Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ANGPTL6	83854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10204121	10204121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ANGPTL6	NM_031917	exon5	c.C1126T	p.R376W	.	.	95	39	66	0	.	90
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46215247	46215247	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ARID2	NM_152641	exon6	c.682delA	p.K228fs	.	.	417	184	387	0	.	100
BAZ2B	29994	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160289818	160289818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	BAZ2B	NM_013450	exon9	c.C1350G	p.S450R	.	.	80	26	60	1	.	94
BIRC8	112401	broad.mit.edu;bcgsc.ca	37	19	53793554	53793554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	BIRC8	NM_033341	exon1	c.G74A	p.R25K	.	.	80	33	98	2	.	227
BPNT1	10380	ucsc.edu	37	1	220231338	220231338	+	RNA	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	BPNT1	.	.	.	.	.	.	91	1	34	0	.	91
BTN2A3P	54718	broad.mit.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	rs141013110		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	.	.	.	.	.	.	126	7	42	1	C|1.000;T|0.000	.
BTN2A3P	54718	mdanderson.org	37	6	26422389	26422389	+	RNA	SNP	C	C	T	rs113134648	byfrequency	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	.	.	.	.	.	.	128	33	47	0	C|0.983;T|0.017	.
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6697550	6697550	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	C3	NM_000064	exon21	c.C2601T	p.L867L	.	.	50	24	50	0	.	95
C6orf99	100130967	bcgsc.ca;mdanderson.org	37	6	159331223	159331223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_001195032	exon3	c.C356T	p.P119L	.	.	91	44	106	2	.	.
CALR	811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13054718	13054718	+	Missense_Mutation	SNP	C	C	G	rs148604761	alternate_allele	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CALR	NM_004343	exon9	c.C1245G	p.D415E	.	.	97	44	95	0	C|0.999;T|0.000	91
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	67701255	67701255	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CAND1	NM_018448	exon11	c.3008delT	p.L1003fs	.	.	87	46	95	0	.	516
CD97	976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14516639	14516639	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CD97	NM_078481	exon14	c.1709delT	p.L570fs	.	.	43	21	44	0	.	570
CDC20B	166979	broad.mit.edu;bcgsc.ca	37	5	54420777	54420777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CDC20B	NM_001170402	exon9	c.G1069T	p.A357S	.	.	64	5	80	0	.	90
CDC73	79577	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193111054	193111054	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CDC73	NM_024529	exon7	c.C587G	p.T196S	.	.	225	41	119	1	.	1009
CDH11	1009	ucsc.edu	37	16	64984831	64984831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CDH11	NM_001797	exon12	c.G1733A	p.G578D	.	.	41	4	44	0	.	852
CELF5	60680	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3273900	3273900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CELF5	NM_021938	exon3	c.G373A	p.D125N	.	.	55	19	56	1	.	92
CHRM4	1132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46407538	46407538	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_000741	exon1	c.G570C	p.L190L	.	.	80	38	67	0	.	.
CNR1	1268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88854115	88854115	+	Silent	SNP	C	C	T	rs35057475		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CNR1	NM_001160258	exon4	c.G879A	p.A293A	.	.	47	20	45	0	C|0.987;T|0.013	92
COMMD3	23412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22607754	22607754	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	COMMD3	NM_012071	exon6	c.T431G	p.M144R	.	.	315	60	157	0	.	115
COX5A	9377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75221554	75221554	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	COX5A	NM_004255	exon2	c.C120G	p.C40W	.	.	82	37	70	0	.	90
CPEB2	132864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15067830	15067830	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CPEB2	NM_001177382	exon12	c.C2931T	p.G977G	.	.	119	42	113	0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	.	.	145	82	106	0	.	24361
CYP2F1	1572	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41622416	41622416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CYP2F1	NM_000774	exon3	c.G228A	p.V76V	.	.	45	17	49	1	.	90
DCHS1	8642	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6661102	6661102	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DCHS1	NM_003737	exon2	c.T1743C	p.T581T	.	.	47	19	65	1	.	73
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	225284905	225284905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DNAH14	NM_001373	exon22	c.A3659G	p.Y1220C	.	.	138	7	48	0	.	23
DNAH9	1770	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11737970	11737970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DNAH9	NM_001372	exon49	c.G9262A	p.A3088T	.	.	22	11	27	1	.	168
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116503668	116503668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DPP10	NM_001178034	exon10	c.C871G	p.Q291E	.	.	106	61	74	0	.	142
DPY19L2P2	349152	broad.mit.edu	37	7	102825946	102825946	+	RNA	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	.	.	.	.	.	.	131	6	130	1	.	.
