Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTS2	9509	broad.mit.edu;bcgsc.ca	37	5	178541281	178541281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ADAMTS2	NM_014244	exon22	c.G3223A	p.V1075I	.	.	162	41	119	2	.	228
AHNAK	79026	broad.mit.edu	37	11	62285327	62285327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	AHNAK	NM_001620	exon5	c.C16562A	p.P5521H	.	.	71	4	51	0	.	109
AMZ1	155185	bcgsc.ca	37	7	2752487	2752487	+	Missense_Mutation	SNP	G	G	A	rs7776970	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	AMZ1	NM_133463	exon7	c.G1472A	p.R491H	.	.	318	9	214	1	G|0.664;A|0.336	90
ANKRD30BP2	149992	broad.mit.edu;ucsc.edu	37	21	14417587	14417587	+	RNA	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	.	.	.	.	.	.	102	17	105	0	.	.
APC	324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	112111324	112111324	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	APC,NS,carcinoma,-2	APC	NM_001127511	exon4	c.453-2A>G	.	.	.	49	21	50	0	.	12026
ARHGEF1	9138	broad.mit.edu;bcgsc.ca	37	19	42409130	42409130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ARHGEF1	NM_199002	exon23	c.T2236G	p.W746G	.	.	63	7	46	0	.	293
ARHGEF15	22899	bcgsc.ca	37	17	8216468	8216468	+	Missense_Mutation	SNP	T	T	C	rs871841	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ARHGEF15	NM_025014	exon3	c.T830C	p.L277P	.	.	142	5	58	0	T|0.318;G|0.136	230
ARID1B	57492	broad.mit.edu	37	6	157527596	157527596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ARID1B	NM_020732	exon20	c.C5321A	p.P1774Q	.	.	68	6	37	1	.	154
ATF5	22809	bcgsc.ca	37	19	50436115	50436115	+	Silent	SNP	C	C	T	rs61742136	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ATF5	NM_012068	exon4	c.C615T	p.T205T	.	.	213	9	147	0	C|0.967;T|0.033	92
BET1	10282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	93628605	93628605	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	BET1	NM_005868	exon2	c.T21C	p.G7G	.	.	46	16	40	0	.	90
C10orf131	100127889	broad.mit.edu	37	10	97687049	97687049	+	Missense_Mutation	SNP	G	G	C	rs41291582	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	C10orf131	NM_001130446	exon7	c.G272C	p.S91T	.	.	92	4	75	2	G|0.989;C|0.011	68
CASC5	57082	bcgsc.ca	37	15	40914772	40914772	+	Silent	SNP	C	C	T	rs11855334	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	CASC5	NM_170589	exon11	c.C2388T	p.V796V	.	.	204	8	145	2	C|0.632;T|0.368	660
CC2D1A	54862	bcgsc.ca	37	19	14030689	14030689	+	Silent	SNP	T	T	C	rs10410239	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	CC2D1A	NM_017721	exon12	c.T1281C	p.G427G	.	.	412	12	250	1	T|0.665;C|0.335	90
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	CCDC102A	NM_033212	exon2	c.C286T	p.R96W	.	.	4	4	0	0	G|0.001;A|0.999	91
COL4A4	1286	bcgsc.ca	37	2	227954599	227954599	+	Missense_Mutation	SNP	G	G	A	rs2229814	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	COL4A4	NM_000092	exon21	c.C1444T	p.P482S	.	.	63	5	58	0	G|0.219;T|0.291	142
DNAH17	8632	bcgsc.ca	37	17	76449505	76449505	+	Silent	SNP	G	G	C	rs2289751	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	DNAH17	NM_173628	exon65	c.C10449G	p.T3483T	.	.	303	8	131	2	G|0.524;C|0.475	142
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	DSPP	NM_014208	exon5	c.C3213A	p.D1071E	.	.	783	21	493	6	.	90
EXOC3	11336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	462103	462103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	EXOC3	NM_007277	exon8	c.G1420A	p.E474K	.	.	271	75	149	2	.	90
FAM169A	26049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74100401	74100401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	FAM169A	NM_015566	exon8	c.A829G	p.M277V	.	.	22	5	20	0	.	22
FGF17	8822	broad.mit.edu	37	8	21905706	21905706	+	Silent	SNP	C	C	T	rs147413881	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	FGF17	NM_003867	exon5	c.C597T	p.G199G	.	.	195	5	133	0	C|0.997;T|0.003	522
GPR20	2843	ucsc.edu	37	8	142367400	142367400	+	Silent	SNP	G	G	A	rs11167054	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	GPR20	NM_005293	exon2	c.C624T	p.P208P	.	.	16	5	12	0	G|0.247;A|0.753	91
HDAC3	8841	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	141007750	141007750	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HDAC3	NM_003883	exon9	c.C696G	p.Y232X	.	.	175	53	121	1	.	227
HELZ2	85441	bcgsc.ca	37	20	62200929	62200929	+	Silent	SNP	G	G	A	rs6089925	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	NM_001037335	exon5	c.C660T	p.Y220Y	.	.	175	6	60	0	G|0.847;A|0.153	.
