Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	broad.mit.edu;bcgsc.ca	37	17	67215882	67215882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ABCA10	NM_080282	exon7	c.T334C	p.L112L	.	.	192	6	249	0	.	93
ADAMTS10	81794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8651245	8651245	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ADAMTS10	NM_030957	exon21	c.C2513G	p.S838W	.	.	144	39	122	0	.	229
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86273887	86273887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AKAP13	NM_006738	exon30	c.A7243G	p.T2415A	.	.	73	15	75	0	.	258
AKD1	221264	broad.mit.edu;bcgsc.ca	37	6	109962768	109962768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AKD1	NM_145025	exon10	c.A886G	p.T296A	.	.	129	5	143	0	.	91
ALDOA	226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30080632	30080632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ALDOA	NM_001243177	exon7	c.C708T	p.G236G	.	.	60	18	96	0	.	226
AMZ2	51321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66252013	66252013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AMZ2	NM_001033572	exon7	c.A923G	p.Y308C	.	.	42	10	49	0	.	22
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114279036	114279036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ANK2	NM_001148	exon38	c.C9262G	p.P3088A	.	.	52	15	80	0	.	583
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92027849	92027849	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ANKIB1	NM_019004	exon20	c.A2856G	p.S952S	.	.	121	15	97	0	.	432
AQP7	364	bcgsc.ca	37	9	33385733	33385733	+	Missense_Mutation	SNP	C	C	T	rs201117022		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AQP7	NM_001170	exon7	c.G657A	p.M219I	.	.	52	10	64	0	C|0.996;T|0.004	90
AQR	9716	broad.mit.edu	37	15	35224551	35224551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AQR	NM_014691	exon11	c.C868A	p.R290S	.	.	155	3	143	0	.	135
AR	367	hgsc.bcm.edu	37	X	66766356	66766356	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AR	NM_000044	exon1	c.T1368C	p.G456G	.	.	31	3	9	0	.	661
ARHGEF37	389337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	149003635	149003635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARHGEF37	NM_001001669	exon10	c.C1396T	p.R466W	.	.	66	4	48	0	.	90
ARID1B	57492	broad.mit.edu	37	6	157100005	157100005	+	Silent	SNP	C	C	A	rs184815562	by1000genomes	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARID1B	NM_017519	exon1	c.C942A	p.G314G	.	.	55	5	54	1	C|0.945;A|0.055	154
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	63850753	63850753	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARID5B	NM_032199	exon10	c.A1531T	p.R511X	.	.	150	16	168	0	.	94
ARIH1	25820	broad.mit.edu	37	15	72767235	72767235	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARIH1	NM_005744	exon1	c.C255T	p.G85G	.	.	135	6	53	1	.	226
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232079712	232079712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARMC9	NM_025139	exon4	c.C346T	p.P116S	.	.	127	34	126	0	.	91
ATG10	83734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	81474399	81474399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATG10	NM_001131028	exon6	c.C446T	p.T149M	.	.	161	11	126	0	.	90
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108114704	108114704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATM	NM_000051	exon6	c.T521G	p.L174R	.	.	288	67	287	0	.	3419
ATP2B4	493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203678582	203678582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP2B4	NM_001001396	exon11	c.G1711C	p.V571L	.	.	244	35	149	2	.	517
ATP6V1A	523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	113513944	113513952	+	In_Frame_Del	DEL	ATATCCAGC	ATATCCAGC	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	ATATCCAGC	ATATCCAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP6V1A	NM_001690	exon10	c.1119_1127del	p.373_376del	.	.	96	15	106	0	.	93
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	52542657	52542657	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP7B	NM_000053	exon4	c.C1630G	p.Q544E	.	.	98	10	106	0	.	92
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1796715	1796715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_138813	exon16	c.G1748A	p.R583H	.	.	83	18	87	0	.	.
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79428710	79428710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BAHCC1	.	.	.	.	.	.	128	29	154	0	.	23
BCL11B	64919	broad.mit.edu	37	14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	.	.	22	3	14	0	.	1147
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45260419	45260419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BCL3	NM_005178	exon4	c.G665A	p.R222Q	.	.	49	5	39	0	.	848
BIRC6	57448	broad.mit.edu	37	2	32582399	32582399	+	Missense_Mutation	SNP	T	T	G	rs200662235		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BIRC6	NM_016252	exon1	c.T170G	p.V57G	.	.	59	20	46	9	.	233
BLM	641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91347543	91347543	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BLM	NM_000057	exon19	c.C3705A	p.V1235V	.	.	188	41	173	0	.	664
BOC	91653	broad.mit.edu	37	3	112991951	112991951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BOC	NM_033254	exon8	c.G997A	p.V333I	.	.	108	4	142	0	.	157
BZRAP1	9256	broad.mit.edu	37	17	56402254	56402254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BZRAP1	NM_004758	exon5	c.C860T	p.T287M	.	.	40	3	43	0	.	229
C16orf96	342346	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4606653	4606653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_001145011	exon1	c.A163G	p.T55A	.	.	50	10	66	1	.	.
