Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AACSP1	729522	broad.mit.edu;ucsc.edu	37	5	178199526	178199526	+	RNA	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	19	8	17	0	.	.
ACBD3	64746	broad.mit.edu	37	1	226353622	226353622	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ACBD3	NM_022735	exon2	c.C366A	p.G122G	.	.	762	10	468	1	.	226
ACE	1636	bcgsc.ca;mdanderson.org	37	17	61568363	61568363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ACE	NM_000789	exon18	c.C2690A	p.P897H	.	.	125	49	96	3	.	94
ADPRH	141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119306620	119306620	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ADPRH	NM_001125	exon5	c.G969A	p.V323V	.	.	115	59	83	1	.	91
AGAP3	116988	broad.mit.edu	37	7	150784027	150784027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AGAP3	NM_001042535	exon1	c.G199T	p.A67S	.	.	187	5	92	1	.	92
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230846423	230846423	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AGT	NM_000029	exon2	c.T174C	p.N58N	.	.	161	43	93	0	.	226
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247024551	247024551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AHCTF1	NM_015446	exon29	c.G3809T	p.C1270F	.	.	426	120	246	0	.	97
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33935332	33935332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AP2B1	NM_001282	exon5	c.A451G	p.I151V	.	.	180	110	103	0	.	91
AP2M1	1173	hgsc.bcm.edu	37	3	183899820	183899820	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	AP2M1	NM_001025205	exon8	c.G942T	p.L314L	.	.	91	4	67	0	.	90
APH1B	83464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	63571457	63571457	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	APH1B	NM_001145646	exon2	c.C211T	p.L71L	.	.	156	14	126	0	.	658
ARHGEF5	7984	bcgsc.ca	37	7	144059763	144059763	+	Missense_Mutation	SNP	A	A	G	rs201796473		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ARHGEF5	NM_005435	exon2	c.A1G	p.M1V	.	.	1416	43	599	0	.	229
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155448114	155448114	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ASH1L	NM_018489	exon3	c.G4547C	p.R1516P	.	.	137	50	115	0	.	234
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31319755	31319755	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ASXL3	NM_030632	exon11	c.A2387T	p.N796I	.	.	58	17	65	0	.	49
BMP7	655	broad.mit.edu	37	20	55840867	55840867	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	BMP7	NM_001719	exon1	c.C312A	p.S104S	.	.	95	5	77	0	.	187
BPIFB4	149954	bcgsc.ca	37	20	31671247	31671247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_182519	exon3	c.G244T	p.D82Y	.	.	102	6	82	0	.	.
BPNT1	10380	ucsc.edu	37	1	220231330	220231330	+	RNA	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	BPNT1	.	.	.	.	.	.	129	1	67	0	.	91
C1orf106	55765	broad.mit.edu;bcgsc.ca	37	1	200870192	200870194	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	AGG	AGG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1orf106	NM_018265	exon5	c.722_724del	p.241_242del	.	.	20	7	23	0	.	93
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60520924	60520924	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1orf87	NM_152377	exon3	c.C294T	p.N98N	.	.	233	104	228	0	.	154
C1QB	713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22987600	22987600	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C1QB	NM_000491	exon3	c.C483T	p.T161T	.	.	157	72	121	1	.	153
C20orf111	51526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42826241	42826248	+	Frame_Shift_Del	DEL	GCTTTTGT	GCTTTTGT	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	GCTTTTGT	GCTTTTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	C20orf111	NM_016470	exon4	c.323_330del	p.108_110del	.	.	113	37	89	0	.	90
C4orf51	646603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146648100	146648100	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001080531	exon3	c.A345G	p.S115S	.	.	510	139	260	0	.	.
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181693632	181693632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CACNA1E	NM_001205293	exon17	c.A2101G	p.I701V	.	.	113	50	78	0	.	95
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152729009	152729009	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CACNB4	NM_000726	exon7	c.522-2A>G	.	.	.	91	41	71	0	.	24
CASP3	836	broad.mit.edu	37	4	185553428	185553428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CASP3	NM_004346	exon5	c.C301A	p.R101S	.	.	419	7	212	0	.	659
CCDC63	160762	broad.mit.edu	37	12	111296500	111296500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CCDC63	NM_152591	exon4	c.G290T	p.R97L	.	.	171	4	141	0	.	134
CCKAR	886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	26491839	26491839	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CCKAR	NM_000730	exon1	c.C51T	p.P17P	.	.	99	41	101	0	.	523
CCSER1	401145	broad.mit.edu	37	4	91230590	91230590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001145065	exon2	c.G1155T	p.M385I	.	.	195	5	134	0	.	.
