Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58862780	58862780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	A1BG	NM_130786	exon5	c.C887T	p.P296L	.	.	96	27	68	0	.	90
ABCB5	340273	ucsc.edu;bcgsc.ca	37	7	20687181	20687181	+	Silent	SNP	C	C	T	rs2893006	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ABCB5	NM_001163941	exon10	c.C1005T	p.S335S	.	.	42	4	50	0	C|0.796;T|0.204	158
ADAMTS7	11173	bcgsc.ca	37	15	79058090	79058090	+	Missense_Mutation	SNP	A	A	G	rs2929158	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ADAMTS7	NM_014272	exon19	c.T4163C	p.V1388A	.	.	66	20	68	6	A|0.898;G|0.102	226
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7787959	7787959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AFAP1	NM_001134647	exon12	c.G1492A	p.A498T	.	.	98	19	137	0	.	90
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91671427	91671427	+	Missense_Mutation	SNP	C	C	T	rs149244653	by1000genomes	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AKAP9	NM_005751	exon19	c.C4985T	p.A1662V	.	.	40	13	63	0	C|0.999;T|0.000	755
AMIGO3	386724	broad.mit.edu	37	3	49755684	49755684	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AMIGO3	NM_198722	exon1	c.A1215C	p.P405P	.	.	58	11	42	2	.	91
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2740124	2740124	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AMZ1	NM_133463	exon2	c.G39A	p.G13G	.	.	62	13	55	0	.	90
ANKFN1	162282	broad.mit.edu;bcgsc.ca	37	17	54535232	54535232	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ANKFN1	NM_153228	exon13	c.T1458C	p.C486C	.	.	53	4	88	0	.	136
ASIC1	41	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50473752	50473752	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001256830	exon6	c.C1221T	p.G407G	.	.	324	53	325	0	.	.
ASMTL	8623	bcgsc.ca	37	X	1531687	1531687	+	Missense_Mutation	SNP	T	T	C	rs79968027	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ASMTL	NM_004192	exon12	c.A1583G	p.H528R	.	.	372	10	553	2	T|0.962;C|0.038	62
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	50287714	50287714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ATP9A	NM_006045	exon12	c.C1120T	p.R374C	.	.	100	7	123	0	.	94
AURKA	6790	bcgsc.ca	37	20	54961463	54961463	+	Missense_Mutation	SNP	T	T	C	rs1047972	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AURKA	NM_198437	exon3	c.A169G	p.I57V	.	.	111	8	141	1	T|0.155;C|0.845	1601
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160242941	160242941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BAZ2B	NM_013450	exon22	c.A3394T	p.M1132L	.	.	61	10	98	0	.	94
BCL2L14	79370	bcgsc.ca	37	12	12247616	12247616	+	Silent	SNP	T	T	C	rs11054683	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BCL2L14	NM_138723	exon5	c.T697C	p.L233L	.	.	201	7	230	0	T|0.780;C|0.220	227
BLK	640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11420535	11420535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BLK	NM_001715	exon12	c.G1228A	p.G410R	.	.	172	32	152	0	.	946
BTBD11	121551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108012091	108012091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BTBD11	NM_001018072	exon10	c.G2388T	p.R796S	.	.	83	12	86	0	.	93
C19orf10	56005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4664897	4664897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	C19orf10	NM_019107	exon3	c.C278A	p.T93N	.	.	94	13	143	0	.	90
C3orf67	200844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58849427	58849427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	C3orf67	NM_198463	exon12	c.C1075T	p.P359S	.	.	77	13	94	0	.	68
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767462	181767462	+	Missense_Mutation	SNP	C	C	G	rs189356042	by1000genomes;alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CACNA1E	NM_001205293	exon48	c.C6434G	p.S2145C	.	.	36	9	33	0	C|0.999;T|0.000	95
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7700465	7700465	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CAMTA1	NM_015215	exon7	c.C516T	p.P172P	.	.	130	27	137	0	.	520
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31683502	31683502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001257968	exon11	c.C2596A	p.Q866K	.	.	75	11	57	0	.	.
