Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	156918883	156918885	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ADAM19	NM_033274	exon17	c.1944_1946del	p.648_649del	.	.	158	44	209	0	.	294
AKAP8	10270	broad.mit.edu;mdanderson.org	37	19	15484748	15484748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	AKAP8	NM_005858	exon4	c.G220T	p.A74S	.	.	32	9	26	0	.	290
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40742001	40742001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	AKT2	NM_001626	exon11	c.A971G	p.D324G	.	.	86	24	64	0	.	978
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121783834	121783834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANAPC5	NM_016237	exon4	c.398delG	p.G133fs	.	.	92	19	125	0	.	290
ANGPTL1	9068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178822882	178822882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANGPTL1	NM_004673	exon4	c.T864C	p.H288H	.	.	112	19	113	0	.	90
ANKRD20A19P	400110	broad.mit.edu	37	13	24520186	24520186	+	RNA	SNP	G	G	A	rs140235168	by1000genomes	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	.	.	.	.	.	.	34	4	28	0	G|0.994;A|0.006	.
ANO8	57719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17443815	17443815	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANO8	NM_020959	exon5	c.C510T	p.R170R	.	.	85	29	98	0	.	93
APOB	338	hgsc.bcm.edu;bcgsc.ca	37	2	21229380	21229381	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	APOB,back,malignant_melanoma,+2	APOB	NM_000384	exon26	c.10360_10361insT	p.V3454fs	.	.	181	58	196	0	.	175
ART5	116969	broad.mit.edu;bcgsc.ca	37	11	3661417	3661417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ART5	NM_001079536	exon3	c.G242A	p.G81E	.	.	160	6	178	0	.	91
ATP6	0	broad.mit.edu	37	MT	9055	9055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	ENST00000361899	exon1	c.G529A	p.A177T	.	.	276	43	15	0	.	.
BTN1A1	696	bcgsc.ca	37	6	26509139	26509139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	BTN1A1	NM_001732	exon7	c.G1318A	p.D440N	.	.	118	6	94	0	.	92
C11orf63	79864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122774639	122774639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C11orf63	NM_024806	exon3	c.A351G	p.Q117Q	.	.	66	24	86	0	.	93
C1RL	51279	ucsc.edu;bcgsc.ca	37	12	7249174	7249174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C1RL	NM_016546	exon6	c.C1277T	p.T426M	.	.	206	73	262	2	.	91
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6693481	6693481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C3	NM_000064	exon25	c.G3172T	p.A1058S	.	.	32	9	39	0	.	95
C7orf43	55262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99754066	99754066	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C7orf43	NM_018275	exon8	c.A1183T	p.N395Y	.	.	313	86	225	1	.	90
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181767517	181767517	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	CACNA1E,NS,carcinoma,0	CACNA1E	NM_001205293	exon48	c.G6489A	p.P2163P	.	.	111	34	89	1	.	95
CACNA2D4	93589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1953666	1953666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CACNA2D4	NM_172364	exon25	c.G2372A	p.S791N	.	.	210	75	145	1	.	23
CANX	821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179150758	179150758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CANX	NM_001746	exon12	c.T1496A	p.I499N	.	.	103	34	149	1	.	90
CARS2	79587	bcgsc.ca	37	13	111298392	111298392	+	Silent	SNP	A	A	G	rs436462	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CARS2	NM_024537	exon12	c.T1239C	p.D413D	.	.	76	4	118	1	A|0.580;G|0.420	90
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43076659	43076659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CCDC30	NM_001080850	exon10	c.G1394A	p.S465N	.	.	35	9	62	0	.	90
CD1B	910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158301185	158301185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CD1B	NM_001764	exon1	c.C29A	p.A10D	.	.	292	62	271	0	.	92
CDNF	441549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14862095	14862095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CDNF	NM_001029954	exon4	c.A448G	p.I150V	.	.	155	39	93	1	.	90
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4935914	4935914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CDYL	NM_004824	exon3	c.G857C	p.R286T	.	.	251	167	170	1	.	90
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104066455	104066455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CENPE	NM_001813	exon32	c.A4609G	p.I1537V	.	.	49	14	52	0	.	277
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88479875	88479875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CEP290	NM_025114	exon34	c.A4378C	p.I1460L	.	.	48	16	47	0	.	96
CNDP2	55748	bcgsc.ca	37	18	72178161	72178161	+	Silent	SNP	T	T	C	rs2278159	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CNDP2	NM_018235	exon6	c.T570C	p.Y190Y	.	.	223	8	272	5	T|0.825;C|0.175	93
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1257366	1257366	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CPSF3L	.	.	.	.	.	.	151	81	272	0	.	90
CROCCP2	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	T	G	rs10796418		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	.	.	.	.	.	.	56	8	83	1	T|1.000;|0.000	.
