Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC6P1	653190	broad.mit.edu	37	16	18597194	18597194	+	RNA	SNP	C	C	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	.	.	636	8	479	0	.	.
ACRC	93953	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70823980	70823980	+	Missense_Mutation	SNP	T	T	C	rs199853865		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ACRC	NM_052957	exon8	c.T853C	p.S285P	.	.	191	38	159	2	.	93
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127798378	127798378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADAM12	NM_021641	exon7	c.A644G	p.Y215C	.	.	68	21	78	0	.	716
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100594228	100594228	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADAMTS17	NM_139057	exon16	c.C2169T	p.N723N	.	.	301	143	101	0	.	228
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131949435	131949435	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADCY8	NM_001115	exon5	c.C1365T	p.C455C	.	.	225	50	135	0	.	157
ANGPT4	51378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	861812	861812	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ANGPT4	NM_015985	exon6	c.951+2T>G	.	.	.	144	51	118	0	.	92
ANKFN1	162282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	54558126	54558126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ANKFN1	NM_153228	exon16	c.C2047T	p.L683F	.	.	129	22	71	0	.	136
ANKLE1	126549	broad.mit.edu	37	19	17394983	17394983	+	Silent	SNP	G	G	A	rs201964957		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_152363	exon6	c.G1284A	p.A428A	.	.	254	5	239	1	G|0.999;A|0.000	.
ANKRD18B	441459	bcgsc.ca	37	9	33541197	33541197	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001244752	exon7	c.A861T	p.K287N	.	.	216	18	179	3	.	.
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10468488	10468488	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	APCDD1	NM_153000	exon2	c.C81T	p.L27L	.	.	135	51	110	0	.	90
AQP7	364	ucsc.edu	37	9	33385808	33385808	+	Missense_Mutation	SNP	G	G	T	rs62542744	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	AQP7	NM_001170	exon7	c.C582A	p.N194K	.	.	95	10	69	2	G|0.919;T|0.081	90
ARL5C	390790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	37319108	37319108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ARL5C	NM_001143968	exon3	c.G111C	p.L37F	.	.	144	11	128	0	.	68
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	150878543	150878543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ASB10	NM_001142459	exon3	c.G587A	p.C196Y	.	.	111	41	82	0	.	226
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96803391	96803391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ASTL	NM_001002036	exon2	c.G104A	p.G35D	.	.	80	11	66	0	.	90
BORA	79866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73312100	73312100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_024808	exon5	c.T307C	p.F103L	.	.	71	18	96	0	.	.
BPNT1	10380	ucsc.edu	37	1	220231275	220231275	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	BPNT1	.	.	.	.	.	.	114	1	80	0	.	91
BRCA2	675	broad.mit.edu	37	13	32890650	32890650	+	Missense_Mutation	SNP	G	G	A	rs80358762		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	BRCA2,brain,glioma,0	BRCA2	NM_000059	exon2	c.G53A	p.R18H	.	.	74	4	88	0	G|0.999;A|0.001	3153
C11orf40	143501	hgsc.bcm.edu	37	11	4592708	4592708	+	Missense_Mutation	SNP	C	C	G	rs79804156		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C11orf40	NM_144663	exon4	c.G599C	p.C200S	.	.	162	11	170	0	.	92
C11orf70	85016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101952001	101952001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C11orf70	NM_032930	exon6	c.G664A	p.V222I	.	.	32	7	28	0	.	91
C19orf35	374872	hgsc.bcm.edu;bcgsc.ca	37	19	2280897	2280897	+	Missense_Mutation	SNP	C	C	T	rs146892754		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C19orf35	NM_198532	exon2	c.G34A	p.E12K	.	.	44	4	28	0	C|1.000;T|0.000	91
C1QTNF3	114899	broad.mit.edu;bcgsc.ca	37	5	34024046	34024056	+	Frame_Shift_Del	DEL	CATAAGGTACA	CATAAGGTACA	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CATAAGGTACA	CATAAGGTACA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C1QTNF3	NM_181435	exon5	c.758_768del	p.253_256del	.	.	209	9	177	0	.	90
CAPRIN1	4076	broad.mit.edu	37	11	34118806	34118806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CAPRIN1	NM_203364	exon17	c.A1964C	p.Q655P	.	.	190	6	169	0	.	91
CCDC88C	440193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91780183	91780183	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CCDC88C	NM_001080414	exon15	c.G1977A	p.E659E	.	.	49	17	62	1	.	25
CD101	9398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117554255	117554255	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CD101	NM_001256109	exon3	c.G508C	p.A170P	.	.	235	34	138	0	.	94