C2CD2	25966	broad.mit.edu;bcgsc.ca	37	21	43309317	43309317	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	C2CD2	NM_015500	exon14	c.C2007A	p.L669L	.	.	100	5	100	1	.	91
C4orf48	401115	hgsc.bcm.edu	37	4	2044128	2044128	+	Missense_Mutation	SNP	C	C	T	rs570712		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_001168243	exon2	c.C149T	p.P50L	.	.	5	5	0	0	C|0.139;T|0.861	.
C6orf62	81688	hgsc.bcm.edu;bcgsc.ca	37	6	24718827	24718828	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	C6orf62	NM_030939	exon1	c.70_71insA	p.E24fs	.	.	133	16	173	0	.	90
C8orf82	414919	hgsc.bcm.edu	37	8	145752900	145752900	+	Silent	SNP	C	C	T	rs11557085		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	C8orf82	NM_001001795	exon3	c.G477A	p.P159P	.	.	8	5	0	0	C|0.601;T|0.399	44
C9orf9	11092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135763682	135763682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	C9orf9	NM_018956	exon4	c.C353G	p.P118R	.	.	148	32	142	0	.	90
CAMK2A	815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	149631366	149631366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CAMK2A	NM_171825	exon9	c.T640C	p.W214R	.	.	171	9	162	0	.	333
CAPZA1	829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113192072	113192072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CAPZA1	NM_006135	exon3	c.C136G	p.L46V	.	.	105	25	132	0	.	514
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CCDC102A	NM_033212	exon2	c.C286T	p.R96W	.	.	9	9	0	0	G|0.001;A|0.999	91
CCDC111	201973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185606652	185606652	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CCDC111	NM_152683	exon10	c.G1186T	p.G396X	.	.	237	75	333	0	.	90
CCDC84	338657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118869172	118869172	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CCDC84	NM_198489	exon2	c.T153G	p.A51A	.	.	45	7	58	0	.	91
CDH15	1013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89258218	89258218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CDH15	NM_004933	exon10	c.C1531T	p.P511S	.	.	47	10	49	0	.	523
CEBPA	1050	hgsc.bcm.edu	37	19	33792631	33792631	+	Silent	SNP	C	C	A	rs34529039	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CEBPA	NM_004364	exon1	c.G690T	p.T230T	.	.	20	11	3	0	C|0.848;A|0.152	7558
CENPF	1063	broad.mit.edu	37	1	214819352	214819352	+	Missense_Mutation	SNP	C	C	T	rs150719864		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CENPF	NM_016343	exon13	c.C6439T	p.R2147W	.	.	345	6	282	0	C|1.000;T|0.000	567
CERS2	29956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150939260	150939260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_022075	exon9	c.A820G	p.I274V	.	.	114	7	90	0	.	.
CHPF2	54480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150935740	150935740	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CHPF2	NM_019015	exon4	c.T2292A	p.F764L	.	.	61	6	48	0	.	91
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	129520172	129520172	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CHSY3	NM_175856	exon3	c.T1337A	p.L446Q	.	.	172	7	178	0	.	25
CLDN7	1366	broad.mit.edu	37	17	7164142	7164142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CLDN7	NM_001185023	exon2	c.C386A	p.A129E	.	.	65	3	87	0	.	91
CLEC3B	7123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	45077344	45077344	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CLEC3B	NM_003278	exon3	c.G537A	p.A179A	.	.	85	14	76	0	.	90
CLGN	1047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	141313515	141313531	+	Frame_Shift_Del	DEL	TGTATCTTTATGTTTTT	TGTATCTTTATGTTTTT	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	TGTATCTTTATGTTTTT	TGTATCTTTATGTTTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CLGN	NM_001130675	exon14	c.1493_1509del	p.498_503del	.	.	86	17	117	0	.	93
CNTNAP2	26047	broad.mit.edu	37	7	147674974	147674974	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CNTNAP2	NM_014141	exon15	c.T2276A	p.L759X	.	.	103	4	92	1	.	100
CNTRL	11064	broad.mit.edu	37	9	123922528	123922528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CNTRL	NM_007018	exon30	c.A5037C	p.K1679N	.	.	617	9	653	0	.	661
COL11A1	1301	broad.mit.edu	37	1	103444965	103444965	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL11A1	NM_080629	exon32	c.A2619T	p.P873P	.	.	171	6	199	0	.	586
COL4A4	1286	hgsc.bcm.edu	37	2	227963489	227963499	+	Frame_Shift_Del	DEL	AGGGAACCCTG	AGGGAACCCTG	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	AGGGAACCCTG	AGGGAACCCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL4A4	NM_000092	exon19	c.1115_1125del	p.372_375del	.	.	114	0	165	0	.	142
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	227963489	227963494	+	In_Frame_Del	DEL	AGGGAA	AGGGAA	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	AGGGAA	AGGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL4A4	NM_000092	exon19	c.1120_1125del	p.374_375del	.	.	114	20	165	0	.	142