CCDC15	80071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124861393	124861393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CCDC15	NM_025004	exon9	c.G1945A	p.D649N	.	.	56	5	70	0	.	69
CD37	951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49841271	49841271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CD37	NM_001774	exon5	c.C432G	p.D144E	.	.	194	62	180	0	.	90
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61978125	61978125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CHRNA4	NM_000744	exon6	c.C1849T	p.L617F	.	.	130	23	130	0	.	91
CISD1	55847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	60037077	60037077	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CISD1	NM_018464	exon2	c.A232T	p.K78X	.	.	181	28	217	0	.	90
CNDP1	84735	bcgsc.ca	37	18	72234635	72234635	+	Silent	SNP	C	C	T	rs12960862	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CNDP1	NM_032649	exon6	c.C723T	p.Y241Y	.	.	126	7	184	2	C|0.481;T|0.519	90
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227906897	227906897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	COL4A4	NM_000092	exon37	c.G3472T	p.D1158Y	.	.	45	7	56	0	.	142
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107681209	107681209	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	COL4A6	NM_001847	exon2	c.T29A	p.L10Q	.	.	226	64	268	0	.	199
CPNE1	8904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34220601	34220601	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CPNE1	NM_003915	exon3	c.G162T	p.R54R	.	.	125	10	186	0	.	91
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59821978	59821978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DAAM1	NM_014992	exon20	c.C2482G	p.Q828E	.	.	63	12	109	0	.	227
DGAT2	84649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	75509440	75509440	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DGAT2	NM_032564	exon7	c.G978T	p.G326G	.	.	60	12	90	1	.	226
DHRS7	51635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	60631900	60631900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DHRS7	NM_016029	exon1	c.G128A	p.R43H	.	.	220	27	219	0	.	91
DISP1	84976	bcgsc.ca	37	1	223178561	223178561	+	Silent	SNP	A	A	C	rs9441941	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DISP1	NM_032890	exon10	c.A3822C	p.P1274P	.	.	206	8	168	1	A|0.467;C|0.533	68
DMBT1	1755	bcgsc.ca	37	10	124402677	124402677	+	Silent	SNP	A	A	G	rs1052715	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DMBT1	NM_007329	exon53	c.A7005G	p.P2335P	.	.	189	9	265	1	A|0.423;G|0.577	494
DNAH17	8632	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76482177	76482177	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DNAH17	NM_173628	exon46	c.C7140A	p.I2380I	.	.	43	5	82	0	.	142
DQX1	165545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74745708	74745708	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DQX1	NM_133637	exon12	c.A2019T	p.P673P	.	.	139	24	147	0	.	92
DSPP	1834	bcgsc.ca	37	4	88537177	88537177	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DSPP	NM_014208	exon5	c.C3363T	p.S1121S	.	.	457	31	653	9	.	90
DSPP	1834	bcgsc.ca	37	4	88537285	88537285	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DSPP	NM_014208	exon5	c.C3471T	p.S1157S	.	.	866	35	969	14	.	90
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1277480	1277480	+	Missense_Mutation	SNP	A	A	G	rs147424815		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DVL1	NM_004421	exon4	c.T419C	p.M140T	.	.	150	27	153	0	A|1.000;G|0.000	658
EP400	57634	hgsc.bcm.edu	37	12	132547081	132547081	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	EP400	NM_015409	exon47	c.G8169A	p.Q2723Q	.	.	137	9	134	0	.	520
EP400	57634	hgsc.bcm.edu	37	12	132547084	132547084	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	EP400	NM_015409	exon47	c.G8172A	p.Q2724Q	.	.	140	11	145	0	.	520
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143096483	143096483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	EPHA1	NM_005232	exon5	c.A859T	p.M287L	.	.	144	44	144	0	.	1436
EPHB6	2051	ucsc.edu	37	7	142562053	142562053	+	Silent	SNP	C	C	A	rs8177142	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	EPHB6	NM_004445	exon7	c.C495A	p.P165P	.	.	138	17	154	3	C|0.926;A|0.074	1489
ESPN	83715	hgsc.bcm.edu	37	1	6508712	6508712	+	Silent	SNP	T	T	C	rs77656032	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ESPN	NM_031475	exon8	c.T1476C	p.C492C	.	.	6	5	0	0	T|0.822;C|0.178	514
FAM160A1	729830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152507926	152507926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001109977	exon6	c.T866C	p.L289P	.	.	82	11	103	0	.	.