CD200	4345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112066565	112066565	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CD200	NM_001004196	exon5	c.T657A	p.S219S	.	.	189	29	129	1	.	90
CDH3	1001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68721498	68721498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CDH3	NM_001793	exon12	c.C1654A	p.Q552K	.	.	214	111	247	0	.	950
CIDEC	63924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9911995	9911995	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CIDEC	NM_001199623	exon4	c.T258C	p.T86T	.	.	68	11	46	0	.	90
CLCNKB	1188	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16374904	16374904	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CLCNKB	NM_000085	exon6	c.G565C	p.G189R	.	.	595	67	519	1	.	91
CNTN5	53942	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99827704	99827704	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CNTN5	NM_001243270	exon7	c.C840T	p.V280V	.	.	225	86	197	1	.	366
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189873705	189873705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	COL3A1	NM_000090	exon48	c.G3581A	p.G1194D	.	.	110	16	131	0	.	581
DACT2	168002	broad.mit.edu	37	6	168711083	168711083	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DACT2	NM_214462	exon3	c.G423A	p.T141T	.	.	403	7	433	0	.	226
DNAJB14	79982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100844269	100844270	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DNAJB14	NM_001031723	exon3	c.379_380insA	p.A127fs	.	.	168	48	155	0	.	226
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35013135	35013135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DPY19L1	NM_015283	exon8	c.A686G	p.H229R	.	.	132	37	113	0	.	68
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35013143	35013143	+	Silent	SNP	T	T	C	rs61744367	byfrequency;alternate_allele	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DPY19L1	NM_015283	exon8	c.A678G	p.L226L	.	.	133	38	114	0	T|0.974;A|0.026	68
DSC1	1823	broad.mit.edu	37	18	28742539	28742539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DSC1	NM_004948	exon1	c.G19A	p.A7T	.	.	238	8	187	0	.	94
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56494239	56494239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DST	NM_001723	exon18	c.A2673T	p.Q891H	.	.	61	23	48	0	.	523
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131665456	131665456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EBF3	NM_001005463	exon10	c.T961C	p.Y321H	.	.	154	49	117	0	.	91
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14877174	14877174	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EMR2	NM_001271052	exon6	c.C507A	p.S169S	.	.	166	39	184	1	.	524
EP400	57634	bcgsc.ca	37	12	132547096	132547096	+	Silent	SNP	G	G	A	rs74479394		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EP400	NM_015409	exon47	c.G8184A	p.Q2728Q	.	.	160	7	181	0	.	520
EYS	346007	broad.mit.edu	37	6	66005888	66005888	+	Missense_Mutation	SNP	C	C	T	rs9342464	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EYS	NM_001142800	exon12	c.G1891A	p.G631S	.	.	139	4	90	0	C|0.404;T|0.596	660
F2	2147	bcgsc.ca	37	11	46745003	46745003	+	Missense_Mutation	SNP	C	C	T	rs5896	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	F2	NM_000506	exon6	c.C494T	p.T165M	.	.	172	6	117	0	C|0.835;T|0.165	93
FBXL20	84961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37421707	37421707	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FBXL20	NM_001184906	exon13	c.838-1G>T	.	.	.	83	36	56	0	.	659
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	224345363	224345363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FBXO28	NM_015176	exon5	c.A1022T	p.N341I	.	.	244	11	156	0	.	661
FLYWCH2	114984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2946481	2946481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FLYWCH2	NM_001142499	exon3	c.G31A	p.G11S	.	.	55	11	48	0	.	22
FZD2	2535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	42635258	42635258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FZD2	NM_001466	exon1	c.G202T	p.D68Y	.	.	349	22	255	0	.	660
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121747764	121747764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	GLI2	NM_005270	exon13	c.G4274T	p.G1425V	.	.	140	55	93	0	.	954
HPX	3263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6453126	6453127	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HPX	NM_000613	exon8	c.956_957del	p.319_319del	.	.	51	15	68	0	.	90
HSD17B7P2	158160	broad.mit.edu;ucsc.edu	37	10	38647315	38647315	+	RNA	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	.	.	133	51	124	0	.	.