CTNND2	1501	broad.mit.edu;ucsc.edu	37	5	11117631	11117631	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CTNND2	NM_001332	exon13	c.T2208A	p.C736X	.	.	228	72	236	1	.	293
CYP27A1	1593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219674376	219674376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CYP27A1	NM_000784	exon2	c.C332T	p.A111V	.	.	205	73	211	0	.	91
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159175737	159175737	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DARC	NM_001122951	exon1	c.A514T	p.T172S	.	.	104	23	92	0	.	659
DCHS1	8642	bcgsc.ca	37	11	6652618	6652618	+	Silent	SNP	C	C	T	rs2659871	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DCHS1	NM_003737	exon8	c.G3696A	p.P1232P	.	.	173	6	208	1	C|0.532;T|0.468	73
DCLRE1C	64421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14951131	14951131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DCLRE1C	NM_001033855	exon14	c.G1355T	p.C452F	.	.	107	31	99	0	.	228
DDX11	1663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31249813	31249813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DDX11	NM_030653	exon17	c.G1651A	p.E551K	.	.	183	67	164	0	.	229
DEGS1	8560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224377758	224377758	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DEGS1	NM_003676	exon2	c.A562T	p.I188F	.	.	89	22	76	1	.	90
DKK3	27122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11987381	11987381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DKK3	NM_015881	exon7	c.A805T	p.S269C	.	.	62	19	58	0	.	721
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6567458	6567458	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DNHD1	NM_144666	exon21	c.T5289C	p.Y1763Y	.	.	116	31	104	0	.	24
DUS2L	54920	bcgsc.ca	37	16	68088485	68088485	+	Silent	SNP	A	A	G	rs11555011	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DUS2L	NM_001271762	exon5	c.A273G	p.S91S	.	.	205	8	270	4	A|0.876;G|0.124	90
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EEF1B2	NM_021121	exon3	c.G135A	p.P45P	.	.	203	5	229	1	.	227
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184947229	184947229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EHHADH	NM_001966	exon4	c.A454G	p.I152V	.	.	106	40	120	0	.	93
ELAC2	60528	bcgsc.ca	37	17	12915009	12915009	+	Missense_Mutation	SNP	G	G	A	rs4792311	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ELAC2	NM_173717	exon7	c.C650T	p.S217L	.	.	129	6	184	2	G|0.755;A|0.245	90
EPS8L1	54869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55598913	55598913	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EPS8L1	NM_133180	exon20	c.A2103T	p.S701S	.	.	214	67	226	0	.	115
FAM120A	23196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96233651	96233652	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FAM120A	NM_014612	exon2	c.703_704insT	p.I235fs	.	.	161	31	184	0	.	90
FAM194B	220081	ucsc.edu	37	13	46170726	46170726	+	Missense_Mutation	SNP	A	A	G	rs28548352		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FAM194B	NM_182542	exon3	c.T415C	p.Y139H	.	.	55	8	113	0	.	68
FAM86HP	729375	broad.mit.edu;ucsc.edu	37	3	129823040	129823040	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	.	.	.	.	.	.	551	167	636	0	.	.
