Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTS7	11173	ucsc.edu	37	15	79067099	79067099	+	Silent	SNP	G	G	C	rs142017909	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ADAMTS7	NM_014272	exon12	c.C1743G	p.R581R	.	.	35	7	45	6	G|0.979;C|0.021	226
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	49508933	49508934	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ADNP	NM_015339	exon5	c.2317_2318del	p.773_773del	.	.	202	43	184	0	.	92
AKT3	10000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	243800994	243800994	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	AKT3	NM_001206729	exon6	c.480delG	p.G160fs	.	.	59	22	31	0	.	1423
ALG3	10195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183960448	183960448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	NM_005787	exon9	c.C1171T	p.L391F	.	.	214	30	210	1	.	.
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101490394	101490394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ANO4	NM_178826	exon18	c.T1714A	p.S572T	.	.	172	23	127	0	.	96
ATP10D	57205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47517533	47517533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ATP10D	NM_020453	exon3	c.T331C	p.W111R	.	.	142	18	180	0	.	93
BICC1	80114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	60573612	60573612	+	Missense_Mutation	SNP	G	G	C	rs111922761	byfrequency;alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	BICC1	NM_001080512	exon18	c.G2399C	p.R800P	.	.	248	45	199	0	G|0.992;A|0.008	72
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50658924	50658924	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	BMP15	NM_005448	exon2	c.T496A	p.S166T	.	.	379	56	315	0	.	132
C11orf73	51501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86048470	86048470	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	C11orf73	NM_016401	exon3	c.A318G	p.P106P	.	.	155	35	132	0	.	90
C1QA	712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22965369	22965369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	C1QA	NM_015991	exon3	c.C207A	p.D69E	.	.	63	10	62	0	.	90
CCNE1	898	bcgsc.ca	37	19	30308385	30308385	+	Silent	SNP	T	T	C	rs3218045	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	CCNE1	NM_001238	exon6	c.T399C	p.F133F	.	.	233	7	202	2	T|0.975;C|0.025	1270
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	48610139	48610139	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	COL7A1	NM_000094	exon87	c.A6865T	p.K2289X	.	.	152	19	139	0	.	160
CSTF2	1478	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100088436	100088436	+	Missense_Mutation	SNP	C	C	T	rs139392902		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	CSTF2	NM_001325	exon11	c.C1475T	p.A492V	.	.	585	105	454	3	C|1.000;T|0.000	131
DCBLD2	131566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98541530	98541530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DCBLD2	NM_080927	exon5	c.C679T	p.P227S	.	.	298	59	298	1	.	92
DMKN	93099	hgsc.bcm.edu	37	19	36002382	36002382	+	Silent	SNP	G	G	A	rs112672248	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DMKN	NM_001126058	exon5	c.C849T	p.G283G	.	.	34	7	65	0	G|0.973;A|0.027	155
DMKN	93099	ucsc.edu	37	19	36002405	36002405	+	Missense_Mutation	SNP	T	T	C	rs113540509	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DMKN	NM_001126058	exon5	c.A826G	p.S276G	.	.	37	21	61	0	T|0.965;C|0.035	155
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196740508	196740508	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DNAH7	NM_018897	exon38	c.C6177A	p.P2059P	.	.	201	44	193	0	.	102
DNASE1L1	1774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153633194	153633194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DNASE1L1	NM_006730	exon4	c.A286G	p.M96V	.	.	293	58	233	0	.	554
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DSPP	NM_014208	exon5	c.T2643C	p.D881D	.	.	334	3	299	1	.	90
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58001298	58001298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DTX3	NM_178502	exon5	c.C652T	p.R218W	.	.	407	63	249	0	.	1083
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45391660	45391660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DUOX2	NM_014080	exon26	c.G3436A	p.A1146T	.	.	92	16	81	0	.	95
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	.	.	.	.	.	.	61	6	84	1	G|0.994;C|0.006	.
FAM208A	23272	broad.mit.edu	37	3	56703746	56703746	+	Silent	SNP	A	A	C	rs13094666	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	NM_001112736	exon5	c.T717G	p.V239V	.	.	90	3	124	0	A|0.623;C|0.377	.
