Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABR	29	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	909373	909374	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ABR	NM_021962	exon23	c.2527_2528insC	p.I843fs	.	.	139	47	102	0	.	91
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28210546	28210546	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADAMTS1	NM_006988	exon9	c.A2256G	p.E752E	.	.	83	35	69	0	.	272
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	7706898	7706910	+	Frame_Shift_Del	DEL	TGGGCGTGCATTC	TGGGCGTGCATTC	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TGGGCGTGCATTC	TGGGCGTGCATTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADCY2	NM_020546	exon8	c.1151_1163del	p.384_388del	.	.	264	59	228	0	.	97
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49508566	49508566	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADNP	NM_015339	exon5	c.T2685G	p.P895P	.	.	161	84	112	0	.	92
AGAP1	116987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237032725	237032725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGAP1	NM_001037131	exon18	c.A2533G	p.N845D	.	.	382	174	293	0	.	93
AGAP2	116986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58125709	58125709	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGAP2	NM_001122772	exon8	c.C1836T	p.L612L	.	.	109	50	81	0	.	716
AGPAT9	84803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	84457903	84457903	+	Missense_Mutation	SNP	T	T	A	rs150911365	alternate_allele	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGPAT9	NM_001256421	exon2	c.T128A	p.V43E	.	.	36	28	47	0	T|1.000;C|0.000	91
ANKRD30BL	554226	ucsc.edu	37	2	132919501	132919501	+	RNA	SNP	T	T	G	rs78576926		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	.	.	.	.	.	.	30	17	11	0	T|0.500;G|0.500	.
ANKS3	124401	bcgsc.ca	37	16	4748825	4748825	+	Silent	SNP	C	C	T	rs841214	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ANKS3	NM_133450	exon13	c.G1527A	p.Q509Q	.	.	44	4	70	0	C|0.602;T|0.398	90
ANO2	57101	bcgsc.ca	37	12	6030302	6030302	+	Silent	SNP	T	T	C	rs3741902	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ANO2	NM_020373	exon3	c.A426G	p.G142G	.	.	181	8	159	2	T|0.838;C|0.162	139
APC2	10297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1456316	1456316	+	Silent	SNP	G	G	A	rs138830892	alternate_allele	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	APC2	NM_005883	exon8	c.G729A	p.A243A	.	.	201	68	159	0	G|1.000;C|0.000	290
ASH1L	55870	hgsc.bcm.edu	37	1	155429586	155429586	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ASH1L	NM_018489	exon5	c.5086+2C>A	.	.	.	95	4	34	0	.	234
ASPM	259266	bcgsc.ca	37	1	197073932	197073932	+	Silent	SNP	T	T	C	rs2878749	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ASPM	NM_018136	exon18	c.A4449G	p.K1483K	.	.	67	4	38	0	T|0.719;C|0.281	615
BAG4	9530	ucsc.edu;bcgsc.ca	37	8	38050279	38050279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BAG4	NM_004874	exon2	c.G344T	p.S115I	.	.	43	4	67	0	.	228
BANK1	55024	bcgsc.ca	37	4	102951333	102951333	+	Missense_Mutation	SNP	G	G	A	rs76745970	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BANK1	NM_017935	exon10	c.G1811A	p.R604Q	.	.	108	5	177	1	G|0.988;A|0.012	93
BBS2	583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56548459	56548459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BBS2	NM_031885	exon2	c.A251T	p.N84I	.	.	140	109	256	0	.	91
BCL2L1	598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30309743	30309743	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BCL2L1	NM_138578	exon2	c.A279T	p.A93A	.	.	279	83	141	0	.	1084
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu	37	6	136589436	136589436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BCLAF1	NM_014739	exon10	c.C2261T	p.S754F	.	.	94	11	106	0	.	228
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	15349580	15349580	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BRD4	NM_058243	exon19	c.G3994T	p.E1332X	.	.	135	66	62	0	.	767
C16orf96	342346	broad.mit.edu	37	16	4644481	4644481	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_001145011	exon13	c.C2997T	p.Y999Y	.	.	131	4	134	0	.	.