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	227963497	227963499	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL4A4	NM_000092	exon19	c.1115_1117del	p.372_373del	.	.	114	20	165	0	.	142
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	113519059	113519059	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CSMD3	NM_052900	exon29	c.4445-1G>T	.	.	.	115	8	162	0	.	1132
CYB5R3	1727	ucsc.edu;bcgsc.ca	37	22	43015795	43015795	+	Missense_Mutation	SNP	C	C	T	rs76458556	byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CYB5R3	NM_001171660	exon9	c.G989A	p.R330H	.	.	27	4	27	0	C|0.998;T|0.002	91
CYP2W1	54905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1024648	1024648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CYP2W1	NM_017781	exon3	c.C400T	p.H134Y	.	.	63	9	36	0	.	90
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	125685427	125685427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DCAF12L1	NM_178470	exon1	c.G1165A	p.A389T	.	.	94	8	73	0	.	132
DDX3X	1654	broad.mit.edu	37	X	41203644	41203644	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DDX3X	NM_001193416	exon10	c.C1017T	p.D339D	.	.	121	5	162	0	.	715
DEK	7913	hgsc.bcm.edu;bcgsc.ca	37	6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	rs147127829	byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DEK	NM_003472	exon2	c.G123C	p.E41D	.	.	62	5	69	0	C|0.999;G|0.001	658
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142176419	142176419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DENND3	NM_014957	exon12	c.C1444A	p.P482T	.	.	43	17	45	0	.	91
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	54586093	54586096	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DHX29	NM_019030	exon7	c.857_860del	p.286_287del	.	.	138	25	144	0	.	229
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86824435	86824435	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DMTF1	NM_001142327	exon18	c.A2262T	p.E754D	.	.	280	51	212	0	.	91
DMWD	1762	broad.mit.edu	37	19	46289396	46289396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DMWD	NM_004943	exon3	c.A1358C	p.H453P	.	.	143	30	127	26	.	90
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132175649	132175649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DNAJC13	NM_015268	exon12	c.G1322T	p.G441V	.	.	226	42	200	0	.	272
DPP6	1804	hgsc.bcm.edu;broad.mit.edu	37	7	153750014	153750014	+	Missense_Mutation	SNP	G	G	A	rs2240820		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DPP6	NM_130797	exon1	c.G109A	p.G37S	.	.	28	8	10	0	.	652
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41459179	41459179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DSCAM	NM_001271534	exon22	c.A3886T	p.T1296S	.	.	90	14	82	0	.	101
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41684133	41684133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DSCAM	NM_001271534	exon9	c.A1937G	p.D646G	.	.	135	36	137	0	.	101
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167095928	167095928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DUSP27	NM_001080426	exon5	c.G1560T	p.E520D	.	.	184	56	216	0	.	71
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	103229042	103229042	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DYNC2H1	NM_001080463	exon84	c.T12132C	p.S4044S	.	.	101	7	113	0	.	68
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103060527	103060527	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DYNC2H1	NM_001377	exon45	c.G7419C	p.M2473I	.	.	79	11	91	0	.	68
EEPD1	80820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36336619	36336619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	EEPD1	NM_030636	exon7	c.A1333G	p.I445V	.	.	155	20	119	0	.	68
EGFL8	80864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32134918	32134918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	EGFL8	NM_030652	exon6	c.C485A	p.T162K	.	.	80	19	82	0	.	90
EIF3B	8662	hgsc.bcm.edu	37	7	2394746	2394746	+	Missense_Mutation	SNP	T	T	C	rs9690787	byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	EIF3B	NM_001037283	exon1	c.T190C	p.S64P	.	.	5	5	0	0	T|0.239;C|0.761	68
ELOVL2	54898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10995354	10995354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ELOVL2	NM_017770	exon5	c.A391C	p.I131L	.	.	172	51	247	0	.	90
ERCC6	2074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50669432	50669432	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ERCC6	NM_000124	exon19	c.C3949T	p.Q1317X	.	.	39	11	57	1	.	1153
ESX1	80712	broad.mit.edu	37	X	103495090	103495090	+	Missense_Mutation	SNP	G	G	C	rs200088361		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ESX1	NM_153448	exon4	c.C1040G	p.P347R	.	.	59	6	17	0	.	131
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154158630	154158630	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	F8	NM_000132	exon14	c.A3435G	p.P1145P	.	.	127	18	94	0	.	182
FAM101B	359845	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	293163	293163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	.	.	.	67	20	86	0	.	.