FAM205B	389715	broad.mit.edu	37	9	34835532	34835532	+	RNA	SNP	A	A	G	rs2988118	by2hit2allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	.	.	.	.	.	.	36	6	32	0	A|1.000;|0.000	.
FAM227B	196951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49620847	49620850	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_152647	exon16	c.1442_1445del	p.481_482del	.	.	67	10	75	0	.	.
FANCD2	2177	bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FANCD2	NM_001018115	exon26	c.G2406T	p.Q802H	.	.	55	5	106	1	G|0.990;T|0.010	229
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13612210	13612210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FBLN2	NM_001998	exon2	c.C355T	p.P119S	.	.	108	21	75	0	.	91
FCGBP	8857	bcgsc.ca	37	19	40357683	40357683	+	Silent	SNP	T	T	G	rs759120	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FCGBP	NM_003890	exon34	c.A15630C	p.A5210A	.	.	250	7	208	1	T|0.786;G|0.214	98
FCRLB	127943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161697408	161697408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FCRLB	NM_001002901	exon6	c.G1237A	p.A413T	.	.	123	8	115	0	.	22
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27941376	27941376	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FGR	NM_001042729	exon10	c.G1080T	p.V360V	.	.	147	19	204	0	.	547
FNTA	2339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	42911627	42911627	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FNTA	NM_002027	exon1	c.C138T	p.A46A	.	.	52	14	33	0	.	91
FRAS1	80144	bcgsc.ca	37	4	78987157	78987157	+	Missense_Mutation	SNP	A	A	G	rs4859905	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FRAS1	NM_001166133	exon2	c.A95G	p.D32G	.	.	62	6	85	0	A|0.473;G|0.527	68
FREM2	341640	ucsc.edu;bcgsc.ca	37	13	39430314	39430314	+	Missense_Mutation	SNP	C	C	T	rs9548509	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FREM2	NM_207361	exon12	c.C6977T	p.T2326I	.	.	59	6	79	0	C|0.256;T|0.744	100
FRMD8P1	83957	bcgsc.ca	37	X	64771335	64771335	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	.	.	.	.	.	.	42	15	64	0	.	.
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186673299	186673299	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FSIP2	NM_173651	exon17	c.C19533T	p.V6511V	.	.	98	16	127	0	.	90
FYN	2534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112035597	112035597	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FYN	NM_153047	exon2	c.T297C	p.D99D	.	.	40	5	60	0	.	1000
GABBR1	2550	broad.mit.edu;bcgsc.ca	37	6	29580368	29580368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GABBR1	NM_001470	exon13	c.C1590A	p.S530R	.	.	60	6	46	0	.	521
GIGYF1	64599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100284048	100284048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GIGYF1	NM_022574	exon8	c.C703A	p.P235T	.	.	60	5	50	0	.	136
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121554929	121554929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GLI2	NM_005270	exon1	c.G33T	p.E11D	.	.	68	15	73	0	.	954
GLT8D2	83468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104388181	104388181	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GLT8D2	NM_031302	exon9	c.C699G	p.A233A	.	.	130	18	132	0	.	92
GPR144	347088	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127232800	127232800	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001161808	exon17	c.G2586T	p.L862L	.	.	205	34	120	1	.	.
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123489506	123489506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GRAMD1B	NM_020716	exon18	c.A2007T	p.E669D	.	.	98	16	102	0	.	69
GREB1L	80000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19079942	19079942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001142966	exon22	c.G3644A	p.G1215E	.	.	54	11	60	0	.	.
