Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADACL3	126767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12785194	12785194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AADACL3	NM_001103170	exon4	c.G284A	p.R95H	.	.	136	36	114	0	.	22
AAK1	22848	broad.mit.edu	37	2	69754396	69754396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AAK1	NM_014911	exon9	c.C927A	p.Y309X	.	.	174	6	141	0	.	333
ABCA13	154664	broad.mit.edu	37	7	48315347	48315347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ABCA13	NM_152701	exon17	c.G6084T	p.M2028I	.	.	97	5	87	0	.	521
ABTB2	25841	broad.mit.edu	37	11	34378369	34378369	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ABTB2	NM_145804	exon1	c.C762A	p.G254G	.	.	109	4	89	2	.	91
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109677646	109677646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ACACB	NM_001093	exon34	c.C4674A	p.F1558L	.	.	66	12	50	0	.	98
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41895734	41895734	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ACO2	NM_001098	exon2	c.C41G	p.A14G	.	.	27	10	19	0	.	290
ADCY7	113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50339757	50339757	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ADCY7	NM_001114	exon13	c.C1749T	p.R583R	.	.	113	41	106	0	.	91
AGRN	375790	broad.mit.edu	37	1	976939	976939	+	Missense_Mutation	SNP	G	G	T	rs144294015	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AGRN	NM_198576	exon6	c.G1034T	p.R345L	.	.	26	3	27	0	G|1.000;A|0.000	136
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73799982	73799982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ALMS1	NM_015120	exon16	c.G10975A	p.V3659M	.	.	150	37	98	0	.	142
ANKRD30BP3	338579	broad.mit.edu	37	10	45652326	45652326	+	RNA	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	.	.	.	.	.	.	42	20	36	0	.	.
AP1M1	8907	hgsc.bcm.edu	37	19	16338431	16338431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AP1M1	NM_001130524	exon8	c.A782G	p.N261S	.	.	93	11	95	0	.	156
APC	324	broad.mit.edu	37	5	112177060	112177060	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	APC	NM_001127510	exon17	c.T5769A	p.P1923P	.	.	194	6	187	0	.	12026
ARSD	414	broad.mit.edu	37	X	2835884	2835884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ARSD	NM_001669	exon5	c.C824A	p.A275E	.	.	198	4	171	1	.	130
ATP4A	495	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36050844	36050844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ATP4A	NM_000704	exon7	c.G919A	p.A307T	.	.	185	53	183	1	.	91
ATP5D	513	broad.mit.edu	37	19	1242499	1242499	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ATP5D	NM_001001975	exon2	c.G186T	p.T62T	.	.	206	6	176	0	.	90
ATP6V1G2-DDX39B	100532737	ucsc.edu	37	6	31514353	31514353	+	RNA	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	.	.	.	.	.	.	36	4	30	0	.	.
AUP1	550	broad.mit.edu;bcgsc.ca	37	2	74754660	74754660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AUP1	NM_181575	exon9	c.T899A	p.L300Q	.	.	85	5	62	0	.	90
BAHCC1	57597	broad.mit.edu	37	17	79425364	79425364	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	BAHCC1	.	.	.	.	.	.	70	10	36	5	.	23
BARD1	580	broad.mit.edu	37	2	215609819	215609819	+	Silent	SNP	G	G	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	BARD1	NM_000465	exon9	c.C1875G	p.L625L	.	.	738	7	619	0	.	415
BDP1	55814	broad.mit.edu	37	5	70779687	70779687	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	BDP1	NM_018429	exon8	c.G1033T	p.E345X	.	.	440	7	362	2	.	92
BNC2	54796	bcgsc.ca	37	9	16437496	16437496	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	BNC2	NM_017637	exon6	c.C696A	p.R232R	.	.	69	5	46	0	.	92
C10orf2	56652	bcgsc.ca	37	10	102748801	102748801	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	C10orf2	NM_021830	exon1	c.G834T	p.L278L	.	.	118	7	108	0	.	69
C2orf66	401027	broad.mit.edu	37	2	197674036	197674036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	C2orf66	NM_213608	exon1	c.C76A	p.L26I	.	.	106	5	75	0	.	68
C3orf72	401089	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	138669208	138669208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	C3orf72	NM_001040061	exon3	c.G322A	p.A108T	.	.	76	26	51	0	.	22
C7orf43	55262	hgsc.bcm.edu;broad.mit.edu	37	7	99754128	99754128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	C7orf43	NM_018275	exon8	c.C1121A	p.A374D	.	.	118	5	81	0	.	90
CACNA1G	8913	bcgsc.ca	37	17	48678424	48678424	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CACNA1G	NM_001256360	exon19	c.G3804T	p.L1268L	.	.	90	6	82	0	.	67
CACNB1	782	broad.mit.edu	37	17	37341094	37341094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CACNB1	NM_199247	exon8	c.C807A	p.D269E	.	.	155	4	125	0	.	154
CAMK2N1	55450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	20811831	20811831	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CAMK2N1	NM_018584	exon1	c.C42A	p.P14P	.	.	43	14	42	0	.	93
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7723459	7723459	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CAMTA1	NM_015215	exon9	c.C852T	p.R284R	.	.	135	44	126	0	.	520
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37893159	37893159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CARD10	NM_014550	exon12	c.G1814A	p.R605Q	.	.	149	80	84	0	.	662
CCDC79	283847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66822199	66822199	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001136505	exon6	c.T273G	p.V91V	.	.	461	147	364	1	.	.