HSP90AA1	3320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	102551156	102551178	+	Frame_Shift_Del	DEL	CTTAATCTTCTTCTTCTTCTTCT	CTTAATCTTCTTCTTCTTCTTCT	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CTTAATCTTCTTCTTCTTCTTCT	CTTAATCTTCTTCTTCTTCTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HSP90AA1	NM_001017963	exon6	c.1187_1209del	p.396_403del	.	.	94	11	80	0	.	949
HYDIN2	100288805	bcgsc.ca	37	1	146320929	146320929	+	RNA	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	.	.	136	106	70	1	.	.
IAH1	285148	broad.mit.edu	37	2	9618371	9618371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IAH1	NM_001039613	exon3	c.G155A	p.R52H	.	.	102	4	77	0	.	22
IL36B	27177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	113786633	113786633	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IL36B	NM_173178	exon4	c.T144A	p.C48X	.	.	117	19	101	0	.	23
INADL	10207	broad.mit.edu	37	1	62263013	62263013	+	Nonsense_Mutation	SNP	C	C	T	rs200079447		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	INADL	NM_176877	exon11	c.C1315T	p.R439X	.	.	321	8	203	1	C|0.999;T|0.001	94
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	271125	271125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IQSEC3	NM_001170738	exon8	c.T2477A	p.L826Q	.	.	215	106	232	0	.	560
IRS4	8471	broad.mit.edu;mdanderson.org	37	X	107979138	107979138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IRS4	NM_003604	exon1	c.G437A	p.R146H	.	.	93	17	70	0	.	623
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599429	3599429	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IRX1	NM_024337	exon2	c.T367A	p.F123I	.	.	116	13	89	0	.	228
ITGB8	3696	ucsc.edu;bcgsc.ca	37	7	20418678	20418678	+	Silent	SNP	C	C	T	rs3735619	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ITGB8	NM_002214	exon4	c.C393T	p.A131A	.	.	28	4	27	0	C|0.849;N|0.000	227
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	90651290	90651290	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KCNK13	NM_022054	exon2	c.G1170T	p.G390G	.	.	63	16	55	0	.	91
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	78761222	78761222	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KCNMA1	NM_001161352	exon19	c.A2209T	p.R737X	.	.	302	39	228	0	.	93
KIAA1984	84960	bcgsc.ca	37	9	139693596	139693596	+	Missense_Mutation	SNP	T	T	C	rs945386	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KIAA1984	NM_001039374	exon2	c.T113C	p.M38T	.	.	138	6	138	1	T|0.759;C|0.241	91
KLHL33	123103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20897132	20897132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001109997	exon4	c.G1478T	p.R493L	.	.	151	56	91	0	.	.