HOXC6	3223	hgsc.bcm.edu	37	12	54423712	54423712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HOXC6	NM_004503	exon2	c.G674T	p.R225L	.	.	84	4	90	0	.	93
HPS4	89781	broad.mit.edu	37	22	26853885	26853885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HPS4	NM_022081	exon13	c.C1895A	p.A632D	.	.	61	6	48	2	.	90
HRNR	388697	broad.mit.edu;bcgsc.ca	37	1	152188410	152188410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HRNR	NM_001009931	exon3	c.C5695A	p.Q1899K	.	.	2282	98	1303	2	.	93
HSPA5	3309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128003101	128003101	+	Missense_Mutation	SNP	G	G	T	rs200897884	alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HSPA5	NM_005347	exon2	c.C208A	p.P70T	.	.	235	63	168	1	G|0.999;A|0.000	230
IL27RA	9466	bcgsc.ca	37	19	14142705	14142705	+	Silent	SNP	C	C	T	rs113593439	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	IL27RA	NM_004843	exon1	c.C21T	p.A7A	.	.	107	5	52	0	C|0.891;T|0.109	90
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55260044	55260049	+	In_Frame_Del	DEL	GACTTC	GACTTC	-	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	GACTTC	GACTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	IL6ST	NM_175767	exon6	c.583_588del	p.195_196del	.	.	135	14	113	0	.	290
KANK1	23189	bcgsc.ca	37	9	712599	712599	+	Silent	SNP	C	C	T	rs11789987	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	KANK1	NM_001256876	exon7	c.C1833T	p.N611N	.	.	223	8	159	2	C|0.719;T|0.281	517
KIAA1731	85459	ucsc.edu	37	11	93399928	93399928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	KIAA1731	NM_033395	exon2	c.G55T	p.A19S	.	.	39	4	27	0	.	22
KLK2	3817	bcgsc.ca	37	19	51381777	51381777	+	Missense_Mutation	SNP	C	C	T	rs198977	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	KLK2	NM_005551	exon5	c.C748T	p.R250W	.	.	196	6	131	0	C|0.708;T|0.292	227
KRTAP4-5	85289	ucsc.edu	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	KRTAP4-5	NM_033188	exon1	c.T235A	p.C79S	.	.	214	33	75	3	A|0.354;T|0.646	90
LIF	3976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30640773	30640773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LIF	NM_002309	exon2	c.G169A	p.G57S	.	.	221	11	157	0	.	650
LILRB1	10859	bcgsc.ca	37	19	55142739	55142739	+	Silent	SNP	A	A	C	rs1985501	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LILRB1	NM_001081637	exon3	c.A52C	p.R18R	.	.	107	7	71	0	A|0.588;C|0.412	137
LILRB1	10859	bcgsc.ca	37	19	55143452	55143452	+	Missense_Mutation	SNP	T	T	C	rs1061680	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LILRB1	NM_001081637	exon5	c.T425C	p.I142T	.	.	189	8	119	0	T|0.567;C|0.433	137
LIPG	9388	bcgsc.ca	37	18	47093864	47093864	+	Missense_Mutation	SNP	C	C	T	rs2000813	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LIPG	NM_006033	exon3	c.C332T	p.T111I	.	.	108	5	98	1	C|0.760;T|0.240	92
LMF2	91289	bcgsc.ca	37	22	50944128	50944128	+	Silent	SNP	G	G	A	rs743615	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LMF2	NM_033200	exon6	c.C891T	p.H297H	.	.	258	8	156	1	G|0.706;A|0.294	153
