Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AARS2	57505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	44279864	44279864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AARS2	NM_020745	exon2	c.A380T	p.H127L	.	.	208	11	165	0	.	91
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41911430	41911430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ACO2	NM_001098	exon5	c.A575T	p.D192V	.	.	158	16	133	0	.	290
ADAM15	8751	hgsc.bcm.edu;broad.mit.edu	37	1	155030505	155030505	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ADAM15	NM_001261464	exon14	c.A1625T	p.Q542L	.	.	69	5	80	0	.	651
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	33648938	33648938	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ADAMTS12	NM_030955	exon9	c.C1468T	p.Q490X	.	.	219	80	179	0	.	232
AEBP1	165	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44149920	44149920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AEBP1	NM_001129	exon11	c.A1375C	p.T459P	.	.	331	117	357	7	.	90
AGBL4	84871	broad.mit.edu;bcgsc.ca	37	1	50163085	50163085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AGBL4	NM_032785	exon3	c.T182A	p.V61D	.	.	327	13	236	0	.	137
AK8	158067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	135739158	135739158	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AK8	NM_152572	exon4	c.G227A	p.W76X	.	.	127	17	136	0	.	90
AKR7L	246181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19596175	19596175	+	RNA	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AKR7L	NR_040288	exon5	c.508-2A>T	.	.	.	198	25	235	1	.	90
ALDH16A1	126133	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49972222	49972222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALDH16A1	NM_153329	exon16	c.G2226T	p.M742I	.	.	106	31	126	1	.	91
ALG9	79796	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111680436	111680436	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALG9	NM_024740	exon15	c.A1664T	p.E555V	.	.	134	11	117	1	.	91
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29416521	29416521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALK	NM_004304	exon29	c.A4432G	p.M1478V	.	.	231	74	261	0	.	3833
ALKBH2	121642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109526088	109526088	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALKBH2	NM_001001655	exon4	c.A709C	p.S237R	.	.	63	23	67	0	.	227
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113353386	113353386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALPK1	NM_001102406	exon11	c.A2683G	p.N895D	.	.	145	75	224	0	.	337
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85401062	85401062	+	Silent	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ALPK3	NM_020778	exon6	c.G3699T	p.L1233L	.	.	24	7	32	0	.	337
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2740227	2740227	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AMZ1	NM_133463	exon2	c.T142A	p.Y48N	.	.	45	5	92	0	.	90
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56636966	56636966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ANKRD52	NM_173595	exon28	c.G3191T	p.R1064L	.	.	18	5	24	0	.	70
ANXA7	310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75147463	75147463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ANXA7	NM_004034	exon8	c.A683T	p.K228M	.	.	255	31	213	0	.	516
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	51285722	51285722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AP4E1	NM_007347	exon17	c.A2246T	p.D749V	.	.	95	8	76	0	.	90
ARHGEF2	9181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155931649	155931649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ARHGEF2	NM_001162383	exon11	c.A1271T	p.E424V	.	.	312	35	231	0	.	228
ASB10	136371	broad.mit.edu	37	7	150884731	150884731	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ASB10	NM_080871	exon1	c.T79A	p.W27R	.	.	74	4	83	0	.	226
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197108988	197108988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ASPM	NM_001206846	exon4	c.C1935A	p.F645L	.	.	44	17	47	0	.	615
ATP10B	23120	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	160061560	160061560	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ATP10B	NM_025153	exon12	c.A1182T	p.Q394H	.	.	270	26	239	1	.	72
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	54961584	54961584	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	AURKA	NM_198437	exon3	c.A48T	p.T16T	.	.	126	7	99	0	.	1601
B3GNT4	79369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122691677	122691677	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	B3GNT4	NM_030765	exon3	c.T879A	p.A293A	.	.	95	11	142	0	.	91
BAI2	576	broad.mit.edu;bcgsc.ca	37	1	32204962	32204962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BAI2	NM_001703	exon15	c.T2442A	p.F814L	.	.	338	11	314	0	.	526
BCAS3	54828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59155891	59155891	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BCAS3	NM_001099432	exon22	c.2372+1G>A	.	.	.	154	44	138	0	.	495
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65920668	65920668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BPTF	NM_004459	exon17	c.A6092G	p.E2031G	.	.	293	105	261	0	.	94
