Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AARS2	57505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44273478	44273478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AARS2	NM_020745	exon10	c.C1346T	p.P449L	.	.	339	90	211	0	.	91
ABCC6P1	653190	broad.mit.edu	37	16	18584198	18584198	+	RNA	SNP	G	G	T	rs72657702	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NR_003569	exon2	c.65-1G>T	.	.	.	135	32	103	0	.	.
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	44073229	44073229	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACCSL	NM_001031854	exon5	c.T732A	p.S244S	.	.	234	10	152	0	.	95
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20494379	20494379	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACSM2A	NM_001010845	exon14	c.1510-1G>A	.	.	.	199	46	137	0	.	91
ACTG1	71	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79479128	79479128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACTG1	NM_001614	exon3	c.G164T	p.G55V	.	.	68	16	43	0	.	91
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	236850058	236850058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACTN2	NM_001103	exon1	c.G85A	p.D29N	.	.	157	11	92	0	.	95
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	148657133	148657133	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ACVR2A	NM_001616	exon3	c.C370T	p.Q124X	.	.	55	17	19	0	.	831
ADCY9	115	broad.mit.edu	37	16	4165358	4165358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ADCY9	NM_001116	exon2	c.G86A	p.R29H	.	.	77	12	72	2	.	139
AKR1E2	83592	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	4875659	4875659	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AKR1E2	NM_001271021	exon3	c.324+1G>T	.	.	.	274	57	232	1	.	68
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283832	74283834	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ALB	NM_000477	exon12	c.1456_1458del	p.486_486del	.	.	96	20	55	0	.	96
ANXA2P1	303	ucsc.edu	37	4	154229061	154229061	+	RNA	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	47	18	27	0	.	.
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83357541	83357541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AP3B2	NM_004644	exon4	c.G307C	p.E103Q	.	.	170	31	152	0	.	94
APOC3	345	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116703552	116703552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	APOC3	NM_000040	exon4	c.C252G	p.F84L	.	.	179	59	159	1	.	68
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156937793	156937793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF11	NM_198236	exon11	c.T949G	p.S317A	.	.	173	37	152	0	.	233
ARHGEF18	23370	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7504866	7504866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF18	NM_001130955	exon1	c.G40T	p.A14S	.	.	97	33	127	1	.	228
ARHGEF2	9181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155932460	155932460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ARHGEF2	NM_001162383	exon9	c.G1025A	p.C342Y	.	.	287	22	181	0	.	228
ATG4B	23192	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242592932	242592932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_178326	exon4	c.A190G	p.T64A	.	.	204	42	207	2	.	.
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193029676	193029676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP13A5	NM_198505	exon20	c.T2374C	p.C792R	.	.	176	29	92	0	.	144
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	26586735	26586735	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP8A2	NM_016529	exon36	c.C3444A	p.G1148G	.	.	61	35	38	0	.	138
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50273555	50273555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ATP9A	NM_006045	exon14	c.C1428A	p.N476K	.	.	209	22	152	0	.	94
AUP1	550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74754135	74754135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	AUP1	NM_181575	exon11	c.A1129G	p.K377E	.	.	105	5	54	0	.	90
B3GNT2	10678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62449528	62449528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	B3GNT2	NM_006577	exon2	c.A173T	p.Y58F	.	.	115	12	101	0	.	23
BAGE3	85318	bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_182481	exon3	c.G118A	p.D40N	.	.	375	14	229	4	C|0.750;T|0.250	.
BBS7	55212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122747089	122747089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	BBS7	NM_176824	exon19	c.A2074G	p.K692E	.	.	37	10	18	0	.	91
BTBD19	149478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45278683	45278683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001136537	exon5	c.G430A	p.G144S	.	.	187	47	154	1	.	.
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	159797621	159797621	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	C1QTNF2	NM_031908	exon1	c.G24T	p.P8P	.	.	39	14	18	0	.	91
C20orf166-AS1	253868	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	61143534	61143534	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	55	27	36	0	.	.
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6693493	6693493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	C3	NM_000064	exon25	c.A3160G	p.T1054A	.	.	40	21	29	0	.	95
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	122526154	122526154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CADPS2	NM_001167940	exon1	c.G238C	p.E80Q	.	.	143	29	94	0	.	94
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34101204	34101204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CAPRIN1	NM_203364	exon7	c.G718A	p.V240I	.	.	72	19	82	0	.	91
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	30863308	30863308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CAPRIN2	NM_001002259	exon18	c.C2912T	p.T971I	.	.	184	16	128	0	.	92
CCDC91	55297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	28459739	28459739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CCDC91	NM_018318	exon4	c.A332G	p.K111R	.	.	77	28	52	0	.	90
CDC14C	168448	bcgsc.ca	37	7	48964898	48964898	+	RNA	DEL	C	C	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	401	183	240	2	.	.
