Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	94476865	94476865	+	Missense_Mutation	SNP	A	A	G	rs61750575		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ABCA4	NM_000350	exon39	c.T5537C	p.I1846T	.	.	317	17	377	0	.	162
ADAM12	8038	bcgsc.ca	37	10	127789791	127789791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ADAM12	NM_021641	exon9	c.T770A	p.I257N	.	.	171	6	231	0	.	716
ADAM21	8747	broad.mit.edu;ucsc.edu	37	14	70924853	70924853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ADAM21	NM_003813	exon2	c.G637A	p.V213I	.	.	57	9	71	1	.	92
ADAM21P1	145241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70713741	70713741	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	157	17	181	0	.	.
AMY2B	280	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	104120169	104120169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	AMY2B	NM_020978	exon10	c.A1159G	p.I387V	.	.	386	137	515	2	.	90
ASPM	259266	ucsc.edu	37	1	197060084	197060084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ASPM	NM_018136	exon23	c.C9532A	p.L3178M	.	.	34	4	40	0	.	615
BEST4	266675	ucsc.edu	37	1	45252159	45252159	+	Missense_Mutation	SNP	T	T	C	rs41306591		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	BEST4	NM_153274	exon3	c.A457G	p.T153A	.	.	99	32	19	1	T|0.997;C|0.003	91
BRCA2	675	bcgsc.ca	37	13	32906766	32906766	+	Missense_Mutation	SNP	C	C	T	rs41293475	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	BRCA2	NM_000059	exon10	c.C1151T	p.S384F	.	.	24	8	36	1	C|0.998;T|0.002	3153
C16orf71	146562	bcgsc.ca	37	16	4797457	4797457	+	Missense_Mutation	SNP	C	C	T	rs17853375	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	C16orf71	NM_139170	exon9	c.C1394T	p.P465L	.	.	169	7	250	2	C|0.555;G|0.000;T|0.445	68
C19orf71	100128569	broad.mit.edu;bcgsc.ca	37	19	3543397	3543397	+	Missense_Mutation	SNP	C	C	T	rs12608919	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001135580	exon2	c.C248T	p.P83L	.	.	180	11	180	2	C|0.612;T|0.388	.
C1QTNF6	114904	bcgsc.ca	37	22	37581485	37581485	+	Missense_Mutation	SNP	C	C	A	rs229527	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	C1QTNF6	NM_182486	exon2	c.G62T	p.G21V	.	.	57	4	57	0	T|0.108;G|0.123	90
CCDC159	126075	bcgsc.ca	37	19	11461486	11461486	+	Missense_Mutation	SNP	G	G	T	rs36097565	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CCDC159	NM_001080503	exon5	c.G229T	p.V77L	.	.	289	8	351	2	G|0.929;T|0.071	23
CDSN	1041	ucsc.edu	37	6	31084170	31084170	+	Missense_Mutation	SNP	A	A	C	rs1042127	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CDSN	NM_001264	exon2	c.T1222G	p.S408A	.	.	41	4	58	1	A|0.846;C|0.154	92
CEACAM20	125931	bcgsc.ca	37	19	45028169	45028169	+	Missense_Mutation	SNP	C	C	T	rs7260180	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CEACAM20	NM_001102600	exon3	c.G322A	p.V108I	.	.	545	18	555	7	C|0.629;T|0.371	67
CHST2	9435	broad.mit.edu;bcgsc.ca	37	3	142840928	142840928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CHST2	NM_004267	exon2	c.C1270T	p.R424W	.	.	148	10	145	1	.	93
CRIPAK	285464	bcgsc.ca	37	4	1389125	1389125	+	Missense_Mutation	SNP	T	T	C	rs146490783	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CRIPAK	NM_175918	exon1	c.T826C	p.C276R	.	.	224	43	101	5	T|0.991;C|0.009	90
CSAG1	158511	bcgsc.ca	37	X	151908844	151908844	+	Missense_Mutation	SNP	A	A	T	rs36103895	alternate_allele	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CSAG1	NM_153478	exon4	c.A83T	p.Y28F	.	.	403	12	490	3	.	131
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	.	.	66	19	81	0	.	24361
CUX2	23316	bcgsc.ca	37	12	111747963	111747963	+	Silent	SNP	C	C	T	rs3742007	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CUX2	NM_015267	exon15	c.C1377T	p.P459P	.	.	62	5	69	0	C|0.663;T|0.337	140
DDX11L10	100287029	bcgsc.ca	37	16	64458	64458	+	Missense_Mutation	SNP	G	G	A	rs76691031		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	142	7	203	2	A|1.000;|0.000	.