CDH2	1000	broad.mit.edu	37	18	25572719	25572719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CDH2	NM_001792	exon9	c.C1244A	p.A415D	.	.	104	5	112	2	.	525
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138289885	138289885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CEP70	NM_024491	exon5	c.A275G	p.Q92R	.	.	210	59	182	0	.	69
CFHR5	81494	broad.mit.edu	37	1	196973810	196973810	+	Silent	SNP	G	G	T	rs77159278	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CFHR5	NM_030787	exon9	c.G1350T	p.G450G	.	.	267	6	155	0	G|0.998;A|0.002	154
CHPF	79586	broad.mit.edu	37	2	220404268	220404268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CHPF	NM_024536	exon4	c.C2165A	p.A722E	.	.	210	5	173	0	.	90
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61981053	61981053	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CHRNA4	NM_000744	exon5	c.C1710T	p.G570G	.	.	127	61	82	0	.	91
CLDN14	23562	broad.mit.edu	37	21	37833661	37833661	+	Silent	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CLDN14	NM_144492	exon3	c.A333C	p.T111T	.	.	69	10	40	5	.	90
CNTN1	1272	broad.mit.edu	37	12	41327572	41327572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CNTN1	NM_001256063	exon9	c.G877T	p.A293S	.	.	223	6	193	0	.	1149
COL4A6	1288	ucsc.edu;bcgsc.ca	37	X	107402853	107402853	+	Missense_Mutation	SNP	G	G	T	rs201417622	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	COL4A6	NM_001847	exon44	c.C4654A	p.P1552T	.	.	257	106	202	2	G|0.999;C|0.001	199
COX1	5742	broad.mit.edu	37	MT	5903	5903	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	.	.	.	.	.	.	40	18	17	0	.	.
CROT	54677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86986879	86986879	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CROT	NM_001143935	exon4	c.T172C	p.L58L	.	.	32	9	28	0	.	280
CTLA4	1493	broad.mit.edu	37	2	204736162	204736162	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CTLA4	NM_005214	exon3	c.G519T	p.G173G	.	.	158	7	120	0	.	90
CXorf36	79742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	45011086	45011086	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CXorf36	NM_176819	exon5	c.G1113A	p.Q371Q	.	.	149	53	153	0	.	130
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40498275	40498275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CXorf38	NM_144970	exon3	c.A457C	p.K153Q	.	.	109	39	86	0	.	131
CYP4A11	1579	broad.mit.edu	37	1	47395874	47395874	+	Missense_Mutation	SNP	A	A	C	rs45475502		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CYP4A11	NM_000778	exon12	c.T1473G	p.I491M	.	.	144	5	133	0	.	94
DCC	1630	broad.mit.edu;bcgsc.ca	37	18	50278659	50278659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DCC	NM_005215	exon2	c.G327T	p.K109N	.	.	190	8	126	1	.	225
DEPDC1	55635	broad.mit.edu	37	1	68960212	68960212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DEPDC1	NM_017779	exon2	c.C215A	p.T72N	.	.	374	9	333	1	.	90
DMXL2	23312	broad.mit.edu;bcgsc.ca	37	15	51757753	51757761	+	Splice_Site	DEL	CCAAACTCA	CCAAACTCA	-	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	CCAAACTCA	CCAAACTCA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DMXL2	.	.	.	.	.	.	207	32	204	0	.	99
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65116351	65116351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DPF2	NM_006268	exon10	c.C1048G	p.R350G	.	.	158	9	139	0	.	91
DPYD	1806	broad.mit.edu	37	1	97847971	97847971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DPYD	NM_000110	exon15	c.C1952T	p.T651M	.	.	482	11	417	0	.	278
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DSPP	NM_014208	exon5	c.T2643C	p.D881D	.	.	204	1	136	0	.	90
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158158157	158158157	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	EBF1	NM_024007	exon11	c.G1045C	p.E349Q	.	.	84	30	53	0	.	92
EEF1D	1936	broad.mit.edu	37	8	144671390	144671390	+	Silent	SNP	G	G	T	rs78886866	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	EEF1D	NM_001130053	exon3	c.C862A	p.R288R	.	.	62	5	53	1	.	228
ELFN2	114794	hgsc.bcm.edu	37	22	37769399	37769399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ELFN2	NM_052906	exon3	c.C2176A	p.Q726K	.	.	107	5	41	0	.	70
EML4	27436	broad.mit.edu	37	2	42483692	42483692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	EML4	NM_001145076	exon3	c.G260T	p.S87I	.	.	246	6	231	0	.	3734