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53074087	53074087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRT1	NM_006121	exon1	c.G46T	p.G16C	.	.	187	22	172	0	.	92
KRT2	3849	hgsc.bcm.edu	37	12	53045641	53045642	+	In_Frame_Ins	INS	-	-	GCCGCTGCCGCCTCCAAA	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRT2	NM_000423	exon1	c.286_287insTTTGGAGGCGGCAGCGGC	p.F96delinsFGGGSGF	.	.	221	80	136	0	.	92
KRTAP5-7	440050	hgsc.bcm.edu;broad.mit.edu	37	11	71238649	71238675	+	In_Frame_Del	DEL	CTGCTGCTCCTCAGGCTGTGGGTCATC	CTGCTGCTCCTCAGGCTGTGGGTCATC	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CTGCTGCTCCTCAGGCTGTGGGTCATC	CTGCTGCTCCTCAGGCTGTGGGTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRTAP5-7	NM_001012503	exon1	c.303_329del	p.101_110del	.	.	194	35	158	0	.	68
LGR5	8549	broad.mit.edu	37	12	71978006	71978006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	LGR5	NM_003667	exon18	c.T2216G	p.M739R	.	.	285	5	220	0	.	527
LOC150776	0	broad.mit.edu	37	2	132277962	132277962	+	RNA	SNP	T	T	C	rs7560296	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	.	.	119	5	116	0	T|0.510;C|0.490	.
LOC150776	0	broad.mit.edu	37	2	132277984	132277984	+	RNA	SNP	G	G	A	rs10209980	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	.	.	91	5	105	0	G|0.669;A|0.331	.
LPIN3	64900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39985824	39985824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	LPIN3	NM_022896	exon15	c.A1948G	p.T650A	.	.	239	83	154	1	.	93
MAP10	54627	broad.mit.edu	37	1	232943302	232943302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_019090	exon1	c.G2533A	p.D845N	.	.	107	6	61	1	.	.
MICALCL	84953	hgsc.bcm.edu	37	11	12316389	12316389	+	Missense_Mutation	SNP	A	A	C	rs3812754		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MICALCL	NM_032867	exon3	c.A1411C	p.T471P	.	.	6	6	0	0	A|0.649;C|0.351	91
MIR1229	100302156	ucsc.edu;mdanderson.org	37	5	179225329	179225329	+	RNA	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	.	.	126	28	87	1	.	.
MRPL53	116540	broad.mit.edu	37	2	74699359	74699359	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MRPL53	NM_053050	exon3	c.A226C	p.M76L	.	.	158	4	117	0	.	90
MS4A10	341116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60561505	60561505	+	Missense_Mutation	SNP	G	G	A	rs200380093		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MS4A10	NM_206893	exon5	c.G421A	p.V141I	.	.	170	78	146	0	.	92
MTAP	4507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21838002	21838002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MTAP	NM_002451	exon5	c.C443T	p.T148M	.	.	152	61	109	0	.	651
MUT	4594	ucsc.edu	37	6	49427092	49427092	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MUT	NM_000255	exon2	c.C88T	p.Q30X	.	.	39	4	55	0	.	91
NBEAP1	606	broad.mit.edu;bcgsc.ca	37	15	20876516	20876516	+	RNA	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	.	.	206	14	162	0	.	.
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	351	39	265	1	A|0.500;T|0.500	90
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29553694	29553694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NF1	NM_000267	exon18	c.T2243G	p.M748R	.	.	91	40	65	0	.	3353
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	129762747	129762747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NFRKB	NM_006165	exon1	c.A37G	p.T13A	.	.	174	24	153	0	.	93
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5821238	5821238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NLGN4X	NM_181332	exon5	c.C1481A	p.P494H	.	.	589	134	431	0	.	195
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56244429	56244429	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NLRP9	NM_176820	exon2	c.C768G	p.I256M	.	.	49	13	48	0	.	294
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79434590	79434590	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NRXN3	NM_004796	exon11	c.T1924A	p.F642I	.	.	196	49	169	0	.	587
OGDHL	55753	ucsc.edu	37	10	50943370	50943370	+	Silent	SNP	T	T	G	rs202098621	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	OGDHL	NM_018245	exon23	c.A2937C	p.A979A	.	.	175	13	106	8	T|0.998;G|0.002	69
OR6C75	390323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55759405	55759405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	OR6C75	NM_001005497	exon1	c.G511T	p.V171L	.	.	117	42	106	0	.	70
PAX2	5076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102509535	102509535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PAX2	NM_003987	exon2	c.G76A	p.V26M	.	.	28	9	24	0	.	90
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138450774	138450774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PCDH18	NM_019035	exon1	c.C2469A	p.H823Q	.	.	170	56	180	0	.	185