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181479711	181479711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CACNA1E	NM_001205293	exon2	c.G365A	p.R122Q	.	.	418	69	167	0	.	95
CCDC135	84229	ucsc.edu;bcgsc.ca	37	16	57738810	57738810	+	Missense_Mutation	SNP	T	T	A	rs58373934	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CCDC135	NM_032269	exon6	c.T722A	p.V241E	.	.	58	5	73	0	T|0.897;A|0.103	90
CDH19	28513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	64239420	64239420	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CDH19	NM_021153	exon2	c.C22G	p.R8G	.	.	142	76	103	0	.	516
CEBPZ	10153	bcgsc.ca	37	2	37438156	37438156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CEBPZ	NM_005760	exon13	c.C2870A	p.A957D	.	.	49	4	67	0	.	91
CEP164	22897	bcgsc.ca	37	11	117261853	117261853	+	Silent	SNP	C	C	T	rs494553	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CEP164	NM_001271933	exon16	c.C2214T	p.S738S	.	.	163	6	270	3	C|0.965;T|0.035	69
CERS5	91012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50529577	50529577	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_147190	exon8	c.C810T	p.D270D	.	.	117	46	107	0	.	.
CHERP	10523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	16636060	16636060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CHERP	NM_006387	exon10	c.C1734G	p.F578L	.	.	187	67	98	0	.	92
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130941315	130941315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CIZ1	NM_001257975	exon8	c.G1261A	p.V421M	.	.	174	81	110	0	.	92
COG6	57511	bcgsc.ca	37	13	40293809	40293809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	COG6	NM_001145079	exon15	c.G1429T	p.V477F	.	.	47	4	82	0	.	227
COX1	5742	broad.mit.edu	37	MT	6915	6915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	ENST00000361624	exon1	c.G1012A	p.V338M	.	.	27	15	15	0	.	.
CXXC5	51523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	139060853	139060853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CXXC5	NM_016463	exon2	c.C745G	p.L249V	.	.	115	8	99	0	.	90
DCAF8L2	347442	hgsc.bcm.edu	37	X	27765414	27765414	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DCAF8L2	NM_001136533	exon1	c.G402A	p.E134E	.	.	80	11	65	0	.	42
DDX41	51428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176940709	176940709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DDX41	NM_016222	exon10	c.C1075A	p.R359S	.	.	212	105	183	0	.	226
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31747756	31747756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DMD	NM_004006	exon52	c.C7652T	p.T2551M	.	.	202	69	207	1	.	265
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196891544	196891544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DNAH7	NM_018897	exon7	c.A607G	p.I203V	.	.	129	67	108	0	.	102
DNM1P46	196968	ucsc.edu;bcgsc.ca	37	15	100332743	100332743	+	RNA	SNP	A	A	G	rs8039516	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	.	.	.	.	.	.	46	4	34	0	A|0.746;G|0.254	.
DOCK8	81704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	429834	429834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DOCK8	NM_203447	exon36	c.T4606C	p.F1536L	.	.	139	45	118	1	.	517
DSPP	1834	bcgsc.ca	37	4	88536614	88536614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DSPP	NM_014208	exon5	c.A2800G	p.N934D	.	.	798	65	864	3	.	90
DSPP	1834	bcgsc.ca	37	4	88536655	88536655	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DSPP	NM_014208	exon5	c.C2841T	p.S947S	.	.	787	64	895	1	.	90
DSPP	1834	mdanderson.org	37	4	88536460	88536460	+	Silent	SNP	C	C	T	rs199691318		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DSPP	NM_014208	exon5	c.C2646T	p.S882S	.	.	605	161	816	1	.	90
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DSPP	NM_014208	exon5	c.T2643C	p.D881D	.	.	606	129	834	0	.	90
EDNRB	1910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	78474006	78474006	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	EDNRB	NM_001201397	exon7	c.A1452G	p.K484K	.	.	20	16	34	0	.	522
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	EEF1B2	NM_021121	exon3	c.G135A	p.P45P	.	.	234	5	198	2	.	227
ERRFI1	54206	hgsc.bcm.edu	37	1	8074333	8074343	+	Frame_Shift_Del	DEL	TCCTCTTCATG	TCCTCTTCATG	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TCCTCTTCATG	TCCTCTTCATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ERRFI1	NM_018948	exon4	c.316_326del	p.106_109del	.	.	30	0	124	0	.	91
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8074333	8074340	+	Frame_Shift_Del	DEL	TCCTCTTC	TCCTCTTC	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TCCTCTTC	TCCTCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ERRFI1	NM_018948	exon4	c.319_326del	p.107_109del	.	.	30	15	124	0	.	91
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8074342	8074343	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ERRFI1	NM_018948	exon4	c.316_317del	p.106_106del	.	.	26	15	119	0	.	91
EVL	51466	broad.mit.edu	37	14	100551144	100551144	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	EVL	NM_016337	exon2	c.T132C	p.T44T	.	.	98	4	94	0	.	154
FAM205B	389715	broad.mit.edu	37	9	34835273	34835273	+	RNA	SNP	A	A	C	rs521552	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	.	.	.	.	.	.	414	10	336	1	A|0.817;C|0.183	.