EEF1A1	1915	broad.mit.edu	37	6	74229214	74229214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	EEF1A1	NM_001402	exon3	c.C170T	p.A57V	.	.	8	4	11	0	.	226
EIF3B	8662	hgsc.bcm.edu	37	7	2394991	2394991	+	Silent	SNP	C	C	T	rs11551167	byfrequency	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	EIF3B	NM_001037283	exon1	c.C435T	p.N145N	.	.	4	4	3	0	C|0.787;T|0.213	68
EML3	256364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62373664	62373664	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	EML3	NM_153265	exon13	c.G1527A	p.Q509Q	.	.	66	23	66	0	.	91
ERN1	2081	hgsc.bcm.edu	37	17	62133223	62133223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ERN1	NM_001433	exon13	c.A1484T	p.Q495L	.	.	79	5	28	0	.	784
F10	2159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113803570	113803570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	F10	NM_000504	exon8	c.G1206A	p.M402I	.	.	69	34	71	0	.	227
FAAH	2166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46867761	46867761	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FAAH	NM_001441	exon2	c.196-2A>G	.	.	.	72	27	66	0	.	154
FAM24A	118670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124672364	124672364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FAM24A	NM_001029888	exon3	c.C212G	p.T71S	.	.	96	44	76	0	.	92
FAM86JP	100125556	broad.mit.edu	37	3	125637707	125637707	+	RNA	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	.	.	.	.	.	.	46	3	31	0	.	.
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40408468	40408468	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FCGBP	NM_003890	exon8	c.G4371A	p.K1457K	.	.	213	67	242	0	.	98
FH	2271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	241667442	241667442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FH	NM_000143	exon7	c.G1008A	p.M336I	.	.	213	109	98	0	.	416
FH	2271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	241667444	241667444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FH	NM_000143	exon7	c.A1006C	p.M336L	.	.	215	110	94	0	.	416
FLG	2312	broad.mit.edu	37	1	152278967	152278967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FLG	NM_002016	exon3	c.G8395T	p.G2799W	.	.	378	12	175	0	.	106
FLG	2312	broad.mit.edu	37	1	152284219	152284219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FLG	NM_002016	exon3	c.G3143A	p.G1048D	.	.	143	4	76	0	.	106
FRG1B	284802	bcgsc.ca	37	20	29624034	29624034	+	RNA	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FRG1B	.	.	.	.	.	.	298	20	265	0	.	22
FRMD6	122786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	52186983	52187007	+	Frame_Shift_Del	DEL	ACTCCAGCAGTGCCATCCACCGCAA	ACTCCAGCAGTGCCATCCACCGCAA	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	ACTCCAGCAGTGCCATCCACCGCAA	ACTCCAGCAGTGCCATCCACCGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FRMD6	NM_001267046	exon11	c.1235_1259del	p.412_420del	.	.	57	11	68	0	.	524
GALNT15	117248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	16217085	16217085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_054110	exon1	c.G427A	p.V143M	.	.	31	18	41	0	.	.