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10095217	10095217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GRHL1	NM_198182	exon2	c.A194G	p.Y65C	.	.	110	16	132	0	.	92
GRIN3B	116444	hgsc.bcm.edu	37	19	1008745	1008745	+	Silent	SNP	G	G	A	rs79458336	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GRIN3B	NM_138690	exon7	c.G2595A	p.K865K	.	.	10	6	6	0	G|0.995;A|0.005	90
GTPBP4	23560	bcgsc.ca	37	10	1046712	1046712	+	Silent	SNP	G	G	A	rs2306409	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GTPBP4	NM_012341	exon7	c.G750A	p.A250A	.	.	158	6	172	2	G|0.492;N|0.000	92
GUF1	60558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44682735	44682735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GUF1	NM_021927	exon3	c.A302G	p.N101S	.	.	92	20	137	2	.	91
H1F0	3005	hgsc.bcm.edu;broad.mit.edu	37	22	38201683	38201684	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	H1F0	NM_005318	exon1	c.132_133insT	p.G44fs	.	.	110	10	176	0	.	90
HAS1	3036	hgsc.bcm.edu	37	19	52222927	52222927	+	Silent	SNP	G	G	A	rs61753443		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HAS1	NM_001523	exon2	c.C234T	p.H78H	.	.	9	6	0	0	G|0.998;A|0.002	92
HIPK1	204851	broad.mit.edu	37	1	114505036	114505036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HIPK1	NM_198268	exon9	c.G2079T	p.Q693H	.	.	78	14	76	2	.	361
HIST2H2BA	337875	broad.mit.edu;bcgsc.ca	37	1	120906376	120906376	+	RNA	SNP	G	G	A	rs202089113	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	.	.	.	.	.	.	420	61	289	0	G|0.996;A|0.004	.
HOXA3	3200	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	27148273	27148273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HOXA3	NM_030661	exon3	c.A593G	p.Y198C	.	.	55	8	39	0	.	153
HOXD9	3235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	176988265	176988265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HOXD9	NM_014213	exon1	c.G769C	p.E257Q	.	.	70	12	91	0	.	90
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53655712	53655712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HUWE1	NM_031407	exon14	c.G1105A	p.A369T	.	.	97	31	93	1	.	280
IL27	246778	bcgsc.ca	37	16	28515228	28515228	+	Missense_Mutation	SNP	A	A	C	rs17855750	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	IL27	NM_145659	exon2	c.T175G	p.S59A	.	.	90	5	132	1	A|0.939;C|0.061	90
IPP	3652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46165836	46165836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	IPP	NM_001145349	exon9	c.G1557T	p.M519I	.	.	34	6	38	0	.	91
ITGAV	3685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187465066	187465066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ITGAV	NM_001144999	exon1	c.T5C	p.L2P	.	.	49	7	71	0	.	653
ITGB5	3693	bcgsc.ca	37	3	124515509	124515509	+	Silent	SNP	G	G	A	rs2291088	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ITGB5	NM_002213	exon10	c.C1419T	p.S473S	.	.	204	7	196	1	G|0.851;A|0.149	227
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52864633	52864633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ITIH4	NM_001166449	exon1	c.C26T	p.T9I	.	.	134	28	142	1	.	46
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17943612	17943612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	JAK3	NM_000215	exon18	c.C2477T	p.S826L	.	.	198	35	263	0	.	2418
KALRN	8997	bcgsc.ca	37	3	124281844	124281844	+	Missense_Mutation	SNP	C	C	A	rs78202770	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	KALRN	NM_001024660	exon34	c.C5084A	p.P1695Q	.	.	137	6	140	0	C|0.989;A|0.011	738
KCNH1	3756	broad.mit.edu	37	1	211192479	211192479	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	KCNH1	NM_172362	exon6	c.C678G	p.I226M	.	.	162	6	122	0	.	94
KLHL2	11275	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	166149976	166149976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	KLHL2	NM_001161521	exon3	c.A182T	p.D61V	.	.	273	27	372	0	.	226
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112435307	112435307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LAMA4	NM_001105206	exon38	c.G5298C	p.R1766S	.	.	54	8	55	0	.	140
LMAN2L	81562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97405772	97405772	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LMAN2L	NM_030805	exon1	c.G6A	p.A2A	.	.	37	9	22	0	.	90
LOC151174	0	broad.mit.edu	37	2	239134138	239134138	+	RNA	SNP	A	A	C	rs7572392	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	.	.	.	.	.	.	49	3	74	1	A|0.811;C|0.189	.
