Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADAC	13	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151545468	151545468	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AADAC	NM_001086	exon5	c.A708G	p.S236S	.	.	122	21	111	0	.	280
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79100253	79100253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AATK	NM_001080395	exon7	c.C729A	p.H243Q	.	.	90	14	68	0	.	933
ACVR2B	93	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38519668	38519668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ACVR2B	NM_001106	exon4	c.T407C	p.L136P	.	.	42	8	28	0	.	942
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167849404	167849404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ADCY10	NM_018417	exon11	c.G1165A	p.G389R	.	.	144	18	103	0	.	493
ADSL	158	hgsc.bcm.edu;mdanderson.org	37	22	40742563	40742563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ADSL	NM_001123378	exon1	c.A1G	p.M1V	.	.	27	7	9	0	.	652
APOB	338	ucsc.edu	37	2	21229859	21229859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	APOB	NM_000384	exon26	c.C9881A	p.S3294X	.	.	167	20	141	3	.	175
AR	367	bcgsc.ca	37	X	66765516	66765516	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AR	NM_000044	exon1	c.C528T	p.S176S	.	.	79	13	51	0	.	661
AR	367	hgsc.bcm.edu	37	X	66765514	66765515	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AR	NM_000044	exon1	c.526_527del	p.176_176del	.	.	78	13	55	0	.	661
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27101142	27101142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ARID1A	NM_006015	exon18	c.A4424C	p.N1475T	.	.	57	11	38	0	.	584
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176999968	176999968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ASTN1	NM_004319	exon4	c.G986A	p.R329K	.	.	84	15	79	0	.	319
ATF5	22809	broad.mit.edu	37	19	50435872	50435872	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ATF5	NM_012068	exon4	c.A372C	p.P124P	.	.	61	26	38	11	.	92
ATP1A1OS	84852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116948480	116948480	+	RNA	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	.	.	.	69	9	55	0	.	.
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34014331	34014331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	BMPER	NM_133468	exon7	c.G511A	p.V171M	.	.	129	14	127	0	.	92
C1orf61	10485	broad.mit.edu	37	1	156374391	156374391	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	C1orf61	NM_006365	exon7	c.C426A	p.T142T	.	.	262	5	176	1	.	91
C4orf21	55345	broad.mit.edu	37	4	113468466	113468466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	C4orf21	NM_018392	exon24	c.C5573A	p.T1858N	.	.	131	5	102	1	.	90
CAMK1D	57118	bcgsc.ca	37	10	12391854	12391854	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CAMK1D	NM_153498	exon1	c.37delA	p.K13fs	.	.	221	39	142	1	.	334
CCT6P1	643253	broad.mit.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	.	.	.	150	9	110	1	.	.
CDC27	996	broad.mit.edu	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CDC27	NM_001114091	exon6	c.G601A	p.V201I	.	.	152	10	119	1	.	291
CDS1	1040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85540553	85540553	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CDS1	NM_001263	exon5	c.T447C	p.F149F	.	.	106	13	93	0	.	155
CENPF	1063	bcgsc.ca	37	1	214819975	214819975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CENPF	NM_016343	exon13	c.T7062A	p.H2354Q	.	.	262	79	208	6	.	567
CHD4	1108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6690892	6690892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CHD4	NM_001273	exon31	c.C4604T	p.S1535L	.	.	116	23	71	1	.	228
CHST15	51363	ucsc.edu	37	10	125804199	125804199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CHST15	NM_001270764	exon3	c.G783T	p.Q261H	.	.	40	5	28	1	.	91
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	49853423	49853444	+	Frame_Shift_Del	DEL	AATGGAACAGCTGGCTTATTAC	AATGGAACAGCTGGCTTATTAC	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	AATGGAACAGCTGGCTTATTAC	AATGGAACAGCTGGCTTATTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CLCN5	NM_001127898	exon12	c.1626_1647del	p.542_549del	.	.	93	10	123	0	.	132
CLDN5	7122	mdanderson.org	37	22	19511463	19511463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CLDN5	NM_001130861	exon1	c.A571G	p.T191A	.	.	36	6	32	1	.	492
CSMD1	64478	broad.mit.edu	37	8	2800063	2800063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CSMD1	NM_033225	exon69	c.C10466T	p.A3489V	.	.	70	4	60	0	.	86
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	114031312	114031312	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CSMD3	NM_052900	exon6	c.T1014C	p.F338F	.	.	97	6	63	0	.	1132