ENPP2	5168	broad.mit.edu	37	8	120580415	120580415	+	Silent	SNP	G	G	T	rs149152218	byfrequency;alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ENPP2	NM_006209	exon23	c.C2287A	p.R763R	.	.	434	9	344	0	G|1.000;A|0.000	292
ENTHD1	150350	broad.mit.edu	37	22	40283402	40283402	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ENTHD1	NM_152512	exon3	c.349+2T>C	.	.	.	101	3	55	0	.	93
ERBB4	2066	broad.mit.edu	37	2	212495317	212495317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ERBB4	NM_001042599	exon17	c.C1949A	p.T650N	.	.	182	7	101	1	.	1461
ESYT2	57488	broad.mit.edu	37	7	158590749	158590749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ESYT2	NM_020728	exon3	c.C535A	p.P179T	.	.	100	4	85	0	.	92
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65301374	65301374	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	EYS	NM_001142800	exon26	c.T4386C	p.S1462S	.	.	79	22	79	0	.	660
F10	2159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113795287	113795287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	F10	NM_000504	exon5	c.A425T	p.E142V	.	.	117	27	91	0	.	227
FAM120B	84498	broad.mit.edu	37	6	170626573	170626573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM120B	NM_032448	exon2	c.G95T	p.S32I	.	.	165	5	119	0	.	91
FAM135B	51059	broad.mit.edu;bcgsc.ca	37	8	139164944	139164944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM135B	NM_015912	exon13	c.C1774A	p.L592I	.	.	72	6	70	0	.	31
FAM151A	338094	broad.mit.edu	37	1	55080446	55080446	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM151A	NM_176782	exon4	c.C502A	p.R168R	.	.	174	4	141	0	.	90
FAM186A	121006	broad.mit.edu	37	12	50745870	50745870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM186A	NM_001145475	exon4	c.A4745C	p.Q1582P	.	.	132	9	110	5	.	68
FAM35A	54537	broad.mit.edu	37	10	88911656	88911656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	FAM35A,NS,carcinoma,0	FAM35A	NM_019054	exon3	c.G545T	p.C182F	.	.	383	7	323	0	.	94
FAM46D	169966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79698375	79698375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM46D	NM_001170574	exon5	c.C337T	p.P113S	.	.	158	52	154	0	.	130
FCGRT	2217	broad.mit.edu;ucsc.edu	37	19	50017250	50017250	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FCGRT	NM_001136019	exon3	c.A185T	p.N62I	.	.	71	4	72	0	.	91
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76124503	76124503	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FILIP1	NM_015687	exon2	c.T186A	p.S62S	.	.	244	67	219	0	.	94
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79229242	79229242	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FRAS1	NM_001166133	exon15	c.T1557C	p.G519G	.	.	130	40	124	2	.	68
FRG1B	284802	broad.mit.edu	37	20	29625892	29625892	+	RNA	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FRG1B	.	.	.	.	.	.	350	9	275	1	.	22
FZD9	8326	broad.mit.edu	37	7	72849736	72849736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FZD9	NM_003508	exon1	c.G1399T	p.V467F	.	.	93	4	78	0	.	1082
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48428812	48428812	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GDF10	NM_004962	exon2	c.C1074T	p.D358D	.	.	160	49	122	0	.	650
GET4	51608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	930603	930603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GET4	NM_015949	exon5	c.T505G	p.S169A	.	.	186	56	148	0	.	90
GGN	199720	hgsc.bcm.edu	37	19	38876427	38876427	+	Missense_Mutation	SNP	T	T	G	rs202033519		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GGN	NM_152657	exon3	c.A1475C	p.Q492P	.	.	28	8	11	0	.	90
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380859	147380859	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GJA8	NM_005267	exon2	c.C777T	p.S259S	.	.	110	39	72	0	.	138
GLRX2	51022	broad.mit.edu	37	1	193070320	193070320	+	Missense_Mutation	SNP	G	G	T	rs182259915	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GLRX2	NM_016066	exon2	c.C137A	p.T46K	.	.	114	5	82	0	G|0.999;A|0.001	186
GLYCTK	132158	ucsc.edu	37	3	52324425	52324425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GLYCTK	NM_001144951	exon2	c.G67T	p.G23C	.	.	30	4	20	0	.	90
GPR101	83550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	136113472	136113472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GPR101	NM_054021	exon1	c.C362A	p.T121N	.	.	73	36	39	0	.	134