GLI3	2737	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42017201	42017201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GLI3	NM_000168	exon12	c.G1768T	p.A590S	.	.	178	117	114	1	.	1149
GLRA4	441509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102974160	102974160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GLRA4	NM_001024452	exon7	c.G758A	p.R253Q	.	.	226	96	190	1	.	108
GNPTG	84572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1412312	1412312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GNPTG	NM_032520	exon7	c.G517A	p.A173T	.	.	31	12	36	0	.	90
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	126086303	126086303	+	Missense_Mutation	SNP	G	G	A	rs139289550		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GRM8	NM_000845	exon9	c.C2554T	p.R852C	.	.	76	32	78	0	G|1.000;A|0.000	581
HIST1H1C	3006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26056179	26056179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	HIST1H1C	NM_005319	exon1	c.A478G	p.K160E	.	.	328	254	122	2	.	231
IER3	8870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30712289	30712289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	IER3	NM_003897	exon1	c.C7T	p.H3Y	.	.	135	105	71	0	.	90
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117864027	117864027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	IL10RA	NM_001558	exon4	c.A439T	p.R147W	.	.	65	26	48	0	.	91
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30507788	30507788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ITGAL	NM_002209	exon15	c.T1733C	p.I578T	.	.	104	49	105	0	.	994
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140631270	140631270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KCNK9	NM_016601	exon2	c.C356A	p.P119Q	.	.	90	30	59	0	.	93
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126044596	126044596	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KIAA0196	NM_014846	exon27	c.A3222T	p.P1074P	.	.	89	30	82	0	.	92
KIAA1731	85459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93402866	93402866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KIAA1731	NM_033395	exon5	c.C458T	p.A153V	.	.	70	29	62	0	.	22
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55604594	55604594	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KIT	NM_000222	exon21	c.2803-1G>T	.	.	.	69	31	87	0	.	20166
KRTAP2-3	730755	broad.mit.edu	37	17	39215975	39215975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_001165252	exon1	c.C328T	p.R110W	.	.	78	3	17	0	.	.
KRTAP4-3	85290	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	227	80	56	2	A|0.046;T|0.954	22
KRTAP5-4	387267	broad.mit.edu	37	11	1643075	1643075	+	Silent	SNP	A	A	G	rs1715357	byfrequency	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_001012709	exon1	c.T249C	p.S83S	.	.	65	9	63	3	A|0.876;G|0.124	.
LDLRAD1	388633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	54477846	54477846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LDLRAD1	NM_001010978	exon4	c.C310T	p.H104Y	.	.	22	13	27	0	.	137
LHX9	56956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197896793	197896793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LHX9	NM_020204	exon4	c.G806A	p.R269H	.	.	215	114	93	0	.	91
LMTK3	114783	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49002759	49002759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LMTK3	NM_001080434	exon12	c.G1654T	p.V552L	.	.	49	23	51	0	.	1357
LOC100132832	0	bcgsc.ca	37	7	76682443	76682443	+	RNA	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	.	.	.	.	.	.	135	23	76	0	.	.
LRRC43	254050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122687883	122687883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LRRC43	NM_001098519	exon12	c.C1865T	p.P622L	.	.	22	9	26	0	.	135
MANEAL	149175	broad.mit.edu	37	1	38265768	38265768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MANEAL	NM_001113482	exon4	c.A1267C	p.T423P	.	.	44	21	40	18	.	90
MAPKAPK3	7867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50677796	50677796	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MAPKAPK3	NM_001243926	exon5	c.220-1G>A	.	.	.	79	36	78	0	.	1423
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220791830	220791830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MARK1	NM_018650	exon8	c.G731T	p.G244V	.	.	163	36	104	0	.	802
MUC2	4583	bcgsc.ca	37	11	1093298	1093298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MUC2	NM_002457	exon30	c.C5117T	p.T1706M	.	.	19	5	30	1	.	90
