Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48287835	48287835	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ABCA13	NM_152701	exon14	c.1660-1G>T	.	.	.	106	74	88	0	.	521
ACVR2A	92	hgsc.bcm.edu;bcgsc.ca	37	2	148684653	148684659	+	Frame_Shift_Del	DEL	TGGCAAT	TGGCAAT	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	TGGCAAT	TGGCAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ACVR2A	NM_001616	exon11	c.1352_1358del	p.451_453del	.	.	71	13	116	0	.	831
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18777771	18777771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ADAMTSL1	NM_001040272	exon19	c.G3544A	p.V1182I	.	.	185	33	199	0	.	230
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100235183	100235183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ADH1B	NM_000668	exon6	c.C623T	p.A208V	.	.	217	49	331	0	.	136
ADH1C	126	broad.mit.edu	37	4	100264201	100264201	+	RNA	SNP	C	C	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	.	.	.	.	.	.	136	9	154	0	.	.
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74274521	74274524	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ALB	NM_000477	exon4	c.481_482del	p.161_161del	.	.	47	13	57	0	.	96
ANKRD36BP2	645784	broad.mit.edu	37	2	89102229	89102229	+	RNA	SNP	G	G	A	rs112683162		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	.	.	.	.	.	.	24	5	30	0	.	.
APBA1	320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	72131731	72131731	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	APBA1	NM_001163	exon2	c.G396A	p.Q132Q	.	.	27	12	56	0	.	91
AQP7	364	bcgsc.ca	37	9	33385808	33385808	+	Missense_Mutation	SNP	G	G	T	rs62542744	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	AQP7	NM_001170	exon7	c.C582A	p.N194K	.	.	83	10	93	2	G|0.919;T|0.081	90
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	73020363	73020363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ARHGEF17	NM_014786	exon1	c.C680A	p.A227D	.	.	138	55	191	0	.	227
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99022509	99022509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_001198879	exon7	c.G1793A	p.R598K	.	.	98	28	92	0	.	.
ATRX	546	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	X	76938217	76938217	+	Missense_Mutation	SNP	G	G	A	rs139131007	byfrequency;alternate_allele	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ATRX	NM_000489	exon9	c.C2531T	p.T844I	.	.	14	5	12	0	G|0.999;T|0.001	248
ATXN1	6310	broad.mit.edu	37	6	16327921	16327921	+	Missense_Mutation	SNP	C	C	A	rs201030692		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ATXN1	NM_001128164	exon7	c.G621T	p.Q207H	.	.	68	12	86	0	.	93
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28846465	28846465	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ATXN2L	NM_148414	exon19	c.T2520A	p.P840P	.	.	118	38	154	0	.	92
BBS12	166379	bcgsc.ca	37	4	123664445	123664445	+	Silent	SNP	C	C	T	rs2292493	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BBS12	NM_001178007	exon3	c.C1398T	p.G466G	.	.	140	5	143	1	C|0.818;T|0.182	92
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	112070431	112070431	+	Missense_Mutation	SNP	A	A	G	rs146824071	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BCO2	NM_031938	exon6	c.A746G	p.Y249C	.	.	62	26	64	0	A|0.998;G|0.002	68
BCYRN1	618	bcgsc.ca	37	X	70883948	70883948	+	RNA	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	.	.	.	.	.	.	52	19	92	0	.	.