BRPF1	7862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9776024	9776024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BRPF1	NM_001003694	exon2	c.A200C	p.Q67P	.	.	169	42	187	1	.	92
BRSK1	84446	bcgsc.ca	37	19	55813008	55813008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BRSK1	NM_032430	exon8	c.G807T	p.E269D	.	.	59	4	56	0	.	759
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	93714872	93714872	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BTBD7	NM_001002860	exon9	c.C2071T	p.R691X	.	.	89	25	93	0	.	91
BTN2A2	10385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26392974	26392974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	BTN2A2	NM_006995	exon8	c.G1351T	p.D451Y	.	.	408	134	397	1	.	90
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113461976	113461976	+	Splice_Site	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	C4orf21	NM_018392	exon27	c.5910+1G>T	.	.	.	94	48	146	0	.	90
C4orf21	55345	ucsc.edu;bcgsc.ca	37	4	113462074	113462074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	C4orf21	NM_018392	exon26	c.C5813T	p.A1938V	.	.	114	62	185	3	.	90
CA6	765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	9027785	9027785	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CA6	NM_001215	exon6	c.C639A	p.Y213X	.	.	902	250	632	1	.	516
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48668930	48668930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CACNA1G	NM_001256360	exon11	c.A2588G	p.D863G	.	.	99	32	128	0	.	67
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	62518735	62518735	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CADPS	NM_183394	exon14	c.2104-2A>T	.	.	.	90	7	71	0	.	281
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12856693	12856693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CAND2	NM_001162499	exon8	c.G1060T	p.A354S	.	.	194	76	260	0	.	72
CASC5	57082	hgsc.bcm.edu;broad.mit.edu	37	15	40917526	40917526	+	Silent	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CASC5	NM_170589	exon11	c.G5142T	p.P1714P	.	.	82	5	66	0	.	660
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219897276	219897276	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CCDC108	NM_194302	exon6	c.C561T	p.F187F	.	.	200	55	252	0	.	94
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6291552	6291552	+	Missense_Mutation	SNP	G	G	A	rs200729292		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CCKBR	NM_176875	exon3	c.G638A	p.R213Q	.	.	97	48	113	0	.	574
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38711882	38711882	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CCR7	NM_001838	exon3	c.T249C	p.Y83Y	.	.	173	23	150	0	.	659
CD164	8763	broad.mit.edu;bcgsc.ca	37	6	109690222	109690222	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CD164	NM_006016	exon7	c.428-2A>T	.	.	.	167	14	226	1	.	90
CD38	952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15841652	15841652	+	Silent	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CD38	NM_001775	exon6	c.T663G	p.T221T	.	.	106	13	96	0	.	92
CD6	923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60777231	60777231	+	Silent	SNP	C	C	G	rs150066453	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CD6	NM_006725	exon5	c.C969G	p.S323S	.	.	127	39	120	0	C|1.000;T|0.000	227
CEP170	9859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	243354349	243354349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CEP170	NM_001042405	exon8	c.A1079T	p.D360V	.	.	257	16	218	0	.	93
CEP97	79598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101451370	101451370	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CEP97	NM_024548	exon6	c.G600A	p.L200L	.	.	232	34	219	0	.	70
CHDH	55349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53857409	53857409	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CHDH	NM_018397	exon3	c.C627T	p.A209A	.	.	99	11	143	0	.	91
CHMP4A	29082	bcgsc.ca	37	14	24679877	24679877	+	Missense_Mutation	SNP	C	C	T	rs2295322	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CHMP4A	NM_014169	exon4	c.G586A	p.G196R	.	.	152	7	205	2	C|0.594;T|0.406	92
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19656087	19656087	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CILP2	NM_153221	exon8	c.G2733A	p.V911V	.	.	115	26	142	0	.	91
CLCN7	1186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1510832	1510832	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CLCN7	NM_001287	exon5	c.A469T	p.R157W	.	.	156	13	169	0	.	92
COPS3	8533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17179373	17179373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	COPS3	NM_003653	exon2	c.A161T	p.H54L	.	.	126	14	164	0	.	226
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	131418758	131418758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CPNE4	NM_130808	exon4	c.A427T	p.I143F	.	.	133	9	97	0	.	92
CPQ	10404	broad.mit.edu;bcgsc.ca	37	8	97892096	97892106	+	Frame_Shift_Del	DEL	GATGCAGAAAT	GATGCAGAAAT	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	GATGCAGAAAT	GATGCAGAAAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_016134	exon4	c.712_722del	p.238_241del	.	.	332	15	250	0	.	.