FLG	2312	bcgsc.ca	37	1	152278798	152278798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FLG	NM_002016	exon3	c.G8564A	p.G2855E	.	.	884	242	697	4	.	106
FLT3	2322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28626760	28626760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FLT3	NM_004119	exon5	c.A536G	p.Q179R	.	.	73	36	140	1	.	42117
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FRG1B	.	.	.	.	.	.	886	39	952	25	.	22
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32850640	32850640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FRY	NM_023037	exon57	c.G8326A	p.V2776M	.	.	82	35	161	0	.	142
GAD2	2572	hgsc.bcm.edu;bcgsc.ca	37	10	26505807	26505807	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GAD2	NM_000818	exon1	c.C69T	p.P23P	.	.	59	4	52	0	.	515
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	30819694	30819694	+	Nonsense_Mutation	SNP	C	C	A	rs145224145	alternate_allele	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GADL1	NM_207359	exon14	c.G1369T	p.E457X	.	.	230	78	298	1	C|0.999;T|0.000	90
GBE1	2632	bcgsc.ca	37	3	81720076	81720076	+	Silent	SNP	G	G	A	rs13320194	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GBE1	NM_000158	exon3	c.C342T	p.Y114Y	.	.	63	5	113	0	G|0.910;A|0.090	25
GOLGA6L6	727832	broad.mit.edu	37	15	20739825	20739825	+	Missense_Mutation	SNP	G	G	A	rs28590435		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_001145004	exon8	c.C1925T	p.T642M	.	.	51	4	40	1	.	.
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	121416717	121416717	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GOLGB1	NM_001256486	exon13	c.C2653T	p.Q885X	.	.	96	29	137	0	.	161
GPRIN2	9721	hgsc.bcm.edu	37	10	46999052	46999052	+	Missense_Mutation	SNP	A	A	G	rs147004572		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GPRIN2	NM_014696	exon3	c.A172G	p.R58G	.	.	18	5	4	0	A|1.000;G|0.000	90
HELQ	113510	ucsc.edu	37	4	84374767	84374767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	HELQ	NM_133636	exon2	c.C629T	p.S210L	.	.	40	4	55	0	.	155
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33308240	33308240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	HIPK3	NM_001048200	exon2	c.G280A	p.V94I	.	.	100	31	105	0	.	336
HSPG2	3339	bcgsc.ca	37	1	22158157	22158157	+	Silent	SNP	A	A	G	rs2229488	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	HSPG2	NM_005529	exon82	c.T11340C	p.N3780N	.	.	152	7	211	2	A|0.904;G|0.096	141
KCNMB3	27094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178984440	178984440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KCNMB3	NM_171828	exon1	c.G59A	p.G20E	.	.	69	29	87	0	.	90
KIAA2018	205717	hgsc.bcm.edu	37	3	113376101	113376101	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KIAA2018	NM_001009899	exon7	c.A4428G	p.Q1476Q	.	.	115	7	121	0	.	93
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117019926	117019927	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KPNA5	NM_002269	exon5	c.400_401del	p.134_134del	.	.	49	23	109	0	.	290
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39596873	39596873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KRT38	NM_006771	exon1	c.A301G	p.N101D	.	.	153	70	170	0	.	92
LAMP2	3920	bcgsc.ca	37	X	119590533	119590533	+	Silent	SNP	T	T	A	rs12097	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LAMP2	NM_013995	exon2	c.A156T	p.V52V	.	.	162	6	166	1	T|0.560;0|0.012	131
LHCGR	3973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48958372	48958372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LHCGR	NM_000233	exon2	c.T227G	p.I76R	.	.	29	11	31	0	.	589
LILRA3	11026	bcgsc.ca	37	19	54803504	54803504	+	Missense_Mutation	SNP	A	A	C	rs6509862	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LILRA3	NM_001172654	exon3	c.T320G	p.L107R	.	.	169	6	144	0	A|0.646;C|0.354	91
LOC644172	0	bcgsc.ca	37	17	43678742	43678742	+	RNA	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	.	.	.	.	.	.	95	29	88	1	.	.