GPR141	353345	broad.mit.edu	37	7	37780097	37780097	+	Silent	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GPR141	NM_181791	exon1	c.T102G	p.G34G	.	.	139	21	87	4	.	93
GPR62	118442	hgsc.bcm.edu	37	3	51990119	51990119	+	Missense_Mutation	SNP	A	A	C	rs28587738		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GPR62	NM_080865	exon1	c.A451C	p.T151P	.	.	5	5	0	0	A|0.003;C|0.997	91
GPR89A	653519	broad.mit.edu	37	1	145811997	145811997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GPR89A	NM_001097612	exon4	c.G212T	p.R71L	.	.	282	5	180	0	.	90
HCRTR2	3062	broad.mit.edu	37	6	55120092	55120092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HCRTR2	NM_001526	exon3	c.G561T	p.Q187H	.	.	111	4	91	0	.	525
HECW2	57520	bcgsc.ca	37	2	197122584	197122584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HECW2	NM_020760	exon18	c.C3382A	p.R1128S	.	.	88	5	59	0	.	668
HOXA4	3201	hgsc.bcm.edu	37	7	27169934	27169934	+	Missense_Mutation	SNP	A	A	G	rs10251056		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HOXA4	NM_002141	exon1	c.T419C	p.L140P	.	.	7	7	0	0	A|0.081;G|0.919	153
HSPG2	3339	mdanderson.org	37	1	22202155	22202155	+	Missense_Mutation	SNP	C	C	G	rs78889849	byfrequency;alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HSPG2	NM_005529	exon25	c.G3269C	p.R1090P	.	.	12	5	10	0	C|0.995;T|0.005	141
HTR1E	3354	broad.mit.edu	37	6	87725556	87725556	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HTR1E	NM_000865	exon2	c.T504C	p.P168P	.	.	99	3	78	1	.	93
HTT	3064	broad.mit.edu	37	4	3101035	3101035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HTT	NM_002111	exon3	c.G382T	p.A128S	.	.	59	3	48	1	.	281
HUWE1	10075	broad.mit.edu	37	X	53578097	53578097	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HUWE1	NM_031407	exon65	c.C9150A	p.A3050A	.	.	79	5	72	0	.	280
HUWE1	10075	broad.mit.edu;bcgsc.ca	37	X	53577955	53577955	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HUWE1	NM_031407	exon65	c.C9292A	p.R3098R	.	.	131	6	136	0	.	280
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65622666	65622666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IGDCC3	NM_004884	exon11	c.G1823A	p.R608H	.	.	107	40	97	0	.	93
IL27	246778	broad.mit.edu	37	16	28511197	28511197	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IL27	NM_145659	exon5	c.A507G	p.E169E	.	.	60	3	46	0	.	90
IL9	3578	broad.mit.edu;bcgsc.ca	37	5	135231128	135231128	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IL9	NM_000590	exon4	c.183+1G>C	.	.	.	303	8	262	0	.	90
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41388013	41388013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	INO80	NM_017553	exon3	c.G257T	p.G86V	.	.	101	33	93	0	.	72
IRAK3	11213	broad.mit.edu	37	12	66638267	66638267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IRAK3	NM_007199	exon9	c.G889T	p.A297S	.	.	130	5	107	0	.	1379
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599546	3599546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IRX1	NM_024337	exon2	c.A484G	p.M162V	.	.	117	43	123	0	.	228
ITPR1	3708	broad.mit.edu;bcgsc.ca	37	3	4681100	4681100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ITPR1	NM_001099952	exon6	c.G312T	p.E104D	.	.	135	8	108	0	.	710
KAT6A	7994	broad.mit.edu	37	8	41906054	41906054	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001099412	exon3	c.C442A	p.R148R	.	.	145	5	194	0	.	.
KCNN4	3783	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	44278585	44278585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	KCNN4	NM_002250	exon3	c.G442C	p.G148R	.	.	47	18	62	0	.	92
KDR	3791	broad.mit.edu	37	4	55961022	55961022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	KDR,NS,carcinoma,-1	KDR	NM_002253	exon21	c.C2918A	p.A973D	.	.	159	5	143	0	.	2298
KIAA2022	340533	broad.mit.edu	37	X	73959957	73959957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	KIAA2022	NM_001008537	exon3	c.A4435G	p.T1479A	.	.	81	3	101	0	.	183
KLHL29	114818	broad.mit.edu	37	2	23865499	23865499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	KLHL29	NM_052920	exon5	c.G719T	p.G240V	.	.	77	4	46	0	.	70
KRTAP13-2	337959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31744148	31744148	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	KRTAP13-2	NM_181621	exon1	c.A384G	p.R128R	.	.	91	31	86	0	.	90
KRTAP4-11	653240	broad.mit.edu	37	17	39274415	39274415	+	Silent	SNP	C	C	T	rs425487		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_033059	exon1	c.G153A	p.R51R	.	.	51	4	43	1	.	.