CCT2	10576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69986800	69986800	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CCT2	NM_006431	exon9	c.A795G	p.A265A	.	.	81	26	55	0	.	651
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64603631	64603631	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDC42BPG	NM_017525	exon13	c.C1626T	p.A542A	.	.	51	18	48	0	.	528
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73453964	73453964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDH23	NM_001171931	exon20	c.T2237G	p.V746G	.	.	59	25	56	0	.	563
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31323299	31323299	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CDH6	NM_004932	exon12	c.C2257T	p.L753L	.	.	165	73	146	0	.	159
CFTR	1080	bcgsc.ca	37	7	117232429	117232429	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CFTR	NM_000492	exon14	c.G2208T	p.L736L	.	.	124	7	61	0	.	518
CHRD	8646	broad.mit.edu	37	3	184104344	184104344	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CHRD	NM_003741	exon16	c.T1997G	p.V666G	.	.	50	13	28	9	.	93
CIT	11113	broad.mit.edu	37	12	120306886	120306886	+	Missense_Mutation	SNP	G	G	T	rs35837015	byfrequency;alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CIT	NM_001206999	exon3	c.C216A	p.H72Q	.	.	335	6	257	0	G|0.994;A|0.006	399
CLCA4	22802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87040355	87040355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CLCA4	NM_012128	exon10	c.G1600A	p.D534N	.	.	239	96	198	2	.	92
CLSTN1	22883	broad.mit.edu;bcgsc.ca	37	1	9795558	9795558	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CLSTN1	NM_001009566	exon13	c.G1850C	p.G617A	.	.	129	5	108	0	.	523
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99690405	99690405	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CNTN5	NM_001243270	exon3	c.G186T	p.L62L	.	.	213	42	196	0	.	366
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	146536896	146536896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CNTNAP2	NM_014141	exon3	c.A302T	p.Q101L	.	.	176	106	123	0	.	100
COL7A1	1294	broad.mit.edu	37	3	48610777	48610777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	COL7A1	NM_000094	exon83	c.A6623G	p.E2208G	.	.	315	9	217	4	.	160
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	40770037	40770037	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	COL9A2	NM_001852	exon24	c.1242delC	p.P414fs	.	.	78	36	58	0	.	92
COPB2	9276	broad.mit.edu	37	3	139080107	139080107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	COPB2	NM_004766	exon17	c.C2026A	p.L676I	.	.	92	4	62	0	.	92
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	173316743	173316743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CPEB4	NM_030627	exon1	c.G7T	p.D3Y	.	.	228	91	220	0	.	90
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197407733	197407733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CRB1	NM_201253	exon10	c.A3806G	p.Y1269C	.	.	114	42	88	0	.	161
CROCC	9696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17248518	17248518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CROCC	NM_014675	exon1	c.G5A	p.S2N	.	.	224	45	215	0	.	137
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113585851	113585851	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CSMD3	NM_198123	exon24	c.A3921T	p.L1307L	.	.	82	18	88	0	.	1132
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38690173	38690173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CSNK1E	NM_001894	exon9	c.A1160G	p.N387S	.	.	51	25	43	0	.	1193
CSPG4	1464	bcgsc.ca	37	15	76005013	76005013	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CSPG4	NM_001897	exon1	c.C84A	p.S28S	.	.	149	6	127	0	.	229
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	.	.	222	84	175	1	.	24361
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16975121	16975121	+	Missense_Mutation	SNP	C	C	T	rs143400113	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CUBN	NM_001081	exon40	c.G6089A	p.R2030Q	.	.	123	54	91	0	C|0.999;T|0.001	166
CWF19L2	143884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107299752	107299752	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CWF19L2	NM_152434	exon8	c.T1206C	p.C402C	.	.	203	104	178	1	.	68
CXorf36	79742	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	45060068	45060068	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CXorf36	NM_176819	exon1	c.G4T	p.E2X	.	.	40	14	34	0	.	130
CYB5R4	51167	broad.mit.edu	37	6	84649778	84649778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	CYB5R4,NS,carcinoma,+1	CYB5R4	NM_016230	exon13	c.A1112T	p.D371V	.	.	153	8	240	8	.	153
CYP2A7	1549	broad.mit.edu	37	19	41381603	41381603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	CYP2A7	NM_000764	exon9	c.C1480A	p.R494S	.	.	654	8	535	0	.	93
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	122011265	122011265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DBC1	NM_014618	exon3	c.C382G	p.H128D	.	.	70	16	68	0	.	582
DDR1	780	broad.mit.edu	37	6	30864593	30864593	+	Missense_Mutation	SNP	G	G	T	rs140296720	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	DDR1_ENST00000324771,upper_leg,malignant_melanoma,0	DDR1	NM_013994	exon12	c.G1820T	p.R607L	.	.	299	7	131	0	.	1403
DDX39B	7919	broad.mit.edu	37	6	31500690	31500690	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DDX39B	NM_004640	exon8	c.736-2A>C	.	.	.	207	35	84	9	.	92
DDX46	9879	bcgsc.ca	37	5	134162650	134162650	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DDX46	NM_014829	exon22	c.G2988T	p.L996L	.	.	120	6	105	0	.	227
DENND4B	9909	bcgsc.ca	37	1	153907306	153907306	+	Silent	SNP	T	T	C	rs12567786	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DENND4B	NM_014856	exon18	c.A2703G	p.Q901Q	.	.	50	18	39	10	T|0.893;C|0.107	69
DHCR7	1717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71146469	71146469	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DHCR7	NM_001163817	exon9	c.G1380A	p.E460E	.	.	77	19	37	0	.	228
DHX36	170506	ucsc.edu;bcgsc.ca	37	3	154021173	154021173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DHX36	NM_020865	exon9	c.G1162A	p.G388S	.	.	781	264	546	3	.	226
DLK1	8788	ucsc.edu	37	14	101195357	101195357	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DLK1	NM_003836	exon3	c.G216T	p.G72G	.	.	48	4	43	0	.	949
DOK1	1796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74783058	74783058	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DOK1	NM_001381	exon4	c.C492T	p.A164A	.	.	112	36	60	0	.	226
DOPEY2	9980	broad.mit.edu	37	21	37583887	37583887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DOPEY2	NM_005128	exon6	c.G718T	p.V240F	.	.	209	6	162	1	.	91
DRAP1	10589	broad.mit.edu	37	11	65688066	65688066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DRAP1	NM_006442	exon5	c.G356T	p.R119L	.	.	205	5	186	1	.	90
DRD5	1816	ucsc.edu	37	4	9784542	9784542	+	Missense_Mutation	SNP	A	A	C	rs2227851		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DRD5	NM_000798	exon1	c.A889C	p.T297P	.	.	59	8	45	0	A|0.989;C|0.011	91
DRD5	1816	ucsc.edu	37	4	9784617	9784617	+	Missense_Mutation	SNP	T	T	C	rs112029473	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DRD5	NM_000798	exon1	c.T964C	p.C322R	.	.	64	9	55	2	T|0.500;C|0.500	91
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103175403	103175403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	DYNC2H1	NM_001080463	exon78	c.T11357G	p.L3786W	.	.	90	37	88	0	.	68
E4F1	1877	broad.mit.edu	37	16	2284346	2284346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	E4F1	NM_004424	exon10	c.G1550T	p.R517L	.	.	175	5	109	0	.	187
EIF2AK4	440275	broad.mit.edu	37	15	40299226	40299226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	EIF2AK4	NM_001013703	exon24	c.G3367T	p.A1123S	.	.	92	4	80	0	.	757
ELP6	54859	broad.mit.edu;bcgsc.ca	37	3	47552690	47552690	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001031703	exon2	c.C81A	p.A27A	.	.	93	6	54	0	.	.