BEND5	79656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	49208383	49208383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BEND5	NM_024603	exon4	c.G806A	p.R269Q	.	.	61	11	79	0	.	91
BHLHE40	8553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	5025203	5025203	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BHLHE40	NM_003670	exon5	c.C1065T	p.L355L	.	.	104	40	158	1	.	91
BST1	683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15709230	15709230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BST1	NM_004334	exon3	c.G412A	p.A138T	.	.	115	44	140	0	.	90
CCDC74B	91409	bcgsc.ca	37	2	130897218	130897218	+	Silent	SNP	T	T	C	rs13006246	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CCDC74B	NM_207310	exon8	c.A1053G	p.A351A	.	.	273	8	359	6	T|0.826;C|0.174	90
CCHCR1	54535	bcgsc.ca	37	6	31116246	31116246	+	Missense_Mutation	SNP	G	G	A	rs130068	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CCHCR1	NM_001105564	exon10	c.C1516T	p.R506W	.	.	273	8	264	1	G|0.568;A|0.432	91
CDC45	8318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19481906	19481906	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDC45	NM_001178011	exon5	c.404+1G>T	.	.	.	139	46	199	0	.	227
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68842624	68842624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDH1	NM_004360	exon5	c.A560G	p.K187R	.	.	54	23	76	0	.	3377
CDK3	1018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73998495	73998495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDK3	NM_001258	exon5	c.A482G	p.H161R	.	.	62	21	82	0	.	521
CLCN7	1186	bcgsc.ca	37	16	1503879	1503879	+	Silent	SNP	T	T	A	rs2235579	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CLCN7	NM_001287	exon14	c.A1170T	p.A390A	.	.	145	6	248	1	T|0.472;A|0.528	92
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190126207	190126207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CLDN16	NM_006580	exon4	c.G697A	p.G233S	.	.	110	38	136	0	.	227
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu	37	22	19211532	19211532	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CLTCL1	NM_001835	exon14	c.2174delC	p.P725fs	.	.	176	11	267	0	.	230
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32757737	32757737	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CNOT10	NM_001256742	exon6	c.A774G	p.K258K	.	.	126	56	173	0	.	91
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CSGALNACT2	NM_018590	exon5	c.G1086T	p.L362F	.	.	153	4	194	0	.	69
CSHL1	1444	bcgsc.ca	37	17	61987576	61987576	+	Silent	SNP	G	G	A	rs2246207	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CSHL1	NM_022579	exon4	c.C417T	p.S139S	.	.	396	10	452	5	G|0.566;A|0.434	90
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80801440	80801440	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CTNNA2	NM_004389	exon13	c.1893+1G>T	.	.	.	128	43	148	0	.	368
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	A	rs121913409	bycluster	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	CTNNB1,NS,carcinoma,+1	CTNNB1	NM_001098209	exon3	c.C134A	p.S45Y	.	.	118	57	225	0	.	24361
CTTN	2017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70269063	70269063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CTTN	NM_005231	exon12	c.G919A	p.G307S	.	.	350	137	413	0	.	227
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46620284	46620284	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CYP39A1	NM_016593	exon1	c.G36A	p.L12L	.	.	125	36	97	0	.	91
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24758744	24758744	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DFNA5	NM_001127453	exon4	c.G498A	p.Q166Q	.	.	178	26	145	0	.	91
DHX16	8449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30627293	30627293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DHX16	NM_003587	exon12	c.A1963G	p.M655V	.	.	182	44	130	2	.	228
DHX37	57647	bcgsc.ca	37	12	125438712	125438712	+	Silent	SNP	C	C	A	rs11829165	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DHX37	NM_032656	exon19	c.G2499T	p.R833R	.	.	120	6	116	0	C|0.852;A|0.148	227
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223177045	223177045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DISP1	NM_032890	exon10	c.A2306G	p.K769R	.	.	198	114	181	0	.	68
DLG4	1742	broad.mit.edu	37	17	7106786	7106786	+	Silent	SNP	C	C	T	rs201426589		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DLG4	NM_001365	exon8	c.G591A	p.P197P	.	.	74	3	99	1	C|0.999;T|0.000	24