CTTNBP2	83992	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117398014	117398014	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CTTNBP2	NM_033427	exon11	c.G3183A	p.P1061P	.	.	44	5	39	0	.	94
DEPDC1	55635	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	68954709	68954709	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DEPDC1	NM_017779	exon4	c.C480T	p.G160G	.	.	277	39	218	2	.	90
DIEXF	27042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210015748	210015748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DIEXF	NM_014388	exon9	c.A1624G	p.I542V	.	.	115	15	53	0	.	91
DPF1	8193	broad.mit.edu;mdanderson.org	37	19	38713010	38713010	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DPF1	NM_001135155	exon3	c.C366T	p.C122C	.	.	77	13	45	1	.	90
EPS15L1	58513	broad.mit.edu;mdanderson.org	37	19	16545246	16545246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	EPS15L1	NM_021235	exon7	c.G428T	p.G143V	.	.	73	9	56	1	.	95
EXOC6	54536	broad.mit.edu	37	10	94700522	94700522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	EXOC6	NM_019053	exon13	c.A1251T	p.L417F	.	.	91	10	78	6	.	91
EYA4	2070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133846297	133846297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	EYA4	NM_004100	exon19	c.G1744A	p.E582K	.	.	254	45	175	1	.	578
FAM186A	121006	broad.mit.edu	37	12	50746140	50746140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	FAM186A	NM_001145475	exon4	c.G4475A	p.G1492E	.	.	148	6	108	1	.	68
FBXL19	54620	hgsc.bcm.edu	37	16	30938694	30938694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	FBXL19	NM_001099784	exon3	c.G303T	p.E101D	.	.	71	4	64	0	.	661
FBXO15	201456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	71749184	71749184	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	FBXO15	NM_001142958	exon9	c.A1241T	p.D414V	.	.	236	31	194	1	.	229
FILIP1	27145	hgsc.bcm.edu	37	6	76023702	76023702	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	FILIP1	NM_015687	exon5	c.C1846T	p.R616X	.	.	97	4	73	0	.	94
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154311018	154311018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	GEMIN5	NM_015465	exon5	c.G781A	p.G261R	.	.	91	27	53	0	.	228
GSPT1	2935	broad.mit.edu;bcgsc.ca	37	16	12009287	12009287	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	GSPT1	NM_001130006	exon1	c.A291C	p.P97P	.	.	96	18	75	16	.	206
GYPB	2994	broad.mit.edu	37	4	144920581	144920581	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	GYPB	NM_002100	exon3	c.A158T	p.H53L	.	.	649	8	548	0	.	515
HECTD4	283450	broad.mit.edu	37	12	112654889	112654889	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_001109662	exon46	c.A6783G	p.G2261G	.	.	211	5	155	3	.	.
IL23A	51561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56733526	56733526	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	IL23A	NM_016584	exon3	c.G313C	p.G105R	.	.	56	18	57	1	.	90
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15452356	15452356	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	JARID2	NM_004973	exon4	c.C443G	p.S148C	.	.	71	21	55	0	.	228
KCNAB2	8514	broad.mit.edu	37	1	6133803	6133803	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KCNAB2	NM_001199862	exon4	c.G273A	p.V91V	.	.	51	16	47	2	.	514
KCTD21	283219	broad.mit.edu;mdanderson.org	37	11	77885144	77885144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KCTD21	NM_001029859	exon2	c.T457G	p.C153G	.	.	37	8	44	2	.	69
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610300	10610300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KEAP1	NM_012289	exon2	c.T410C	p.I137T	.	.	53	5	41	0	.	637
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73960186	73960186	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KIAA2022	NM_001008537	exon3	c.T4206C	p.N1402N	.	.	76	14	39	0	.	183
KLC4	89953	ucsc.edu	37	6	43034260	43034260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KLC4	NM_201523	exon5	c.A842G	p.Y281C	.	.	43	4	22	0	.	94
KRT13	3860	broad.mit.edu	37	17	39659628	39659628	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KRT13	NM_002274	exon3	c.G646C	p.D216H	.	.	44	4	35	0	.	95
KRTAP4-8	728224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_031960	exon1	c.T283A	p.C95S	.	.	46	5	32	0	A|0.500;T|0.500	.
LCE1A	353131	mdanderson.org	37	1	152800128	152800128	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	LCE1A	NM_178348	exon1	c.C180T	p.C60C	.	.	130	21	82	2	.	70
LOC100129138	0	bcgsc.ca	37	1	104615697	104615697	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	.	.	.	49	10	23	0	.	.
LOC407835	0	bcgsc.ca	37	7	128766636	128766636	+	RNA	SNP	C	C	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	.	.	.	50	9	34	0	.	.