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	68686847	68686847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LRRTM3	NM_178011	exon2	c.G173C	p.S58T	.	.	59	21	48	0	.	93
MFSD10	10227	bcgsc.ca	37	4	2935618	2935618	+	Silent	SNP	C	C	G	rs17851257		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	MFSD10	NM_001120	exon1	c.G33C	p.P11P	.	.	175	7	100	1	C|0.964;G|0.036	68
MMS22L	253714	bcgsc.ca	37	6	97717841	97717841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	MMS22L	NM_198468	exon7	c.C634A	p.H212N	.	.	40	4	38	0	.	92
MUC2	4583	bcgsc.ca	37	11	1093004	1093004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	MUC2	NM_002457	exon30	c.C4823A	p.P1608H	.	.	148	9	96	2	.	90
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50794186	50794186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	MYH14	NM_001145809	exon36	c.C5008T	p.R1670C	.	.	270	86	165	0	.	23
MYO18A	399687	broad.mit.edu	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	MYO18A	NM_078471	exon18	c.C2937A	p.G979G	.	.	48	5	13	0	.	22
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115374663	115374663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	NRAP	NM_001261463	exon28	c.T3121A	p.Y1041N	.	.	235	73	146	0	.	522
NUDT16P1	152195	broad.mit.edu	37	3	131081192	131081192	+	RNA	SNP	T	T	C	rs2241560	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	.	.	.	.	.	.	49	5	25	0	T|0.872;C|0.128	.
OLIG2	10215	bcgsc.ca	37	21	34399401	34399401	+	Silent	SNP	A	A	G	rs762178	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	OLIG2	NM_005806	exon2	c.A231G	p.S77S	.	.	262	12	132	1	A|0.499;G|0.501	629
OR2D3	120775	bcgsc.ca	37	11	6942695	6942695	+	Missense_Mutation	SNP	C	C	T	rs12806437	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	OR2D3	NM_001004684	exon1	c.C463T	p.R155W	.	.	153	6	97	0	C|0.859;T|0.141	68
OR4C16	219428	bcgsc.ca	37	11	55339829	55339829	+	Missense_Mutation	SNP	A	A	G	rs557590	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	OR4C16	NM_001004701	exon1	c.A226G	p.T76A	.	.	149	6	128	0	A|0.143;G|0.857	70
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22369299	22369299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	OR4M2	NM_001004719	exon1	c.T724A	p.C242S	.	.	333	69	272	0	.	69
OR6B3	150681	bcgsc.ca	37	2	240984833	240984833	+	Silent	SNP	C	C	G	rs13389099	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	OR6B3	NM_173351	exon1	c.G657C	p.A219A	.	.	803	22	514	5	C|0.751;G|0.249	68
PFKL	5211	bcgsc.ca	37	21	45732116	45732116	+	Silent	SNP	C	C	T	rs1057034	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PFKL	NM_002626	exon4	c.C366T	p.L122L	.	.	433	15	227	4	C|0.554;T|0.446	251
PLBD1	79887	broad.mit.edu	37	12	14688628	14688628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PLBD1	NM_024829	exon6	c.C809A	p.T270N	.	.	85	3	91	0	.	90
PLXNB3	5365	bcgsc.ca	37	X	153041868	153041868	+	Missense_Mutation	SNP	T	T	A	rs146832392	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PLXNB3	NM_001163257	exon29	c.T4856A	p.V1619E	.	.	175	7	86	0	T|0.965;A|0.035	130
POM121L1P	25812	broad.mit.edu	37	22	22985653	22985653	+	RNA	SNP	A	A	G	rs5759226		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	.	.	.	.	.	.	16	3	9	0	.	.