MUC2	4583	broad.mit.edu	37	11	1093344	1093344	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MUC2	NM_002457	exon30	c.G5163T	p.P1721P	.	.	27	6	21	1	.	90
MUC4	4585	broad.mit.edu	37	3	195511238	195511238	+	Missense_Mutation	SNP	C	C	T	rs3103956		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MUC4	NM_018406	exon2	c.G7213A	p.D2405N	.	.	119	8	142	3	.	90
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16701140	16701140	+	Missense_Mutation	SNP	G	G	A	rs138565696		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MYO10	NM_012334	exon25	c.C3364T	p.R1122C	.	.	81	29	76	0	G|0.999;A|0.000	3
MYO5B	4645	bcgsc.ca	37	18	47364009	47364009	+	Silent	SNP	G	G	A	rs77327589		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MYO5B	NM_001080467	exon37	c.C5016T	p.G1672G	.	.	91	12	78	3	.	72
OPN5	221391	broad.mit.edu	37	6	47754353	47754353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OPN5	NM_181744	exon2	c.G233T	p.C78F	.	.	89	4	29	0	.	69
OR5H6	79295	hgsc.bcm.edu	37	3	97983496	97983496	+	Missense_Mutation	SNP	C	C	T	rs145155372	byfrequency	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR5H6	NM_001005479	exon1	c.C368T	p.T123I	.	.	112	7	95	0	C|0.999;T|0.001	137
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517298	158517298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR6Y1	NM_001005189	exon1	c.G598T	p.A200S	.	.	130	67	61	0	.	69
OR8A1	390275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124440804	124440804	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR8A1	NM_001005194	exon1	c.A840C	p.T280T	.	.	86	39	74	0	.	69
OR9G4	283189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56510613	56510613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR9G4	NM_001005284	exon1	c.C675A	p.S225R	.	.	50	25	54	0	.	71
OSBPL10	114884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	31725509	31725509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OSBPL10	NM_017784	exon8	c.G1343T	p.G448V	.	.	49	28	55	1	.	69
PCDHGB2	56103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140741917	140741917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PCDHGB2	NM_018923	exon1	c.G2215T	p.V739F	.	.	78	26	85	1	.	33
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	144868027	144868027	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PDE4DIP	NM_014644	exon33	c.C5412A	p.Y1804X	.	.	223	79	159	0	.	663
PMFBP1	83449	bcgsc.ca	37	16	72162993	72162993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PMFBP1	NM_031293	exon13	c.G1922A	p.R641Q	.	.	89	6	101	0	.	92
PRDM5	11107	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	121732583	121732583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PRDM5	NM_018699	exon8	c.T887C	p.I296T	.	.	152	64	160	1	.	91
PRDM8	56978	broad.mit.edu;bcgsc.ca	37	4	81123250	81123252	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	CAG	CAG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PRDM8	NM_001099403	exon4	c.634_636del	p.212_212del	.	.	68	9	75	0	.	91
PRKRIR	5612	broad.mit.edu	37	11	76062984	76062984	+	Missense_Mutation	SNP	C	C	T	rs145514145		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PRKRIR	NM_004705	exon5	c.G1210A	p.V404I	.	.	227	4	213	0	C|1.000;T|0.000	93
PRX	57716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40903727	40903727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PRX	NM_181882	exon7	c.C532A	p.P178T	.	.	21	12	29	0	.	92
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231931711	231931711	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PSMD1	NM_002807	exon5	c.C396T	p.G132G	.	.	112	14	85	0	.	92
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73812012	73812012	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	RLIM	NM_183353	exon5	c.A1138T	p.S380C	.	.	108	57	94	0	.	228
RNF39	80352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30043421	30043421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	RNF39	NM_025236	exon1	c.C146T	p.A49V	.	.	151	8	69	0	.	226
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	151105186	151105186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SEMA6C	NM_001178061	exon20	c.G2663A	p.G888D	.	.	108	27	52	0	.	92
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51960896	51960896	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SIGLEC8	NM_014442	exon2	c.G552T	p.G184G	.	.	40	17	34	0	.	94
SLC12A5	57468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44664102	44664102	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SLC12A5	NM_001134771	exon3	c.C276A	p.T92T	.	.	76	30	91	0	.	156
SLC25A34	284723	broad.mit.edu;bcgsc.ca	37	1	16064682	16064682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SLC25A34	NM_207348	exon3	c.G539T	p.G180V	.	.	73	35	54	2	.	68