CEP76	79959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12699183	12699183	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CEP76	NM_024899	exon4	c.G315A	p.R105R	.	.	104	24	65	0	.	90
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50863255	50863255	+	Silent	SNP	C	C	T	rs201580702	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHAT	NM_020549	exon12	c.C1749T	p.A583A	.	.	192	61	120	0	C|0.999;G|0.001	514
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	146757007	146757008	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHD1L	NM_004284	exon17	c.1861_1862insT	p.I621fs	.	.	351	40	149	0	.	231
CHL1	10752	bcgsc.ca;mdanderson.org	37	3	433400	433400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHL1	NM_001253388	exon21	c.A2834C	p.K945T	.	.	66	21	41	1	.	583
CHM	1121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85302520	85302520	+	Missense_Mutation	SNP	G	G	A	rs201252021		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHM	NM_001145414	exon1	c.C17T	p.P6L	.	.	188	117	154	0	.	131
CHST12	55501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	2472325	2472325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CHST12	NM_018641	exon2	c.C51A	p.F17L	.	.	87	46	40	0	.	226
COG8	84342	broad.mit.edu	37	16	69368463	69368463	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	COG8	NM_032382	exon3	c.G1374A	p.A458A	.	.	154	5	131	0	.	91
COL14A1	7373	broad.mit.edu	37	8	121353595	121353595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	COL14A1	NM_021110	exon43	c.A4817G	p.E1606G	.	.	127	3	92	0	.	543
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189927932	189927932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	COL5A2	NM_000393	exon27	c.G1835A	p.G612E	.	.	41	14	19	0	.	92
CPEB2	132864	broad.mit.edu	37	4	15010032	15010032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CPEB2	NM_001177382	exon3	c.G2015A	p.G672E	.	.	93	3	50	0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	.	.	283	83	182	0	.	24361
CYP39A1	51302	broad.mit.edu	37	6	46554883	46554883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	CYP39A1	NM_016593	exon10	c.A1181G	p.N394S	.	.	185	6	132	0	.	91
CYP4F2	8529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16000329	16000329	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	CYP4F2,NS,carcinoma,-2	CYP4F2	NM_001082	exon7	c.G822A	p.R274R	.	.	270	110	185	2	.	92
DBN1	1627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176885388	176885388	+	Missense_Mutation	SNP	C	C	A	rs142184479	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DBN1	NM_080881	exon13	c.G1453T	p.G485W	.	.	212	85	158	1	C|1.000;T|0.000	587
DCHS1	8642	broad.mit.edu;mdanderson.org	37	11	6651029	6651029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DCHS1	NM_003737	exon11	c.G4909A	p.V1637I	.	.	39	7	48	1	.	73
DCLK2	166614	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151168791	151168791	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DCLK2	NM_001040261	exon14	c.C1866A	p.I622I	.	.	107	40	68	1	.	300
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42763420	42763420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DGKH	NM_001204504	exon16	c.G1887T	p.R629S	.	.	116	31	88	0	.	652
DHX30	22907	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47888778	47888778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DHX30	NM_138615	exon12	c.G1945A	p.A649T	.	.	298	20	248	1	.	228
DISC1	27185	ucsc.edu	37	1	232144887	232144887	+	Missense_Mutation	SNP	A	A	G	rs821617	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DISC1	NM_001164538	exon11	c.A2399G	p.K800R	.	.	44	4	18	0	A|0.764;G|0.236	91
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38138132	38138132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DLEC1	NM_007337	exon15	c.A2244T	p.K748N	.	.	133	48	90	0	.	161
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6566625	6566625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DNHD1	NM_144666	exon21	c.A4456G	p.K1486E	.	.	181	47	156	0	.	24
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128796464	128796464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK1	NM_001380	exon8	c.G718A	p.A240T	.	.	214	60	230	1	.	698
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129216713	129216713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK1	NM_001380	exon45	c.G4537T	p.D1513Y	.	.	96	33	77	0	.	698
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu	37	7	111517084	111517084	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOCK4	NM_014705	exon18	c.1744+2T>C	.	.	.	87	6	41	0	.	26
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83866961	83866961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DOPEY1	NM_015018	exon35	c.T6665C	p.L2222P	.	.	106	7	78	0	.	155
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29115251	29115251	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DSG2	NM_001943	exon10	c.T1299C	p.D433D	.	.	81	19	88	0	.	563
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28971168	28971168	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DSG4	NM_001134453	exon7	c.A812C	p.K271T	.	.	93	30	50	0	.	177
DYNC1I2	1781	bcgsc.ca	37	2	172585298	172585298	+	Silent	SNP	T	T	C	rs78255103	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	DYNC1I2	NM_001378	exon14	c.T1329C	p.D443D	.	.	439	31	295	8	T|0.333;C|0.667	91
EML3	256364	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62376466	62376466	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	EML3	NM_153265	exon7	c.A897G	p.R299R	.	.	140	39	100	2	.	91
EPC1	80314	bcgsc.ca	37	10	32635834	32635834	+	Silent	SNP	G	G	A	rs11597888	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	EPC1	NM_001272004	exon1	c.C10T	p.L4L	.	.	62	4	54	0	G|0.859;A|0.141	93
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220174520	220174520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	EPRS	NM_004446	exon17	c.G2141T	p.G714V	.	.	249	65	123	0	.	92
ESPNL	339768	mdanderson.org	37	2	239040129	239040129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ESPNL	NM_194312	exon9	c.G2774A	p.R925H	.	.	15	3	9	0	.	69
F8	2157	broad.mit.edu	37	X	154197619	154197619	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	F8	NM_000132	exon7	c.T996A	p.S332S	.	.	90	7	72	0	.	182
FAM104B	90736	broad.mit.edu	37	X	55172659	55172659	+	Missense_Mutation	SNP	A	A	G	rs5018687		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FAM104B	NM_001166699	exon3	c.T209C	p.I70T	.	.	64	4	36	0	A|0.997;G|0.003	130
FAM218A	152756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	165878425	165878425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_153027	exon1	c.T251C	p.F84S	.	.	366	112	339	3	.	.