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14740911	14740911	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	EMR3	NM_032571	exon14	c.C1752A	p.T584T	.	.	76	34	56	0	.	528
F10	2159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113793724	113793724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	F10	NM_000504	exon4	c.G310T	p.G104C	.	.	100	31	66	0	.	227
FAM159A	348378	broad.mit.edu	37	1	53108560	53108560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FAM159A	NM_001042693	exon2	c.G208T	p.V70L	.	.	239	6	228	2	.	90
FAM65A	79567	broad.mit.edu	37	16	67574589	67574589	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FAM65A	NM_001193523	exon10	c.G843T	p.T281T	.	.	143	6	89	0	.	92
FANCM	57697	broad.mit.edu	37	14	45645863	45645863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FANCM	NM_020937	exon14	c.G3906T	p.M1302I	.	.	199	7	158	0	.	569
FAT2	2196	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	150946610	150946610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FAT2	NM_001447	exon1	c.T1883C	p.L628P	.	.	109	21	78	0	.	96
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127626533	127626533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FBN2	NM_001999	exon50	c.G6336T	p.K2112N	.	.	152	59	145	0	.	146
FCN1	2219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137801655	137801655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FCN1	NM_002003	exon9	c.C970T	p.R324W	.	.	68	27	47	0	.	154
FETUB	26998	broad.mit.edu	37	3	186362632	186362632	+	Nonsense_Mutation	SNP	G	G	T	rs199634697	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FETUB	NM_014375	exon4	c.G517T	p.E173X	.	.	76	4	51	0	G|0.999;A|0.000	92
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34289345	34289345	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FHOD3	NM_025135	exon15	c.A1999T	p.R667W	.	.	100	65	131	0	.	139
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128486943	128486943	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FLNC	NM_001127487	exon24	c.G4272C	p.G1424G	.	.	121	87	64	0	.	141
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171251220	171251220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FMO1	NM_002021	exon7	c.G931T	p.V311F	.	.	86	11	69	0	.	515
FSIP2	401024	broad.mit.edu	37	2	186673158	186673158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FSIP2	NM_173651	exon17	c.G19392T	p.K6464N	.	.	344	7	244	1	.	90
FST	10468	broad.mit.edu	37	5	52779486	52779486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FST	NM_013409	exon3	c.G430T	p.A144S	.	.	218	5	175	0	.	90
FSTL5	56884	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	162307497	162307497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	FSTL5	NM_020116	exon16	c.C1946T	p.P649L	.	.	180	40	99	1	.	158
GAA	2548	ucsc.edu	37	17	78079669	78079669	+	Missense_Mutation	SNP	G	G	A	rs1042395	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GAA	NM_001079803	exon4	c.G668A	p.R223H	.	.	29	16	16	0	G|0.354;A|0.646	91
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47427952	47427952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GABRB1	NM_000812	exon9	c.T1342C	p.S448P	.	.	140	60	175	0	.	92
GAS2L2	246176	broad.mit.edu	37	17	34077258	34077258	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GAS2L2	NM_139285	exon2	c.C465A	p.G155G	.	.	387	6	248	1	.	227
GLRA2	2742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14550361	14550361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GLRA2	NM_001118885	exon3	c.G69C	p.R23S	.	.	193	171	175	1	.	131
GLRB	2743	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158043481	158043481	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GLRB	NM_001166061	exon4	c.230-1G>C	.	.	.	602	142	362	1	.	92
GMPPB	29925	broad.mit.edu	37	3	49759281	49759281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GMPPB	NM_013334	exon8	c.C1068A	p.D356E	.	.	71	4	47	0	.	90
GPR83	10888	ucsc.edu	37	11	94113887	94113887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GPR83	NM_016540	exon4	c.C700A	p.L234I	.	.	28	4	42	0	.	92
GRIN3A	116443	ucsc.edu	37	9	104499838	104499838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	GRIN3A	NM_133445	exon1	c.C424A	p.L142I	.	.	37	4	48	0	.	96
GUSBP1	728411	bcgsc.ca	37	5	21481995	21481995	+	RNA	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	46	5	28	0	.	.
HDAC3	8841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141008783	141008783	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HDAC3	NM_003883	exon7	c.G567A	p.T189T	.	.	115	52	109	0	.	227
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43036067	43036067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HNF4A	NM_178849	exon3	c.C337T	p.R113C	.	.	76	31	75	0	.	227
HOMER1	9456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78734957	78734957	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HOMER1	NM_004272	exon5	c.T403T	p.W135W	.	.	116	57	94	0	.	90
HOXA4	3201	hgsc.bcm.edu	37	7	27169934	27169934	+	Missense_Mutation	SNP	A	A	G	rs10251056		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HOXA4	NM_002141	exon1	c.T419C	p.L140P	.	.	9	9	0	0	A|0.081;G|0.919	153
HTT	3064	broad.mit.edu	37	4	3208301	3208301	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HTT	NM_002111	exon43	c.G5797T	p.E1933X	.	.	195	4	167	0	.	281
HYDIN	54768	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70841914	70841914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	HYDIN	NM_001270974	exon86	c.G14935T	p.G4979C	.	.	122	62	93	1	.	92
IARS2	55699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220276901	220276901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IARS2	NM_018060	exon8	c.T1063A	p.S355T	.	.	82	20	58	0	.	94
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	82912269	82912269	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IBTK	NM_015525	exon18	c.2705delA	p.N902fs	.	.	127	107	205	0	.	92
IFNA4	3441	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21187461	21187461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IFNA4	NM_021068	exon1	c.T70C	p.C24R	.	.	370	160	304	0	.	92
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15233713	15233713	+	Silent	SNP	C	C	A	rs145335506	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ILVBL	NM_006844	exon5	c.G594T	p.S198S	.	.	43	16	31	0	C|1.000;T|0.000	92
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	1878852	1878852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	IRX4	NM_016358	exon5	c.A791G	p.D264G	.	.	193	80	170	0	.	226
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52860642	52860642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ITIH4	NM_001166449	exon5	c.A545G	p.Q182R	.	.	53	32	48	0	.	46
JAG1	182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	10654131	10654131	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	JAG1	NM_000214	exon1	c.C48A	p.L16L	.	.	73	26	48	0	.	1273
KAT6B	23522	broad.mit.edu	37	10	76732301	76732301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_012330	exon7	c.A965G	p.K322R	.	.	300	5	232	0	.	.