LOC284100	0	broad.mit.edu	37	17	36233891	36233891	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LOC284100	.	.	.	.	.	.	6	2	22	0	.	136
LOC646498	0	bcgsc.ca	37	3	49215966	49215966	+	Silent	SNP	C	C	T	rs9837625	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001080528	exon3	c.G147A	p.P49P	.	.	111	7	146	1	C|0.904;T|0.096	.
LRRC69	100130742	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92114903	92114903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001129890	exon1	c.T14C	p.L5S	.	.	58	9	48	0	.	.
LTBP2	4053	bcgsc.ca	37	14	75022271	75022271	+	Missense_Mutation	SNP	G	G	T	rs2304707	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LTBP2	NM_000428	exon4	c.C956A	p.P319Q	.	.	107	5	144	0	G|0.911;T|0.089	92
LTF	4057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46492064	46492064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LTF	NM_002343	exon7	c.G803T	p.R268L	.	.	150	25	178	0	.	703
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235973623	235973623	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LYST	NM_000081	exon5	c.C495A	p.T165T	.	.	92	20	83	0	.	143
MAGEA12	4111	bcgsc.ca	37	X	151899913	151899913	+	Silent	SNP	T	T	C	rs2233055	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MAGEA12	NM_005367	exon2	c.A888G	p.G296G	.	.	317	14	365	3	T|0.627;C|0.373	131
MFAP2	4237	hgsc.bcm.edu;bcgsc.ca	37	1	17301519	17301519	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MFAP2	NM_001135248	exon10	c.446-1G>C	.	.	.	114	19	125	0	.	514
MID1IP1	58526	broad.mit.edu;bcgsc.ca	37	X	38664328	38664328	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MID1IP1	NM_021242	exon2	c.G129C	p.L43L	.	.	415	11	349	2	.	130
MLPH	79083	bcgsc.ca	37	2	238427251	238427251	+	Missense_Mutation	SNP	G	G	A	rs3751107	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MLPH	NM_001042467	exon5	c.G515A	p.G172D	.	.	190	7	265	3	G|0.795;A|0.205	91
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24705233	24705233	+	Silent	SNP	C	C	T	rs201576683		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MPP6	NM_016447	exon8	c.C810T	p.S270S	.	.	88	27	99	0	C|0.999;T|0.000	90
MPPED1	758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43870736	43870736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001044370	exon4	c.T527A	p.L176Q	.	.	172	31	222	2	.	.
MROH1	727957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145234383	145234383	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001099280	exon5	c.T194G	p.V65G	.	.	245	62	243	1	.	.
MROH7	374977	bcgsc.ca	37	1	55166842	55166842	+	Silent	SNP	C	C	T	rs1065173	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001039464	exon19	c.C3132T	p.P1044P	.	.	155	6	174	1	C|0.744;T|0.256	.
MUC4	4585	broad.mit.edu	37	3	195506037	195506037	+	Silent	SNP	G	G	T	rs78235075	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MUC4	NM_018406	exon2	c.C12414A	p.S4138S	.	.	46	6	59	1	G|0.535;T|0.465	90
NAALADL1	10004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64820704	64820704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NAALADL1	NM_005468	exon8	c.C1184T	p.T395I	.	.	206	31	191	0	.	90
NAALADL2	254827	bcgsc.ca	37	3	174814738	174814738	+	Missense_Mutation	SNP	G	G	A	rs9823911	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NAALADL2	NM_207015	exon2	c.G202A	p.G68S	.	.	202	6	263	1	G|0.641;A|0.359	47
NCLN	56926	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	3206308	3206308	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NCLN	NM_020170	exon12	c.C1384T	p.Q462X	.	.	109	27	105	0	.	90
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	213	24	323	0	A|0.500;T|0.500	90
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57060281	57060281	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NLRC5	NM_032206	exon5	c.T1426A	p.Y476N	.	.	66	15	94	0	.	159
OR10J5	127385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159504893	159504893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR10J5	NM_001004469	exon1	c.G905C	p.R302T	.	.	52	7	46	0	.	71
OR10K2	391107	ucsc.edu	37	1	158389923	158389923	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR10K2	NM_001004476	exon1	c.T734A	p.L245H	.	.	166	18	223	3	.	69
OR2A2	442361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	143807041	143807041	+	Nonsense_Mutation	SNP	T	T	A	rs201869620	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR2A2	NM_001005480	exon1	c.T366A	p.Y122X	.	.	159	21	143	0	T|0.999;C|0.001	92
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661048	4661048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR51D1	NM_001004751	exon1	c.A28G	p.I10V	.	.	50	8	79	0	.	68
OR51T1	401665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4903313	4903313	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR51T1	NM_001004759	exon1	c.T265A	p.Y89N	.	.	79	16	97	0	.	115