PPP1R12B	4660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202462434	202462434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PPP1R12B	NM_002481	exon15	c.C2134A	p.L712M	.	.	394	144	277	0	.	229
PRSS3	5646	bcgsc.ca	37	9	33794840	33794840	+	Silent	SNP	G	G	A	rs10117993	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PRSS3	NM_001197097	exon2	c.G51A	p.A17A	.	.	171	9	99	1	G|0.995;A|0.005	90
PTN	5764	hgsc.bcm.edu;bcgsc.ca	37	7	136938301	136938301	+	Silent	SNP	G	G	T	rs149012204	alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PTN	NM_002825	exon3	c.C199A	p.R67R	.	.	82	4	60	0	G|1.000;A|0.000	516
RBMXL3	139804	broad.mit.edu;bcgsc.ca	37	X	114424148	114424148	+	Silent	SNP	G	G	A	rs62601525		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	NM_001145346	exon1	c.G144A	p.S48S	.	.	255	7	150	1	G|0.928;A|0.072	.
RPS6KA1	6195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26881119	26881119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	RPS6KA1	NM_001006665	exon8	c.G673A	p.E225K	.	.	232	75	150	0	.	510
SAMD4B	55095	broad.mit.edu;bcgsc.ca	37	19	39866423	39866423	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SAMD4B	NM_018028	exon7	c.C801T	p.H267H	.	.	61	6	41	0	.	90
SART3	9733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108929239	108929239	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SART3	NM_014706	exon12	c.A1452G	p.R484R	.	.	163	25	99	0	.	91
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123815842	123815842	+	Silent	SNP	C	C	T	rs74679372	byfrequency;alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SBNO1	NM_001167856	exon7	c.G990A	p.T330T	.	.	104	39	63	0	C|0.999;A|0.001	292
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38791583	38791583	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SCN10A	NM_006514	exon12	c.C1848A	p.I616I	.	.	134	38	105	0	.	99
SEMA3C	10512	bcgsc.ca	37	7	80418689	80418689	+	Silent	SNP	A	A	G	rs17275986	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SEMA3C	NM_006379	exon12	c.T1287C	p.Y429Y	.	.	192	6	170	1	A|0.860;G|0.140	515
SLC19A1	6573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46951887	46951887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SLC19A1	NM_001205206	exon3	c.T365C	p.M122T	.	.	55	7	40	0	.	90
SLC9C1	285335	ucsc.edu	37	3	111918216	111918216	+	Silent	SNP	A	A	G	rs13098660	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	NM_183061	exon20	c.T2475C	p.F825F	.	.	43	5	49	0	A|0.246;G|0.754	.
SP9	100131390	hgsc.bcm.edu	37	2	175200968	175200968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	NM_001145250	exon2	c.G155T	p.R52L	.	.	100	4	60	0	.	.