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30032269	30032269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCNA4	NM_002233	exon2	c.G1957T	p.V653L	.	.	120	50	94	0	.	517
KCNK6	9424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38818018	38818018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCNK6	NM_004823	exon3	c.C917T	p.T306I	.	.	40	21	41	0	.	91
KCTD20	222658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36442832	36442832	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KCTD20	NM_173562	exon3	c.C427G	p.L143V	.	.	231	74	112	0	.	92
KDM4A	9682	broad.mit.edu	37	1	44128612	44128612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KDM4A	NM_014663	exon5	c.G477T	p.L159F	.	.	175	6	191	0	.	227
KIAA0586	9786	broad.mit.edu	37	14	59006805	59006805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KIAA0586	NM_001244189	exon32	c.G4605T	p.M1535I	.	.	170	5	137	0	.	23
KIAA1217	56243	broad.mit.edu	37	10	24835210	24835210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KIAA1217	NM_019590	exon21	c.G5789T	p.S1930I	.	.	184	6	170	0	.	98
KRT33B	3884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39521232	39521232	+	Missense_Mutation	SNP	G	G	A	rs199838257		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KRT33B	NM_002279	exon6	c.C896T	p.T299M	.	.	132	72	87	1	G|0.999;A|0.000	90
KRTAP4-11	653240	ucsc.edu	37	17	39274291	39274291	+	Missense_Mutation	SNP	T	T	C	rs200214744		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_033059	exon1	c.A277G	p.M93V	.	.	44	10	31	7	.	.
KRTAP4-5	85289	bcgsc.ca	37	17	39305619	39305619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KRTAP4-5	NM_033188	exon1	c.C401A	p.S134Y	.	.	94	8	59	0	.	90
KRTAP4-5	85289	ucsc.edu	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	KRTAP4-5	NM_033188	exon1	c.T235A	p.C79S	.	.	37	11	18	0	A|0.354;T|0.646	90
LATS1	9113	broad.mit.edu	37	6	150004657	150004657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LATS1	NM_001270519	exon4	c.C1568A	p.P523Q	.	.	97	4	116	0	.	992
LDHD	197257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75147448	75147448	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LDHD	NM_153486	exon8	c.G1140T	p.T380T	.	.	61	31	53	0	.	90
LEMD2	221496	broad.mit.edu	37	6	33746048	33746048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LEMD2	NM_181336	exon6	c.C1127A	p.A376D	.	.	261	7	112	0	.	90
LMO7	4008	broad.mit.edu	37	13	76414234	76414234	+	Silent	SNP	G	G	T	rs146792864	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LMO7	NM_015842	exon18	c.G2766T	p.S922S	.	.	133	4	127	1	G|0.999;A|0.000	586
LOC100129794	0	broad.mit.edu	37	14	37641732	37641732	+	RNA	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	19	7	12	0	.	.
LOC100132891	0	broad.mit.edu;bcgsc.ca	37	8	72755807	72755807	+	RNA	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	80	39	62	0	.	.
LOC100287072	0	bcgsc.ca	37	17	20639078	20639078	+	RNA	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	157	98	94	1	.	.
LOC389705	0	bcgsc.ca	37	9	15000441	15000441	+	RNA	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	37	17	29	0	.	.
LOC643923	0	broad.mit.edu;mdanderson.org	37	11	107462580	107462580	+	RNA	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	84	40	95	0	.	.
LOC96610	0	broad.mit.edu	37	22	22661378	22661378	+	RNA	SNP	T	T	C	rs76530335		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	48	13	35	1	C|1.000;|0.000	.
LRIT2	340745	broad.mit.edu	37	10	85982033	85982033	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LRIT2	NM_001017924	exon3	c.C1296A	p.C432X	.	.	84	4	52	0	.	92
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141707938	141707938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LRP1B	NM_018557	exon20	c.G3002T	p.G1001V	.	.	172	60	111	0	.	311
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46912023	46912023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LRP4	NM_002334	exon14	c.G1720A	p.G574S	.	.	62	33	67	0	.	94
LRRC37A	9884	broad.mit.edu	37	17	44409918	44409918	+	Missense_Mutation	SNP	C	C	T	rs3196690		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LRRC37A	NM_014834	exon10	c.C4705T	p.L1569F	.	.	761	18	440	3	.	22
LSR	51599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	35740010	35740010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LSR	NM_205834	exon1	c.C229T	p.L77F	.	.	90	31	72	0	.	90
LTK	4058	broad.mit.edu;mdanderson.org	37	15	41803628	41803628	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LTK	NM_001135685	exon6	c.G806C	p.G269A	.	.	21	9	12	0	.	1377
LYG2	254773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99861785	99861785	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	LYG2	NM_175735	exon4	c.T321C	p.H107H	.	.	71	38	52	0	.	91
MAK	4117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10784806	10784806	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MAK	NM_005906	exon12	c.1317-1G>T	.	.	.	191	67	80	0	.	335
MDH2	4191	broad.mit.edu	37	7	75694140	75694140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MDH2	NM_005918	exon8	c.G754T	p.A252S	.	.	235	8	99	0	.	228
MICALCL	84953	hgsc.bcm.edu	37	11	12316389	12316389	+	Missense_Mutation	SNP	A	A	C	rs3812754		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MICALCL	NM_032867	exon3	c.A1411C	p.T471P	.	.	7	7	5	0	A|0.649;C|0.351	91
MIR891B	100126304	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	145082629	145082629	+	RNA	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	60	56	68	0	.	.