FASN	2194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80050583	80050583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FASN	NM_004104	exon7	c.C884T	p.T295I	.	.	25	8	40	0	.	90
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80039092	80039092	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FASN	NM_004104	exon38	c.A6543G	p.Q2181Q	.	.	75	16	63	0	.	90
FAT2	2196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150947398	150947398	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FAT2	NM_001447	exon1	c.T1095A	p.A365A	.	.	207	40	173	1	.	96
FLT1	2321	hgsc.bcm.edu	37	13	28942739	28942739	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FLT1	NM_001160030	exon15	c.A2178G	p.S726S	.	.	90	5	93	0	.	1406
FN1	2335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216226796	216226796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FN1	NM_212482	exon45	c.C7258T	p.R2420C	.	.	51	4	38	0	.	584
GRAP2	9402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40366916	40366916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	GRAP2	NM_004810	exon8	c.G821A	p.R274Q	.	.	41	10	45	0	.	227
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48945414	48945414	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	GRIN2D	NM_000836	exon12	c.C2448T	p.I816I	.	.	46	9	58	0	.	156
HIST1H4J	8363	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27791909	27791909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	HIST1H4J	NM_021968	exon1	c.G7A	p.G3S	.	.	245	57	317	1	.	92
HOXA4	3201	hgsc.bcm.edu	37	7	27169934	27169934	+	Missense_Mutation	SNP	A	A	G	rs10251056		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	HOXA4	NM_002141	exon1	c.T419C	p.L140P	.	.	6	6	0	0	A|0.081;G|0.919	153
HTR1F	3355	broad.mit.edu	37	3	88040336	88040336	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	HTR1F	NM_000866	exon2	c.T437A	p.I146K	.	.	71	4	82	0	.	93
IQSEC3	440073	bcgsc.ca	37	12	274694	274694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IQSEC3	NM_001170738	exon10	c.A2804G	p.N935S	.	.	80	6	87	1	.	560
IQSEC3	440073	hgsc.bcm.edu;bcgsc.ca	37	12	274692	274692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IQSEC3	NM_001170738	exon10	c.G2802C	p.E934D	.	.	80	6	89	0	.	560
IQSEC3	440073	hgsc.bcm.edu;bcgsc.ca	37	12	274696	274696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IQSEC3	NM_001170738	exon10	c.G2806C	p.E936Q	.	.	79	7	86	0	.	560
IRS2	8660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	110436226	110436226	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IRS2	NM_003749	exon1	c.C2175T	p.G725G	.	.	26	5	29	0	.	1334
ITGBL1	9358	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102345029	102345029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ITGBL1	NM_004791	exon8	c.C1110A	p.D370E	.	.	98	27	136	2	.	92
ITPR2	3709	broad.mit.edu	37	12	26572000	26572000	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ITPR2	NM_002223	exon50	c.A7092C	p.E2364D	.	.	56	3	71	0	.	542
KCNC1	3746	broad.mit.edu	37	11	17801139	17801139	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KCNC1	NM_001112741	exon3	c.C1641T	p.F547F	.	.	83	4	95	0	.	91
KCNH8	131096	broad.mit.edu;bcgsc.ca	37	3	19574931	19574931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KCNH8	NM_144633	exon16	c.G2664A	p.M888I	.	.	102	6	78	0	.	524
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	36666269	36666269	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KCNU1	NM_001031836	exon7	c.A690C	p.I230I	.	.	94	12	154	0	.	23
KCP	375616	broad.mit.edu;mdanderson.org	37	7	128520499	128520499	+	RNA	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KCP	.	.	.	.	.	.	178	16	125	0	.	68
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	15727524	15727524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KIAA0430	NM_014647	exon5	c.G1183A	p.D395N	.	.	77	7	90	0	.	90
KRTAP10-6	386674	broad.mit.edu	37	21	46011616	46011616	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KRTAP10-6	NM_198688	exon1	c.C750A	p.C250X	.	.	88	4	82	0	.	90
L1CAM	3897	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153133461	153133461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	L1CAM	NM_000425	exon14	c.T1820C	p.L607S	.	.	43	8	35	0	.	138
LAD1	3898	broad.mit.edu	37	1	201351392	201351392	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	LAD1	NM_005558	exon9	c.G1536A	p.S512S	.	.	59	3	68	0	.	90
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51442826	51442826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	LETMD1	NM_001243689	exon2	c.G132T	p.K44N	.	.	67	20	92	0	.	90
LOC643923	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	107463045	107463045	+	RNA	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NR_028328	exon2	c.258-2A>C	.	.	.	70	15	91	0	.	.
LPHN1	22859	broad.mit.edu	37	19	14273816	14273816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	LPHN1	NM_001008701	exon6	c.C812A	p.A271E	.	.	49	3	49	0	.	523
LRRTM1	347730	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	80529902	80529902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	LRRTM1	NM_178839	exon2	c.C1043A	p.A348E	.	.	72	18	95	0	.	73
LYST	1130	broad.mit.edu	37	1	235973559	235973559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	LYST	NM_000081	exon5	c.C559A	p.L187M	.	.	209	6	202	0	.	143
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91448631	91448631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAN2A2	NM_006122	exon2	c.A283G	p.N95D	.	.	66	6	68	0	.	136
MAPK6	5597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	52356857	52356857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAPK6	NM_002748	exon6	c.A1826G	p.Q609R	.	.	379	22	381	0	.	1403
MAPKAPK2	9261	broad.mit.edu	37	1	206858647	206858647	+	Missense_Mutation	SNP	A	A	C	rs181345810	by1000genomes;alternate_allele	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAPKAPK2	NM_004759	exon1	c.A73C	p.T25P	.	.	62	24	13	0	A|0.951;G|0.049	1214
MAST3	23031	hgsc.bcm.edu;broad.mit.edu	37	19	18255828	18255828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAST3	NM_015016	exon23	c.G2741C	p.G914A	.	.	51	5	41	0	.	502
MEGF6	1953	broad.mit.edu	37	1	3440763	3440763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MEGF6	NM_001409	exon5	c.G529A	p.V177M	.	.	102	4	134	0	.	90
METTL21B	25895	broad.mit.edu	37	12	58174205	58174205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	METTL21B	NM_015433	exon3	c.G457T	p.V153L	.	.	52	3	50	0	.	514
MFGE8	4240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89443027	89443027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFGE8	NM_005928	exon7	c.T886A	p.S296T	.	.	93	20	79	0	.	91
MFI2	4241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196744154	196744154	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFI2	NM_005929	exon7	c.G720A	p.T240T	.	.	104	27	123	0	.	90
MFN1	55669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179096495	179096495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFN1	NM_033540	exon14	c.G1555A	p.D519N	.	.	199	28	262	0	.	155
MGC21881	0	bcgsc.ca	37	9	41954794	41954794	+	RNA	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	.	.	.	126	6	113	0	.	.