CR1	1378	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	207679331	207679331	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CR1	NM_000573	exon2	c.T204A	p.Y68X	.	.	445	33	332	0	.	93
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131860591	131860591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CRAT	NM_000755	exon10	c.C1265T	p.P422L	.	.	179	28	202	0	.	90
CUBN	8029	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	17087018	17087018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CUBN	NM_001081	exon25	c.A3660T	p.L1220F	.	.	188	11	163	1	.	166
CYP24A1	1591	broad.mit.edu	37	20	52789494	52789494	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	CYP24A1	NM_000782	exon2	c.A403T	p.K135X	.	.	125	6	147	1	.	228
DCAF4L2	138009	broad.mit.edu	37	8	88885313	88885313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DCAF4L2	NM_152418	exon1	c.T887A	p.L296Q	.	.	415	7	322	0	.	91
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	134117757	134117757	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DDX46	NM_014829	exon8	c.A1026T	p.L342L	.	.	202	13	177	0	.	227
DENND5A	23258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	9182408	9182408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DENND5A	NM_001243254	exon12	c.A2288C	p.K763T	.	.	286	17	224	0	.	91
DISC1	27185	broad.mit.edu;bcgsc.ca	37	1	231829748	231829748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DISC1	NM_001164541	exon2	c.A244G	p.R82G	.	.	206	8	168	0	.	91
DIXDC1	85458	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111864260	111864260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DIXDC1	.	.	.	.	.	.	211	15	190	0	.	91
DLG2	1740	broad.mit.edu	37	11	83673968	83673968	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DLG2	NM_001142699	exon14	c.C1300G	p.P434A	.	.	254	4	226	0	.	96
DNA2	1763	broad.mit.edu;ucsc.edu	37	10	70231585	70231585	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_001080449	exon1	c.A37T	p.K13X	.	.	178	54	238	3	.	.
DNAH1	25981	broad.mit.edu;bcgsc.ca	37	3	52419373	52419373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNAH1	NM_015512	exon54	c.T8535A	p.D2845E	.	.	200	18	187	1	.	67
DNAJC5	80331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62562355	62562355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNAJC5	NM_025219	exon4	c.A473T	p.Q158L	.	.	143	10	155	0	.	227
DNER	92737	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	230377533	230377533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNER	NM_139072	exon6	c.A1113T	p.Q371H	.	.	265	15	282	1	.	524
DNM2	1785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10906053	10906053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNM2	NM_001005361	exon9	c.G1134C	p.E378D	.	.	131	42	110	0	.	471
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10251564	10251564	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DNMT1	NM_001130823	exon32	c.A3416C	p.Q1139P	.	.	65	27	60	0	.	660
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30917142	30917142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DPCR1	NM_080870	exon2	c.C901T	p.P301S	.	.	207	71	170	0	.	90
DPM1	8813	broad.mit.edu	37	20	49575060	49575060	+	Missense_Mutation	SNP	T	T	A	rs139624629	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DPM1	NM_003859	exon1	c.A1T	p.M1L	.	.	134	5	87	0	T|0.999;G|0.000	91
DPYSL3	1809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	146792244	146792244	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	DPYSL3	NM_001197294	exon6	c.A890T	p.E297V	.	.	112	10	114	0	.	91
EIF3A	8661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120801729	120801729	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	EIF3A	NM_003750	exon19	c.A3303T	p.R1101R	.	.	158	22	185	5	.	226
EIF3D	8664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36919311	36919311	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	EIF3D	NM_003753	exon6	c.A410T	p.Q137L	.	.	115	9	102	0	.	69
ELFN1	392617	bcgsc.ca;mdanderson.org	37	7	1784840	1784840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_001128636	exon2	c.G608A	p.R203H	.	.	18	3	66	0	.	.