DNAJC6	9829	broad.mit.edu	37	1	65775579	65775579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DNAJC6	NM_001256864	exon1	c.G151A	p.A51T	.	.	55	4	110	0	.	272
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	116534805	116534805	+	Missense_Mutation	SNP	G	G	A	rs150929011		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	DPP10,NS,carcinoma,0	DPP10	NM_001178034	exon14	c.G1255A	p.V419M	.	.	185	10	205	0	G|1.000;A|0.000	142
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41416175	41416175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DSCAM	NM_001271534	exon31	c.C5213A	p.A1738D	.	.	113	45	141	0	.	101
DSPP	1834	ucsc.edu	37	4	88537306	88537306	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DSPP	NM_014208	exon5	c.T3492C	p.D1164D	.	.	487	159	633	4	.	90
DUS3L	56931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5789643	5789643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DUS3L	NM_020175	exon3	c.G475T	p.G159C	.	.	111	60	110	1	.	90
ECD	11319	bcgsc.ca	37	10	74923562	74923562	+	Missense_Mutation	SNP	C	C	T	rs3812619	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ECD	NM_001135752	exon2	c.G134A	p.R45Q	.	.	123	6	148	1	C|0.811;T|0.189	91
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233345176	233345176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ECEL1	NM_004826	exon17	c.A2161G	p.I721V	.	.	112	47	138	0	.	90
ELAC1	55520	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48510804	48510804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ELAC1	NM_018696	exon3	c.C496A	p.L166I	.	.	95	48	152	1	.	90
ELMO3	79767	bcgsc.ca	37	16	67233266	67233266	+	Missense_Mutation	SNP	A	A	C	rs12923138	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ELMO3	NM_024712	exon1	c.A196C	p.K66Q	.	.	106	5	163	1	A|0.448;C|0.552	90
ESPNL	339768	bcgsc.ca	37	2	239016539	239016539	+	Silent	SNP	C	C	G	rs935415	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ESPNL	NM_194312	exon4	c.C780G	p.L260L	.	.	368	10	511	6	C|0.271;G|0.729	69
F5	2153	ucsc.edu	37	1	169510650	169510650	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	F5	NM_000130	exon13	c.C3678T	p.L1226L	.	.	547	5	527	4	.	157
FAT4	79633	hgsc.bcm.edu;broad.mit.edu	37	4	126372517	126372517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FAT4	NM_024582	exon9	c.A10346T	p.E3449V	.	.	93	4	134	0	.	108
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126400895	126400895	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FAT4	NM_024582	exon14	c.12474-1G>A	.	.	.	43	14	58	0	.	108
FBN3	84467	broad.mit.edu;bcgsc.ca	37	19	8138130	8138130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FBN3	NM_032447	exon61	c.G7754A	p.R2585H	.	.	282	19	455	2	.	100
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	97360146	97360146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FER1L5	NM_001113382	exon33	c.G3767A	p.G1256E	.	.	83	28	103	0	.	23
FGD3	89846	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95738644	95738644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FGD3	NM_001083536	exon3	c.C106T	p.P36S	.	.	117	40	163	1	.	228
FLII	2314	bcgsc.ca	37	17	18148485	18148485	+	Silent	SNP	G	G	A	rs7498	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FLII	NM_002018	exon30	c.C3777T	p.H1259H	.	.	148	6	230	3	G|0.728;A|0.272	91
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39264849	39264849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FREM2	NM_207361	exon1	c.G3368A	p.G1123D	.	.	51	6	64	0	.	100
GAS2L2	246176	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	34079749	34079749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GAS2L2	NM_139285	exon1	c.T121A	p.W41R	.	.	183	15	215	1	.	227
GCAT	23464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38212648	38212648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GCAT	NM_001171690	exon9	c.G1261A	p.V421M	.	.	126	44	127	0	.	90
GNL3L	54552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54566597	54566597	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GNL3L	NM_001184819	exon4	c.C111A	p.T37T	.	.	288	99	342	0	.	131
GPR1	2825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207040977	207040977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GPR1	NM_001098199	exon3	c.G995A	p.C332Y	.	.	110	45	123	0	.	90
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14548392	14548392	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GRIP2	.	.	.	.	.	.	153	70	198	1	.	69
GTF2IRD2P1	401375	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72658191	72658191	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	.	.	.	.	.	.	515	151	233	0	.	.