MIR4260	100422894	ucsc.edu	37	1	209796790	209796790	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	.	.	.	140	26	126	0	.	.
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102826222	102826222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MMP13	NM_002427	exon2	c.C121T	p.R41C	.	.	73	19	70	0	.	229
MPP7	143098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	28378706	28378706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MPP7	NM_173496	exon14	c.A1017G	p.E339E	.	.	96	11	116	0	.	45
MTHFR	4524	broad.mit.edu	37	1	11861347	11861347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MTHFR	NM_005957	exon3	c.G346A	p.A116T	.	.	110	3	146	0	.	90
MUC2	4583	broad.mit.edu;mdanderson.org	37	11	1093134	1093134	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MUC2	NM_002457	exon30	c.C4953A	p.T1651T	.	.	46	8	37	1	.	90
MUC4	4585	broad.mit.edu	37	3	195505772	195505772	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MUC4	NM_018406	exon2	c.G12679C	p.V4227L	.	.	121	3	113	0	.	90
MYBPC2	4606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50958840	50958840	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MYBPC2	NM_004533	exon20	c.T2277C	p.P759P	.	.	56	7	60	0	.	67
NBAS	51594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15492192	15492192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NBAS	NM_015909	exon35	c.G4103A	p.R1368K	.	.	63	15	81	1	.	94
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	.	.	.	37	6	38	0	C|0.500;T|0.500	.
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NCOA6	NM_014071	exon7	c.G807A	p.Q269Q	.	.	65	4	38	0	.	292
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	240	36	298	0	A|0.500;T|0.500	90
NHP2	55651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177577899	177577899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NHP2	NM_017838	exon3	c.C326T	p.P109L	.	.	50	11	46	0	.	90
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120430376	120430376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NOV	NM_002514	exon3	c.A389G	p.Q130R	.	.	95	28	95	0	.	228
NPAS3	64067	hgsc.bcm.edu	37	14	34269775	34269775	+	Silent	SNP	C	C	G	rs10142034	bycluster;byfrequency;by1000genomes	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NPAS3	NM_001164749	exon12	c.C2262G	p.S754S	.	.	24	21	1	0	C|0.900;G|0.100	93
NPHP3-ACAD11	0	ucsc.edu	37	3	132277774	132277774	+	RNA	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	.	.	.	67	12	61	0	.	.
NT5C2	22978	broad.mit.edu	37	10	104853055	104853055	+	Missense_Mutation	SNP	T	T	C	rs200840268		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NT5C2	NM_012229	exon15	c.A1000G	p.T334A	.	.	73	3	88	0	T|0.999;C|0.000	90
NUDT12	83594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102886634	102886634	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NUDT12	NM_031438	exon7	c.C1317T	p.F439F	.	.	123	25	121	0	.	90
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135303347	135303347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NUP205	NM_015135	exon28	c.A3959C	p.D1320A	.	.	72	11	65	0	.	207
NXPH4	11247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57619424	57619424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NXPH4	NM_007224	exon2	c.T821C	p.F274S	.	.	50	18	51	0	.	68
NYAP1	222950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100086033	100086033	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_173564	exon4	c.G689C	p.S230T	.	.	105	20	81	0	.	.