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	110764538	110764538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LRRN3	NM_018334	exon2	c.1710delA	p.R570fs	.	.	71	20	61	0	.	154
MBOAT2	129642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9022691	9022691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MBOAT2	NM_138799	exon6	c.G456A	p.M152I	.	.	153	47	173	1	.	90
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	42837807	42837807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MEGF8	NM_001271938	exon2	c.G238T	p.E80X	.	.	115	35	120	0	.	23
METTL21C	196541	bcgsc.ca	37	13	103339365	103339365	+	Silent	SNP	A	A	G	rs660207	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	METTL21C	NM_001010977	exon3	c.T325C	p.L109L	.	.	66	5	96	0	A|0.484;G|0.516	90
MICA	100507436	ucsc.edu	37	6	31371430	31371430	+	Silent	SNP	T	T	C	rs2844519	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_001177519	exon1	c.T21C	p.F7F	.	.	24	11	15	2	T|0.031;G|0.672;C|0.169;A|0.129	.
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73013995	73013995	+	Missense_Mutation	SNP	G	G	A	rs146487355	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MLXIPL	NM_032954	exon8	c.C932T	p.P311L	.	.	85	27	73	0	G|0.998;A|0.002	91
MRPS35	60488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27908279	27908279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MRPS35	NM_021821	exon8	c.G868A	p.E290K	.	.	70	27	120	0	.	90
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1267292	1267292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_002458	exon31	c.C9182A	p.S3061Y	.	.	409	123	397	1	.	.
MYO7B	4648	bcgsc.ca	37	2	128335816	128335816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYO7B	NM_001080527	exon9	c.A958G	p.K320E	.	.	143	6	183	0	.	47
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	62839434	62839434	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.G885A	p.E295E	.	.	96	7	89	0	.	704
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	62839416	62839416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.G867A	p.E289E	.	.	80	14	68	0	.	704
MYT1	4661	ucsc.edu	37	20	62839407	62839407	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.A858G	p.E286E	.	.	76	12	63	2	.	704
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	15378653	15378653	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NBAS	NM_015909	exon45	c.C5882G	p.S1961X	.	.	82	35	120	0	.	94
NFS1	9054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34263098	34263098	+	Missense_Mutation	SNP	G	G	A	rs200454792		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NFS1	NM_021100	exon8	c.C817T	p.R273W	.	.	160	81	131	0	G|0.999;A|0.000	92
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173998531	173998531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NLGN1	NM_014932	exon7	c.G1910T	p.R637I	.	.	157	53	186	0	.	231
NOL7	51406	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13618350	13618350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NOL7	NM_016167	exon5	c.T479C	p.V160A	.	.	263	60	223	1	.	90
NXF3	56000	ucsc.edu;bcgsc.ca	37	X	102334288	102334288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NXF3	NM_022052	exon15	c.C1334T	p.T445M	.	.	443	276	544	3	.	205
OR2J3	442186	bcgsc.ca	37	6	29079992	29079992	+	Missense_Mutation	SNP	G	G	A	rs201612570	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OR2J3	NM_001005216	exon1	c.G325A	p.A109T	.	.	616	32	405	11	G|0.988;A|0.013	90
OR2M7	391196	ucsc.edu;bcgsc.ca	37	1	248487413	248487413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OR2M7	NM_001004691	exon1	c.C458A	p.S153Y	.	.	464	267	446	3	.	70
OR4Q3	441669	hgsc.bcm.edu	37	14	20215682	20215683	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OR4Q3	NM_172194	exon1	c.96_97insT	p.L32fs	.	.	74	12	85	0	.	71
OR5K3	403277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98109590	98109590	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OR5K3	NM_001005516	exon1	c.G81C	p.L27L	.	.	218	58	289	0	.	68
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4199475	4199475	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OTOP1	NM_177998	exon5	c.G1086T	p.G362G	.	.	176	54	179	0	.	92
PKD1L2	114780	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	81142804	81142804	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PKD1L2	.	.	.	.	.	.	150	41	144	0	.	92
POM121L1P	25812	broad.mit.edu;ucsc.edu	37	22	22985207	22985207	+	RNA	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	.	.	.	.	.	.	172	53	204	0	.	.