FBLN1	2192	broad.mit.edu	37	22	45958914	45958914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	FBLN1	NM_001996	exon15	c.G1820T	p.G607V	.	.	47	6	43	3	.	515
FBXL18	80028	ucsc.edu	37	7	5541657	5541657	+	Silent	SNP	G	G	A	rs4724704	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	FBXL18	NM_024963	exon3	c.C243T	p.S81S	.	.	74	7	83	1	G|0.287;A|0.713	651
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152277553	152277553	+	Missense_Mutation	SNP	C	C	T	rs147429418	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	FLG	NM_002016	exon3	c.G9809A	p.R3270H	.	.	574	71	292	1	C|1.000;T|0.000	106
FRAS1	80144	bcgsc.ca	37	4	78987157	78987157	+	Missense_Mutation	SNP	A	A	G	rs4859905	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	FRAS1	NM_001166133	exon2	c.A95G	p.D32G	.	.	126	5	137	0	A|0.473;G|0.527	68
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79238646	79238646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	FRAS1	NM_001166133	exon17	c.C1944A	p.D648E	.	.	93	16	84	0	.	68
GPRIN2	9721	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	46999762	46999762	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	GPRIN2	NM_014696	exon3	c.C882T	p.A294A	.	.	370	24	312	1	.	90
HGC6.3	0	broad.mit.edu	37	6	168377094	168377094	+	Missense_Mutation	SNP	G	G	T	rs9364375	alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	NM_001129895	exon1	c.C239A	p.P80H	.	.	103	7	72	1	G|0.500;A|0.500	.
HLA-DMB	3109	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32904957	32904957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	HLA-DMB	NM_002118	exon3	c.G614A	p.R205Q	.	.	248	67	167	1	.	90
HRH3	11255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60791450	60791450	+	Missense_Mutation	SNP	G	G	A	rs200015061		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	HRH3	NM_007232	exon3	c.C950T	p.P317L	.	.	25	9	32	0	G|0.999;A|0.001	90
IBSP	3381	bcgsc.ca	37	4	88732918	88732918	+	Missense_Mutation	SNP	A	A	T	rs1054629	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	IBSP	NM_004967	exon7	c.A810T	p.E270D	.	.	124	6	124	1	A|0.771;T|0.229	90
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151166486	151166486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	IGSF10	NM_178822	exon4	c.G1283T	p.W428L	.	.	81	13	62	0	.	102
ITGA4	3676	broad.mit.edu	37	2	182322555	182322555	+	Silent	SNP	G	G	A	rs9653300	alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ITGA4	NM_000885	exon1	c.G174A	p.L58L	.	.	161	7	150	1	.	230
KBTBD8	84541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	67054129	67054129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	KBTBD8	NM_032505	exon3	c.A738T	p.E246D	.	.	53	12	65	0	.	587
KIAA0895L	653319	broad.mit.edu	37	16	67214475	67214475	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	KIAA0895L	NM_001040715	exon2	c.A39C	p.A13A	.	.	39	7	39	4	.	68
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200959773	200959773	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	KIF21B	NM_017596	exon19	c.G2766T	p.R922R	.	.	183	20	95	0	.	96
KIR2DL3	3804	broad.mit.edu	37	19	55253690	55253690	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	KIR2DL3	NM_015868	exon3	c.C335G	p.S112X	.	.	65	20	52	0	.	92
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60887087	60887087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	LAMA5	NM_005560	exon70	c.C9524T	p.S3175F	.	.	57	16	61	0	.	93
LAMC3	10319	broad.mit.edu	37	9	133966934	133966934	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	LAMC3	NM_006059	exon28	c.C4488T	p.D1496D	.	.	74	5	95	2	.	93
LIPC	3990	bcgsc.ca	37	15	58838010	58838010	+	Missense_Mutation	SNP	A	A	G	rs6083	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	LIPC	NM_000236	exon5	c.A644G	p.N215S	.	.	110	7	118	0	A|0.457;G|0.543	91
LYST	1130	hgsc.bcm.edu	37	1	235940366	235940366	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	LYST	NM_000081	exon17	c.C5457T	p.A1819A	.	.	68	4	52	0	.	143
MED27	9442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134738510	134738510	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	MED27	NM_004269	exon7	c.C741T	p.T247T	.	.	180	32	159	0	.	69
MFSD7	84179	broad.mit.edu	37	4	676100	676100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	MFSD7	NM_032219	exon10	c.A1327C	p.T443P	.	.	84	27	59	15	.	90
MPP1	4354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154010040	154010040	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	MPP1	NM_002436	exon10	c.G984A	p.G328G	.	.	361	64	254	0	.	132
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11825	11825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	ENST00000361381	exon1	c.G1066A	p.A356T	.	.	33	31	11	0	.	.