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145113709	145113709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OPLAH	NM_017570	exon5	c.G554A	p.R185H	.	.	49	14	66	0	.	68
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107457351	107457351	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR13D1	NM_001004484	exon1	c.C649T	p.L217L	.	.	151	35	178	0	.	70
OR4M1	441670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20248815	20248815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR4M1	NM_001005500	exon1	c.A334G	p.M112V	.	.	208	25	237	0	.	68
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587564	55587564	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR5D18	NM_001001952	exon1	c.A459T	p.G153G	.	.	150	29	152	0	.	71
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56113645	56113645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR8K1	NM_001002907	exon1	c.C131A	p.T44K	.	.	120	25	118	0	.	70
OTP	23440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76932919	76932919	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OTP	NM_032109	exon2	c.G174T	p.L58L	.	.	76	13	75	0	.	69
OTUD4	54726	broad.mit.edu;bcgsc.ca	37	4	146076604	146076604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OTUD4	NM_001102653	exon10	c.A637G	p.I213V	.	.	397	12	540	0	.	565
OTUD7B	56957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149915759	149915759	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OTUD7B	NM_020205	exon12	c.C2529T	p.F843F	.	.	79	8	60	0	.	502
PCDH1	5097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141244054	141244054	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PCDH1	NM_032420	exon3	c.G1842C	p.L614L	.	.	55	8	64	0	.	95
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82764470	82764470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PCLO	NM_014510	exon3	c.C2396G	p.S799C	.	.	234	15	216	0	.	29
PHOX2B	8929	hgsc.bcm.edu	37	4	41748014	41748028	+	In_Frame_Del	DEL	GCCGCCGCTGCCGCG	GCCGCCGCTGCCGCG	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	GCCGCCGCTGCCGCG	GCCGCCGCTGCCGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PHOX2B	NM_003924	exon3	c.741_755del	p.247_252del	.	.	32	17	4	0	.	1970
PLXNA3	55558	broad.mit.edu	37	X	153692351	153692351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PLXNA3	NM_017514	exon7	c.G1605T	p.E535D	.	.	74	4	55	0	.	132
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	57889912	57889912	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	POLR2B	NM_000938	exon20	c.C2851T	p.Q951X	.	.	175	16	204	0	.	92
POU3F4	5456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	82763684	82763684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	POU3F4	NM_000307	exon1	c.C352T	p.P118S	.	.	151	8	102	0	.	131
PROS1	5627	ucsc.edu;bcgsc.ca	37	3	93611955	93611955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PROS1	NM_000313	exon10	c.A977G	p.E326G	.	.	364	79	393	2	.	153
PRRG3	79057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150869170	150869170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PRRG3	NM_024082	exon4	c.C361A	p.L121I	.	.	101	11	79	0	.	134
PRSS1	5644	broad.mit.edu;bcgsc.ca	37	7	142460310	142460310	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PRSS1	NM_002769	exon4	c.G483A	p.L161L	.	.	525	20	311	0	.	577
PSG11	5680	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43529163	43529163	+	Missense_Mutation	SNP	A	A	G	rs1058223	bycluster;byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_002785	exon2	c.T110C	p.M37T	.	.	235	53	175	2	A|0.300;G|0.700	.
PTENP1	11191	broad.mit.edu	37	9	33675679	33675679	+	RNA	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	.	.	.	629	7	619	0	.	.
PXDN	7837	broad.mit.edu;bcgsc.ca	37	2	1653324	1653324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PXDN	NM_012293	exon17	c.C2228T	p.T743M	.	.	89	6	118	1	.	166
RAB1A	5861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	65331882	65331882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RAB1A	NM_004161	exon2	c.C82A	p.L28I	.	.	597	148	728	1	.	227
RBP7	116362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10068317	10068317	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RBP7	NM_052960	exon3	c.A339C	p.G113G	.	.	102	11	112	0	.	90
RCN3	57333	broad.mit.edu	37	19	50040317	50040317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RCN3	NM_020650	exon4	c.C473T	p.A158V	.	.	67	3	81	0	.	91
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43598063	43598063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RET	NM_020975	exon3	c.A611G	p.Y204C	.	.	34	6	61	0	.	4507
RFPL4B	442247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112671285	112671285	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RFPL4B	NM_001013734	exon3	c.T375A	p.D125E	.	.	54	5	66	0	.	68
RHOT1	55288	hgsc.bcm.edu;broad.mit.edu	37	17	30469471	30469476	+	Splice_Site	DEL	CCGCCG	CCGCCG	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CCGCCG	CCGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RHOT1	.	.	.	.	.	.	44	13	16	0	.	93
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152293757	152293757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RIF1	NM_018151	exon13	c.C1375T	p.P459S	.	.	181	45	200	0	.	300
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	101271389	101271389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RNF19A	NM_015435	exon11	c.G1912T	p.D638Y	.	.	39	4	39	0	.	229
RNF212	285498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1107222	1107222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RNF212	NM_194439	exon1	c.T31A	p.F11I	.	.	100	28	107	0	.	68
ROS1	6098	broad.mit.edu	37	6	117710896	117710896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ROS1	NM_002944	exon12	c.C1376A	p.A459E	.	.	98	8	162	3	.	1353
RRP15	51018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	218475635	218475635	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RRP15	NM_016052	exon2	c.140-1G>A	.	.	.	183	20	163	0	.	90
SAR1B	51128	broad.mit.edu	37	5	133944062	133944062	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SAR1B	NM_001033503	exon7	c.G480A	p.K160K	.	.	29	3	44	2	.	227
SCARF2	91179	hgsc.bcm.edu	37	22	20779768	20779768	+	Missense_Mutation	SNP	G	G	C	rs874101	byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SCARF2	NM_153334	exon11	c.C2510G	p.A837G	.	.	10	8	4	0	G|0.531;C|0.469	341
SDF4	51150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1152909	1152909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SDF4	NM_016176	exon7	c.G1072A	p.V358M	.	.	74	18	59	0	.	154