PTPLAD2	401494	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21008070	21008070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PTPLAD2	NM_001010915	exon6	c.C566T	p.S189F	.	.	81	19	135	1	.	91
PTPLAD2	401494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21008109	21008109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PTPLAD2	NM_001010915	exon6	c.C527T	p.S176L	.	.	84	21	133	0	.	91
RAD1	5810	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34914910	34914910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RAD1	NM_002853	exon2	c.A88G	p.I30V	.	.	255	66	304	1	.	227
RASSF8	11228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26217450	26217450	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RASSF8	NM_007211	exon4	c.C123A	p.T41T	.	.	104	32	163	0	.	90
RBL1	5933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35683995	35683995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RBL1	NM_183404	exon11	c.G1428A	p.M476I	.	.	79	39	71	0	.	419
RIPK4	54101	bcgsc.ca	37	21	43176832	43176832	+	Silent	SNP	A	A	G	rs2277791	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RIPK4	NM_020639	exon2	c.T327C	p.A109A	.	.	138	5	163	0	A|0.872;G|0.128	947
RTL1	388015	broad.mit.edu	37	14	101349764	101349764	+	Silent	SNP	C	C	T	rs34163305	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RTL1	NM_001134888	exon1	c.G1362A	p.P454P	.	.	150	5	145	1	C|0.882;T|0.118	46
SERPINA1	5265	bcgsc.ca	37	14	94849201	94849201	+	Missense_Mutation	SNP	C	C	T	rs709932	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SERPINA1	NM_001127701	exon4	c.G374A	p.R125H	.	.	118	5	121	1	T|0.106;G|0.156	226
SFTPA1	653509	broad.mit.edu	37	10	81371750	81371750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_001093770	exon3	c.C214A	p.P72T	.	.	497	41	350	0	.	.
SFTPA2	729238	bcgsc.ca	37	10	81319071	81319071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_001098668	exon3	c.C169A	p.P57T	.	.	1260	427	928	5	.	.
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	RNA	SNP	T	T	C	rs79284655	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	.	.	.	.	.	.	87	4	62	0	T|0.993;C|0.007	.
SMCR8	140775	bcgsc.ca	37	17	18221010	18221010	+	Missense_Mutation	SNP	A	A	G	rs12449313	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SMCR8	NM_144775	exon1	c.A1907G	p.N636S	.	.	209	8	206	3	A|0.770;G|0.229	91
SMTNL2	342527	ucsc.edu	37	17	4498611	4498611	+	Silent	SNP	G	G	A	rs12103697	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SMTNL2	NM_001114974	exon5	c.G978A	p.T326T	.	.	74	7	98	1	G|0.813;A|0.187	90
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43381915	43381915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNRK	NM_017719	exon5	c.C868G	p.L290V	.	.	217	70	200	0	.	815
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu	37	8	121824005	121824005	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNTB1	NM_021021	exon1	c.G79T	p.E27X	.	.	42	5	19	0	.	228
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu	37	2	1093900	1093900	+	Missense_Mutation	SNP	C	C	T	rs192264442	alternate_allele	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNTG2	NM_018968	exon3	c.C229T	p.R77C	.	.	88	4	116	0	C|0.998;A|0.002	136
SPANXN2	494119	bcgsc.ca	37	X	142795225	142795225	+	Silent	SNP	G	G	A	rs3859898	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SPANXN2	NM_001009615	exon2	c.C453T	p.D151D	.	.	142	5	143	1	G|0.397;A|0.603	91
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54876897	54876897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SPTBN1	NM_003128	exon26	c.T5348G	p.L1783R	.	.	258	80	279	0	.	140
SSPO	23145	bcgsc.ca	37	7	149524913	149524913	+	Missense_Mutation	SNP	G	G	A	rs12534509	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_198455	exon105	c.G14821A	p.E4941K	.	.	220	7	143	0	G|0.940;A|0.060	.