DEFA5	1670	ucsc.edu;bcgsc.ca	37	8	6913031	6913031	+	Silent	SNP	G	G	A	rs2272719	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	DEFA5	NM_021010	exon2	c.C207T	p.T69T	.	.	77	7	87	0	G|0.682;A|0.318	90
DHX16	8449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30624804	30624804	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	DHX16	NM_003587	exon13	c.T2073C	p.D691D	.	.	111	37	135	1	.	228
DPPA3	359787	bcgsc.ca	37	12	7867847	7867847	+	Missense_Mutation	SNP	G	G	C	rs41449345	bycluster;byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	DPPA3	NM_199286	exon2	c.G151C	p.E51Q	.	.	96	6	132	1	G|0.700;C|0.300	226
DYNLRB2	83657	bcgsc.ca	37	16	80583497	80583497	+	Silent	SNP	C	C	T	rs11866734	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	DYNLRB2	NM_130897	exon3	c.C196T	p.L66L	.	.	92	8	101	0	C|0.779;T|0.221	90
EPHA10	284656	bcgsc.ca	37	1	38185647	38185647	+	Silent	SNP	G	G	A	rs2170809	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	EPHA10	NM_001099439	exon14	c.C2496T	p.F832F	.	.	455	15	598	5	G|0.922;A|0.078	1246
EPHA10	284656	bcgsc.ca	37	1	38185723	38185723	+	Missense_Mutation	SNP	C	C	T	rs6670599	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	EPHA10	NM_001099439	exon14	c.G2420A	p.R807Q	.	.	253	8	303	3	C|0.937;T|0.063	1246
EPHB4	2050	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	100402889	100402889	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	EPHB4	NM_004444	exon16	c.T2733A	p.S911S	.	.	193	13	222	1	.	1446
ESPNP	284729	ucsc.edu	37	1	17034167	17034167	+	RNA	SNP	G	G	A	rs2988287	by1000genomes	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	74	10	27	1	G|0.931;A|0.069	.
FAM129C	199786	hgsc.bcm.edu;bcgsc.ca	37	19	17664297	17664297	+	Silent	SNP	A	A	G	rs199532721	alternate_allele	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	FAM129C	NM_173544	exon16	c.A2019G	p.A673A	.	.	108	5	140	0	A|1.000;C|0.000	90
FAM149A	25854	bcgsc.ca	37	4	187078866	187078866	+	Missense_Mutation	SNP	C	C	T	rs2276922	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	FAM149A	NM_001006655	exon7	c.C722T	p.P241L	.	.	67	5	103	1	C|0.713;T|0.287	90
FAM157A	728262	bcgsc.ca	37	3	197880133	197880133	+	Missense_Mutation	SNP	A	A	G	rs3843727		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001145248	exon2	c.A212G	p.Q71R	.	.	214	9	279	5	.	.