EPHB2	2048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23222044	23222044	+	Silent	SNP	T	T	A	rs141173528	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	EPHB2	NM_017449	exon8	c.T1671A	p.A557A	.	.	113	18	181	0	T|1.000;C|0.000	1381
ERCC4	2072	broad.mit.edu;bcgsc.ca	37	16	14024661	14024661	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ERCC4	NM_005236	exon5	c.A887T	p.Q296L	.	.	186	7	120	0	.	665
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169521814	169521814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	F5	NM_000130	exon8	c.A1277T	p.Q426L	.	.	185	14	124	0	.	157
F8	2157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	154158501	154158501	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	F8	NM_000132	exon14	c.A3564T	p.P1188P	.	.	134	7	68	0	.	182
FAM194A	131831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	150398678	150398678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FAM194A	NM_152394	exon8	c.A922T	p.I308F	.	.	91	5	94	0	.	93
FAU	2197	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64888161	64888161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FAU	NM_001997	exon5	c.A394T	p.N132Y	.	.	137	7	118	0	.	90
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16578144	16578145	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FBXO42	NM_018994	exon10	c.1174_1175del	p.392_392del	.	.	243	29	204	0	.	228
FIS1	51024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	100884160	100884160	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FIS1	NM_016068	exon3	c.A206T	p.E69V	.	.	462	31	350	0	.	44
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216261912	216261912	+	Silent	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FN1	NM_212476	exon23	c.A3552G	p.A1184A	.	.	72	15	82	0	.	584
FOXS1	2307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30432787	30432787	+	Missense_Mutation	SNP	G	G	A	rs149428291	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FOXS1	NM_004118	exon1	c.C559T	p.R187W	.	.	48	13	73	0	G|0.999;A|0.001	69
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FRG1B	.	.	.	.	.	.	1016	49	1095	30	.	22
FRRS1	391059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100174554	100174554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	FRRS1	NM_001013660	exon17	c.A1781T	p.Q594L	.	.	120	48	77	0	.	91
GAD2	2572	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26581901	26581901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GAD2	NM_000818	exon15	c.G1565A	p.R522K	.	.	107	57	109	0	.	515
GCOM1	145781	broad.mit.edu	37	15	57917993	57917993	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GCOM1	NM_001018090	exon5	c.A428T	p.Q143L	.	.	171	6	136	0	.	91
GET4	51608	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	925744	925744	+	Silent	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GET4	NM_015949	exon2	c.A207C	p.G69G	.	.	120	28	155	3	.	90
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131287658	131287658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GLE1	NM_001499	exon7	c.A1085G	p.E362G	.	.	82	28	102	0	.	22
GORAB	92344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170521319	170521319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GORAB	NM_152281	exon5	c.G901T	p.V301L	.	.	197	19	175	1	.	90
GPAT2	150763	broad.mit.edu	37	2	96688872	96688872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GPAT2	NM_207328	exon19	c.G2131T	p.G711C	.	.	204	40	348	0	.	90
GPR153	387509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6314095	6314095	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GPR153	NM_207370	exon3	c.T469G	p.Y157D	.	.	177	37	207	0	.	514
GPR176	11245	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40094295	40094295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GPR176	NM_007223	exon3	c.T586A	p.W196R	.	.	244	26	207	1	.	519
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102250278	102250278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	GRIK2	NM_021956	exon8	c.G1168A	p.D390N	.	.	112	29	104	0	.	157
HIP1	3092	broad.mit.edu;bcgsc.ca	37	7	75178268	75178268	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HIP1	NM_005338	exon23	c.A2327T	p.Q776L	.	.	282	11	163	2	.	1085
HIST1H4D	8360	broad.mit.edu	37	6	26189223	26189223	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HIST1H4D	NM_003539	exon1	c.C82T	p.Q28X	.	.	106	6	83	0	.	68
HMOX1	3162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	35789564	35789564	+	Silent	SNP	A	A	T	rs140740892	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HMOX1	NM_002133	exon5	c.A840T	p.T280T	.	.	141	8	179	0	A|0.997;G|0.003	91