ND5	0	broad.mit.edu	37	MT	14063	14063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	ENST00000361567	exon1	c.T1727C	p.I576T	.	.	36	5	15	0	.	.
NEFH	4744	ucsc.edu	37	22	29885564	29885564	+	Silent	SNP	A	A	G	rs202065964		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NEFH	NM_021076	exon4	c.A1935G	p.E645E	.	.	211	67	129	0	.	90
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	316	78	227	1	A|0.500;T|0.500	90
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55450802	55450802	+	Missense_Mutation	SNP	C	C	T	rs146205567	alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NLRP7	NM_001127255	exon4	c.G1385A	p.G462D	.	.	220	29	162	0	C|1.000;A|0.000	291
NOTCH2NL	388677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145273364	145273364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NOTCH2NL	NM_203458	exon3	c.C218G	p.S73C	.	.	3638	161	2643	0	.	211
NOTUM	147111	bcgsc.ca	37	17	79916266	79916266	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NOTUM	NM_178493	exon5	c.C537T	p.F179F	.	.	94	7	62	0	.	22
OAT	4942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126089485	126089485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	OAT	NM_000274	exon9	c.G1083A	p.M361I	.	.	144	31	118	0	.	68
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15917988	15917988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	OR10H1	NM_013940	exon1	c.G860A	p.S287N	.	.	310	54	304	0	.	68
PCDHGC5	56097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140869878	140869878	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PCDHGC5	NM_018929	exon1	c.C1071T	p.N357N	.	.	151	37	138	0	.	25
PGS1	9489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76395500	76395500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PGS1	NM_024419	exon5	c.583delT	p.F195fs	.	.	180	46	125	0	.	90
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	288111	288111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PPAP2C	NM_177543	exon2	c.G176A	p.C59Y	.	.	272	38	245	0	.	90
PRIM2	5558	broad.mit.edu;mdanderson.org	37	6	57393119	57393119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PRIM2	.	.	.	.	.	.	30	4	25	0	.	227
PRKACG	5568	broad.mit.edu	37	9	71628907	71628907	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PRKACG	NM_002732	exon1	c.C102T	p.P34P	.	.	80	3	52	0	.	1061
RBL2	5934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	53524210	53524210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RBL2	NM_005611	exon22	c.T3418C	p.X1140R	.	.	106	23	115	0	.	841
RBMXL3	139804	broad.mit.edu	37	X	114424941	114424941	+	Missense_Mutation	SNP	G	G	A	rs62601530		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	NM_001145346	exon1	c.G937A	p.A313T	.	.	290	5	314	1	G|0.928;A|0.072	.
RIBC1	158787	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53457369	53457369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RIBC1	NM_001031745	exon7	c.G689A	p.R230H	.	.	342	60	312	1	.	130
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104897822	104897822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RIMS2	NM_001100117	exon4	c.G995T	p.R332L	.	.	94	12	85	0	.	279
RNF11	26994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51702468	51702468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RNF11	NM_014372	exon1	c.T40A	p.S14T	.	.	216	44	227	0	.	226
RPL7A	6130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136216457	136216457	+	Missense_Mutation	SNP	G	G	A	rs11549070		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RPL7A	NM_000972	exon3	c.G176A	p.R59H	.	.	170	43	112	0	.	90
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29889651	29889651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SEZ6L2	NM_001243332	exon10	c.G1669A	p.V557M	.	.	125	34	120	0	.	92
SLC6A10P	386757	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	32894016	32894016	+	RNA	SNP	G	G	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	.	.	.	.	.	.	585	141	576	0	.	.
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1409893	1409893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SLC6A3	NM_001044	exon10	c.C1341T	p.L447L	.	.	198	35	169	0	.	157
SMAD7	4092	broad.mit.edu;mdanderson.org	37	18	46448256	46448256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SMAD7	NM_005904	exon4	c.G767A	p.G256E	.	.	54	10	43	0	.	414
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242004719	242004719	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SNED1	NM_001080437	exon21	c.C2718T	p.L906L	.	.	112	13	81	0	.	72
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	118635840	118635840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SPAG17	NM_206996	exon8	c.T1112A	p.L371H	.	.	173	13	117	0	.	158
STAT5B	6777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40384099	40384100	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	STAT5B	NM_012448	exon2	c.47_48insC	p.H16fs	.	.	242	48	199	0	.	850
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382426	24382426	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	NM_001136234	exon1	c.G1549C	p.A517P	.	.	241	11	199	0	.	.