FAM58A	92002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152858107	152858107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FAM58A	.	.	.	.	.	.	79	52	78	2	.	130
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	127674670	127674670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FBN2	NM_001999	exon26	c.T3427C	p.F1143L	.	.	326	21	219	0	.	146
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	157494326	157494326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FCRL5	NM_031281	exon10	c.T1982A	p.L661H	.	.	271	16	140	0	.	156
FGGY	55277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	59844499	59844499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FGGY	NM_001113411	exon5	c.G544A	p.V182I	.	.	80	5	71	0	.	69
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu	37	14	86089799	86089799	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FLRT2	NM_013231	exon2	c.C1941G	p.Y647X	.	.	94	6	92	0	.	94
FOXRED2	80020	bcgsc.ca	37	22	36897427	36897427	+	Silent	SNP	T	T	C	rs5756223	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FOXRED2	NM_001102371	exon5	c.A1077G	p.A359A	.	.	95	6	69	0	T|0.944;C|0.056	92
FRG1B	284802	bcgsc.ca	37	20	29632680	29632680	+	RNA	SNP	G	G	A	rs4892355		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	FRG1B	.	.	.	.	.	.	384	24	341	9	G|0.500;A|0.500	22
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51758078	51758078	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GALNT6	NM_007210	exon6	c.G876A	p.V292V	.	.	219	65	174	0	.	92
GANC	2595	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42646624	42646624	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GANC	.	.	.	.	.	.	288	117	185	0	.	92
GAREM	64762	bcgsc.ca	37	18	29972964	29972964	+	Silent	SNP	A	A	G	rs3786308	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_022751	exon2	c.T156C	p.Y52Y	.	.	131	6	133	0	A|0.855;G|0.145	.
GHITM	27069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85909939	85909939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GHITM	NM_014394	exon7	c.T721C	p.F241L	.	.	167	20	121	1	.	90
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	121747481	121747481	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GLI2	NM_005270	exon13	c.T3991A	p.S1331T	.	.	181	10	162	0	.	954
GLTSCR1	29998	broad.mit.edu;mdanderson.org	37	19	48182830	48182830	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GLTSCR1	NM_015711	exon6	c.C403T	p.Q135X	.	.	10	4	8	0	.	48
GPR133	283383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	131622709	131622709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR133	NM_198827	exon24	c.A2464G	p.K822E	.	.	94	16	87	1	.	191
GPR135	64582	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59930690	59930690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR135	NM_022571	exon1	c.G1255T	p.G419C	.	.	88	30	87	1	.	90
GPR19	2842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12815347	12815347	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GPR19	NM_006143	exon4	c.A36G	p.P12P	.	.	66	9	60	0	.	91
GRAMD4	23151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	47073042	47073042	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GRAMD4	NM_015124	exon18	c.1633-2A>T	.	.	.	93	6	71	0	.	23
GRM6	2916	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178408783	178408783	+	Missense_Mutation	SNP	C	C	T	rs61731185	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GRM6	NM_000843	exon10	c.G2509A	p.V837I	.	.	275	102	183	0	C|0.990;T|0.010	588
GSK3B	2932	broad.mit.edu	37	3	119562152	119562152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	GSK3B	NM_002093	exon11	c.C1184T	p.A395V	.	.	105	3	73	0	.	978
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18688299	18688299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HDAC9	NM_178425	exon10	c.T1460A	p.M487K	.	.	144	42	78	0	.	227
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	191159323	191159323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HIBCH	NM_014362	exon4	c.A253G	p.I85V	.	.	81	8	57	0	.	90
HIST1H1B	3009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27834746	27834746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HIST1H1B	NM_005322	exon1	c.A562G	p.K188E	.	.	138	30	90	0	.	585
HK3	3101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176318451	176318451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HK3	NM_002115	exon3	c.C197T	p.A66V	.	.	143	11	110	0	.	294
HSPA12B	116835	broad.mit.edu	37	20	3726646	3726646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HSPA12B	NM_052970	exon7	c.G643T	p.A215S	.	.	193	12	153	1	.	226
HYDIN	54768	broad.mit.edu	37	16	70863697	70863697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	HYDIN	NM_001270974	exon81	c.A13936G	p.T4646A	.	.	117	25	79	0	.	92
ICOSLG	23308	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45656879	45656879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ICOSLG	NM_015259	exon3	c.C277T	p.R93W	.	.	170	55	166	0	.	90
IGF2BP3	10643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23353255	23353255	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	IGF2BP3	NM_006547	exon13	c.T1413C	p.Y471Y	.	.	81	38	35	0	.	92
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102836404	102836404	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	IL1RL2	NM_003854	exon8	c.A918G	p.K306K	.	.	156	65	93	0	.	92
IL20	50604	broad.mit.edu	37	1	207039710	207039710	+	Splice_Site	SNP	G	G	T	rs138566326	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	IL20	NM_018724	exon2	c.225+1G>T	.	.	.	269	8	157	1	A|0.000;G|0.999;T|0.001	90
ING1	3621	broad.mit.edu;bcgsc.ca	37	13	111371951	111371951	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ING1	NM_005537	exon2	c.G941C	p.G314A	.	.	281	9	286	0	.	515
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	124592297	124592297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ITGB5	NM_002213	exon2	c.A152G	p.K51R	.	.	172	9	147	0	.	227