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140348025	140348025	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PCDHAC2	NM_031883	exon1	c.A1674G	p.P558P	.	.	160	55	129	0	.	26
PEG10	23089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94293118	94293118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PEG10	NM_001172438	exon2	c.G478A	p.E160K	.	.	173	37	116	0	.	23
PFKFB1	5207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54978366	54978366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PFKFB1	NM_002625	exon8	c.A818C	p.D273A	.	.	235	70	206	0	.	131
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58416548	58416548	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PHACTR3	NM_080672	exon11	c.G1545A	p.R515R	.	.	256	38	218	0	.	93
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96435949	96435949	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PHF2	NM_005392	exon18	c.C2431T	p.L811L	.	.	233	78	182	0	.	91
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9777146	9777146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PIK3CD	NM_005026	exon7	c.C910T	p.P304S	.	.	260	94	238	0	.	1311
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153034490	153034490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PLXNB3	NM_001163257	exon6	c.G1423A	p.D475N	.	.	183	10	141	0	.	130
POC1B	282809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89891089	89891089	+	Missense_Mutation	SNP	A	A	G	rs111514387		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	POC1B	NM_172240	exon3	c.T131C	p.L44P	.	.	157	22	87	1	A|0.500;G|0.500	92
POLR2B	5431	broad.mit.edu	37	4	57896508	57896508	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	POLR2B	NM_000938	exon24	c.G3378A	p.A1126A	.	.	131	5	118	1	.	92
PRELID1	27166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176732982	176732982	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PRELID1	NM_013237	exon3	c.C429G	p.V143V	.	.	76	22	54	1	.	90
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158906744	158906744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PYHIN1	NM_152501	exon2	c.A44G	p.E15G	.	.	196	24	136	0	.	94
RASAL2	9462	broad.mit.edu	37	1	178427003	178427003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RASAL2	NM_170692	exon14	c.C2576T	p.A859V	.	.	250	5	118	0	.	155
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	48941636	48941636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RB1	NM_000321	exon10	c.A946T	p.N316Y	.	.	11	5	23	0	.	3784
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	48951170	48951170	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	RB1,fibrous_tissue_and_uncertain_origin,malignant_fibrous_histiocytoma-pleomorphic_sarcoma,0	RB1	NM_000321	exon13	c.G1332A	p.Q444Q	.	.	43	21	47	0	.	3784
RGN	9104	broad.mit.edu;bcgsc.ca	37	X	46940676	46940676	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RGN	NM_004683	exon2	c.T133A	p.F45I	.	.	220	8	167	0	.	130
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	117709158	117709158	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ROS1	NM_002944	exon13	c.T1799G	p.L600X	.	.	77	43	76	0	.	1353
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39018424	39018424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RYR1	NM_000540	exon73	c.G10824T	p.Q3608H	.	.	120	29	113	0	.	100
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70348970	70348970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SHANK2	NM_133266	exon3	c.A364T	p.N122Y	.	.	148	43	102	0	.	94
SLC20A1	6574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113416962	113416962	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC20A1	NM_005415	exon8	c.A1230G	p.K410K	.	.	276	87	250	1	.	92
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142231676	142231676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC45A4	NM_001080431	exon2	c.G277A	p.G93S	.	.	231	46	113	0	.	70
SLC4A3	6508	hgsc.bcm.edu	37	2	220500541	220500541	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC4A3	NM_201574	exon14	c.C2200T	p.Q734X	.	.	85	4	96	0	.	157
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78202323	78202323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SNW1	NM_012245	exon7	c.C665G	p.P222R	.	.	30	9	35	0	.	187
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16261862	16261862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SPEN	NM_015001	exon11	c.A9127G	p.S3043G	.	.	785	160	690	0	.	298
SSC5D	284297	hgsc.bcm.edu	37	19	56029621	56029621	+	Silent	SNP	A	A	C	rs202012508		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001144950	exon14	c.A3978C	p.T1326T	.	.	146	13	129	0	.	.