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97868812	97868812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR5H14	NM_001005514	exon1	c.A583T	p.N195Y	.	.	52	15	62	0	.	91
OTUB1	55611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63755856	63755856	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OTUB1	NM_017670	exon2	c.C106A	p.R36R	.	.	82	13	113	1	.	501
P2RX7	5027	bcgsc.ca	37	12	121615103	121615103	+	Missense_Mutation	SNP	G	G	A	rs1718119	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	P2RX7	NM_002562	exon11	c.G1042A	p.A348T	.	.	108	6	127	1	G|0.628;N|0.001	268
PALB2	79728	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23646654	23646654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PALB2	NM_024675	exon4	c.C1213A	p.P405T	.	.	25	5	36	0	.	1351
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182464	140182464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PCDHA3	NM_031497	exon1	c.A1682G	p.N561S	.	.	133	14	41	0	.	98
PDLIM3	27295	broad.mit.edu;bcgsc.ca	37	4	186446243	186446247	+	Frame_Shift_Del	DEL	GACTC	GACTC	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	GACTC	GACTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PDLIM3	NM_001257962	exon2	c.172_176del	p.58_59del	.	.	73	8	108	0	.	92
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58322830	58322830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PHACTR3	NM_080672	exon3	c.G298T	p.A100S	.	.	103	15	183	0	.	93
PKD1L1	168507	bcgsc.ca	37	7	47921682	47921682	+	Silent	SNP	A	A	T	rs10951936	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PKD1L1	NM_138295	exon20	c.T3267A	p.A1089A	.	.	137	6	167	1	A|0.721;T|0.279	145
PKN2	5586	bcgsc.ca	37	1	89225976	89225976	+	Silent	SNP	T	T	C	rs430600	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PKN2	NM_006256	exon3	c.T421C	p.L141L	.	.	105	6	166	0	T|0.279;C|0.721	522
PNPLA7	375775	bcgsc.ca	37	9	140414410	140414410	+	Missense_Mutation	SNP	C	C	T	rs11137410	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PNPLA7	NM_001098537	exon11	c.G1043A	p.R348Q	.	.	67	4	89	0	C|0.855;T|0.145	91
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114380848	114380848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PTPN22	NM_015967	exon13	c.G1174A	p.D392N	.	.	52	8	53	0	.	227
PYGB	5834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25261588	25261588	+	Missense_Mutation	SNP	G	G	A	rs201813153		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PYGB	NM_002862	exon11	c.G1243A	p.V415M	.	.	169	24	173	0	.	91
RAB3IP	117177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70206599	70206599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RAB3IP	NM_175623	exon9	c.G1220A	p.R407K	.	.	75	13	116	0	.	227
RARS	5917	ucsc.edu;bcgsc.ca	37	5	167919726	167919726	+	Silent	SNP	A	A	G	rs2305727	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RARS	NM_002887	exon3	c.A243G	p.Q81Q	.	.	39	4	61	0	A|0.881;G|0.119	93
RCBTB1	55213	bcgsc.ca	37	13	50123622	50123622	+	Silent	SNP	G	G	C	rs3751384	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RCBTB1	NM_018191	exon9	c.C1017G	p.P339P	.	.	184	9	203	2	G|0.473;C|0.527	91
RGPD3	653489	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	107041399	107041399	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RGPD3	NM_001144013	exon20	c.C3024T	p.Y1008Y	.	.	95	11	105	1	.	23
RSPH1	89765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43896039	43896039	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RSPH1	NM_080860	exon8	c.C846T	p.D282D	.	.	104	24	114	0	.	227
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39071081	39071081	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RYR1	NM_000540	exon101	c.C14583T	p.R4861R	.	.	264	46	246	0	.	100
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237778097	237778097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RYR2	NM_001035	exon37	c.A5669C	p.K1890T	.	.	156	30	185	0	.	158
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4285345	4285345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SDK1	NM_152744	exon44	c.T6289C	p.S2097P	.	.	140	17	157	0	.	138
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18505223	18505223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SEC23B	NM_032985	exon5	c.G513C	p.R171S	.	.	99	17	153	0	.	91
SLC2A4	6517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7187403	7187403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SLC2A4	NM_001042	exon5	c.G559T	p.A187S	.	.	58	10	86	0	.	90
SLC39A14	23516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22273745	22273745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SLC39A14	NM_001135153	exon7	c.A1099G	p.I367V	.	.	147	23	140	0	.	90
SLC52A3	113278	bcgsc.ca	37	20	746098	746098	+	Silent	SNP	G	G	A	rs3746808	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_033409	exon2	c.C321T	p.A107A	.	.	257	8	262	3	G|0.754;A|0.246	.