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52824922	52824922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ITIH1	NM_002215	exon20	c.A2479G	p.T827A	.	.	152	45	152	0	.	93
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41766715	41766715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KBTBD7	NM_032138	exon1	c.A1679G	p.Q560R	.	.	187	52	155	0	.	91
KCNA7	3743	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49573780	49573780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KCNA7	NM_031886	exon2	c.C911T	p.T304M	.	.	133	10	115	1	.	90
KCNG4	93107	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84270993	84270993	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KCNG4	NM_172347	exon2	c.G99T	p.T33T	.	.	136	43	119	1	.	93
KCP	375616	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	128531548	128531548	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KCP	.	.	.	.	.	.	41	13	42	0	.	68
KIAA1407	57577	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113753775	113753775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIAA1407	NM_020817	exon6	c.A815C	p.K272T	.	.	109	38	79	1	.	92
KIAA1644	85352	broad.mit.edu;mdanderson.org	37	22	44681359	44681359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIAA1644	NM_001099294	exon4	c.G548T	p.R183L	.	.	126	9	131	0	.	23
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72342641	72342641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KIF19	NM_153209	exon8	c.G902T	p.S301I	.	.	303	166	168	0	.	90
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126062722	126062722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KLF15	NM_014079	exon3	c.G1099A	p.E367K	.	.	74	32	56	0	.	91
KPNA7	402569	broad.mit.edu	37	7	98792868	98792868	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KPNA7	NM_001145715	exon4	c.T378G	p.L126L	.	.	172	6	113	1	.	158
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53189359	53189359	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	KRT3	NM_057088	exon1	c.C468T	p.G156G	.	.	174	65	118	0	.	90
KRTAP6-3	337968	broad.mit.edu;bcgsc.ca	37	21	31964988	31964988	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_181605	exon1	c.G224C	p.G75A	.	.	173	13	131	1	.	.
KRTAP6-3	337968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	31964987	31964987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_181605	exon1	c.G223C	p.G75R	.	.	175	13	132	1	.	.
LENG8	114823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54967843	54967843	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LENG8	NM_052925	exon11	c.C1474A	p.R492R	.	.	93	29	60	0	.	91
LOC392232	0	bcgsc.ca	37	8	73150353	73150353	+	RNA	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	111	5	72	0	.	.
LOC642236	0	bcgsc.ca	37	9	68433548	68433548	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	306	16	252	9	.	.
LOC643733	0	broad.mit.edu	37	11	104774183	104774183	+	RNA	SNP	A	A	G	rs15684	byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	46	3	45	0	A|0.290;G|0.710	.
LOC727924	0	bcgsc.ca	37	15	22297860	22297860	+	RNA	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	921	114	674	4	.	.
LRCH3	84859	broad.mit.edu;bcgsc.ca	37	3	197592322	197592322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LRCH3	NM_032773	exon16	c.G1745T	p.S582I	.	.	218	9	142	1	.	91
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196387008	196387008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LRRC33	NM_198565	exon3	c.C494T	p.A165V	.	.	93	50	70	0	.	92
LRRC72	100506049	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	16598540	16598540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001195280	exon5	c.A343G	p.I115V	.	.	300	69	158	0	.	.
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	33246001	33246001	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	LTBP1	NM_206943	exon3	c.T591C	p.N197N	.	.	133	8	85	0	.	230
MAML2	84441	hgsc.bcm.edu	37	11	95825362	95825362	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MAML2	NM_032427	exon2	c.G1833A	p.Q611Q	.	.	124	8	86	0	.	850
MAN1C1	57134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	25944335	25944335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MAN1C1	NM_020379	exon1	c.G47A	p.G16E	.	.	53	20	69	0	.	91
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	10403536	10403536	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MARCH6	NM_005885	exon15	c.T1215A	p.T405T	.	.	176	12	108	0	.	501
ME1	4199	broad.mit.edu	37	6	83921672	83921672	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ME1	NM_002395	exon14	c.C1690T	p.Q564X	.	.	124	4	75	0	.	92
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141764227	141764227	+	Silent	SNP	T	T	C	rs3087317		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MGAM	NM_004668	exon37	c.T4389C	p.C1463C	.	.	158	11	102	0	.	70
MMGT1	93380	bcgsc.ca	37	X	135056133	135056133	+	Splice_Site	SNP	C	C	T	rs3747460	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MMGT1	.	.	.	.	.	.	169	7	123	0	C|0.966;T|0.034	130
MUC2	4583	bcgsc.ca	37	11	1093364	1093364	+	Missense_Mutation	SNP	C	C	G	rs113138128		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MUC2	NM_002457	exon30	c.C5183G	p.T1728S	.	.	177	14	161	2	C|0.500;G|0.500	90
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4446343	4446343	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	MYBBP1A	NM_014520	exon20	c.C2757T	p.T919T	.	.	85	7	54	0	.	92
NBPF10	100132406	broad.mit.edu	37	1	145301802	145301802	+	Silent	SNP	C	C	G	rs6690575	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001039703	exon7	c.C1071G	p.L357L	.	.	44	6	21	0	C|0.785;G|0.215	.
NBPF10	100132406	broad.mit.edu	37	1	145303971	145303971	+	Silent	SNP	A	A	G	rs71239802	bycluster;byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001039703	exon9	c.A1368G	p.S456S	.	.	51	4	27	0	A|0.375;G|0.625	.