FGF20	26281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16850701	16850701	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	FGF20	NM_019851	exon3	c.C516T	p.D172D	.	.	151	51	114	0	.	522
FHAD1	114827	bcgsc.ca	37	1	15708540	15708540	+	Missense_Mutation	SNP	A	A	G	rs1010294	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	FHAD1	NM_052929	exon30	c.A3973G	p.I1325V	.	.	275	9	430	5	T|0.261;G|0.242	69
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	34340646	34340647	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	FHOD3	NM_025135	exon23	c.3976_3977insGT	p.E1326fs	.	.	156	88	85	0	.	139
FNBP4	23360	broad.mit.edu	37	11	47765704	47765704	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	FNBP4	NM_015308	exon8	c.A1257T	p.R419R	.	.	130	4	83	0	.	91
GAS2	2620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22777439	22777439	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	GAS2	NM_177553	exon7	c.C663G	p.F221L	.	.	137	38	95	0	.	652
GDNF	2668	broad.mit.edu	37	5	37834835	37834835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	GDNF	NM_001190468	exon2	c.C115A	p.L39M	.	.	112	5	61	0	.	90
GPR52	9293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	174417683	174417683	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	GPR52	NM_005684	exon1	c.A434T	p.K145M	.	.	410	157	135	0	.	91
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186086707	186086707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	HMCN1	NM_031935	exon77	c.G11800A	p.G3934S	.	.	307	101	104	0	.	113
HNRNPCL1	343069	ucsc.edu;bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	.	.	70	10	93	1	.	68
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34721747	34721747	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	IFNAR1	NM_000629	exon8	c.T1041C	p.H347H	.	.	101	45	106	0	.	91
IL12RB1	3594	broad.mit.edu	37	19	18197744	18197744	+	Splice_Site	SNP	T	T	A	rs393548	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	IL12RB1	.	.	.	.	.	.	72	4	67	0	T|0.804;A|0.196	91
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156828374	156828381	+	Frame_Shift_Del	DEL	GCAGGCAT	GCAGGCAT	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	GCAGGCAT	GCAGGCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	INSRR	NM_014215	exon1	c.33_40del	p.11_14del	.	.	354	28	135	0	.	1403
ITGAL	3683	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30525112	30525112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ITGAL	NM_002209	exon25	c.A2807G	p.Y936C	.	.	123	68	117	2	.	994
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31282347	31282347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ITGAM	NM_000632	exon6	c.G500A	p.R167Q	.	.	203	63	151	0	.	226
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	139876582	139876582	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	JHDM1D	NM_030647	exon1	c.G156C	p.M52I	.	.	75	29	49	0	.	91
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48309166	48309166	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	KIAA0146	NM_001080394	exon6	c.A756T	p.S252S	.	.	92	38	100	0	.	68
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	142	5	83	2	.	92
LOC100996307	0	bcgsc.ca	37	19	43130881	43130881	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	.	.	.	.	.	.	32	8	19	0	.	.
LOC442028	0	ucsc.edu	37	2	95539093	95539093	+	RNA	SNP	C	C	A	rs112056322		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	.	.	.	.	.	.	25	4	20	0	.	.