SLC6A3	6531	bcgsc.ca	37	5	1411412	1411412	+	Silent	SNP	T	T	C	rs6347	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SLC6A3	NM_001044	exon9	c.A1215G	p.S405S	.	.	142	6	152	0	T|0.671;C|0.329	157
SLC7A6OS	84138	bcgsc.ca	37	16	68344696	68344696	+	Missense_Mutation	SNP	C	C	T	rs3803650	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SLC7A6OS	NM_032178	exon1	c.G134A	p.G45D	.	.	201	7	213	2	C|0.334;T|0.666	91
SMG1	23049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	18853630	18853630	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SMG1	NM_015092	exon40	c.T6366C	p.H2122H	.	.	87	26	115	1	.	1160
SP110	3431	bcgsc.ca	37	2	231077110	231077110	+	Missense_Mutation	SNP	C	C	T	rs9061	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SP110	NM_001185015	exon6	c.G637A	p.E213K	.	.	116	6	149	0	C|0.895;T|0.105	155
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49919817	49919817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SPATS2	NM_023071	exon14	c.A1417G	p.M473V	.	.	231	49	309	0	.	135
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35704679	35704679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SPEF2	NM_024867	exon17	c.G2422A	p.A808T	.	.	40	7	63	0	.	26
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	130	32	117	0	A|0.000;C|0.697;T|0.303	45
STARD7	56910	bcgsc.ca	37	2	96861159	96861159	+	Missense_Mutation	SNP	C	C	G	rs2276650	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	STARD7	NM_020151	exon2	c.G419C	p.R140P	.	.	138	9	129	0	C|0.681;G|0.319	68
STK31	56164	broad.mit.edu	37	7	23809272	23809272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	STK31	NM_031414	exon13	c.C1610T	p.S537F	.	.	26	3	42	0	.	338
THAP7	80764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21354333	21354333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	THAP7	NM_030573	exon4	c.C766T	p.R256C	.	.	122	23	92	0	.	278
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	93558647	93558647	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TNKS2	NM_025235	exon1	c.199+1G>T	.	.	.	75	12	67	0	.	541
TNN	63923	bcgsc.ca	37	1	175054548	175054548	+	Silent	SNP	C	C	T	rs1573758	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TNN	NM_022093	exon6	c.C1242T	p.H414H	.	.	127	8	131	1	C|0.449;T|0.551	138
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7576633	7576633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TP53	NM_001126114	exon10	c.A1018G	p.N340D	.	.	42	16	109	0	.	70225
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	231344856	231344857	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TRIM67	NM_001004342	exon8	c.1983_1984insA	p.D661fs	.	.	274	84	246	0	.	229
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122853884	122853884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TRPC3	NM_001130698	exon2	c.G529A	p.D177N	.	.	132	28	152	0	.	92
TSC2	7249	hgsc.bcm.edu;bcgsc.ca	37	16	2136306	2136311	+	In_Frame_Del	DEL	TGTACC	TGTACC	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	TGTACC	TGTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TSC2	NM_000548	exon37	c.4775_4780del	p.1592_1594del	.	.	158	20	241	0	.	1908
TTC24	164118	bcgsc.ca;mdanderson.org	37	1	156551495	156551495	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TTC24	NM_001105669	exon2	c.C339T	p.G113G	.	.	172	18	182	1	.	46
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28494971	28494971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001145418	exon10	c.A3479G	p.Y1160C	.	.	245	25	204	0	.	.