MLL3	58508	bcgsc.ca	37	7	151932949	151932949	+	Missense_Mutation	SNP	C	C	A	rs77173318		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MLL3	NM_170606	exon16	c.G2722T	p.G908C	.	.	406	22	242	8	.	1398
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	36221665	36221665	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MLL4	NM_014727	exon26	c.C5334A	p.C1778X	.	.	85	32	66	0	.	697
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61275080	61275080	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MNAT1	NM_001177963	exon4	c.C354T	p.T118T	.	.	475	231	442	1	.	523
MOB3B	79817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27330605	27330605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_024761	exon4	c.A631G	p.T211A	.	.	112	54	113	0	.	.
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60767109	60767109	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MRC2	NM_006039	exon24	c.G3561A	p.L1187L	.	.	28	17	27	0	.	117
MTF1	4520	broad.mit.edu	37	1	38280845	38280845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MTF1	NM_005955	exon11	c.A2225G	p.E742G	.	.	128	4	118	0	.	92
MUC17	140453	broad.mit.edu	37	7	100692254	100692254	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MUC17	NM_001040105	exon5	c.12663+1G>T	.	.	.	204	5	91	0	.	95
MUC4	4585	broad.mit.edu	37	3	195509278	195509278	+	Missense_Mutation	SNP	T	T	G	rs77344255		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MUC4	NM_018406	exon2	c.A9173C	p.H3058P	.	.	87	12	62	3	T|0.250;G|0.750	90
MUC5B	727897	broad.mit.edu	37	11	1269631	1269631	+	Missense_Mutation	SNP	G	G	T	rs200229205	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_002458	exon31	c.G11521T	p.A3841S	.	.	366	6	270	1	.	.
MUC5B	727897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1267649	1267649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_002458	exon31	c.C9539T	p.T3180M	.	.	239	42	207	1	.	.
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10223741	10223741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYH13	NM_003802	exon25	c.G3184A	p.D1062N	.	.	81	69	90	0	.	6
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10549294	10549294	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYH3	NM_002470	exon11	c.G954A	p.E318E	.	.	189	11	211	0	.	95
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1915791	1915791	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	MYT1L	NM_015025	exon13	c.1703+1G>T	.	.	.	95	26	40	0	.	95
NADSYN1	55191	broad.mit.edu;bcgsc.ca	37	11	71202924	71202924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NADSYN1	NM_018161	exon18	c.A1739C	p.D580A	.	.	95	23	69	1	.	92
NBPF14	25832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	148004618	148004618	+	Missense_Mutation	SNP	T	T	C	rs143743039		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NBPF14	NM_015383	exon22	c.A2696G	p.N899S	.	.	453	265	410	0	T|1.000;C|0.000	91
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	34	4	25	0	C|0.500;T|0.500	.
NEFH	4744	bcgsc.ca	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	rs200984527		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NEFH	NM_021076	exon4	c.1952_1975del	p.651_659del	.	.	243	4	191	0	.	90
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	273	100	195	1	A|0.500;T|0.500	90
NIN	51199	bcgsc.ca	37	14	51223511	51223511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NIN	NM_020921	exon18	c.C4237A	p.H1413N	.	.	128	7	122	0	.	229
NIPAL3	57185	hgsc.bcm.edu	37	1	24768656	24768656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NIPAL3	NM_020448	exon4	c.G274T	p.A92S	.	.	67	4	58	0	.	90
NLRP13	126204	bcgsc.ca	37	19	56413513	56413513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NLRP13	NM_176810	exon9	c.C2677A	p.Q893K	.	.	126	6	109	0	.	211
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69331285	69331285	+	Missense_Mutation	SNP	A	A	G	rs148791297	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NOX5	NM_024505	exon9	c.A1460G	p.Y487C	.	.	148	67	94	0	A|0.999;G|0.001	136
NR3C1	2908	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142680054	142680054	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NR3C1	NM_001024094	exon5	c.A1746T	p.I582I	.	.	130	66	97	1	.	92
NUDT7	283927	broad.mit.edu	37	16	77769724	77769724	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NUDT7	NM_001105663	exon3	c.190-1G>T	.	.	.	121	6	79	0	.	70
NXF3	56000	broad.mit.edu;bcgsc.ca	37	X	102337749	102337749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	NXF3	NM_022052	exon8	c.C719A	p.A240E	.	.	64	5	54	0	.	205
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228467595	228467595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OBSCN	NM_001271223	exon33	c.C8757T	p.C2919C	.	.	155	51	80	0	.	403
OGFOD2	79676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	123461262	123461262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OGFOD2	NM_024623	exon4	c.T71G	p.L24R	.	.	90	44	60	0	.	69
OR10A5	144124	bcgsc.ca	37	11	6866904	6866904	+	Translation_Start_Site	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR10A5	.	.	.	.	.	.	144	59	117	0	.	71
OR10Q1	219960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57995924	57995924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	OR10Q1,NS,carcinoma,+2	OR10Q1	NM_001004471	exon1	c.C424T	p.R142C	.	.	46	23	61	0	.	70
OR2G2	81470	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247752217	247752217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR2G2	NM_001001915	exon1	c.G556A	p.V186M	.	.	281	89	162	1	.	68
OR2T1	26696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248569357	248569357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR2T1	NM_030904	exon1	c.C62A	p.T21K	.	.	216	74	125	1	.	69
OR52N1	79473	broad.mit.edu	37	11	5809954	5809954	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR52N1	NM_001001913	exon1	c.C93T	p.F31F	.	.	40	4	30	0	.	69
OR52N1	79473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5809718	5809718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OR52N1	NM_001001913	exon1	c.C329T	p.T110I	.	.	68	37	45	0	.	69
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72921033	72921033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OTOP2	NM_178160	exon2	c.G306T	p.W102C	.	.	62	22	40	0	.	134
OXSR1	9943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38292941	38292941	+	Missense_Mutation	SNP	G	G	T	rs145431865	byfrequency;alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	OXSR1	NM_005109	exon16	c.G1423T	p.D475Y	.	.	163	84	144	0	G|0.999;A|0.001	311
PAPSS2	9060	bcgsc.ca	37	10	89505670	89505670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PAPSS2	NM_001015880	exon13	c.G1803T	p.M601I	.	.	81	5	81	1	.	493
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140208380	140208380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHA6	NM_018909	exon1	c.T704C	p.V235A	.	.	170	84	148	0	.	92
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140347864	140347864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHAC2	NM_031883	exon1	c.A1513G	p.T505A	.	.	156	66	126	0	.	26
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu	37	5	140481966	140481966	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PCDHB3	NM_018937	exon1	c.1733delG	p.R578fs	.	.	47	11	28	0	.	92
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140773532	140773532	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_014004	exon1	c.T1152C	p.C384C	.	.	125	55	117	0	.	.