LAMA5	3911	broad.mit.edu	37	20	60910135	60910135	+	Nonsense_Mutation	SNP	G	G	T	rs202180524	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LAMA5	NM_005560	exon20	c.C2424A	p.C808X	.	.	185	4	106	0	G|0.999;A|0.000	93
LMNB2	84823	ucsc.edu;bcgsc.ca	37	19	2431870	2431870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LMNB2	NM_032737	exon10	c.A1621G	p.S541G	.	.	44	4	32	0	.	290
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	96350727	96350727	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LNPEP	NM_005575	exon13	c.C2304T	p.A768A	.	.	152	13	114	0	.	229
LOC440925	0	ucsc.edu	37	2	171570035	171570035	+	RNA	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LOC440925	.	.	.	.	.	.	60	16	42	0	.	67
LPHN3	23284	broad.mit.edu	37	4	62845405	62845405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LPHN3	NM_015236	exon15	c.G2726T	p.R909L	.	.	170	5	153	0	.	508
LRP1B	53353	broad.mit.edu	37	2	141812733	141812733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LRP1B	NM_018557	exon10	c.C1504A	p.R502S	.	.	150	4	124	1	.	311
LRP8	7804	hgsc.bcm.edu	37	1	53742506	53742506	+	Silent	SNP	A	A	G	rs56300220		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LRP8	NM_004631	exon5	c.T741C	p.R247R	.	.	4	4	0	0	A|0.586;G|0.414	90
LRRC71	149499	broad.mit.edu	37	1	156897772	156897772	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LRRC71	NM_144702	exon9	c.A972G	p.K324K	.	.	126	3	79	0	.	91
MAP4K3	8491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39481600	39481600	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MAP4K3	NM_003618	exon32	c.A2532T	p.R844S	.	.	88	33	90	0	.	550
MAPK11	5600	mdanderson.org	37	22	50708639	50708639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MAPK11	NM_002751	exon1	c.G83A	p.R28H	.	.	17	4	9	0	.	1402
MC3R	4159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	54824818	54824818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	MC3R,NS,carcinoma,0	MC3R	NM_019888	exon1	c.C919T	p.R307C	.	.	203	53	131	0	.	660
MEGF8	1954	broad.mit.edu	37	19	42862946	42862946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MEGF8	NM_001271938	exon30	c.G5183T	p.R1728L	.	.	100	5	110	0	.	23
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	42028493	42028493	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MGA	NM_001080541	exon13	c.G4031A	p.W1344X	.	.	96	33	83	0	.	522
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4789860	4789860	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MINK1	NM_170663	exon10	c.G888A	p.R296R	.	.	65	20	55	0	.	943
MRPS16	51021	ucsc.edu	37	10	75008797	75008797	+	RNA	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MRPS16	.	.	.	.	.	.	161	1	138	0	.	90
MRPS31	10240	ucsc.edu	37	13	41331105	41331105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MRPS31	NM_005830	exon4	c.C644A	p.T215K	.	.	39	4	70	0	.	226
MUC16	94025	broad.mit.edu	37	19	9083185	9083185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MUC16	NM_024690	exon1	c.C8630A	p.T2877N	.	.	203	7	158	0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9074914	9074914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MUC16	NM_024690	exon3	c.T12532C	p.S4178P	.	.	181	64	128	0	.	566
MUC2	4583	bcgsc.ca	37	11	1092954	1092954	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MUC2	NM_002457	exon30	c.G4773A	p.T1591T	.	.	105	9	99	3	.	90
MUC4	4585	broad.mit.edu	37	3	195511643	195511643	+	Missense_Mutation	SNP	C	C	T	rs200040077		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MUC4	NM_018406	exon2	c.G6808A	p.A2270T	.	.	126	7	88	1	C|0.998;T|0.002	90
MXRA5	25878	broad.mit.edu	37	X	3228432	3228432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MXRA5	NM_015419	exon7	c.C7812A	p.S2604R	.	.	234	5	214	0	.	136
MYOZ3	91977	broad.mit.edu	37	5	150052001	150052001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MYOZ3	NM_001122853	exon6	c.G524T	p.R175L	.	.	303	5	231	0	.	91
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926429	1926429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MYT1L	NM_015025	exon10	c.C1112T	p.T371M	.	.	98	35	84	0	.	95
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115773896	115773896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	NDST4	NM_022569	exon8	c.G1801C	p.G601R	.	.	133	40	132	0	.	94
NEK10	152110	broad.mit.edu	37	3	27329234	27329234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	NEK10	NM_199347	exon21	c.C1744A	p.L582I	.	.	328	6	288	0	.	695
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56369797	56369797	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	NLRP4	NM_134444	exon3	c.C1038T	p.I346I	.	.	74	32	49	0	.	216
OR11H12	440153	broad.mit.edu	37	14	19377996	19377996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	OR11H12	NM_001013354	exon1	c.T403A	p.F135I	.	.	610	20	553	1	.	24
OR14A16	284532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247978151	247978151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	OR14A16	NM_001001966	exon1	c.T881C	p.I294T	.	.	150	31	139	0	.	46