SPHK2	56848	broad.mit.edu	37	19	49129385	49129385	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SPHK2	NM_020126	exon3	c.C277G	p.P93A	.	.	103	4	60	1	.	658
STT3A	3703	hgsc.bcm.edu	37	11	125476211	125476211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	STT3A	NM_152713	exon8	c.G631T	p.G211C	.	.	99	4	63	0	.	90
SYMPK	8189	broad.mit.edu	37	19	46321272	46321272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SYMPK	NM_004819	exon23	c.A3026C	p.Y1009S	.	.	166	25	106	16	.	91
TMEM132C	92293	broad.mit.edu;bcgsc.ca	37	12	129190474	129190474	+	Silent	SNP	G	G	A	rs3812792	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TMEM132C	NM_001136103	exon9	c.G2961A	p.A987A	.	.	148	6	84	0	G|0.497;A|0.503	68
TMEM177	80775	bcgsc.ca	37	2	120438515	120438515	+	Missense_Mutation	SNP	G	G	C	rs11684353	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TMEM177	NM_030577	exon2	c.G86C	p.G29A	.	.	168	7	115	1	C|0.155;G|0.845;T|0.000	91
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255146	156255146	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TMEM79	NM_032323	exon2	c.A129C	p.G43G	.	.	121	38	92	0	.	90
TMPRSS9	360200	bcgsc.ca	37	19	2413775	2413775	+	Silent	SNP	C	C	T	rs10153477	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TMPRSS9	NM_182973	exon9	c.C1230T	p.I410I	.	.	62	5	61	0	C|0.964;T|0.036	91
TREH	11181	bcgsc.ca	37	11	118529127	118529127	+	Silent	SNP	G	G	A	rs7928371	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TREH	.	.	.	.	.	.	405	12	276	2	G|0.809;A|0.191	46
TRIM31	11074	bcgsc.ca	37	6	30078330	30078330	+	Silent	SNP	C	C	T	rs2239529	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TRIM31	NM_007028	exon4	c.G639A	p.A213A	.	.	180	8	134	0	C|0.907;T|0.093	658
TRIOBP	11078	broad.mit.edu	37	22	38119859	38119859	+	Silent	SNP	C	C	T	rs66505048	bycluster;byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TRIOBP	NM_001039141	exon7	c.C1296T	p.C432C	.	.	189	10	150	1	C|0.500;T|0.500	136
tRNA-Ser2	0	broad.mit.edu	37	MT	12209	12209	+	RNA	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	.	.	.	.	.	.	30	4	11	0	.	.
TUBB2A	7280	hgsc.bcm.edu;broad.mit.edu	37	6	3154966	3154966	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TUBB2A	NM_001069	exon4	c.469delG	p.E157fs	.	.	321	69	223	0	.	92
UGGT2	55757	bcgsc.ca	37	13	96540204	96540204	+	Missense_Mutation	SNP	T	T	G	rs12876018	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	UGGT2	NM_020121	exon26	c.A2980C	p.M994L	.	.	132	7	115	0	G|0.357;N|0.001	92
USP9X	8239	broad.mit.edu	37	X	41060413	41060413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	USP9X	NM_001039591	exon31	c.G4704T	p.M1568I	.	.	77	3	50	0	.	563
WDFY4	57705	broad.mit.edu	37	10	50025396	50025396	+	Missense_Mutation	SNP	G	G	A	rs7097397	byfrequency	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	WDFY4	NM_020945	exon32	c.G5447A	p.R1816Q	.	.	158	5	90	1	G|0.603;A|0.397	22
WHSC1L1	54904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38133282	38133282	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	WHSC1L1	NM_023034	exon24	c.T4191A	p.S1397S	.	.	70	23	45	0	.	658
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49374348	49374348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	WNT1	NM_005430	exon3	c.G500T	p.W167L	.	.	145	52	92	0	.	1083
ZFR2	23217	bcgsc.ca	37	19	3806048	3806048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ZFR2	NM_015174	exon19	c.C2719A	p.L907M	.	.	115	5	65	0	.	70
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	57012123	57012123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ZNF451	NM_001031623	exon10	c.G1240A	p.D414N	.	.	82	7	65	0	.	93
ZNF800	168850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127026146	127026146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ZNF800	NM_176814	exon3	c.G125C	p.G42A	.	.	41	10	34	0	.	23
ZSWIM6	57688	broad.mit.edu	37	5	60628411	60628411	+	Silent	SNP	G	G	T	rs75429795		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	NM_020928	exon1	c.G312T	p.P104P	.	.	137	5	78	0	G|0.881;T|0.119	.
TOMM34	10953	broad.mit.edu;bcgsc.ca	37	20	43588912	43588913	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	.	.	.	p.R21L	.	.	.	.	.	.	.	