FLG	2312	bcgsc.ca	37	1	152285930	152285930	+	Missense_Mutation	SNP	G	G	A	rs11584340	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	FLG	NM_002016	exon3	c.C1432T	p.P478S	.	.	451	12	593	3	G|0.785;A|0.215	106
FLG	2312	bcgsc.ca	37	1	152286002	152286002	+	Missense_Mutation	SNP	T	T	C	rs2011331	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	FLG	NM_002016	exon3	c.A1360G	p.T454A	.	.	423	12	555	1	T|0.667;C|0.333	106
FUK	197258	bcgsc.ca	37	16	70506907	70506907	+	Silent	SNP	T	T	C	rs7192865	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	FUK	NM_145059	exon15	c.T1428C	p.P476P	.	.	157	8	173	1	T|0.402;C|0.598	91
GOLGA4	2803	ucsc.edu	37	3	37368642	37368642	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	GOLGA4	NM_001172713	exon15	c.A5331G	p.V1777V	.	.	164	4	216	0	.	93
GP6	51206	hgsc.bcm.edu	37	19	55525497	55525497	+	Missense_Mutation	SNP	A	A	G	rs1671150	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	GP6	NM_001083899	exon8	c.T1816C	p.F606L	.	.	6	6	0	0	A|0.233;G|0.767	92
GPIHBP1	338328	bcgsc.ca	37	8	144295154	144295154	+	Silent	SNP	C	C	T	rs61747644	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	GPIHBP1	NM_178172	exon1	c.C12T	p.L4L	.	.	150	8	205	1	C|0.860;T|0.140	68
GRK1	6011	bcgsc.ca	37	13	114322289	114322289	+	Silent	SNP	A	A	G	rs9796035	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	GRK1	NM_002929	exon1	c.A588G	p.L196L	.	.	213	10	290	1	A|0.296;G|0.704	614
GSTP1	2950	bcgsc.ca	37	11	67352689	67352689	+	Missense_Mutation	SNP	A	A	G	rs1695	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	GSTP1	NM_000852	exon5	c.A313G	p.I105V	.	.	92	6	85	0	A|0.689;G|0.311	91
HDHD1	8226	bcgsc.ca	37	X	6995417	6995417	+	Silent	SNP	C	C	T	rs2379207	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HDHD1	NM_001135565	exon4	c.G423A	p.A141A	.	.	96	6	129	0	C|0.748;0|0.031	130
HEATR4	399671	bcgsc.ca	37	14	73961982	73961982	+	Missense_Mutation	SNP	C	C	T	rs76429074	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HEATR4	NM_203309	exon15	c.G2735A	p.G912E	.	.	122	6	131	1	C|0.982;T|0.018	91
HK3	3101	bcgsc.ca	37	5	176314639	176314639	+	Silent	SNP	G	G	A	rs6875296	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HK3	NM_002115	exon11	c.C1413T	p.A471A	.	.	207	7	258	3	G|0.724;A|0.276	294
HLA-DQA2	3118	bcgsc.ca	37	6	32713030	32713030	+	Silent	SNP	T	T	C	rs3208181	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HLA-DQA2	NM_020056	exon2	c.T177C	p.Y59Y	.	.	181	7	239	2	T|0.413;C|0.587	90
HOXB1	3211	hgsc.bcm.edu;ucsc.edu	37	17	46608203	46608203	+	Missense_Mutation	SNP	A	A	G	rs12950537	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HOXB1	NM_002144	exon1	c.T64C	p.Y22H	.	.	50	13	51	0	A|0.965;G|0.035	515
HRNR	388697	bcgsc.ca	37	1	152192395	152192395	+	Silent	SNP	G	G	A	rs61814946	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HRNR	NM_001009931	exon3	c.C1710T	p.S570S	.	.	499	16	636	3	G|0.895;A|0.105	93
HSD17B3	3293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	99007649	99007649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HSD17B3	NM_000197	exon8	c.A584G	p.Y195C	.	.	102	6	139	0	.	90
IL1R1	3554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102792895	102792895	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	IL1R1	NM_000877	exon11	c.C1386G	p.S462R	.	.	97	28	123	0	.	523
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55260056	55260067	+	In_Frame_Del	DEL	GACAAAATACAC	GACAAAATACAC	-	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	GACAAAATACAC	GACAAAATACAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	IL6ST	NM_175767	exon6	c.565_576del	p.189_192del	.	.	122	13	211	0	.	290
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	6083468	6083468	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	JAKMIP1	NM_001099433	exon6	c.A969G	p.R323R	.	.	68	5	94	0	.	292
KALRN	8997	bcgsc.ca	37	3	124418846	124418846	+	Silent	SNP	C	C	T	rs2289427	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KALRN	NM_001024660	exon56	c.C7962T	p.S2654S	.	.	130	7	148	0	C|0.844;T|0.156	738
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44176930	44176930	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KCTD8	NM_198353	exon2	c.G1299A	p.K433K	.	.	53	6	57	0	.	92
KIAA1751	85452	bcgsc.ca	37	1	1896440	1896440	+	Silent	SNP	G	G	A	rs16824585	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KIAA1751	NM_001080484	exon13	c.C1462T	p.L488L	.	.	162	6	208	0	G|0.764;A|0.236	69
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	241697828	241697828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KIF1A	NM_001244008	exon26	c.C2531A	p.T844N	.	.	206	15	262	0	.	91
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	10541390	10541390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001199805	exon7	c.G20A	p.R7Q	.	.	41	10	67	0	.	.