SDK1	221935	broad.mit.edu	37	7	4002366	4002366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SDK1	NM_152744	exon9	c.C1312T	p.L438F	.	.	166	7	146	0	.	138
SEC13	6396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10347279	10347279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SEC13	NM_183352	exon6	c.C548T	p.A183V	.	.	108	17	89	0	.	91
SEC63	11231	broad.mit.edu	37	6	108214765	108214765	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SEC63	NM_007214	exon16	c.T1595A	p.L532X	.	.	55	3	92	1	.	227
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83643565	83643565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SEMA3A	NM_006080	exon7	c.C770A	p.S257Y	.	.	106	13	93	0	.	156
SERPINE2	5270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	224866553	224866553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SERPINE2	NM_001136530	exon2	c.T101C	p.F34S	.	.	53	6	67	0	.	290
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32007130	32007130	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SFI1	NM_001007467	exon23	c.C2256T	p.G752G	.	.	63	14	92	0	.	90
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70332701	70332701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SHANK2	NM_133266	exon10	c.G1933A	p.G645R	.	.	79	14	68	1	.	94
SIRPB2	284759	broad.mit.edu	37	20	1456917	1456917	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SIRPB2	NM_001122962	exon5	c.A924G	p.L308L	.	.	60	3	95	0	.	226
SLC17A2	10246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	25917287	25917287	+	Silent	SNP	T	T	C	rs200248053		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLC17A2	NM_005835	exon7	c.A678G	p.L226L	.	.	44	4	57	0	T|0.999;C|0.000	91
SLC39A10	57181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	196599744	196599744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLC39A10	NM_020342	exon10	c.T2475G	p.I825M	.	.	184	17	219	0	.	92
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1245974	1245974	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLC6A18	NM_182632	exon12	c.C1668G	p.P556P	.	.	101	20	85	0	.	91
SLIT1	6585	broad.mit.edu;mdanderson.org	37	10	98945408	98945408	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLIT1	NM_003061	exon1	c.G24A	p.G8G	.	.	21	4	29	0	.	94
SLIT1	6585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98762480	98762480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLIT1	NM_003061	exon35	c.G4135A	p.G1379S	.	.	31	7	48	0	.	94
SLITRK4	139065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142717871	142717871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLITRK4	NM_001184750	exon2	c.C1054A	p.P352T	.	.	106	37	107	0	.	193
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156237933	156237933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SMG5	NM_015327	exon9	c.T881C	p.L294P	.	.	154	11	171	0	.	231
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2200545	2200545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SMG6	NM_017575	exon4	c.C2143T	p.R715C	.	.	75	19	86	0	.	228
SNX11	29916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46196421	46196421	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SNX11	NM_013323	exon6	c.T412A	p.C138S	.	.	53	7	83	0	.	226
SP8	221833	broad.mit.edu	37	7	20823972	20823972	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SP8	NM_182700	exon2	c.G1464C	p.P488P	.	.	39	12	18	1	.	91
SPRR3	6707	ucsc.edu	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	87	12	78	0	A|0.010;C|0.001;T|0.988	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	93	24	83	0	A|0.000;C|0.697;T|0.303	45
STK17B	9262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	197008292	197008292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	STK17B	NM_004226	exon5	c.A599G	p.E200G	.	.	119	9	173	0	.	334
STX6	10228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	180953892	180953892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	STX6	NM_005819	exon7	c.C612G	p.F204L	.	.	50	4	61	0	.	91
SUPT4H1	6827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56423671	56423671	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SUPT4H1	NM_003168	exon5	c.T290A	p.I97N	.	.	52	13	50	0	.	182
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72985569	72985569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TBL2	NM_012453	exon6	c.G828T	p.K276N	.	.	144	27	135	0	.	90
TCF7L2	6934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114912183	114912183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TCF7L2	NM_001146283	exon11	c.C1325A	p.S442Y	.	.	59	7	48	0	.	586
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167625964	167625964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_001122679	exon16	c.G2980A	p.A994T	.	.	112	21	96	0	.	.
TFAP2B	7021	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	50791246	50791246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TFAP2B	NM_003221	exon2	c.T208G	p.F70V	.	.	136	35	168	1	.	90
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	155458347	155458347	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TIAM2	NM_012454	exon4	c.A1231T	p.S411C	.	.	72	6	96	0	.	93
TLE6	79816	broad.mit.edu;bcgsc.ca	37	19	2991926	2991926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TLE6	NM_001143986	exon14	c.C1330T	p.R444W	.	.	71	5	56	0	.	91
TMBIM4	51643	broad.mit.edu	37	12	66531787	66531787	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TMBIM4	NM_016056	exon7	c.C670G	p.L224V	.	.	102	3	156	0	.	515
TMEM131	23505	broad.mit.edu;bcgsc.ca	37	2	98382611	98382611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TMEM131	NM_015348	exon35	c.G4689C	p.E1563D	.	.	168	6	228	0	.	74
TMEM132B	114795	broad.mit.edu;ucsc.edu	37	12	125834660	125834660	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TMEM132B	NM_052907	exon2	c.G715T	p.E239X	.	.	56	8	74	1	.	185
TMEM132B	114795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125834659	125834659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TMEM132B	NM_052907	exon2	c.G714T	p.W238C	.	.	56	8	74	1	.	185
TMEM232	642987	broad.mit.edu	37	5	109760590	109760590	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_001039763	exon13	c.C1731T	p.P577P	.	.	172	5	159	0	.	.
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77705090	77705090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_020431	exon10	c.A705T	p.E235D	.	.	113	24	150	0	.	.