OR1S2	219958	broad.mit.edu	37	11	57970676	57970676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	OR1S2	NM_001004459	exon1	c.A978G	p.X326W	.	.	77	3	81	1	.	69
OXSR1	9943	broad.mit.edu	37	3	38292941	38292941	+	Missense_Mutation	SNP	G	G	T	rs145431865	byfrequency;alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	OXSR1	NM_005109	exon16	c.G1423T	p.D475Y	.	.	135	5	119	0	G|0.999;A|0.001	311
PAM	5066	broad.mit.edu	37	5	102355532	102355532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PAM	NM_138822	exon22	c.G2470T	p.V824F	.	.	184	5	170	2	.	68
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140255085	140255085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_018903	exon1	c.G28C	p.G10R	.	.	92	33	49	0	.	.
PHAX	51808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125944167	125944167	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PHAX	NM_032177	exon3	c.C822A	p.L274L	.	.	79	20	56	0	.	90
PIGB	9488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	55647553	55647553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PIGB	NM_004855	exon12	c.G1588A	p.E530K	.	.	181	13	147	0	.	226
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	204394000	204394000	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PIK3C2B	NM_002646	exon34	c.C4885T	p.R1629X	.	.	117	50	106	0	.	1310
PIK3R6	146850	broad.mit.edu	37	17	8725949	8725949	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	.	.	.	.	.	.	67	3	50	0	.	.
PKDREJ	10343	hgsc.bcm.edu	37	22	46657638	46657638	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PKDREJ	NM_006071	exon1	c.C1582A	p.R528R	.	.	96	4	93	0	.	156
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48602999	48602999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLA2G4C	NM_001159322	exon5	c.G406C	p.A136P	.	.	96	27	92	0	.	92
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160840493	160840493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLA2R1	NM_001195641	exon13	c.C2129A	p.A710D	.	.	205	69	195	0	.	93
PLCE1	51196	broad.mit.edu	37	10	96005825	96005825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLCE1	NM_016341	exon8	c.G2543T	p.W848L	.	.	155	5	120	1	.	229
PLD5	200150	broad.mit.edu	37	1	242383373	242383373	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLD5	NM_152666	exon6	c.C652A	p.R218R	.	.	144	5	125	0	.	96
PLXND1	23129	ucsc.edu	37	3	129290559	129290559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLXND1	NM_015103	exon16	c.C3206T	p.P1069L	.	.	148	2	141	0	.	90
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	128428642	128428642	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001159542	exon1	c.G531A	p.K177K	.	.	71	21	60	0	.	.
PRKG1	5592	broad.mit.edu;bcgsc.ca	37	10	52751168	52751168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRKG1	NM_001098512	exon1	c.G30C	p.K10N	.	.	237	10	180	1	.	523
PRKG2	5593	broad.mit.edu	37	4	82088356	82088356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRKG2	NM_006259	exon5	c.C871A	p.P291T	.	.	572	10	493	1	.	524
PRODH	5625	broad.mit.edu	37	22	18905965	18905965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRODH	NM_016335	exon12	c.C1291A	p.R431S	.	.	83	5	88	0	.	289
PRPF4	9128	broad.mit.edu;bcgsc.ca	37	9	116045492	116045492	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRPF4	NM_004697	exon5	c.563+1G>T	.	.	.	131	7	141	0	.	93
PRR12	57479	mdanderson.org	37	19	50100115	50100115	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRR12	NM_020719	exon4	c.G2523T	p.P841P	.	.	11	3	19	0	.	70
PRRT1	80863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32117487	32117487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRRT1	NM_030651	exon3	c.G571A	p.G191R	.	.	33	12	28	0	.	153
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87701601	87701601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PTPN13	NM_080685	exon36	c.G5953A	p.A1985T	.	.	84	34	74	0	.	230
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71003577	71003577	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PTPRB	NM_001206972	exon1	c.C18T	p.A6A	.	.	93	27	74	0	.	226
RAG1	5896	broad.mit.edu	37	11	36595920	36595920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RAG1	NM_000448	exon2	c.G1066T	p.V356L	.	.	89	4	65	1	.	230
RANBP3L	202151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36253830	36253830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RANBP3L	NM_001161429	exon13	c.G1161T	p.K387N	.	.	137	37	109	0	.	91
RBM10	8241	broad.mit.edu	37	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RBM10	NM_001204468	exon4	c.G552T	p.E184D	.	.	109	7	60	1	.	626
RBM23	55147	bcgsc.ca	37	14	23378798	23378798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RBM23	NM_001077352	exon3	c.C73A	p.Q25K	.	.	77	5	66	0	.	91
RFC5	5985	bcgsc.ca	37	12	118457484	118457484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RFC5	NM_007370	exon3	c.G178T	p.G60C	.	.	102	6	88	0	.	227
RGPD2	729857	broad.mit.edu	37	2	88125234	88125234	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001078170	exon1	c.A15G	p.K5K	.	.	92	4	61	0	.	.