PENK	5179	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	57353832	57353832	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PENK	NM_001135690	exon4	c.A803G	p.X268X	.	.	46	40	78	0	.	517
PHB2	11331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7076910	7076910	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PHB2	.	.	.	.	.	.	56	24	43	0	.	48
PHOSPHO1	162466	broad.mit.edu;mdanderson.org	37	17	47302389	47302389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PHOSPHO1	NM_001143804	exon3	c.G98T	p.C33F	.	.	11	6	10	0	.	90
PIEZO1	9780	broad.mit.edu	37	16	88786842	88786842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001142864	exon41	c.C5900A	p.A1967D	.	.	78	5	58	0	.	.
PKHD1L1	93035	broad.mit.edu	37	8	110474075	110474075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PKHD1L1	NM_177531	exon48	c.G7321T	p.V2441F	.	.	107	5	89	0	.	145
PKIB	5570	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	123039083	123039083	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PKIB	NM_001270394	exon7	c.A165G	p.K55K	.	.	11	8	16	0	.	90
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20466020	20466020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PLA2G2F	NM_022819	exon1	c.C100T	p.P34S	.	.	70	36	65	0	.	91
PLB1	151056	broad.mit.edu	37	2	28828786	28828786	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PLB1	NM_153021	exon42	c.C3028T	p.Q1010X	.	.	179	7	149	0	.	141
PLEKHM3	389072	broad.mit.edu	37	2	208866092	208866092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PLEKHM3	NM_001080475	exon2	c.C272A	p.A91D	.	.	68	5	59	0	.	23
POTEC	388468	broad.mit.edu	37	18	14523463	14523463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	POTEC	NM_001137671	exon8	c.A1241T	p.E414V	.	.	836	10	874	0	.	3
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32122457	32122457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PPT2	NM_138717	exon2	c.C104T	p.P35L	.	.	127	39	63	0	.	44
PREX2	80243	broad.mit.edu	37	8	68942868	68942868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PREX2	NM_025170	exon6	c.G680T	p.W227L	.	.	135	8	100	0	.	390
PRF1	5551	broad.mit.edu	37	10	72360502	72360502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PRF1	NM_001083116	exon2	c.C157A	p.L53I	.	.	170	5	120	0	.	578
PRKACG	5568	hgsc.bcm.edu	37	9	71629038	71629039	+	Splice_Site	INS	-	-	GCGGCGGCG	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PRKACG	.	.	.	.	.	.	46	23	18	0	.	1061
PROZ	8858	broad.mit.edu	37	13	113825971	113825971	+	Missense_Mutation	SNP	G	G	T	rs141140968	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PROZ	NM_001256134	exon9	c.G821T	p.R274L	.	.	55	3	44	0	G|0.999;A|0.000	90
PSTPIP1	9051	broad.mit.edu;ucsc.edu	37	15	77310541	77310541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	PSTPIP1	NM_003978	exon2	c.T89C	p.L30P	.	.	105	10	113	2	.	23
RAB3B	5865	broad.mit.edu	37	1	52442594	52442594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RAB3B	NM_002867	exon2	c.C196A	p.R66S	.	.	219	5	162	0	.	228
RAF1	5894	broad.mit.edu	37	3	12650396	12650396	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RAF1	NM_002880	exon5	c.C450A	p.A150A	.	.	237	5	158	0	.	1404
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170598268	170598268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RANBP17	NM_022897	exon16	c.T1843G	p.F615V	.	.	163	71	153	0	.	524
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113553809	113553809	+	Missense_Mutation	SNP	C	C	T	rs150792397		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RASAL1	NM_004658	exon10	c.G779A	p.R260H	.	.	131	61	107	0	C|1.000;T|0.000	229
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43694401	43694401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RASGEF1A	NM_145313	exon9	c.G1012T	p.A338S	.	.	69	25	58	0	.	227
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29977613	29977613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RBMS3	NM_001177712	exon12	c.T1015C	p.S339P	.	.	298	161	198	0	.	90
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29977619	29977619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RBMS3	NM_001177712	exon12	c.C1021A	p.Q341K	.	.	293	160	204	0	.	90
REST	5978	broad.mit.edu	37	4	57796075	57796075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	REST	NM_001193508	exon4	c.G1051T	p.A351S	.	.	284	6	234	0	.	232
RNF145	153830	broad.mit.edu	37	5	158630621	158630621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RNF145	NM_001199380	exon2	c.C95A	p.A32D	.	.	154	5	122	0	.	525
RNF213	57674	hgsc.bcm.edu	37	17	78327327	78327327	+	Missense_Mutation	SNP	G	G	T	rs113011315	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RNF213	NM_001256071	exon34	c.G10439T	p.R3480L	.	.	96	4	66	0	G|0.500;A|0.500	577
RNF219	79596	broad.mit.edu;bcgsc.ca	37	13	79190249	79190249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RNF219	NM_024546	exon6	c.C1647A	p.D549E	.	.	110	6	98	0	.	135
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213415976	213415976	+	Silent	SNP	C	C	T	rs147823242	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	RPS6KC1	NM_012424	exon12	c.C2886T	p.A962A	.	.	242	66	134	0	C|0.999;T|0.001	417
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50407317	50407317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SALL4	NM_020436	exon2	c.C1705T	p.L569F	.	.	119	58	72	0	.	92
SARM1	23098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26723269	26723269	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_015077	exon10	c.C2136T	p.T712T	.	.	103	59	70	0	.	.