HFE2	148738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145416462	145416462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	HFE2	NM_213653	exon4	c.C807A	p.N269K	.	.	132	38	148	0	.	91
HIRIP3	8479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30005727	30005728	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	HIRIP3	NM_003609	exon4	c.739_740insA	p.E247fs	.	.	54	21	70	0	.	90
IL17RA	23765	broad.mit.edu	37	22	17589323	17589323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	IL17RA	NM_014339	exon13	c.C1214T	p.A405V	.	.	93	3	106	0	.	92
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44415602	44415602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	IPO13	NM_014652	exon2	c.G598A	p.A200T	.	.	51	21	58	0	.	226
ITGA11	22801	broad.mit.edu	37	15	68628045	68628045	+	Missense_Mutation	SNP	C	C	T	rs201855561		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ITGA11	NM_001004439	exon12	c.G1415A	p.R472Q	.	.	149	5	205	2	C|0.999;T|0.001	538
ITIH4	3700	bcgsc.ca	37	3	52861211	52861211	+	Missense_Mutation	SNP	A	A	T	rs13072536	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ITIH4	NM_001166449	exon3	c.T254A	p.I85N	.	.	144	5	197	2	A|0.744;T|0.256	46
KCNA7	3743	broad.mit.edu	37	19	49573369	49573369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KCNA7	NM_031886	exon2	c.C1322A	p.P441Q	.	.	148	5	194	0	.	90
KCNH8	131096	broad.mit.edu	37	3	19295154	19295154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KCNH8	NM_144633	exon2	c.T85C	p.F29L	.	.	57	4	66	0	.	524
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137734001	137734001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KDM3B	NM_016604	exon10	c.A2966G	p.Y989C	.	.	228	76	204	0	.	542
KIAA0100	9703	broad.mit.edu	37	17	26962490	26962490	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KIAA0100	NM_014680	exon16	c.A2115G	p.A705A	.	.	266	7	325	0	.	93
KIAA0947	23379	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	5463008	5463008	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KIAA0947	NM_015325	exon13	c.T3561A	p.Y1187X	.	.	109	30	123	1	.	48
KIAA1217	56243	bcgsc.ca	37	10	24813282	24813282	+	Silent	SNP	G	G	C	rs2297329	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KIAA1217	NM_019590	exon13	c.G2487C	p.T829T	.	.	133	5	176	2	G|0.889;C|0.111	98
KRT39	390792	broad.mit.edu;mdanderson.org	37	17	39116562	39116562	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_213656	exon6	c.C1188T	p.Y396Y	.	.	34	12	51	0	.	.
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153135689	153135689	+	Silent	SNP	C	C	A	rs201381558	alternate_allele	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	L1CAM	NM_000425	exon8	c.G813T	p.T271T	.	.	105	29	133	0	.	138
LAIR1	3903	broad.mit.edu	37	19	54871676	54871676	+	Missense_Mutation	SNP	G	G	C	rs190462445		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	LAIR1	NM_002287	exon4	c.C368G	p.T123S	.	.	97	3	128	0	G|0.988;C|0.012	94
LDHAL6B	92483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59499173	59499173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	LDHAL6B	NM_033195	exon1	c.C34A	p.Q12K	.	.	104	38	121	0	.	226
LOC388152	0	broad.mit.edu	37	15	84868607	84868607	+	RNA	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	.	.	.	.	.	.	12	3	13	0	.	.
LOC728554	0	broad.mit.edu;bcgsc.ca	37	5	177309375	177309375	+	RNA	SNP	C	C	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	.	.	.	.	.	.	1064	288	924	0	.	.