SLC38A10	124565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79226202	79226202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SLC38A10	NM_001037984	exon13	c.G1738A	p.V580I	.	.	194	27	56	1	.	70
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	157065387	157065387	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SOX30	NM_178424	exon4	c.T1731A	p.S577R	.	.	87	38	60	0	.	91
SP3	6670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174820570	174820570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SP3	NM_003111	exon4	c.A670G	p.I224V	.	.	103	68	62	0	.	227
SPEG	10290	broad.mit.edu	37	2	220344732	220344732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SPEG	NM_005876	exon25	c.C5212T	p.R1738W	.	.	92	4	60	0	.	383
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131339464	131339464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SPTAN1	NM_003127	exon7	c.A842G	p.D281G	.	.	67	33	64	0	.	158
STAT1	6772	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191872330	191872330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	STAT1	NM_007315	exon5	c.G331A	p.E111K	.	.	133	78	83	2	.	1335
STRADB	55437	hgsc.bcm.edu	37	2	202344886	202344886	+	Silent	SNP	C	C	T	rs146098224		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	STRADB	NM_018571	exon12	c.C1245T	p.Y415Y	.	.	131	7	50	0	.	522
SUPT5H	6829	broad.mit.edu	37	19	39959925	39959925	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SUPT5H	NM_003169	exon15	c.C1261T	p.Q421X	.	.	56	3	71	0	.	94
TEX9	374618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56683606	56683606	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TEX9	NM_198524	exon7	c.C561T	p.D187D	.	.	144	69	138	0	.	90
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224009040	224009040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TP53BP2	NM_001031685	exon2	c.T57G	p.N19K	.	.	135	65	70	0	.	229
TREML2	79865	hgsc.bcm.edu	37	6	41166095	41166095	+	Missense_Mutation	SNP	T	T	C	rs141238140	byfrequency	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TREML2	NM_024807	exon2	c.A128G	p.Y43C	.	.	76	5	42	0	T|1.000;C|0.000	91
TREML2	79865	hgsc.bcm.edu	37	6	41166119	41166119	+	Missense_Mutation	SNP	T	T	C	rs76984414		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TREML2	NM_024807	exon2	c.A104G	p.E35G	.	.	71	5	40	0	.	91
TREML2	79865	hgsc.bcm.edu	37	6	41166123	41166123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TREML2	NM_024807	exon2	c.G100A	p.G34R	.	.	67	6	38	0	.	91
TRIM29	23650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120008342	120008342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TRIM29	NM_012101	exon1	c.C398T	p.S133L	.	.	29	10	43	0	.	291
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560965	179560965	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TTN	NM_001267550	exon114	c.T30834C	p.A10278A	.	.	82	49	71	0	.	636
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49152516	49152516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	USP19	NM_001199161	exon14	c.G2057T	p.G686V	.	.	65	30	55	1	.	663
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	157098983	157098983	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	VEPH1	NM_001167911	exon7	c.T1089G	p.L363L	.	.	104	43	85	0	.	155
ZC2HC1A	51101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	79598709	79598709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_016010	exon4	c.C218A	p.P73Q	.	.	276	81	154	0	.	.
ZNF219	51222	ucsc.edu	37	14	21560583	21560583	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ZNF219	NM_001102454	exon3	c.C873T	p.G291G	.	.	38	4	16	0	.	90
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44739094	44739097	+	Frame_Shift_Del	DEL	TTTT	TTTT	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	TTTT	TTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ZNF227	NM_182490	exon6	c.511_514del	p.171_172del	.	.	129	47	129	0	.	91
ZNF560	147741	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9578459	9578459	+	Silent	SNP	C	C	T	rs16980696	byfrequency	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ZNF560	NM_152476	exon10	c.G1164A	p.P388P	.	.	106	47	98	0	C|0.951;T|0.049	158
IRF9	10379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24631525	24631526	+	Missense_Mutation	DNP	TT	TT	GC	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	.	.	.	p.F58A	.	.	.	.	.	.	.	
FRG1B	284802	bcgsc.ca	37	20	29624032	29624033	+	Missense_Mutation	DNP	AT	AT	TA	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	.	.	.	p.D24V	.	.	.	.	.	.	.	