KRTAP10-10	353333	ucsc.edu	37	21	46057625	46057625	+	Silent	SNP	T	T	C	rs55677560	bycluster	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KRTAP10-10	NM_181688	exon1	c.T291C	p.P97P	.	.	139	30	192	1	C|1.000;|0.000	90
LACTB	114294	hgsc.bcm.edu	37	15	63414119	63414119	+	Missense_Mutation	SNP	G	G	A	rs139879323		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	LACTB	NM_171846	exon1	c.G49A	p.G17S	.	.	16	6	4	0	G|0.979;A|0.021	90
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44892793	44892793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	LDOC1L	NM_032287	exon2	c.G644T	p.G215V	.	.	47	14	53	0	.	69
LGALS17A	0	broad.mit.edu	37	19	40174236	40174236	+	RNA	SNP	G	G	A	rs7258833	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	130	5	146	0	G|0.364;A|0.636	.
LINC00085	147650	broad.mit.edu	37	19	52196648	52196648	+	RNA	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	50	5	61	0	.	.
LIPT2	387787	hgsc.bcm.edu	37	11	74204727	74204727	+	Silent	SNP	A	A	G	rs4944895		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	LIPT2	NM_001144869	exon1	c.T22C	p.L8L	.	.	7	7	0	0	A|0.071;G|0.929	68
LOC96610	0	bcgsc.ca	37	22	22661626	22661626	+	RNA	SNP	T	T	C	rs2329974	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	209	9	255	4	T|0.575;C|0.425	.
LTF	4057	bcgsc.ca	37	3	46484964	46484964	+	Silent	SNP	G	G	A	rs1042073	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	LTF	NM_002343	exon13	c.C1623T	p.N541N	.	.	180	6	230	2	G|0.597;A|0.403	703
MCM3AP	8888	bcgsc.ca	37	21	47676711	47676711	+	Silent	SNP	G	G	A	rs2839173	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MCM3AP	NM_003906	exon17	c.C3924T	p.S1308S	.	.	105	5	125	1	G|0.615;A|0.385	291
MED26	9441	mdanderson.org	37	19	16688338	16688338	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MED26	NM_004831	exon3	c.C303T	p.T101T	.	.	9	2	13	0	.	70
MLL3	58508	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151927100	151927100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MLL3	NM_170606	exon18	c.G2884T	p.V962F	.	.	1095	50	1363	0	.	1398
MMS22L	253714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	97711252	97711252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MMS22L	NM_198468	exon9	c.A901G	p.I301V	.	.	31	6	47	0	.	92
MUC4	4585	bcgsc.ca	37	3	195513126	195513126	+	Silent	SNP	G	G	A	rs62282488	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MUC4	NM_018406	exon2	c.C5325T	p.T1775T	.	.	347	10	429	3	G|0.897;A|0.103	90
MVD	4597	bcgsc.ca	37	16	88724347	88724347	+	Silent	SNP	G	G	T	rs2279258	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MVD	NM_002461	exon3	c.C232A	p.R78R	.	.	114	6	136	1	G|0.443;T|0.557	90
MYH6	4624	bcgsc.ca	37	14	23855320	23855320	+	Silent	SNP	G	G	A	rs382872	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MYH6	NM_002471	exon34	c.C4980T	p.D1660D	.	.	211	8	249	3	G|0.920;A|0.080	94
MYO7A	4647	broad.mit.edu;bcgsc.ca	37	11	76873963	76873963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MYO7A	NM_001127179	exon14	c.C1619T	p.P540L	.	.	160	6	155	0	.	138