SCLY	51540	broad.mit.edu	37	2	238991957	238991957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCLY	NM_016510	exon7	c.G870T	p.M290I	.	.	211	7	126	0	.	92
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38921513	38921513	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN11A	NM_014139	exon19	c.A3321G	p.L1107L	.	.	107	38	93	0	.	99
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166898866	166898866	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN1A	NM_001165963	exon12	c.A2112G	p.L704L	.	.	150	63	108	0	.	147
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166245504	166245504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SCN2A	NM_001040143	exon26	c.G5188T	p.D1730Y	.	.	318	56	225	0	.	142
SH3RF1	57630	broad.mit.edu	37	4	170038910	170038910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SH3RF1	NM_020870	exon9	c.C1541A	p.A514D	.	.	209	6	144	0	.	567
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19786089	19786089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC24A2	NM_001193288	exon1	c.A776G	p.N259S	.	.	137	32	102	0	.	517
SLC25A16	8034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70243246	70243246	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC25A16	NM_152707	exon9	c.T942A	p.S314S	.	.	42	9	45	0	.	90
SLC5A1	6523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32487698	32487698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLC5A1	NM_000343	exon11	c.A1229G	p.Y410C	.	.	91	42	68	0	.	91
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	92397220	92397220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SLCO3A1	NM_013272	exon1	c.A82G	p.K28E	.	.	100	38	113	0	.	91
SMOC2	64094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168927046	168927046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SMOC2	NM_022138	exon3	c.G277A	p.E93K	.	.	71	55	108	0	.	91
SNRNP200	23020	broad.mit.edu	37	2	96955039	96955039	+	Missense_Mutation	SNP	G	G	T	rs148878242	alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SNRNP200	NM_014014	exon22	c.C3019A	p.P1007T	.	.	173	5	97	1	G|1.000;A|0.000	162
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22676816	22676816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SPAG6	NM_172242	exon6	c.T743C	p.V248A	.	.	103	45	90	0	.	153
SPG11	80208	broad.mit.edu	37	15	44955633	44955633	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SPG11	NM_025137	exon1	c.C213A	p.G71G	.	.	110	4	106	0	.	95
SSX2IP	117178	broad.mit.edu	37	1	85117577	85117577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	SSX2IP	NM_001166417	exon13	c.C1493A	p.A498D	.	.	371	6	304	2	.	92
TARS	6897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	33448802	33448802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TARS	NM_152295	exon3	c.G294A	p.W98X	.	.	136	62	112	0	.	92
TBX2	6909	broad.mit.edu;mdanderson.org	37	17	59482800	59482800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TBX2	NM_005994	exon6	c.G1289A	p.R430Q	.	.	16	6	16	0	.	226
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179604969	179604969	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TDRD5	NM_173533	exon9	c.G1467C	p.R489R	.	.	89	36	97	0	.	94
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46660441	46660441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TDRD6	NM_001168359	exon1	c.A4576G	p.T1526A	.	.	284	88	126	0	.	138
TFDP2	7029	broad.mit.edu	37	3	141682751	141682751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TFDP2	NM_001178139	exon10	c.C787A	p.Q263K	.	.	197	5	145	0	.	226
TFPT	29844	broad.mit.edu	37	19	54611430	54611430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TFPT	NM_013342	exon5	c.C545A	p.A182D	.	.	159	6	104	0	.	658
THADA	63892	broad.mit.edu	37	2	43571361	43571361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	THADA	NM_001083953	exon30	c.C4243A	p.Q1415K	.	.	229	6	159	1	.	228
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155172876	155172876	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	THBS3	NM_007112	exon8	c.808+1G>T	.	.	.	143	58	103	0	.	222
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	138414638	138414638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	THSD7B	.	.	.	.	.	.	124	44	106	0	.	75
TMEM50A	23585	bcgsc.ca	37	1	25667024	25667024	+	Missense_Mutation	SNP	G	G	T	rs147456847	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TMEM50A	NM_014313	exon2	c.G47T	p.W16L	.	.	117	6	118	0	G|0.999;T|0.001	90
TMEM59	9528	broad.mit.edu	37	1	54518695	54518695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TMEM59	NM_004872	exon1	c.A167T	p.Y56F	.	.	212	7	192	0	.	90
TMPPE	643853	broad.mit.edu	37	3	33134707	33134707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TMPPE	NM_001039770	exon2	c.C981A	p.D327E	.	.	169	5	105	0	.	90
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218700829	218700829	+	Missense_Mutation	SNP	G	G	T	rs141836163	byfrequency;alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TNS1	NM_022648	exon18	c.C2738A	p.P913H	.	.	128	69	88	0	G|0.999;A|0.001	156
TOP2A	7153	ucsc.edu;bcgsc.ca	37	17	38560724	38560724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TOP2A	NM_001067	exon18	c.C2066A	p.T689N	.	.	163	87	118	2	.	655
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1488375	1488375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TPO	NM_175719	exon9	c.C1346T	p.T449I	.	.	239	83	149	0	.	332
TPRG1	285386	broad.mit.edu	37	3	188925212	188925212	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TPRG1	NM_198485	exon2	c.G39T	p.V13V	.	.	191	6	150	0	.	90