RIN1	9610	broad.mit.edu	37	11	66103084	66103084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RIN1	NM_004292	exon4	c.C452A	p.T151N	.	.	77	5	73	0	.	710
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68897225	68897225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RPE65	NM_000329	exon11	c.C1172T	p.A391V	.	.	89	29	80	0	.	91
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113303242	113303242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RPH3A	NM_001143854	exon6	c.A254T	p.N85I	.	.	88	18	90	0	.	519
RPTN	126638	broad.mit.edu	37	1	152128065	152128065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RPTN	NM_001122965	exon3	c.G1510A	p.G504R	.	.	160	6	147	1	.	68
RRN3P2	653390	broad.mit.edu	37	16	29110438	29110438	+	RNA	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	.	.	.	.	.	.	516	7	438	1	.	.
RUNX2	860	broad.mit.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RUNX2	NM_001024630	exon3	c.C211G	p.Q71E	.	.	51	3	18	0	.	417
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12610490	12610490	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SCIN	NM_001112706	exon1	c.G78A	p.K26K	.	.	69	15	87	0	.	24
SCN10A	6336	broad.mit.edu	37	3	38763842	38763842	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SCN10A	NM_006514	exon19	c.C3414A	p.G1138G	.	.	79	4	71	1	.	99
SEMA7A	8482	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74703983	74703983	+	Silent	SNP	G	G	A	rs150179930	byfrequency	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SEMA7A	NM_003612	exon12	c.C1491T	p.G497G	.	.	72	21	28	0	G|0.994;A|0.006	153
SLC12A1	6557	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48500235	48500235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC12A1	NM_001184832	exon2	c.G319A	p.D107N	.	.	99	37	91	1	.	24
SLC16A3	9123	hgsc.bcm.edu	37	17	80195333	80195333	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC16A3	NM_001206950	exon4	c.G687T	p.V229V	.	.	83	5	32	0	.	227
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128364118	128364118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC27A6	NM_001017372	exon8	c.A1535T	p.Y512F	.	.	70	17	67	0	.	90
SLC29A1	2030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44197695	44197695	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC29A1	NM_004955	exon5	c.G366T	p.V122V	.	.	68	23	57	0	.	154
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24920370	24920370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC5A11	NM_052944	exon14	c.A1603C	p.T535P	.	.	109	10	102	0	.	92
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454719	84454719	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLITRK1	NM_052910	exon1	c.T924A	p.G308G	.	.	83	42	125	0	.	94
SLITRK4	139065	broad.mit.edu	37	X	142717874	142717874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLITRK4	NM_001184750	exon2	c.C1051A	p.H351N	.	.	168	5	144	1	.	193
SLTM	79811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59192012	59192012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLTM	NM_024755	exon7	c.T714C	p.A238A	.	.	124	43	106	0	.	91
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	8784213	8784213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_015210	exon6	c.G1103A	p.R368H	.	.	58	14	34	0	.	.
SON	6651	broad.mit.edu	37	21	34924025	34924025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SON	NM_032195	exon3	c.T2488A	p.S830T	.	.	144	7	113	1	.	97
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21521737	21521737	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SP4	NM_003112	exon5	c.T2103C	p.H701H	.	.	156	53	135	0	.	95
SPATA31A6	389730	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	43625397	43625397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001145196	exon4	c.G3290A	p.R1097K	.	.	251	70	216	1	.	.
SPCS2	9789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74660392	74660392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SPCS2	NM_014752	exon1	c.G62A	p.G21D	.	.	66	25	43	0	.	113
SPTBN5	51332	broad.mit.edu	37	15	42148652	42148652	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SPTBN5	NM_016642	exon53	c.C8848A	p.R2950R	.	.	119	4	80	0	.	91
SSPO	23145	broad.mit.edu	37	7	149475924	149475924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_198455	exon7	c.T890G	p.V297G	.	.	82	16	74	15	.	.