TTN	7273	bcgsc.ca	37	2	179421694	179421694	+	Missense_Mutation	SNP	A	A	G	rs9808377	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TTN	NM_001267550	exon330	c.T88187C	p.I29396T	.	.	101	6	98	0	A|0.549;G|0.451	636
TUBA3D	113457	ucsc.edu;bcgsc.ca	37	2	132238309	132238309	+	Missense_Mutation	SNP	C	C	A	rs200206202	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBA3D	NM_080386	exon4	c.C1043A	p.P348Q	.	.	132	18	164	2	C|0.999;T|0.000	44
TUBE1	51175	hgsc.bcm.edu;bcgsc.ca	37	6	112408489	112408489	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBE1	NM_016262	exon2	c.A46T	p.I16F	.	.	280	31	336	0	.	91
TUBE1	51175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112408473	112408484	+	In_Frame_Del	DEL	CAGAAGCAGCAG	CAGAAGCAGCAG	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	CAGAAGCAGCAG	CAGAAGCAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBE1	NM_016262	exon2	c.51_62del	p.17_21del	.	.	261	22	307	0	.	91
UCP3	7352	bcgsc.ca	37	11	73717254	73717254	+	Silent	SNP	A	A	G	rs1800006	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	UCP3	NM_003356	exon3	c.T297C	p.Y99Y	.	.	106	7	104	2	A|0.651;G|0.349	91
USP16	10600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30419571	30419571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	USP16	NM_006447	exon14	c.G1940T	p.R647L	.	.	68	9	106	1	.	659
VPS41	27072	ucsc.edu	37	7	38796570	38796570	+	Silent	SNP	G	G	A	rs2240350	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	VPS41	NM_014396	exon19	c.C1563T	p.D521D	.	.	39	4	49	0	G|0.643;A|0.357	93
WDFY4	57705	bcgsc.ca	37	10	50038878	50038878	+	Missense_Mutation	SNP	G	G	C	rs41283281	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	WDFY4	NM_020945	exon38	c.G6474C	p.E2158D	.	.	398	10	351	3	G|0.955;C|0.045	22
WDR49	151790	broad.mit.edu;bcgsc.ca	37	3	167272493	167272493	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	WDR49	NM_178824	exon6	c.745delA	p.I249fs	.	.	24	9	40	0	.	155
WT1-AS	51352	broad.mit.edu	37	11	32460873	32460873	+	RNA	SNP	C	C	T	rs7943101	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	WT1-AS	.	.	.	.	.	.	52	6	45	1	C|0.849;T|0.151	68
ZACN	353174	bcgsc.ca	37	17	74076415	74076415	+	Missense_Mutation	SNP	G	G	A	rs2257020	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZACN	NM_180990	exon5	c.G454A	p.A152T	.	.	178	7	163	0	G|0.403;A|0.597	90
ZFAT	57623	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	135613836	135613836	+	Missense_Mutation	SNP	C	C	A	rs201041569	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFAT	NM_020863	exon6	c.G2126T	p.R709L	.	.	183	33	162	1	C|0.999;T|0.001	90
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77767616	77767616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFHX4	NM_024721	exon10	c.A8459C	p.N2820T	.	.	43	11	82	0	.	98
ZFPM2	23414	broad.mit.edu;ucsc.edu	37	8	106813669	106813669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFPM2	NM_012082	exon8	c.A1359T	p.R453S	.	.	39	4	44	0	.	139
ZNF227	7770	ucsc.edu;bcgsc.ca	37	19	44739303	44739303	+	Silent	SNP	T	T	C	rs2279073	byfrequency	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZNF227	NM_182490	exon6	c.T720C	p.N240N	.	.	38	4	28	0	T|0.587;C|0.413	91