LRR1	122769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50074175	50074175	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	LRR1	NM_152329	exon3	c.T340A	p.C114S	.	.	63	17	64	0	.	227
LTK	4058	hgsc.bcm.edu	37	15	41796253	41796253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	LTK	NM_002344	exon20	c.C2536A	p.P846T	.	.	82	4	100	0	.	1377
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39920643	39920643	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MACF1	NM_012090	exon86	c.T14772A	p.A4924A	.	.	92	6	135	0	.	165
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149671633	149671633	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MAMLD1	NM_005491	exon5	c.G2130C	p.G710G	.	.	355	130	412	0	.	130
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	44060964	44060964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MAPT	NM_001123066	exon6	c.T794A	p.I265N	.	.	77	26	94	0	.	91
MDC1	9656	broad.mit.edu	37	6	30675754	30675754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MDC1	NM_014641	exon8	c.G2602A	p.D868N	.	.	156	5	139	0	.	273
MDH1	4190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	63832431	63832431	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MDH1	NM_001199111	exon7	c.C747T	p.G249G	.	.	119	50	123	0	.	537
METTL21C	196541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103343267	103343267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	METTL21C	NM_001010977	exon2	c.C178A	p.P60T	.	.	119	51	192	0	.	90
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	41988802	41988802	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MGA	NM_001080541	exon3	c.A1594T	p.K532X	.	.	79	8	65	0	.	522
MLLT6	4302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36876674	36876674	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MLLT6	NM_005937	exon15	c.G2205A	p.R735R	.	.	112	41	109	0	.	659
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113509934	113509934	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MUSK	NM_001166280	exon8	c.C797G	p.S266C	.	.	85	32	84	0	.	1379
MYH11	4629	broad.mit.edu;bcgsc.ca	37	16	15853534	15853534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MYH11	NM_001040114	exon13	c.C1321T	p.R441C	.	.	182	8	201	1	.	666
NF1	4763	broad.mit.edu;bcgsc.ca	37	17	29665760	29665760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	NF1	NM_001042492	exon46	c.C6858A	p.N2286K	.	.	374	12	454	0	.	3353
NOP9	161424	hgsc.bcm.edu	37	14	24769849	24769849	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_174913	exon2	c.A483G	p.A161A	.	.	72	3	126	0	.	.
NR1H2	7376	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	50881836	50881836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	NR1H2	NM_007121	exon6	c.C530A	p.S177X	.	.	65	27	91	0	.	186
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88423567	88423567	+	Silent	SNP	G	G	A	rs79813886		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	NTRK3	NM_001012338	exon19	c.C2268T	p.F756F	.	.	77	37	120	0	G|0.999;A|0.001	3538
OAS1	4938	bcgsc.ca	37	12	113357237	113357237	+	Missense_Mutation	SNP	G	G	C	rs1051042	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OAS1	NM_016816	exon6	c.G1082C	p.R361T	.	.	176	6	259	1	G|0.260;C|0.739	70
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228526698	228526698	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OBSCN	NM_001271223	exon80	c.T20100C	p.N6700N	.	.	278	86	259	0	.	403
OR1F1	4992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3254987	3254987	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR1F1	NM_012360	exon1	c.G741A	p.V247V	.	.	155	44	217	0	.	68
OR2T6	254879	ucsc.edu;bcgsc.ca	37	1	248551236	248551236	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR2T6	NM_001005471	exon1	c.G327T	p.G109G	.	.	154	53	114	2	.	71
OR51F1	256892	bcgsc.ca	37	11	4790857	4790857	+	Silent	SNP	A	A	G	rs11033797	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR51F1	NM_001004752	exon1	c.T291C	p.Y97Y	.	.	137	5	193	1	A|0.713;G|0.287	70
OR5M8	219484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56258001	56258001	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR5M8	NM_001005282	exon1	c.T846A	p.P282P	.	.	46	15	45	0	.	68
OTX1	5013	bcgsc.ca	37	2	63283178	63283178	+	Silent	SNP	C	C	G	rs17850223	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OTX1	NM_014562	exon5	c.C792G	p.L264L	.	.	179	7	254	2	C|0.884;G|0.116	70
OTX1	5013	ucsc.edu;bcgsc.ca	37	2	63282703	63282703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OTX1	NM_014562	exon5	c.G317T	p.R106L	.	.	229	89	308	4	.	70
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55591092	55591092	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PCDH15	NM_001142763	exon31	c.T4200C	p.V1400V	.	.	107	40	168	0	.	193
PIBF1	10464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73468073	73468073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PIBF1	NM_006346	exon11	c.C1474A	p.Q492K	.	.	115	35	148	0	.	136
PLCL2	23228	bcgsc.ca	37	3	17131374	17131374	+	Silent	SNP	C	C	T	rs149144281	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PLCL2	NM_015184	exon6	c.C2976T	p.P992P	.	.	164	6	139	0	C|0.994;T|0.006	229