NCOA3	8202	bcgsc.ca	37	20	46255749	46255749	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NCOA3	NM_181659	exon6	c.361delT	p.L121fs	.	.	247	85	155	1	.	229
NCOA6	23054	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33334661	33334661	+	Missense_Mutation	SNP	T	T	G	rs17092079	byfrequency;alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NCOA6	NM_014071	exon10	c.A2864C	p.N955T	.	.	58	6	59	0	T|0.927;C|0.073	292
NEFH	4744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29885446	29885446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NEFH	NM_021076	exon4	c.C1817A	p.S606Y	.	.	217	61	155	0	.	90
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	301	36	245	0	A|0.500;T|0.500	90
NFASC	23114	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204970404	204970404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFASC	NM_001005388	exon26	c.G3126C	p.E1042D	.	.	297	25	198	2	.	139
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu	37	2	178098968	178098968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFE2L2	NM_006164	exon2	c.A77C	p.Q26P	.	.	64	4	34	0	.	90
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41048594	41048594	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NFYA	NM_002505	exon3	c.G120A	p.Q40Q	.	.	134	42	70	0	.	226
NGEF	25791	broad.mit.edu	37	2	233785254	233785254	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NGEF	NM_019850	exon5	c.G568T	p.E190X	.	.	101	5	61	0	.	313
NKX3-1	4824	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23538852	23538852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NKX3-1	NM_006167	exon2	c.C587T	p.S196F	.	.	38	18	59	1	.	90
NLN	57486	ucsc.edu	37	5	65108215	65108215	+	Silent	SNP	A	A	G	rs2254485	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NLN	NM_020726	exon12	c.A1977G	p.P659P	.	.	20	10	13	2	A|0.272;G|0.728	90
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247599337	247599337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NLRP3	NM_004895	exon6	c.A2564G	p.H855R	.	.	277	48	138	0	.	674
NPL	80896	hgsc.bcm.edu;broad.mit.edu	37	1	182794948	182794948	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NPL	NM_001200052	exon11	c.C686G	p.S229X	.	.	44	5	20	0	.	92
NRXN1	9378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50464017	50464017	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NRXN1	NM_001135659	exon19	c.G3576T	p.L1192L	.	.	268	71	196	1	.	92
NT5DC2	64943	broad.mit.edu	37	3	52559268	52559268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NT5DC2	NM_001134231	exon11	c.C1163T	p.P388L	.	.	285	8	279	0	.	514
NUDT12	83594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102895039	102895039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUDT12	NM_031438	exon3	c.G337A	p.E113K	.	.	143	35	67	0	.	90
NUFIP1	26747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	45563368	45563368	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUFIP1	NM_012345	exon1	c.204delC	p.P68fs	.	.	38	11	39	0	.	90
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229596501	229596502	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP133	NM_018230	exon20	c.2701_2702insT	p.L901fs	.	.	130	33	65	0	.	271
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131762026	131762026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP188	NM_015354	exon34	c.A3785T	p.K1262M	.	.	138	9	136	0	.	207
NUP93	9688	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56868090	56868090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NUP93	NM_014669	exon14	c.C1588T	p.R530W	.	.	91	25	80	1	.	205
NXF5	55998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	101095774	101095774	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	NXF5	NM_032946	exon9	c.C574G	p.L192V	.	.	293	54	234	0	.	204
NXPE2	120406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	114577377	114577377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_182495	exon6	c.A1405C	p.I469L	.	.	147	8	125	0	.	.
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220432567	220432567	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OBSL1	NM_001173431	exon3	c.G1407T	p.P469P	.	.	276	109	257	1	.	71
OLIG3	167826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	137815097	137815097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OLIG3	NM_175747	exon1	c.A211G	p.K71E	.	.	130	7	100	0	.	68
OPA1	4976	bcgsc.ca	37	3	193361221	193361221	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OPA1	NM_130837	exon14	c.A1365T	p.P455P	.	.	199	7	101	0	.	68
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107331510	107331510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR13C8	NM_001004483	exon1	c.C62A	p.P21Q	.	.	55	11	51	0	.	70
OR1C1	26188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247921053	247921053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR1C1	NM_012353	exon1	c.G656T	p.G219V	.	.	180	39	119	0	.	91
OR2Y1	134083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180166721	180166721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OR2Y1	NM_001001657	exon1	c.T338G	p.V113G	.	.	141	13	105	0	.	68
OTUD7B	56957	broad.mit.edu	37	1	149915875	149915875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	OTUD7B	NM_020205	exon12	c.C2413G	p.P805A	.	.	114	3	77	0	.	502
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122418685	122418685	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PARP14	NM_017554	exon6	c.A1284T	p.T428T	.	.	140	31	87	0	.	525
PCDHGC3	5098	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140856170	140856170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PCDHGC3	NM_032402	exon1	c.G487T	p.D163Y	.	.	274	27	197	2	.	24
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	17815276	17815276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PCM1	NM_006197	exon13	c.A2032G	p.M678V	.	.	69	8	98	0	.	742
PDCL2	132954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56422846	56422846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_152401	exon6	c.A604T	p.I202L	.	.	87	25	72	0	.	.