TMX4	56255	broad.mit.edu	37	20	8000252	8000252	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TMX4	NM_021156	exon1	c.T9G	p.G3G	.	.	33	17	16	6	.	90
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175052888	175052888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TNN	NM_022093	exon5	c.C1051G	p.L351V	.	.	46	16	42	0	.	138
TNPO1	3842	broad.mit.edu	37	5	72179007	72179007	+	Missense_Mutation	SNP	T	T	A	rs1057846	alternate_allele	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TNPO1	NM_002270	exon11	c.T1098A	p.D366E	.	.	374	6	371	0	.	228
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47342556	47342556	+	Missense_Mutation	SNP	G	G	A	rs199534852		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TNS3	NM_022748	exon22	c.C3449T	p.P1150L	.	.	131	22	84	0	G|0.999;A|0.001	94
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98580989	98580989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TRRAP	NM_001244580	exon59	c.G8908A	p.V2970M	.	.	185	37	139	0	.	923
URM1	81605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131151593	131151593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	URM1	NM_001135947	exon4	c.G242T	p.S81I	.	.	75	13	45	0	.	90
USP1	7398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62914231	62914231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	USP1	NM_001017415	exon8	c.T1516C	p.C506R	.	.	152	19	198	0	.	659
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49316327	49316327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	USP4	NM_003363	exon21	c.T2653C	p.Y885H	.	.	106	7	121	0	.	660
USP6NL	9712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	11505005	11505005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	USP6NL	NM_001080491	exon14	c.A1973C	p.N658T	.	.	48	6	43	0	.	628
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	62146685	62146685	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	VPS13C	NM_020821	exon85	c.A11233C	p.R3745R	.	.	100	28	93	0	.	92
VPS16	64601	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	2842263	2842263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	VPS16	NM_022575	exon9	c.G812T	p.C271F	.	.	23	7	36	0	.	94
WDR31	114987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	116085393	116085393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	WDR31	NM_001012361	exon6	c.C367T	p.R123C	.	.	97	5	97	0	.	90
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	56015167	56015167	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	XKR4	NM_052898	exon1	c.C119A	p.S40X	.	.	84	22	76	0	.	92
YME1L1	10730	broad.mit.edu;bcgsc.ca	37	10	27434519	27434519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	YME1L1	NM_139312	exon4	c.C340A	p.P114T	.	.	111	5	140	0	.	91
ZEB2	9839	broad.mit.edu	37	2	145156512	145156512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZEB2	NM_014795	exon8	c.C2242T	p.H748Y	.	.	128	5	170	0	.	297
ZFP106	64397	broad.mit.edu	37	15	42734502	42734502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZFP106	NM_022473	exon7	c.T3463C	p.F1155L	.	.	166	4	142	0	.	515
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36831783	36831783	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZFP14	NM_020917	exon5	c.G945A	p.K315K	.	.	68	16	76	0	.	91
ZFP62	643836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180276368	180276368	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_001172638	exon2	c.T2127G	p.A709A	.	.	95	8	98	0	.	.
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	79733274	79733274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZFYVE16	NM_001105251	exon4	c.A770G	p.H257R	.	.	250	16	224	0	.	90
ZNF148	7707	broad.mit.edu	37	3	125032430	125032430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF148	NM_021964	exon4	c.G55A	p.E19K	.	.	153	4	136	0	.	94
ZNF212	7988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	148949877	148949877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF212	NM_012256	exon4	c.G622A	p.A208T	.	.	87	7	57	0	.	91
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180348008	180348008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF385B	NM_152520	exon6	c.G661T	p.D221Y	.	.	190	54	213	0	.	23
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88502140	88502140	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_001127464	exon2	c.G8178A	p.G2726G	.	.	67	19	83	0	.	.
ZNF519	162655	broad.mit.edu	37	18	14105460	14105460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF519	NM_145287	exon3	c.G1079A	p.G360E	.	.	32	3	59	0	.	90
ZNF746	155061	broad.mit.edu	37	7	149171660	149171660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF746	NM_001163474	exon7	c.C1753A	p.H585N	.	.	78	4	49	0	.	155
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35255576	35255576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF76	NM_003427	exon5	c.G386T	p.G129V	.	.	48	13	64	0	.	90
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88964910	88964910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF804B	NM_181646	exon4	c.C2614A	p.Q872K	.	.	273	35	193	0	.	101
ZNF814	730051	ucsc.edu	37	19	58384334	58384334	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_001144989	exon3	c.T2424C	p.S808S	.	.	114	1	110	0	.	.
VPS16	64601	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	2842264	2842265	+	Missense_Mutation	DNP	CA	CA	TT	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	p.S272C	.	.	.	.	.	.	.	
SCARF2	91179	hgsc.bcm.edu	37	22	20779946	20779947	+	Missense_Mutation	DNP	CG	CG	GC	rs70944210		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	p.DV777EL	.	.	.	.	.	.	.	
FRRS1L	23732	hgsc.bcm.edu	37	9	111929420	111929421	+	Missense_Mutation	DNP	CG	CG	GC	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	.	.	.	p.R51A	.	.	.	.	.	.	.	