PLEKHM2	23207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16051919	16051919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PLEKHM2	NM_015164	exon8	c.G820A	p.E274K	.	.	127	49	158	1	.	23
PNLIPRP1	5407	broad.mit.edu	37	10	118351933	118351933	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PNLIPRP1	NM_006229	exon4	c.C210T	p.L70L	.	.	73	3	90	0	.	154
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74981292	74981292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	POC5	NM_001099271	exon10	c.A1147C	p.N383H	.	.	87	50	67	0	.	45
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	54763977	54763977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PPAP2A	NM_176895	exon3	c.A214G	p.I72V	.	.	77	21	62	0	.	92
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42957352	42957352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PPP2R5D	NM_180976	exon2	c.C31T	p.P11S	.	.	69	20	87	0	.	1082
PRG4	10216	hgsc.bcm.edu	37	1	186276981	186276981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PRG4	NM_005807	exon7	c.A2130G	p.K710K	.	.	117	5	110	0	.	91
PTCH1	5727	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98231224	98231224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PTCH1	NM_000264	exon14	c.G2059T	p.V687L	.	.	138	48	158	1	.	3532
RAB43	339122	bcgsc.ca	37	3	128840321	128840321	+	Silent	SNP	C	C	T	rs76233276	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RAB43	NM_001204886	exon2	c.G12A	p.P4P	.	.	63	4	117	0	C|0.954;T|0.046	369
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38912649	38912649	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RASGRP4	NM_001146206	exon2	c.C168T	p.C56C	.	.	81	34	81	0	.	660
RBP4	5950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	95360550	95360550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RBP4	NM_006744	exon3	c.C122T	p.T41I	.	.	208	32	311	0	.	90
RGL4	266747	bcgsc.ca	37	22	24035970	24035970	+	Missense_Mutation	SNP	C	C	T	rs2070446	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RGL4	NM_153615	exon4	c.C721T	p.H241Y	.	.	255	9	343	4	C|0.220;N|0.000	228
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	54792096	54792096	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RGS20	NM_170587	exon2	c.G444A	p.R148R	.	.	142	81	131	0	.	227
RIBC2	26150	bcgsc.ca	37	22	45826880	45826880	+	Missense_Mutation	SNP	G	G	A	rs2072770	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RIBC2	.	.	.	.	.	.	161	11	192	1	G|0.342;A|0.658	90
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55540553	55540553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RP1	NM_006269	exon4	c.G4111C	p.D1371H	.	.	63	35	67	0	.	102
RSPO1	284654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38082337	38082337	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RSPO1	NM_001242910	exon4	c.G105A	p.E35E	.	.	199	80	268	2	.	22
RTKN2	219790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64022532	64022532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RTKN2	NM_145307	exon2	c.G109A	p.G37R	.	.	44	21	78	1	.	68
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4153733	4153733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SDK1	NM_152744	exon25	c.G3650A	p.R1217H	.	.	188	42	165	0	.	138
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146275926	146275926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SHPRH	NM_173082	exon2	c.A533T	p.E178V	.	.	35	26	50	0	.	92
SIAH1	6477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	48396330	48396330	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SIAH1	NM_001006610	exon2	c.C103T	p.Q35X	.	.	186	71	237	0	.	415
SIK1	150094	bcgsc.ca	37	21	44838279	44838279	+	Silent	SNP	C	C	T	rs113434279	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SIK1	NM_173354	exon12	c.G1605A	p.P535P	.	.	51	4	70	0	C|0.993;T|0.007	346
SLC14A2	8170	broad.mit.edu	37	18	43253729	43253729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SLC14A2	NM_001242692	exon19	c.G2459A	p.G820E	.	.	142	5	169	1	.	93
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2294745	2294745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SNX8	NM_013321	exon11	c.C1344G	p.H448Q	.	.	189	34	152	0	.	290
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38369604	38369604	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SOX10	NM_006941	exon4	c.G1299A	p.R433R	.	.	38	14	40	0	.	650
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172643141	172643141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SPATA16	NM_031955	exon7	c.T1223A	p.F408Y	.	.	93	33	103	0	.	94
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65252575	65252575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SPTB	NM_001024858	exon16	c.A3656G	p.N1219S	.	.	55	25	67	0	.	100
STAB2	55576	broad.mit.edu;mdanderson.org	37	12	104136328	104136328	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	STAB2	NM_017564	exon56	c.T6027A	p.C2009X	.	.	195	13	249	1	.	104
STEAP4	79689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87912273	87912273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	STEAP4	NM_001205315	exon4	c.G667A	p.V223I	.	.	131	63	104	0	.	90
TENM2	57451	broad.mit.edu;bcgsc.ca	37	5	167674450	167674450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_001122679	exon27	c.G6479A	p.R2160Q	.	.	265	9	263	0	.	.