PDE4DIP	9659	broad.mit.edu	37	1	144855783	144855783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PDE4DIP	NM_014644	exon41	c.C6770T	p.A2257V	.	.	259	4	193	1	.	663
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	22442575	22442575	+	Missense_Mutation	SNP	T	T	A	rs2294049		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PDLIM2	NM_021630	exon5	c.T1111A	p.S371T	.	.	192	12	192	0	T|1.000;|0.000	90
PDPR	55066	hgsc.bcm.edu;broad.mit.edu	37	16	70170122	70170122	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PDPR	NM_017990	exon10	c.G1023A	p.R341R	.	.	158	7	148	0	.	135
PECR	55825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	216946374	216946397	+	In_Frame_Del	DEL	CGATGCCCGTGGCCCCGCCGGTGA	CGATGCCCGTGGCCCCGCCGGTGA	-	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	CGATGCCCGTGGCCCCGCCGGTGA	CGATGCCCGTGGCCCCGCCGGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PECR	NM_018441	exon1	c.68_91del	p.23_31del	.	.	227	42	184	0	.	90
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8047144	8047144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PER1	NM_002616	exon19	c.A2512G	p.K838E	.	.	41	6	36	0	.	723
PFKFB2	5208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207241653	207241653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PFKFB2	NM_001018053	exon10	c.C986T	p.A329V	.	.	89	6	48	0	.	91
PFKFB3	5209	bcgsc.ca	37	10	6245294	6245294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PFKFB3	NM_004566	exon1	c.C71T	p.P24L	.	.	63	4	64	0	.	117
PI4KAP1	728233	broad.mit.edu	37	22	20385730	20385730	+	RNA	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	1022	28	912	0	.	.
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	17141377	17141377	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PIK3C2A	NM_002645	exon15	c.G2802A	p.W934X	.	.	116	40	94	0	.	1310
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95791740	95791740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PLCE1	NM_016341	exon2	c.G937A	p.D313N	.	.	84	8	77	0	.	229
POU5F1B	5462	hgsc.bcm.edu;mdanderson.org	37	8	128428181	128428181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001159542	exon1	c.G70T	p.G24W	.	.	19	4	11	0	.	.
PRMT7	54496	ucsc.edu	37	16	68389772	68389772	+	Silent	SNP	C	C	T	rs1131933	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PRMT7	NM_019023	exon17	c.C1797T	p.T599T	.	.	29	4	28	0	C|0.488;T|0.512	90
PROM2	150696	broad.mit.edu	37	2	95954033	95954033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PROM2	NM_001165977	exon21	c.G2319A	p.M773I	.	.	83	4	77	0	.	91
PRSS1	5644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142458441	142458441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PRSS1	NM_002769	exon2	c.G76A	p.G26R	.	.	551	62	326	1	.	577
PSKH1	5681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67943502	67943502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PSKH1	NM_006742	exon2	c.G850T	p.G284C	.	.	130	38	104	0	.	333
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102988211	102988211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PSMC2	NM_001204453	exon1	c.A53C	p.D18A	.	.	181	79	155	0	.	90
PTCHD2	57540	ucsc.edu;bcgsc.ca	37	1	11589684	11589684	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTCHD2	NM_020780	exon14	c.T2870G	p.L957R	.	.	415	126	288	2	.	209
PTP4A3	11156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142435203	142435203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTP4A3	NM_032611	exon2	c.A161T	p.D54V	.	.	127	26	69	0	.	226
PTPN9	5780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75782644	75782644	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTPN9	NM_002833	exon9	c.969-2A>T	.	.	.	114	26	79	1	.	226
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70988332	70988332	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	PTPRB	NM_001109754	exon6	c.G1431A	p.G477G	.	.	290	82	222	0	.	226
QRFPR	84109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122301704	122301704	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	QRFPR	NM_198179	exon1	c.G99C	p.P33P	.	.	82	22	91	1	.	90
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	QRICH2	NM_032134	exon4	c.A1802T	p.D601V	.	.	423	24	271	3	.	94
RAC2	5880	broad.mit.edu;bcgsc.ca	37	22	37627372	37627372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RAC2	NM_002872	exon5	c.A347G	p.K116R	.	.	176	7	152	1	.	723
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79350802	79350802	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RASGRF1	NM_001145648	exon3	c.G405A	p.E135E	.	.	154	46	97	0	.	662
RBM12B	389677	hgsc.bcm.edu;broad.mit.edu	37	8	94747568	94747568	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RBM12B	NM_203390	exon3	c.A1071G	p.P357P	.	.	78	4	33	0	.	90
RFC4	5984	ucsc.edu	37	3	186510294	186510294	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RFC4	NM_181573	exon7	c.C660T	p.V220V	.	.	42	4	23	0	.	291
RFX7	64864	broad.mit.edu	37	15	56386251	56386251	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RFX7	NM_022841	exon9	c.A3675T	p.S1225S	.	.	124	4	78	1	.	90
RGAG1	57529	bcgsc.ca	37	X	109694685	109694685	+	Silent	SNP	T	T	A	rs2073787	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RGAG1	NM_020769	exon3	c.T840A	p.G280G	.	.	132	7	115	0	T|0.442;0|0.003	132
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24618693	24618693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RNF31	NM_017999	exon6	c.G710T	p.C237F	.	.	151	44	106	0	.	90
ROR2	4920	hgsc.bcm.edu;mdanderson.org	37	9	94495598	94495598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ROR2	NM_004560	exon6	c.C743G	p.P248R	.	.	26	10	25	0	.	1471
RP2	6102	bcgsc.ca	37	X	46719498	46719498	+	Missense_Mutation	SNP	C	C	T	rs1805147	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RP2	NM_006915	exon3	c.C844T	p.R282W	.	.	126	6	143	0	C|0.979;0|0.003	130
RPRD1A	55197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33573185	33573185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RPRD1A	NM_018170	exon7	c.T868C	p.S290P	.	.	127	40	101	0	.	154