LRIT1	26103	broad.mit.edu	37	10	85997395	85997395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	LRIT1	NM_015613	exon2	c.T170C	p.I57T	.	.	25	3	21	0	.	90
LRRC58	116064	broad.mit.edu	37	3	120067685	120067685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_001099678	exon1	c.C406T	p.P136S	.	.	84	4	48	0	.	.
MED23	9439	broad.mit.edu;ucsc.edu	37	6	131924170	131924170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MED23	NM_015979	exon17	c.G1949A	p.C650Y	.	.	89	16	71	1	.	24
MRGBP	55257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61429990	61429990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_018270	exon3	c.C322A	p.P108T	.	.	109	20	82	1	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195511994	195511994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MUC4	NM_018406	exon2	c.G6457C	p.V2153L	.	.	75	8	70	0	.	90
MUC5B	727897	broad.mit.edu	37	11	1267480	1267480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_002458	exon31	c.A9370C	p.T3124P	.	.	176	17	136	10	.	.
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102076403	102076403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MYBPC1	NM_002465	exon30	c.C3455T	p.T1152I	.	.	144	31	99	0	.	94
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10395803	10395803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MYH1	NM_005963	exon40	c.C5750T	p.A1917V	.	.	124	20	75	0	.	171
NADSYN1	55191	ucsc.edu	37	11	71212375	71212375	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	NADSYN1	NM_018161	exon21	c.C2098T	p.Q700X	.	.	25	2	30	0	.	92
OR2AG2	338755	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	6789560	6789560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	OR2AG2	NM_001004490	exon1	c.C629T	p.P210L	.	.	59	7	65	1	.	71
OR2T2	401992	broad.mit.edu;bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	rs199823862		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	TGCTGCG	TGCTGCG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	OR2T2	NM_001004136	exon1	c.607_613del	p.203_205del	.	.	294	7	246	0	.	23
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	29598311	29598311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	OVCH1	NM_183378	exon23	c.C2781A	p.Y927X	.	.	91	14	55	0	.	210
PAK2	5062	bcgsc.ca	37	3	196529926	196529926	+	Silent	SNP	C	C	A	rs77470308	byfrequency	TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PAK2	NM_002577	exon4	c.C327A	p.S109S	.	.	84	16	89	1	C|0.947;A|0.053	957
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140792839	140792839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_032090	exon1	c.C97T	p.R33W	.	.	81	17	64	0	.	.
PGGT1B	5229	bcgsc.ca	37	5	114557604	114557604	+	Missense_Mutation	SNP	T	T	C	rs75945684	alternate_allele	TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PGGT1B	NM_005023	exon7	c.A760G	p.M254V	.	.	439	58	378	5	T|0.500;G|0.500	90
PHLPP2	23035	broad.mit.edu	37	16	71682851	71682851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PHLPP2	NM_015020	exon18	c.C3914A	p.P1305H	.	.	44	10	48	1	.	91
PITPNM1	9600	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	67261260	67261260	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PITPNM1	NM_004910	exon21	c.C3057A	p.G1019G	.	.	59	9	58	0	.	227
PKD1L1	168507	ucsc.edu	37	7	47988020	47988020	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PKD1L1	NM_138295	exon1	c.C18A	p.A6A	.	.	25	4	44	1	.	145
PRRC2C	23215	broad.mit.edu	37	1	171526999	171526999	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_015172	exon19	c.A5742C	p.P1914P	.	.	98	12	58	3	.	.
PSMD6	9861	broad.mit.edu	37	3	64005107	64005107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PSMD6	NM_001271779	exon4	c.T521A	p.L174Q	.	.	92	19	84	1	.	91
PTGER4P2-CDK2AP2P2	442421	bcgsc.ca	37	9	66500810	66500810	+	RNA	SNP	G	G	A	rs201331241		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	.	.	.	21	5	20	0	.	.
PTPRQ	374462	broad.mit.edu	37	12	80928703	80928703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_001145026	exon16	c.G2356T	p.A786S	.	.	233	4	177	0	.	.