STMN3	50861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62275626	62275626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	STMN3	NM_015894	exon2	c.C56T	p.S19L	.	.	126	41	85	0	.	90
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56398608	56398608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SUOX	NM_000456	exon6	c.G1435A	p.E479K	.	.	210	22	169	0	.	90
SYNJ2BP-COX16	0	ucsc.edu	37	14	70793055	70793055	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001202547	exon6	c.A571T	p.T191S	.	.	16	1	15	0	.	.
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55687105	55687105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SYT5	NM_003180	exon5	c.C512G	p.P171R	.	.	351	67	273	0	.	90
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	104640550	104640550	+	Missense_Mutation	SNP	C	C	A	rs139574028	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TACR3	NM_001059	exon1	c.G283T	p.V95L	.	.	174	11	189	0	C|0.999;A|0.001	525
TAF7L	54457	bcgsc.ca	37	X	100532621	100532621	+	Missense_Mutation	SNP	T	T	C	rs35899692	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TAF7L	NM_024885	exon9	c.A922G	p.S308G	.	.	124	5	138	0	0|0.013;C|0.185	130
TCAIM	285343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44442771	44442771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_173826	exon10	c.T1195A	p.W399R	.	.	83	29	49	0	.	.
THOP1	7064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2794767	2794767	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	THOP1	NM_003249	exon3	c.A235C	p.R79R	.	.	77	12	88	0	.	92
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2591138	2591138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMC2	NM_080751	exon12	c.A1487T	p.Y496F	.	.	259	34	224	0	.	93
TMEM232	642987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109976647	109976647	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001039763	exon4	c.T288A	p.P96P	.	.	383	113	279	0	.	.
TMPRSS3	64699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43808542	43808542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMPRSS3	NM_001256317	exon5	c.A416G	p.N139S	.	.	288	94	172	0	.	155
TREX1	11277	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48508185	48508185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TREX1	NM_016381	exon1	c.T296C	p.L99P	.	.	210	69	172	2	.	227
TRMT2A	27037	broad.mit.edu	37	22	20102529	20102529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TRMT2A	NM_001257994	exon5	c.C964T	p.R322C	.	.	115	4	83	0	.	153
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38538717	38538717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TTC3	NM_001001894	exon33	c.G4201A	p.A1401T	.	.	210	61	148	0	.	590
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179424403	179424403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TTN	NM_001267550	exon326	c.A86456G	p.D28819G	.	.	134	22	164	0	.	636
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103324043	103324043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	UBR5	NM_015902	exon19	c.C2338G	p.Q780E	.	.	386	58	195	0	.	761
UEVLD	55293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18579874	18579874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	UEVLD	NM_018314	exon7	c.A616C	p.I206L	.	.	69	8	62	0	.	226
WHAMMP2	440253	ucsc.edu	37	15	28991148	28991148	+	RNA	SNP	G	G	C	rs200178304		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	.	.	56	5	55	0	G|0.998;C|0.002	.
ZBTB11	27107	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	101383939	101383939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZBTB11	NM_014415	exon4	c.C1492T	p.P498S	.	.	176	21	126	0	.	91
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79733987	79733987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZFYVE16	NM_001105251	exon4	c.T1483G	p.C495G	.	.	139	7	89	0	.	90
ZMYM4	9202	broad.mit.edu;bcgsc.ca	37	1	35855617	35855617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZMYM4	NM_005095	exon15	c.G2505A	p.M835I	.	.	136	6	140	1	.	291
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	133	45	65	1	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	108	34	56	0	.	.
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104642627	104642628	+	Missense_Mutation	DNP	AG	AG	CT	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.S1168L	.	.	.	.	.	.	.	
HTR3C	170572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183777775	183777776	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.P362Q	.	.	.	.	.	.	.	
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12861637	12861638	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.D1000Y	.	.	.	.	.	.	.	