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64900425	64900425	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SYVN1	NM_172230	exon4	c.T346G	p.F116V	.	.	176	28	154	0	.	91
TACC2	10579	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123844727	123844727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TACC2	NM_206862	exon4	c.G2712T	p.Q904H	.	.	190	35	137	1	.	296
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27206595	27206595	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TEK	NM_000459	exon15	c.G2380C	p.V794L	.	.	109	12	101	0	.	1584
TMEM218	219854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124971201	124971201	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TMEM218	NM_001258242	exon5	c.216-2A>T	.	.	.	33	9	38	0	.	68
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29920979	29920979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TMTC1	NM_001193451	exon2	c.C332T	p.P111L	.	.	80	11	77	0	.	90
TPRX1	284355	hgsc.bcm.edu	37	19	48305646	48305646	+	Missense_Mutation	SNP	G	G	A	rs112842028		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TPRX1	NM_198479	exon2	c.C622T	p.P208S	.	.	14	7	22	0	G|0.500;A|0.500	90
TRIOBP	11078	broad.mit.edu	37	22	38119859	38119859	+	Silent	SNP	C	C	T	rs66505048	bycluster;byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TRIOBP	NM_001039141	exon7	c.C1296T	p.C432C	.	.	275	7	298	1	C|0.500;T|0.500	136
TRIP12	9320	hgsc.bcm.edu	37	2	230632438	230632438	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TRIP12	NM_004238	exon41	c.A5811T	p.T1937T	.	.	88	4	71	0	.	572
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2134406	2134406	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TSC2	NM_000548	exon34	c.C4183T	p.Q1395X	.	.	60	14	84	0	.	1908
TTC24	164118	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	156551507	156551507	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TTC24	NM_001105669	exon2	c.C351T	p.G117G	.	.	228	30	136	0	.	46
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134731941	134731941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	NM_001200049	exon16	c.G1942T	p.D648Y	.	.	217	50	225	0	.	.
TTN	7273	bcgsc.ca	37	2	179474466	179474466	+	Silent	SNP	C	C	T	rs2288566	byfrequency	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TTN	NM_001267550	exon272	c.G51684A	p.A17228A	.	.	284	8	243	1	C|0.962;T|0.038	636
TTN	7273	ucsc.edu;bcgsc.ca	37	2	179576711	179576711	+	Missense_Mutation	SNP	G	G	C	rs182355009	by1000genomes;alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TTN	NM_001267550	exon96	c.C27846G	p.S9282R	.	.	229	31	226	3	G|0.999;A|0.001	636
U2AF2	11338	broad.mit.edu	37	19	56171541	56171541	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	U2AF2	NM_007279	exon3	c.186-2A>C	.	.	.	137	14	88	4	.	91
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79983032	79983032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	VPS13A	NM_001018038	exon62	c.A8533C	p.I2845L	.	.	44	8	44	0	.	161
ZBTB7A	51341	bcgsc.ca	37	19	4055085	4055085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZBTB7A	NM_015898	exon2	c.G146A	p.R49H	.	.	9	3	28	0	.	228
ZNF446	55663	hgsc.bcm.edu	37	19	58991841	58991841	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF446	NM_017908	exon7	c.C1101T	p.T367T	.	.	92	4	123	0	.	91
ZNF454	285676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178391688	178391688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF454	NM_001178089	exon5	c.A283G	p.T95A	.	.	124	37	147	0	.	93
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37045633	37045633	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF529	NM_001145649	exon5	c.T174C	p.S58S	.	.	148	35	146	0	.	67
ZNF732	654254	hgsc.bcm.edu	37	4	289878	289878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF732	NM_001137608	exon1	c.G67T	p.A23S	.	.	178	8	175	0	.	22
ZNF732	654254	hgsc.bcm.edu	37	4	289881	289881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF732	NM_001137608	exon1	c.C64A	p.P22T	.	.	170	8	168	0	.	22
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40540905	40540905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF780B	NM_001005851	exon5	c.G1861A	p.A621T	.	.	144	26	134	0	.	47
RP11-598F7.1	0	broad.mit.edu	37	12	68276	68277	+	RNA	DNP	TT	TT	CC	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	TT	TT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	.	.	.	.	.	.	.	.	.	.	.	