MAB21L3	126868	bcgsc.ca	37	1	116670774	116670774	+	Silent	SNP	A	A	G	rs10754431	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MAB21L3	NM_152367	exon6	c.A669G	p.G223G	.	.	52	4	90	0	A|0.608;G|0.392	91
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	75649900	75649900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MAGEE1	NM_020932	exon1	c.G1577A	p.R526H	.	.	105	30	118	0	.	262
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10391780	10391780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MARCH6	NM_005885	exon7	c.G703C	p.D235H	.	.	246	55	168	0	.	501
MED27	9442	ucsc.edu	37	9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MED27	NM_004269	exon8	c.C881T	p.P294L	.	.	169	36	145	16	.	69
MEGF6	1953	bcgsc.ca	37	1	3418391	3418391	+	Silent	SNP	C	C	T	rs4648508	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MEGF6	NM_001409	exon18	c.G2283A	p.P761P	.	.	211	7	261	3	C|0.702;T|0.298	90
MLXIPL	51085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73020062	73020062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MLXIPL	NM_032954	exon7	c.T857G	p.L286R	.	.	175	84	134	1	.	91
MRPS30	10884	broad.mit.edu	37	5	44815050	44815050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MRPS30	NM_016640	exon5	c.G1066T	p.V356F	.	.	89	4	80	0	.	227
MYH8	4626	ucsc.edu;bcgsc.ca	37	17	10315757	10315757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MYH8	NM_002472	exon14	c.A1346T	p.Q449L	.	.	457	184	395	2	.	101
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2054129	2054129	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MYOM2	NM_003970	exon22	c.T2832C	p.C944C	.	.	172	105	128	0	.	95
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20083871	20083871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	NAV2	NM_001244963	exon22	c.C5018T	p.S1673F	.	.	41	22	22	0	.	96
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101580582	101580590	+	In_Frame_Del	DEL	GGAAAGGAG	GGAAAGGAG	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	GGAAAGGAG	GGAAAGGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	NPAS2	NM_002518	exon8	c.661_669del	p.221_223del	.	.	94	24	88	0	.	94
OR10C1	442194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29408254	29408254	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	OR10C1	NM_013941	exon1	c.462delG	p.V154fs	.	.	172	52	98	0	.	22
OSCP1	127700	broad.mit.edu;bcgsc.ca	37	1	36898067	36898067	+	Missense_Mutation	SNP	T	T	C	rs34409118	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	OSCP1,NS,NS,0	OSCP1	NM_145047	exon3	c.A391G	p.T131A	.	.	156	6	191	1	T|0.800;C|0.200	4
OVGP1	5016	bcgsc.ca	37	1	111957525	111957525	+	Missense_Mutation	SNP	G	G	C	rs61742558	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	OVGP1	NM_002557	exon11	c.C1598G	p.T533S	.	.	31	5	104	1	G|0.940;C|0.060	135
PGLYRP3	114771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153277442	153277442	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PGLYRP3	NM_052891	exon3	c.C357A	p.A119A	.	.	590	113	198	0	.	94
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47876604	47876604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PKD1L1	NM_138295	exon37	c.A5858G	p.H1953R	.	.	373	84	291	0	.	145
PLK3	1263	bcgsc.ca	37	1	45269333	45269333	+	Silent	SNP	A	A	G	rs17886354	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PLK3	NM_004073	exon9	c.A1134G	p.T378T	.	.	131	6	188	2	A|0.928;G|0.072	333
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	53103948	53103948	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_182595	exon1	c.C584G	p.P195R	.	.	71	33	43	0	.	.
PPFIA2	8499	broad.mit.edu;bcgsc.ca	37	12	81657137	81657137	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PPFIA2	NM_001220473	exon30	c.C3588A	p.T1196T	.	.	173	6	127	0	.	231
PVRL4	81607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161044015	161044015	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PVRL4	NM_030916	exon6	c.C1149T	p.T383T	.	.	620	126	204	0	.	92
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145741755	145741755	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	RECQL4	NM_004260	exon5	c.G748C	p.G250R	.	.	41	13	22	0	.	1083
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	79174651	79174651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ROBO1	NM_002941	exon3	c.C127T	p.P43S	.	.	334	149	269	0	.	67
SDK2	54549	broad.mit.edu	37	17	71354323	71354323	+	Missense_Mutation	SNP	C	C	T	rs146597384		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SDK2	NM_001144952	exon40	c.G5488A	p.V1830M	.	.	101	4	65	0	C|1.000;T|0.000	24
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	151110260	151110260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SEMA6C	NM_001178061	exon10	c.A683G	p.Q228R	.	.	552	29	186	0	.	92
SLC35G3	146861	broad.mit.edu	37	17	33521194	33521194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_152462	exon1	c.C133A	p.L45M	.	.	171	11	100	1	.	.