HNRNPH2	3188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100667970	100667970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HNRNPH2	NM_001032393	exon2	c.G994T	p.D332Y	.	.	265	197	140	0	.	130
HNRPLL	92906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	38804603	38804603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HNRPLL	NM_138394	exon7	c.G874C	p.G292R	.	.	298	86	273	0	.	91
HOMEZ	57594	broad.mit.edu	37	14	23746263	23746263	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HOMEZ	NM_020834	exon2	c.A174T	p.A58A	.	.	241	6	299	0	.	22
HOXA6	3203	broad.mit.edu;ucsc.edu	37	7	27187129	27187129	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HOXA6	NM_024014	exon1	c.T240A	p.Y80X	.	.	167	53	159	1	.	91
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	53672381	53672381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	HUWE1	NM_031407	exon7	c.A386T	p.Q129L	.	.	127	7	53	0	.	280
IGSF9	57549	broad.mit.edu;mdanderson.org	37	1	159913244	159913244	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	IGSF9	NM_001135050	exon2	c.A1T	p.M1L	.	.	567	46	591	6	.	156
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117869879	117869879	+	Silent	SNP	G	G	T	rs199604463	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	IL10RA	NM_001558	exon7	c.G1260T	p.S420S	.	.	126	42	130	0	G|0.999;A|0.000	91
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55259982	55259990	+	In_Frame_Del	DEL	ACAGGATCA	ACAGGATCA	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	ACAGGATCA	ACAGGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	IL6ST	NM_175767	exon6	c.642_650del	p.214_217del	.	.	101	18	121	0	.	290
IRS4	8471	hgsc.bcm.edu	37	X	107977707	107977707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	IRS4	NM_003604	exon1	c.A1868T	p.K623M	.	.	79	4	32	0	.	623
ITFG2	55846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2927434	2927434	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITFG2	NM_018463	exon4	c.A397T	p.S133C	.	.	144	54	142	0	.	90
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	173344405	173344405	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITGA6	NM_000210	exon10	c.A1425T	p.T475T	.	.	85	31	111	0	.	227
ITGA7	3679	broad.mit.edu;bcgsc.ca	37	12	56087893	56087893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITGA7	NM_001144996	exon19	c.A2459T	p.Q820L	.	.	333	13	298	0	.	229
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	124592297	124592297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITGB5	NM_002213	exon2	c.A152T	p.K51I	.	.	269	21	242	0	.	227
ITIH5	80760	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	7627889	7627889	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ITIH5	NM_001001851	exon8	c.C1083A	p.Y361X	.	.	410	79	305	1	.	92
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124048793	124048793	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KALRN	NM_003947	exon8	c.A1364T	p.H455L	.	.	262	79	245	0	.	738
KCNG2	26251	bcgsc.ca	37	18	77659695	77659695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KCNG2	NM_012283	exon2	c.C1280T	p.P427L	.	.	5	4	33	0	.	90
KCNK6	9424	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38817261	38817261	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KCNK6	NM_004823	exon2	c.T351A	p.D117E	.	.	58	4	56	0	.	91
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	197427705	197427705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KIAA0226	NM_014687	exon7	c.A1040T	p.E347V	.	.	178	18	189	0	.	22
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101834387	101834387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KIAA1377	NM_020802	exon6	c.C2621T	p.S874L	.	.	183	55	127	0	.	136
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72349367	72349367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KIF19	NM_153209	exon16	c.G2147T	p.G716V	.	.	192	88	201	0	.	90
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10408722	10408722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KIF1B	NM_015074	exon35	c.A3742T	p.I1248F	.	.	368	115	253	0	.	93
KITLG	4254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	88900157	88900157	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KITLG	NM_000899	exon9	c.715-2A>T	.	.	.	96	10	80	0	.	227
KNSTRN	90417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	40675114	40675114	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_033286	exon1	c.A78T	p.P26P	.	.	122	9	108	0	.	.