MZF1	7593	hgsc.bcm.edu;broad.mit.edu	37	19	59074590	59074612	+	Frame_Shift_Del	DEL	CCCCGCCCCCAGTGCTGGGGCGG	CCCCGCCCCCAGTGCTGGGGCGG	-	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	CCCCGCCCCCAGTGCTGGGGCGG	CCCCGCCCCCAGTGCTGGGGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MZF1	NM_198055	exon6	c.1032_1054del	p.344_352del	.	.	65	10	26	0	.	91
NBPF10	100132406	hgsc.bcm.edu	37	1	145367800	145367800	+	Missense_Mutation	SNP	G	G	A	rs77814877		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001039703	exon83	c.G10396A	p.D3466N	.	.	9	4	2	0	G|1.000;|0.000	.
ND2	0	bcgsc.ca	37	MT	4993	4993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	ENST00000361453	exon1	c.T524C	p.L175P	.	.	657	30	157	0	.	.
NEU2	4759	bcgsc.ca	37	2	233899377	233899377	+	Silent	SNP	C	C	T	rs2233394	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	NEU2	NM_005383	exon2	c.C753T	p.D251D	.	.	331	12	314	2	C|0.833;T|0.167	90
NKAIN1	79570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	31654558	31654558	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	NKAIN1	NM_024522	exon7	c.T616A	p.S206T	.	.	291	82	274	0	.	91
OR52B6	340980	bcgsc.ca	37	11	5602928	5602928	+	Silent	SNP	G	G	C	rs10838375	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	OR52B6	NM_001005162	exon1	c.G822C	p.A274A	.	.	184	8	202	0	A|0.000;C|0.634;G|0.366	69
OR52E4	390081	bcgsc.ca	37	11	5906291	5906291	+	Missense_Mutation	SNP	T	T	C	rs11823842	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	OR52E4	NM_001005165	exon1	c.T769C	p.F257L	.	.	105	5	156	0	T|0.627;C|0.373	70
PALM	5064	bcgsc.ca	37	19	727021	727021	+	Missense_Mutation	SNP	G	G	A	rs201995410		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PALM	NM_002579	exon3	c.G71A	p.R24Q	.	.	113	5	117	0	G|1.000;A|0.000	68
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	32074424	32074424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PDZD2	NM_178140	exon17	c.G3212T	p.G1071V	.	.	55	14	66	0	.	563
PLEKHO2	80301	hgsc.bcm.edu	37	15	65134221	65134221	+	Missense_Mutation	SNP	G	G	T	rs201633413		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PLEKHO2	NM_001195059	exon1	c.G6T	p.E2D	.	.	18	9	0	0	.	92
POLA1	5422	bcgsc.ca	37	X	24844699	24844699	+	Silent	SNP	C	C	A	rs11573423	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	POLA1	NM_016937	exon32	c.C3699A	p.V1233V	.	.	166	7	146	0	0|0.014;A|0.042	229
PPP4R1L	55370	ucsc.edu	37	20	56820880	56820880	+	RNA	SNP	C	C	T	rs3746406	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PPP4R1L	.	.	.	.	.	.	11	5	13	0	C|0.520;T|0.480	226
PRB2	653247	ucsc.edu	37	12	11546677	11546677	+	Missense_Mutation	SNP	C	C	T	rs76491584		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PRB2	NM_006248	exon3	c.G335A	p.R112Q	.	.	190	32	226	21	C|0.500;T|0.500	22
PRDM12	59335	broad.mit.edu	37	9	133556672	133556672	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PRDM12	NM_021619	exon5	c.G720T	p.A240A	.	.	61	4	10	0	.	90
PXMP2	5827	hgsc.bcm.edu	37	12	133264332	133264332	+	Silent	SNP	C	C	T	rs11538534	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PXMP2	NM_018663	exon1	c.C76T	p.L26L	.	.	5	5	0	0	C|0.572;T|0.428	90
RASSF10	644943	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	13032525	13032525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001080521	exon1	c.G1402A	p.V468M	.	.	240	69	220	0	.	.