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137300011	137300011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RXRA	NM_002957	exon3	c.A296G	p.N99S	.	.	150	49	118	1	.	188
RYR2	6262	broad.mit.edu	37	1	237550666	237550666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RYR2	NM_001035	exon9	c.G662T	p.S221I	.	.	189	6	118	0	.	158
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33855053	33855053	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	RYR3	NM_001243996	exon11	c.T988A	p.L330I	.	.	98	33	66	1	.	520
SARS2	54938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39421333	39421333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SARS2	NM_001145901	exon1	c.G44A	p.R15H	.	.	67	33	56	0	.	93
SATL1	340562	bcgsc.ca	37	X	84363140	84363140	+	Missense_Mutation	SNP	A	A	G	rs10126146	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SATL1	NM_001012980	exon1	c.T835C	p.W279R	.	.	213	7	166	2	A|0.262;0|0.014	175
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76994169	76994169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SCAPER	NM_020843	exon19	c.G2438C	p.G813A	.	.	63	17	52	0	.	137
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38622799	38622799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SCN5A	NM_001160160	exon17	c.G2851A	p.D951N	.	.	316	29	219	0	.	98
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4091432	4091432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SDK1	NM_152744	exon19	c.A2881T	p.T961S	.	.	193	16	127	0	.	138
SDK2	54549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71443757	71443757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SDK2	NM_001144952	exon5	c.G610A	p.E204K	.	.	464	61	236	1	.	24
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83643576	83643576	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SEMA3A	NM_006080	exon7	c.T759C	p.D253D	.	.	100	46	64	0	.	156
SERPINC1	462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173880936	173880936	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SERPINC1	NM_000488	exon4	c.624+1G>A	.	.	.	180	71	126	0	.	227
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26706735	26706735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SEZ6L	NM_021115	exon7	c.C1614A	p.N538K	.	.	194	58	182	0	.	95
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49254841	49254841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SHC4	NM_203349	exon1	c.C372A	p.D124E	.	.	100	37	68	0	.	95
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48533795	48533795	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC12A1	NM_001184832	exon10	c.A1299G	p.V433V	.	.	167	58	100	0	.	24
SLC18A2	6571	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119003680	119003680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC18A2	NM_003054	exon3	c.T320C	p.V107A	.	.	176	20	163	1	.	90
SLC22A18AS	5003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2920824	2920824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_007105	exon3	c.G108C	p.R36S	.	.	66	17	49	0	.	.
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62768191	62768191	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC22A8	NM_004254	exon4	c.437+1G>T	.	.	.	184	8	125	0	.	93
SLC23A1	9963	broad.mit.edu;bcgsc.ca	37	5	138715446	138715446	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC23A1	NM_152685	exon8	c.A858C	p.K286N	.	.	312	9	240	1	.	90
SLC24A2	25769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19528053	19528053	+	Silent	SNP	C	C	T	rs201117303		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SLC24A2	NM_020344	exon8	c.G1563A	p.A521A	.	.	112	42	98	1	C|0.999;T|0.000	517
SNRPN	6638	broad.mit.edu;bcgsc.ca	37	15	25221503	25221503	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SNRPN	NM_022807	exon9	c.G207T	p.L69L	.	.	157	7	128	1	.	469
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39249927	39249927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SOS1	NM_005633	exon10	c.A1642G	p.S548G	.	.	123	43	69	0	.	851
SPCS2	9789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74676881	74676881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SPCS2	NM_014752	exon3	c.C272A	p.S91Y	.	.	68	22	66	0	.	113
SPI1	6688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47381502	47381502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SPI1	NM_001080547	exon3	c.C235A	p.P79T	.	.	28	9	23	0	.	226
SPTBN4	57731	broad.mit.edu	37	19	41009866	41009866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SPTBN4	NM_020971	exon12	c.G1492A	p.E498K	.	.	49	3	67	0	.	94
STRADB	55437	hgsc.bcm.edu	37	2	202344880	202344880	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	STRADB	NM_018571	exon12	c.C1239T	p.D413D	.	.	144	7	85	0	.	522
SUN1	23353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	905675	905675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SUN1	NM_001130965	exon16	c.T1951G	p.F651V	.	.	189	87	82	0	.	90
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27023949	27023949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SUPT6H	NM_003170	exon30	c.G4058A	p.G1353D	.	.	265	91	183	0	.	93
SVEP1	79987	broad.mit.edu	37	9	113170570	113170570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SVEP1	NM_153366	exon38	c.C7310A	p.P2437Q	.	.	107	4	91	0	.	75
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64457170	64457170	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SYNE2	NM_182914	exon20	c.A2355G	p.A785A	.	.	144	18	139	0	.	164
SYNPR	132204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	63594864	63594864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001130003	exon5	c.G472A	p.G158R	.	.	219	64	172	1	.	.
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55686689	55686689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	SYT5	NM_003180	exon6	c.G559T	p.G187W	.	.	56	12	35	0	.	90
TAAR9	134860	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132859671	132859671	+	RNA	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	.	.	.	312	119	205	0	.	.