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39521676	39521676	+	Missense_Mutation	SNP	G	G	A	rs141441300	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KRT33B	NM_002279	exon4	c.C718T	p.R240C	.	.	279	88	292	0	G|1.000;A|0.000	90
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39135187	39135187	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_182497	exon8	c.G1065A	p.E355E	.	.	152	49	176	0	.	.
KRT86	3892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52699941	52699941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KRT86	NM_002284	exon7	c.T1124A	p.L375Q	.	.	116	6	204	0	.	91
KRTAP17-1	83902	mdanderson.org	37	17	39471803	39471803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KRTAP17-1	NM_031964	exon1	c.T100A	p.S34T	.	.	18	3	44	0	.	68
KRTAP4-3	85290	bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	113	42	111	3	A|0.046;T|0.954	22
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7013887	7013887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LAMA1	NM_005559	exon23	c.C3290A	p.T1097K	.	.	196	88	259	0	.	149
LENG8	114823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54962528	54962528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LENG8	NM_052925	exon2	c.G7A	p.A3T	.	.	188	65	179	0	.	91
LEPR	3953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	66081748	66081748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LEPR	NM_001003680	exon15	c.A2053T	p.T685S	.	.	257	13	161	0	.	91
LGALS8	3964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236708178	236708178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LGALS8	NM_006499	exon11	c.T893C	p.I298T	.	.	136	50	105	0	.	91
LHX6	26468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	124979380	124979380	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LHX6	NM_014368	exon5	c.A649T	p.M217L	.	.	126	8	200	0	.	90
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38490325	38490325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LIFR	NM_002310	exon15	c.T2134A	p.L712I	.	.	148	20	129	0	.	1173
LINGO1	84894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77907675	77907675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LINGO1	NM_032808	exon2	c.A574C	p.S192R	.	.	138	57	133	0	.	24
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75115899	75115899	+	Splice_Site	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LMAN1L	NM_021819	exon12	c.1200-1G>T	.	.	.	51	7	81	0	.	90
LMBR1	64327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156556491	156556491	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LMBR1	NM_022458	exon7	c.424-2A>T	.	.	.	159	7	90	0	.	90
LOC650368	0	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	.	.	.	43	5	29	1	.	.