TMEM203	94107	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140099480	140099491	+	In_Frame_Del	DEL	CATGAGCAGCTG	CATGAGCAGCTG	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	CATGAGCAGCTG	CATGAGCAGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TMEM203	NM_053045	exon1	c.376_387del	p.126_129del	.	.	61	16	104	0	.	22
TMEM247	388946	hgsc.bcm.edu	37	2	46707883	46707884	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_001145051	exon2	c.457_458insGG	p.Q153fs	.	.	129	13	189	0	.	.
TMEM247	388946	hgsc.bcm.edu;bcgsc.ca	37	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_001145051	exon2	c.A461C	p.E154A	.	.	121	9	173	0	.	.
TMPRSS11E	28983	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69343131	69343131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TMPRSS11E	NM_014058	exon8	c.T752C	p.I251T	.	.	179	80	187	1	.	70
TSSC1	7260	broad.mit.edu;bcgsc.ca	37	2	3217959	3217959	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TSSC1	NM_003310	exon5	c.C477T	p.I159I	.	.	108	43	99	2	.	90
UBXN1	51035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62445539	62445539	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	UBXN1	NM_015853	exon5	c.342delA	p.E114fs	.	.	66	28	92	0	.	90
UNC13A	23025	broad.mit.edu	37	19	17799279	17799279	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	UNC13A	.	.	.	.	.	.	38	3	69	1	.	25
VSIG10L	147645	broad.mit.edu	37	19	51837171	51837171	+	Silent	SNP	A	A	G	rs7255306	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_001163922	exon9	c.T2448C	p.P816P	.	.	85	5	108	0	A|0.563;G|0.437	.
VSX2	338917	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	74706315	74706315	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	VSX2	NM_182894	exon1	c.G51A	p.V17V	.	.	76	8	101	1	.	69
WDR26	80232	broad.mit.edu	37	1	224621472	224621472	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	WDR26	NM_001115113	exon1	c.C336T	p.S112S	.	.	8	3	15	0	.	90
WDR81	124997	broad.mit.edu;bcgsc.ca	37	17	1630992	1630992	+	Silent	SNP	G	G	A	rs9912287	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	WDR81	NM_001163809	exon1	c.G2739A	p.L913L	.	.	133	7	159	0	G|0.790;A|0.209	91
XIRP1	165904	broad.mit.edu	37	3	39230859	39230859	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	XIRP1	NM_001198621	exon2	c.A78C	p.P26P	.	.	25	7	26	5	.	158
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112926896	112926896	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	YTHDC2	NM_022828	exon27	c.C3984T	p.S1328S	.	.	147	38	158	0	.	92
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100344318	100344318	+	RNA	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ZAN	.	.	.	.	.	.	132	73	95	0	.	142
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44676265	44676265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_015919	exon4	c.G40T	p.A14S	.	.	130	52	172	0	.	.
DPY19L2	283417	bcgsc.ca	37	12	63964599	63964600	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	.	.	.	p.I647V	.	.	.	.	.	.	.	
PRAMEF2	65122	bcgsc.ca	37	1	12921332	12921333	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	.	.	.	p.C375H	.	.	.	.	.	.	.	