TAS2R10	50839	broad.mit.edu	37	12	10978297	10978297	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TAS2R10	NM_023921	exon1	c.T572G	p.I191S	.	.	34	10	41	1	.	90
TBL1X	6907	broad.mit.edu;bcgsc.ca	37	X	9656119	9656119	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TBL1X	NM_001139466	exon7	c.C420T	p.P140P	.	.	184	7	145	1	.	131
TBX20	57057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35242186	35242186	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TBX20	NM_001077653	exon8	c.G1200T	p.S400S	.	.	425	95	270	1	.	90
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62248484	62248484	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TEX2	NM_018469	exon7	c.T2668A	p.F890I	.	.	219	30	131	0	.	91
TEX26	122046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	31549019	31549019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_152325	exon7	c.G845A	p.C282Y	.	.	101	20	58	0	.	.
TGFB1I1	7041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31487440	31487440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TGFB1I1	NM_001042454	exon8	c.C822A	p.F274L	.	.	76	19	63	0	.	90
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137990568	137990568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	THSD7B	.	.	.	.	.	.	344	86	227	1	.	75
TICAM1	148022	broad.mit.edu;mdanderson.org	37	19	4818030	4818030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TICAM1	NM_182919	exon2	c.A360C	p.E120D	.	.	30	5	36	0	.	153
TMEM194B	100131211	broad.mit.edu;bcgsc.ca	37	2	191383480	191383480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_001142645	exon4	c.A500G	p.Y167C	.	.	113	6	90	0	.	.
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24834929	24834929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TNRC6A	NM_014494	exon25	c.T5690G	p.L1897R	.	.	138	27	122	0	.	92
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32036335	32036335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TNXB	NM_019105	exon17	c.C6052G	p.L2018V	.	.	239	37	163	0	.	90
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230632438	230632438	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TRIP12	NM_004238	exon41	c.A5811T	p.T1937T	.	.	71	18	37	0	.	572
TSC1	7248	bcgsc.ca	37	9	135786904	135786904	+	Missense_Mutation	SNP	A	A	G	rs1073123	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	TSC1	NM_000368	exon10	c.T965C	p.M322T	.	.	169	6	160	0	A|0.859;C|0.001	1906
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_145301	exon3	c.G152A	p.C51Y	.	.	377	21	261	12	.	.
UPF3A	65110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	115052106	115052106	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	UPF3A	NM_080687	exon4	c.532+2T>C	.	.	.	237	23	175	0	.	91
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	216371756	216371756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USH2A	NM_007123	exon18	c.G3982A	p.G1328S	.	.	191	13	115	0	.	115
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216040372	216040372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USH2A	NM_206933	exon44	c.T8822C	p.I2941T	.	.	218	22	127	0	.	115
USP17L2	377630	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	11995368	11995368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	USP17L2	NM_201402	exon1	c.T902C	p.L301P	.	.	220	22	176	0	.	435
UTP20	27340	hgsc.bcm.edu	37	12	101748856	101748856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	UTP20	NM_014503	exon41	c.G5354T	p.G1785V	.	.	91	4	57	0	.	155
VWDE	221806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12409576	12409576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	VWDE	NM_001135924	exon12	c.G2356T	p.D786Y	.	.	158	65	112	0	.	68
WIZ	58525	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15538010	15538010	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	WIZ	NM_021241	exon4	c.C864T	p.G288G	.	.	107	34	94	1	.	68
XPO6	23214	broad.mit.edu;ucsc.edu	37	16	28167815	28167815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	XPO6	NM_015171	exon7	c.G677A	p.S226N	.	.	93	11	64	1	.	227
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100364744	100364744	+	RNA	SNP	G	G	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZAN	.	.	.	.	.	.	196	24	141	0	.	142
ZBTB4	57659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7370078	7370078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZBTB4	NM_001128833	exon3	c.G43A	p.A15T	.	.	45	13	40	0	.	93
ZC3H10	84872	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56515237	56515237	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZC3H10	NM_032786	exon3	c.C891T	p.P297P	.	.	85	33	91	1	.	90
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44980916	44980916	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF180	NM_013256	exon5	c.A1782T	p.V594V	.	.	92	39	62	0	.	92
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97917317	97917317	+	RNA	SNP	G	G	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF518A	.	.	.	.	.	.	196	47	131	0	.	23
ZNF658	26149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	40773313	40773313	+	Silent	SNP	C	C	A	rs138850783	alternate_allele	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF658	NM_033160	exon5	c.G1962T	p.G654G	.	.	130	20	134	1	C|1.000;G|0.000	45
ZNF738	148203	ucsc.edu	37	19	21564384	21564384	+	RNA	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF738	.	.	.	.	.	.	30	6	31	0	.	68
ZNF853	54753	broad.mit.edu	37	7	6660790	6660790	+	Silent	SNP	G	G	A	rs940873	byfrequency	TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	NM_017560	exon3	c.G168A	p.E56E	.	.	148	5	82	2	G|0.644;A|0.356	.
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	22940610	22940610	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF99	NM_001080409	exon4	c.G2101T	p.G701X	.	.	33	9	21	0	.	24
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22940609	22940609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	ZNF99	NM_001080409	exon4	c.G2102T	p.G701V	.	.	33	9	21	0	.	24
TUBB4A	10382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6495192	6495193	+	Missense_Mutation	DNP	CC	CC	GG	novel		TCGA-DD-A4NI-01A-11D-A27I-10	TCGA-DD-A4NI-10A-01D-A27I-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c154a63e-d2e1-4abb-83fe-62a5a5a70b33	63af893a-b381-43ba-8feb-c3221799df94	.	.	.	.	.	p.E440Q	.	.	.	.	.	.	.	