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53084937	53084937	+	Missense_Mutation	SNP	C	C	A	rs147121734	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ST18	NM_014682	exon10	c.G484T	p.D162Y	.	.	150	42	117	0	C|0.999;T|0.000	95
STXBP5	134957	ucsc.edu	37	6	147631246	147631246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	STXBP5	NM_139244	exon10	c.G944T	p.G315V	.	.	39	4	65	1	.	90
SVEP1	79987	broad.mit.edu	37	9	113170558	113170558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SVEP1	NM_153366	exon38	c.C7322A	p.P2441H	.	.	101	4	71	0	.	75
SZRD1	26099	broad.mit.edu	37	1	16719824	16719824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001114600	exon3	c.G203T	p.S68I	.	.	132	6	117	0	.	.
TBC1D2B	23102	hgsc.bcm.edu	37	15	78369972	78369972	+	Missense_Mutation	SNP	G	G	C	rs7176425		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TBC1D2B	NM_144572	exon1	c.C23G	p.A8G	.	.	15	11	0	0	G|0.519;C|0.481	136
TBXAS1	6916	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139653169	139653169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TBXAS1	NM_001166253	exon7	c.G594T	p.M198I	.	.	52	5	47	0	.	155
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115985937	115985937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TDRD1	NM_198795	exon22	c.T3137C	p.L1046P	.	.	100	38	87	0	.	90
TDRD6	221400	bcgsc.ca	37	6	46661577	46661577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TDRD6	NM_001168359	exon1	c.G5712T	p.Q1904H	.	.	160	7	141	0	.	138
TH	7054	broad.mit.edu	37	11	2185501	2185501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TH	NM_199292	exon14	c.C1549A	p.L517M	.	.	64	4	48	0	.	90
TKTL1	8277	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153556013	153556013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TKTL1	NM_012253	exon11	c.C1478T	p.A493V	.	.	214	62	205	1	.	134
TM9SF3	56889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98325145	98325145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TM9SF3	NM_020123	exon3	c.G337T	p.D113Y	.	.	90	26	61	0	.	90
TNRC6A	27327	broad.mit.edu	37	16	24802005	24802005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TNRC6A	NM_014494	exon6	c.G2042T	p.R681L	.	.	90	5	101	0	.	92
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10971325	10971325	+	Missense_Mutation	SNP	G	G	T	rs139096194	byfrequency;alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TPTE	NM_199259	exon5	c.C32A	p.A11E	.	.	101	21	51	0	G|1.000;A|0.000	344
TRIL	9865	broad.mit.edu;mdanderson.org	37	7	28995704	28995704	+	RNA	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	.	.	.	.	.	.	15	4	11	0	.	.
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210696272	210696272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	UNC80	NM_032504	exon16	c.G2732T	p.R911L	.	.	209	67	181	0	.	90
USP1	7398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62916161	62916161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	USP1	NM_001017415	exon9	c.A1867C	p.K623Q	.	.	113	38	114	0	.	659
USP19	10869	bcgsc.ca	37	3	49155125	49155125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	USP19	NM_001199160	exon4	c.C437A	p.A146D	.	.	88	6	104	0	.	663
UTP20	27340	broad.mit.edu	37	12	101748612	101748612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	UTP20	NM_014503	exon41	c.G5110T	p.A1704S	.	.	136	5	93	0	.	155
UTRN	7402	broad.mit.edu	37	6	145095501	145095501	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	UTRN	NM_007124	exon59	c.8632+1G>T	.	.	.	122	10	131	6	.	95
XPO7	23039	ucsc.edu	37	8	21840321	21840321	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	XPO7	NM_015024	exon11	c.G1275T	p.L425L	.	.	35	4	38	0	.	273
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138761070	138761070	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZC3HAV1	NM_024625	exon6	c.G1659A	p.E553E	.	.	95	34	90	0	.	91
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131515868	131515868	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZER1	NM_006336	exon4	c.G321A	p.E107E	.	.	36	10	40	0	.	91
ZFP82	284406	broad.mit.edu	37	19	36884596	36884596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZFP82	NM_133466	exon5	c.C646A	p.H216N	.	.	125	5	104	0	.	91
ZFYVE27	118813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	99498236	99498236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZFYVE27	NM_001002261	exon1	c.T2C	p.M1T	.	.	42	18	43	0	.	91
ZNF350	59348	broad.mit.edu	37	19	52468880	52468880	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZNF350	NM_021632	exon5	c.C826A	p.R276R	.	.	140	4	114	0	.	227
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189778	38189778	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZNF607	NM_032689	exon5	c.G1254A	p.E418E	.	.	70	26	67	0	.	90
ZNF814	730051	bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	239	86	128	2	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	277	116	139	1	.	.