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	112541163	112541163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001134363	exon2	c.C796A	p.H266N	.	.	104	8	88	0	.	.
RPAP1	26015	bcgsc.ca	37	15	41829230	41829230	+	Silent	SNP	A	A	G	rs721772	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	RPAP1	NM_015540	exon2	c.T94C	p.L32L	.	.	146	6	167	1	A|0.591;G|0.409	153
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237947912	237947912	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	RYR2	NM_001035	exon90	c.C12900T	p.S4300S	.	.	63	16	89	0	.	158
SCAMP3	10067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155226183	155226183	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SCAMP3	NM_005698	exon9	c.G925C	p.A309P	.	.	80	20	84	0	.	93
SH3BP4	23677	bcgsc.ca	37	2	235951819	235951819	+	Silent	SNP	A	A	G	rs3795962	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SH3BP4	NM_014521	exon4	c.A2406G	p.L802L	.	.	326	9	365	5	G|0.647;N|0.001	94
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SHARPIN	NM_030974	exon1	c.C154A	p.R52R	.	.	6	6	0	0	G|0.108;T|0.892	523
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	45242105	45242105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SLC13A3	NM_022829	exon2	c.C371G	p.P124R	.	.	126	26	138	0	.	91
SLC2A9	56606	bcgsc.ca	37	4	9922130	9922130	+	Missense_Mutation	SNP	C	C	T	rs3733591	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SLC2A9	NM_020041	exon7	c.G881A	p.R294H	.	.	334	10	374	3	C|0.781;T|0.219	93
SLC30A4	7782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45814342	45814342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SLC30A4	NM_013309	exon2	c.G211T	p.A71S	.	.	124	30	176	1	.	90
SNAPC4	6621	bcgsc.ca	37	9	139273402	139273402	+	Silent	SNP	C	C	T	rs3812567	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SNAPC4	NM_003086	exon21	c.G2877A	p.A959A	.	.	180	10	251	2	C|0.201;T|0.799	90
SPDYE3	441272	bcgsc.ca	37	7	99917416	99917416	+	Silent	SNP	G	G	A	rs112622797	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SPDYE3	NM_001004351	exon9	c.G1575A	p.P525P	.	.	121	5	119	1	G|0.905;A|0.095	22
SPNS3	201305	bcgsc.ca	37	17	4352564	4352564	+	Missense_Mutation	SNP	G	G	A	rs147966930	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SPNS3	NM_182538	exon7	c.G805A	p.A269T	.	.	101	5	99	0	G|0.999;A|0.001	153
SSH1	54434	broad.mit.edu	37	12	109192892	109192892	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SSH1	NM_001161331	exon12	c.A1266G	p.E422E	.	.	75	4	103	0	.	94
STAG3L2	442582	ucsc.edu	37	7	74306639	74306639	+	RNA	SNP	C	C	G	rs76222990	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	20	7	34	2	C|0.500;G|0.500	.
TAS2R20	259295	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11150077	11150077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TAS2R20	NM_176889	exon1	c.T398C	p.V133A	.	.	49	9	96	0	.	90
TBC1D3P1-DHX40P1	653645	broad.mit.edu	37	17	58066651	58066651	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	109	6	118	0	.	.
