011	292
ZNF37A	7587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38406925	38406925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF37A	NM_003421	exon7	c.G846T	p.Q282H	.	.	33	11	57	0	.	90
ZNF423	23090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49671538	49671538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF423	NM_015069	exon4	c.A1525C	p.N509H	.	.	84	32	110	1	.	228
ZNF440	126070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11942559	11942559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF440	NM_152357	exon4	c.C568G	p.H190D	.	.	176	78	226	2	.	68
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22362974	22362974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF676	NM_001001411	exon3	c.C1545G	p.S515R	.	.	27	13	26	0	.	90