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158622406	158622406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SPTA1	NM_003126	exon23	c.C3226T	p.R1076C	.	.	300	106	127	0	.	142
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158624516	158624516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SPTA1	NM_003126	exon21	c.A2921G	p.E974G	.	.	227	35	79	0	.	142
SSBP3	23648	broad.mit.edu	37	1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SSBP3	NM_145716	exon1	c.A17G	p.K6R	.	.	57	4	45	0	.	90
STARD6	147323	ucsc.edu	37	18	51863589	51863589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	STARD6	NM_139171	exon3	c.C173A	p.P58Q	.	.	41	4	70	0	.	91
SV2C	22987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	75427868	75427868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SV2C	NM_014979	exon2	c.G293T	p.S98I	.	.	192	80	151	0	.	91
TBP	6908	mdanderson.org	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	.	.	60	9	82	1	.	91
TCHH	7062	hgsc.bcm.edu	37	1	152084175	152084175	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TCHH	NM_007113	exon3	c.A1518G	p.Q506Q	.	.	262	19	73	0	.	72
TCHH	7062	hgsc.bcm.edu	37	1	152084221	152084221	+	Missense_Mutation	SNP	A	A	C	rs202112040		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TCHH	NM_007113	exon3	c.T1472G	p.L491R	.	.	268	17	80	0	.	72
TCHH	7062	hgsc.bcm.edu	37	1	152084224	152084224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TCHH	NM_007113	exon3	c.A1469G	p.K490R	.	.	267	11	79	0	.	72
TCP10	6953	ucsc.edu	37	6	167789488	167789488	+	Silent	SNP	C	C	T	rs9355636	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TCP10	NM_004610	exon6	c.G654A	p.T218T	.	.	69	9	98	3	C|0.979;T|0.021	89
TEX12	56158	bcgsc.ca	37	11	112040027	112040027	+	Silent	SNP	A	A	G	rs360712	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TEX12	NM_031275	exon2	c.A36G	p.R12R	.	.	90	5	107	0	A|0.832;G|0.168	90
TG	7038	broad.mit.edu	37	8	133898695	133898695	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TG	NM_003235	exon9	c.G1078T	p.E360X	.	.	118	3	76	0	.	145
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11633070	11633070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	THSD7A	NM_015204	exon3	c.G1082A	p.C361Y	.	.	136	61	128	0	.	71
TNIP3	79931	hgsc.bcm.edu	37	4	122078317	122078317	+	Missense_Mutation	SNP	T	T	C	rs10000692	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TNIP3	NM_001244764	exon7	c.A526G	p.K176E	.	.	69	17	59	0	T|0.975;C|0.025	91
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	223968572	223968572	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TP53BP2	NM_001031685	exon18	c.C3388G	p.Q1130E	.	.	83	6	61	0	.	229
TRPM8	79054	broad.mit.edu;bcgsc.ca	37	2	234863799	234863799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TRPM8	NM_024080	exon11	c.A1267G	p.K423E	.	.	214	7	166	0	.	94
TSEN34	79042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54696036	54696036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TSEN34	NM_024075	exon4	c.A557G	p.Q186R	.	.	259	126	206	1	.	90
UGT2B28	54490	ucsc.edu;bcgsc.ca	37	4	70146804	70146804	+	Missense_Mutation	SNP	G	G	C	rs72551402		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	UGT2B28	NM_053039	exon1	c.G586C	p.V196L	.	.	29	7	195	1	.	91
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	54914531	54914531	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	UNC13C	NM_001080534	exon29	c.6113delC	p.S2038fs	.	.	110	43	92	0	.	51
VGF	7425	broad.mit.edu	37	7	100806870	100806870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	VGF	NM_003378	exon2	c.C1255T	p.R419C	.	.	40	3	27	0	.	90
VPS54	51542	broad.mit.edu	37	2	64160994	64160994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	VPS54	NM_016516	exon12	c.A1552G	p.I518V	.	.	107	4	93	0	.	90
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85724505	85724505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	WDFY3	NM_014991	exon16	c.C2545T	p.P849S	.	.	233	170	345	0	.	93
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177058704	177058704	+	Missense_Mutation	SNP	G	G	A	rs200199041		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	WDR17	NM_170710	exon10	c.G1373A	p.R458Q	.	.	32	26	61	0	.	95
WNT6	7475	bcgsc.ca	37	2	219736472	219736472	+	Silent	SNP	G	G	A	rs13417214	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	WNT6	NM_006522	exon3	c.G567A	p.A189A	.	.	349	11	230	0	G|0.979;A|0.021	564
ZKSCAN7	55888	bcgsc.ca	37	3	44607013	44607013	+	Missense_Mutation	SNP	T	T	C	rs13081859	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_018651	exon3	c.T458C	p.F153S	.	.	141	6	109	0	T|0.732;C|0.268	.
ZNF431	170959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21366647	21366647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF431	NM_133473	exon5	c.G1541A	p.C514Y	.	.	78	26	37	0	.	514
ZNF443	10224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12542333	12542333	+	Missense_Mutation	SNP	G	G	A	rs143162114	byfrequency	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF443	NM_005815	exon4	c.C653T	p.T218M	.	.	308	19	201	0	G|0.999;A|0.001	91
ZNF461	92283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37130125	37130125	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_153257	exon6	c.A1122T	p.I374I	.	.	90	38	81	0	.	.
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37642633	37642633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF585A	NM_199126	exon6	c.G2003T	p.C668F	.	.	358	130	226	0	.	92
ZNF638	27332	bcgsc.ca	37	2	71576209	71576209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF638	NM_014497	exon2	c.T125G	p.F42C	.	.	342	160	284	4	.	94