ST3GAL6	10402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98487331	98487331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ST3GAL6	NM_001271145	exon2	c.A206C	p.Y69S	.	.	121	41	188	0	.	91
SULT6B1	391365	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	37414600	37414600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SULT6B1	NM_001032377	exon2	c.G96T	p.W32C	.	.	21	5	39	0	.	91
SV2B	9899	broad.mit.edu	37	15	91769512	91769512	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SV2B	NM_014848	exon3	c.C19T	p.Q7X	.	.	180	6	165	0	.	97
TANC2	26115	broad.mit.edu;bcgsc.ca	37	17	61315195	61315196	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TANC2	NM_025185	exon6	c.568_569insA	p.E190fs	.	.	42	9	55	0	.	24
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	218609331	218609331	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TGFB2	NM_001135599	exon6	c.A858G	p.T286T	.	.	73	22	66	0	.	710
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	39886581	39886581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	THBS1	NM_003246	exon21	c.G3445A	p.G1149R	.	.	95	29	108	0	.	653
TLR9	54106	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52256679	52256679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TLR9	NM_017442	exon2	c.C1653A	p.D551E	.	.	130	49	84	1	.	587
TMEM215	401498	bcgsc.ca	37	9	32784838	32784838	+	Silent	SNP	T	T	C	rs1810807	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TMEM215	NM_212558	exon2	c.T657C	p.C219C	.	.	187	7	234	2	T|0.783;C|0.217	90
TMIGD1	388364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28656378	28656378	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TMIGD1	NM_206832	exon3	c.C252T	p.S84S	.	.	176	47	186	0	.	90
TMPRSS13	84000	ucsc.edu	37	11	117789359	117789359	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TMPRSS13	NM_001206790	exon2	c.C216T	p.G72G	.	.	44	17	31	1	.	91
TNFAIP8L2	79626	ucsc.edu;bcgsc.ca	37	1	151131353	151131353	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TNFAIP8L2	NM_024575	exon2	c.C180T	p.I60I	.	.	400	132	288	3	.	90
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32063403	32063403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TNXB	NM_019105	exon3	c.G2227A	p.E743K	.	.	580	96	300	1	.	90
TPCN2	219931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68854594	68854594	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TPCN2	NM_139075	exon24	c.G2100A	p.K700K	.	.	69	22	67	0	.	90
TRIM49	57093	ucsc.edu	37	11	89531780	89531780	+	Missense_Mutation	SNP	G	G	C	rs71240006		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TRIM49	NM_020358	exon8	c.C877G	p.H293D	.	.	82	9	88	3	G|0.500;C|0.500	84
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179499955	179499955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TTN	NM_001267550	exon228	c.A41961C	p.E13987D	.	.	119	39	130	0	.	636
TXNRD1	7296	bcgsc.ca	37	12	104709559	104709559	+	Silent	SNP	C	C	T	rs4964287	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TXNRD1	.	.	.	.	.	.	119	8	128	2	C|0.671;N|0.000	90
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	93835657	93835657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UBE2N	NM_003348	exon1	c.G4A	p.A2T	.	.	139	57	115	0	.	659
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5529136	5529136	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UBQLN3	NM_017481	exon2	c.G1653T	p.G551G	.	.	95	27	89	0	.	93
UNC119B	84747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121151187	121151187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UNC119B	NM_001080533	exon2	c.T355G	p.S119A	.	.	151	49	171	0	.	69
VAV3	10451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108116734	108116734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	VAV3	NM_006113	exon26	c.G2437T	p.D813Y	.	.	137	67	223	2	.	1339
WASL	8976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123334793	123334793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	WASL	NM_003941	exon8	c.G802A	p.V268I	.	.	100	24	87	0	.	90
WEE2	494551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141408580	141408580	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	WEE2	NM_001105558	exon1	c.22delA	p.K8fs	.	.	96	50	103	0	.	305
ZMYM3	9203	broad.mit.edu;bcgsc.ca	37	X	70464153	70464153	+	Silent	SNP	G	G	A	rs138149411		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ZMYM3	NM_005096	exon20	c.C3279T	p.G1093G	.	.	84	6	87	1	G|1.000;A|0.000	131
ZNF469	84627	hgsc.bcm.edu	37	16	88498779	88498779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_001127464	exon2	c.C4817T	p.T1606I	.	.	11	9	0	0	.	.
DPY19L2	283417	bcgsc.ca	37	12	63964599	63964600	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	.	.	.	p.I647V	.	.	.	.	.	.	.	