TCEAL2	140597	bcgsc.ca	37	X	101382005	101382005	+	Missense_Mutation	SNP	G	G	C	rs5944856	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TCEAL2	NM_080390	exon3	c.G203C	p.G68A	.	.	100	6	165	0	G|0.840;C|0.160	130
TFAP2D	83741	broad.mit.edu	37	6	50696636	50696636	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TFAP2D	NM_172238	exon4	c.T666G	p.S222R	.	.	72	4	98	0	.	159
TMEM63A	9725	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226047035	226047035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TMEM63A	NM_014698	exon15	c.T1238C	p.I413T	.	.	187	32	275	1	.	91
TNKS1BP1	85456	bcgsc.ca	37	11	57081197	57081197	+	Missense_Mutation	SNP	G	G	C	rs4939134	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TNKS1BP1	NM_033396	exon5	c.C965G	p.T322S	.	.	186	6	250	3	G|0.586;C|0.414	91
TNRC6C	57690	broad.mit.edu	37	17	76094497	76094497	+	Silent	SNP	A	A	G	rs200084854		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TNRC6C	NM_001142640	exon19	c.A4488G	p.E1496E	.	.	128	5	179	1	A|0.999;G|0.000	24
TRIL	9865	bcgsc.ca	37	7	28997141	28997141	+	RNA	SNP	G	G	C	rs6950750	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	.	.	.	.	.	.	213	10	204	2	G|0.678;C|0.322	.
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18604415	18604415	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TUBA8	NM_018943	exon2	c.A173T	p.N58I	.	.	212	56	248	0	.	90
TXNRD2	10587	bcgsc.ca	37	22	19882984	19882984	+	Missense_Mutation	SNP	T	T	G	rs5992495	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TXNRD2	.	.	.	.	.	.	203	9	274	1	T|0.767;G|0.233	92
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54914613	54914613	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	UNC13C	NM_001080534	exon29	c.A6195G	p.V2065V	.	.	70	15	85	0	.	51
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	UPF3A	NM_080687	exon2	c.C271T	p.L91L	.	.	82	7	51	2	.	91
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	UQCRFS1	NM_006003	exon1	c.A24G	p.S8S	.	.	5	5	0	0	T|0.072;C|0.928	226
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	UQCRFS1	NM_006003	exon1	c.T16G	p.S6A	.	.	5	5	0	0	A|0.065;C|0.935	226
WNT9A	7483	bcgsc.ca	37	1	228113046	228113046	+	Silent	SNP	C	C	T	rs8192629	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	WNT9A	NM_003395	exon2	c.G270A	p.A90A	.	.	200	7	117	1	C|0.927;T|0.073	523
YEATS4	8089	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69753774	69753774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	YEATS4	NM_006530	exon1	c.T22C	p.F8L	.	.	155	44	159	1	.	226
ZNF267	10308	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31896503	31896503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF267	NM_003414	exon3	c.A152T	p.D51V	.	.	85	20	89	1	.	138
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	22843497	22843497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF280B	NM_080764	exon4	c.A227T	p.D76V	.	.	69	5	69	0	.	70
ZNF362	149076	broad.mit.edu;bcgsc.ca	37	1	33745866	33745866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF362	NM_152493	exon5	c.T491A	p.I164N	.	.	336	19	387	1	.	68
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109687663	109687663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF462	NM_021224	exon3	c.G1470T	p.Q490H	.	.	148	47	236	0	.	95
ZNF814	730051	bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	107	30	85	3	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	131	41	86	0	.	.
ZNF83	55769	bcgsc.ca	37	19	53117531	53117531	+	Missense_Mutation	SNP	C	C	T	rs1056185	byfrequency	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF83	NM_018300	exon3	c.G287A	p.S96N	.	.	133	7	127	1	C|0.299;T|0.700	91