TREML2	79865	hgsc.bcm.edu	37	6	41166095	41166095	+	Missense_Mutation	SNP	T	T	C	rs141238140	byfrequency	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TREML2	NM_024807	exon2	c.A128G	p.Y43C	.	.	126	9	57	0	T|1.000;C|0.000	91
TREML2	79865	hgsc.bcm.edu	37	6	41166123	41166123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TREML2	NM_024807	exon2	c.G100A	p.G34R	.	.	107	8	52	0	.	91
TRIM59	286827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	160156300	160156300	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TRIM59	NM_173084	exon3	c.A672T	p.R224S	.	.	209	64	119	0	.	658
TRIOBP	11078	hgsc.bcm.edu	37	22	38119757	38119757	+	Missense_Mutation	SNP	A	A	T	rs199535040		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TRIOBP	NM_001039141	exon7	c.A1194T	p.Q398H	.	.	187	13	144	0	.	136
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13220610	13220610	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TRMT1	NM_001136035	exon10	c.G1149A	p.E383E	.	.	61	20	41	0	.	92
TSPAN13	27075	broad.mit.edu	37	7	16815971	16815971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TSPAN13	NM_014399	exon2	c.G199T	p.A67S	.	.	446	8	249	1	.	515
TTC30B	150737	bcgsc.ca	37	2	178416097	178416097	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_152517	exon1	c.T1395A	p.A465A	.	.	988	396	738	2	.	.
TTLL7	79739	broad.mit.edu	37	1	84385418	84385418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TTLL7	NM_024686	exon13	c.C1464A	p.F488L	.	.	350	8	314	0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179590676	179590676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TTN	NM_001267550	exon70	c.G20373C	p.E6791D	.	.	234	128	169	0	.	636
TYSND1	219743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71899886	71899886	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	TYSND1	NM_173555	exon4	c.A1495T	p.S499C	.	.	168	76	141	0	.	135
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49152692	49152692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	USP19	NM_001199161	exon13	c.C1991T	p.T664I	.	.	64	22	55	1	.	663
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120182988	120182988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	USP53	NM_019050	exon11	c.G941T	p.W314L	.	.	112	56	91	0	.	660
VEGFB	7423	broad.mit.edu	37	11	64005048	64005048	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	VEGFB	NM_001243733	exon6	c.A466C	p.T156P	.	.	26	9	35	4	.	90
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183956399	183956399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_138345	exon13	c.C1940G	p.S647C	.	.	124	28	94	0	.	.
WDR49	151790	broad.mit.edu	37	3	167293726	167293726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WDR49	NM_178824	exon4	c.T466C	p.Y156H	.	.	92	3	78	0	.	155
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85561679	85561679	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WDR63	NM_145172	exon11	c.T1239A	p.I413I	.	.	152	53	136	0	.	95
WDR65	149465	broad.mit.edu	37	1	43672577	43672577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WDR65	NM_001195831	exon10	c.A1729C	p.T577P	.	.	70	13	59	6	.	91
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54358525	54358525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WDR7	NM_052834	exon8	c.G796A	p.V266I	.	.	66	16	77	0	.	93
WTIP	126374	hgsc.bcm.edu	37	19	34973413	34973413	+	Silent	SNP	T	T	C	rs1465433		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	WTIP	NM_001080436	exon1	c.T534C	p.A178A	.	.	4	4	0	0	G|0.965;C|0.003	68
ZAN	7455	broad.mit.edu	37	7	100336203	100336203	+	RNA	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZAN	.	.	.	.	.	.	326	7	163	1	.	142
ZBTB41	360023	bcgsc.ca	37	1	197145794	197145794	+	Missense_Mutation	SNP	G	G	T	rs138771164	byfrequency;alternate_allele	TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZBTB41	NM_194314	exon7	c.C1779A	p.H593Q	.	.	59	5	63	0	G|0.999;A|0.001	92
ZC3H18	124245	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88696976	88696976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZC3H18	NM_144604	exon17	c.G2650T	p.A884S	.	.	18	9	30	0	.	69
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72828036	72828036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZFHX3	NM_006885	exon9	c.G8545C	p.D2849H	.	.	88	44	72	0	.	72
ZNF296	162979	bcgsc.ca	37	19	45579025	45579025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZNF296	NM_145288	exon2	c.C394A	p.H132N	.	.	86	6	85	1	.	90
ZNF320	162967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53384284	53384284	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZNF320	NM_207333	exon4	c.T1095G	p.A365A	.	.	97	41	60	0	.	91
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	302	100	136	2	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	253	68	123	3	.	.
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47865291	47865291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZNFX1	NM_021035	exon14	c.T4270C	p.Y1424H	.	.	53	28	48	0	.	24
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135976732	135976732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZRANB3	NM_032143	exon16	c.G2267A	p.S756N	.	.	287	86	215	0	.	658
ZXDC	79364	hgsc.bcm.edu	37	3	126194357	126194357	+	Missense_Mutation	SNP	G	G	C	rs7624748		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	ZXDC	NM_025112	exon1	c.C352G	p.P118A	.	.	9	9	0	0	G|0.098;C|0.902	91
RP11-395L14.17	0	bcgsc.ca	37	2	114415584	114415585	+	RNA	DNP	AT	AT	GA	novel		TCGA-DD-A73E-01A-12D-A32G-10	TCGA-DD-A73E-10A-01D-A32G-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea	004c3f02-8bf1-4c76-9fb6-8a3c75687ce2	.	.	.	.	.	.	.	.	.	.	.	.	.	