PUS7	54517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105121549	105121549	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PUS7	NM_019042	exon9	c.T1125C	p.Y375Y	.	.	122	24	98	0	.	90
RPAP1	26015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41816168	41816168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RPAP1	NM_015540	exon17	c.A2237G	p.D746G	.	.	59	8	44	0	.	153
RUNX1T1	862	ucsc.edu;mdanderson.org	37	8	92998419	92998419	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RUNX1T1	NM_001198679	exon9	c.A1389G	p.K463K	.	.	82	11	93	2	.	1196
RUNX2	860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	45390432	45390432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RUNX2	NM_001024630	exon3	c.A161C	p.Q54P	.	.	73	11	58	0	.	417
SALL1	6299	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	51173574	51173574	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SALL1	NM_002968	exon2	c.T2559G	p.S853S	.	.	69	10	76	1	.	98
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133997208	133997208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SEC24A	NM_001252231	exon2	c.G497T	p.S166I	.	.	113	15	93	0	.	68
SHCBP1L	81626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182922155	182922155	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SHCBP1L	NM_030933	exon1	c.114delC	p.T38fs	.	.	64	14	45	0	.	91
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62782428	62782428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SLC22A8	NM_001184732	exon2	c.G3A	p.M1I	.	.	39	11	28	0	.	93
SLC25A51P1	442229	ucsc.edu;bcgsc.ca	37	6	66498920	66498920	+	RNA	SNP	C	C	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	.	.	.	229	46	211	5	.	.
SLC26A10	65012	ucsc.edu	37	12	58019390	58019390	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SLC26A10	NM_133489	exon14	c.G1554T	p.R518R	.	.	47	4	40	0	.	531
SLC4A5	57835	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74482906	74482906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SLC4A5	NM_021196	exon8	c.A1021T	p.T341S	.	.	38	9	32	0	.	98
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	RNA	SNP	T	T	C	rs79284655	byfrequency	TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	.	.	.	60	4	52	1	T|0.993;C|0.007	.
SP7	121340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53722106	53722106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_152860	exon2	c.C1120T	p.R374C	.	.	45	18	39	0	.	.
SPG7	6687	hgsc.bcm.edu;mdanderson.org	37	16	89574985	89574985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SPG7	NM_199367	exon1	c.G160A	p.E54K	.	.	34	6	16	0	.	226
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65241980	65241980	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SPTB	NM_001024858	exon22	c.C4705T	p.L1569L	.	.	45	9	35	0	.	100
TMEM218	219854	broad.mit.edu	37	11	124971137	124971137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	TMEM218	NM_001258243	exon5	c.C278T	p.P93L	.	.	85	4	59	0	.	68
TNKS	8658	broad.mit.edu	37	8	9562175	9562175	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	TNKS	NM_003747	exon6	c.G1110T	p.S370S	.	.	59	3	56	0	.	660
TRIM13	10206	hgsc.bcm.edu	37	13	50589220	50589254	+	RNA	DEL	AAAAAAAAAAAATATATATATATATATATATATAT	AAAAAAAAAAAATATATATATATATATATATATAT	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	AAAAAAAAAAAATATATATATATATATATATATAT	AAAAAAAAAAAATATATATATATATATATATATAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	TRIM13	.	.	.	.	.	.	23	14	17	0	.	228
TST	7263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37414605	37414605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	TST	NM_003312	exon2	c.T169C	p.S57P	.	.	40	4	41	0	.	90
USP40	55230	broad.mit.edu;bcgsc.ca	37	2	234442314	234442314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	USP40	NM_018218	exon10	c.C1315A	p.Q439K	.	.	79	5	101	0	.	455
WEE1	7465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9597784	9597784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	WEE1	NM_003390	exon3	c.G790A	p.G264S	.	.	149	21	143	0	.	1404
XKR6	286046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10782237	10782237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	XKR6	NM_173683	exon2	c.C868A	p.L290M	.	.	44	10	27	0	.	92
YIPF7	285525	ucsc.edu;bcgsc.ca	37	4	44626734	44626734	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_182592	exon5	c.C564T	p.A188A	.	.	217	48	166	2	.	.
ZNF197	10168	broad.mit.edu	37	3	44673680	44673680	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ZNF197	NM_001024855	exon4	c.C634T	p.Q212X	.	.	51	7	49	1	.	230
ZNF285	26974	hgsc.bcm.edu;bcgsc.ca	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	rs77661661		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ZNF285	NM_152354	exon4	c.C1364A	p.P455Q	.	.	83	8	77	0	.	94
ZNF630	57232	broad.mit.edu;bcgsc.ca	37	X	47919574	47919574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ZNF630	NM_001037735	exon5	c.A257T	p.E86V	.	.	78	16	78	2	.	131
ZNF839	55778	broad.mit.edu;ucsc.edu	37	14	102807765	102807765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ZNF839	NM_018335	exon8	c.T2033G	p.L678R	.	.	86	15	66	1	.	91
TRIM73	375593	bcgsc.ca	37	7	75028240	75028241	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	p.L8P	.	.	.	.	.	.	.	