LPIN1	23175	broad.mit.edu	37	2	11913775	11913775	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LPIN1	NM_001261428	exon6	c.A773T	p.Q258L	.	.	62	5	73	0	.	156
LRFN1	57622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39805513	39805513	+	Missense_Mutation	SNP	G	G	A	rs201576239		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRFN1	NM_020862	exon1	c.C464T	p.A155V	.	.	72	5	87	0	.	70
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	133881819	133881819	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRGUK	NM_144648	exon13	c.A1507T	p.R503X	.	.	186	15	112	0	.	227
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	85449747	85449747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRRIQ1	NM_001079910	exon8	c.A1176T	p.Q392H	.	.	45	5	27	0	.	95
LRRK2	120892	broad.mit.edu;bcgsc.ca	37	12	40626117	40626117	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRRK2	NM_198578	exon3	c.A279T	p.P93P	.	.	192	7	146	0	.	533
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	110763113	110763113	+	Silent	SNP	T	T	A	rs151294396	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	LRRN3	NM_018334	exon2	c.T285A	p.T95T	.	.	64	4	33	0	T|1.000;C|0.000	154
MAEA	10296	hgsc.bcm.edu;broad.mit.edu	37	4	1332275	1332275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MAEA	NM_001017405	exon8	c.A965T	p.N322I	.	.	102	7	112	0	.	91
MAN2A1	4124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109026191	109026191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MAN2A1	NM_002372	exon1	c.A73G	p.M25V	.	.	253	69	158	0	.	92
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	43819173	43819173	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MAP1A	NM_002373	exon4	c.T5502A	p.T1834T	.	.	139	8	145	0	.	141
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102483701	102483701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MAP4K4	NM_001242559	exon19	c.C2150G	p.S717C	.	.	135	35	153	0	.	547
MATK	4145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3779601	3779601	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MATK	NM_002378	exon10	c.A860T	p.E287V	.	.	34	7	55	0	.	521
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113730402	113730402	+	Silent	SNP	G	G	A	rs141497667	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MCF2L	NM_001112732	exon12	c.G1431A	p.A477A	.	.	209	59	200	0	G|0.999;A|0.001	228
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90380710	90380710	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MDN1	NM_014611	exon83	c.T13884C	p.S4628S	.	.	175	50	188	0	.	100
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90381952	90381952	+	Silent	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MDN1	NM_014611	exon82	c.G13761T	p.S4587S	.	.	87	21	77	0	.	100
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42099396	42099396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MEI1	NM_152513	exon2	c.T236A	p.L79Q	.	.	106	7	123	0	.	70
METTL15	196074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	28135039	28135039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	METTL15	NM_152636	exon3	c.A158C	p.Q53P	.	.	152	53	124	0	.	91
MGLL	11343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127441397	127441397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MGLL	NM_007283	exon4	c.A275G	p.Q92R	.	.	329	120	245	0	.	90
MICAL1	64780	broad.mit.edu;bcgsc.ca	37	6	109774931	109774931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MICAL1	NM_001159291	exon3	c.C376T	p.H126Y	.	.	77	6	115	1	.	154
MIR200A	406983	broad.mit.edu;mdanderson.org	37	1	1103273	1103273	+	RNA	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	.	.	.	299	24	252	1	.	.
MIR708	100126333	ucsc.edu;mdanderson.org	37	11	79113136	79113136	+	RNA	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	.	.	.	160	59	135	0	.	.
MIR98	407054	mdanderson.org	37	X	53583188	53583188	+	RNA	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	.	.	.	714	53	335	0	.	.
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151878935	151878935	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MLL3	NM_170606	exon36	c.A6010T	p.S2004C	.	.	248	66	120	0	.	1398
MMP12	4321	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102737122	102737122	+	RNA	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MMP12	.	.	.	.	.	.	189	41	171	0	.	226
MMP17	4326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132334436	132334436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MMP17	NM_016155	exon9	c.G1294A	p.D432N	.	.	188	26	311	1	.	226
MRGPRX3	117195	broad.mit.edu;bcgsc.ca	37	11	18158779	18158779	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MRGPRX3	NM_054031	exon3	c.A30T	p.T10T	.	.	413	14	355	0	.	92
MROH7	374977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55130862	55130862	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_001039464	exon4	c.A1254G	p.S418S	.	.	361	145	256	1	.	.
MRPS25	64432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15093970	15093970	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MRPS25	NM_022497	exon4	c.T500A	p.L167Q	.	.	191	13	156	0	.	90
MS4A2	2206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59857913	59857913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MS4A2	NM_000139	exon3	c.A291T	p.K97N	.	.	50	9	43	0	.	91
MTFR1L	56181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	26158452	26158452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_001099625	exon7	c.A814G	p.I272V	.	.	128	9	145	0	.	.
MTMR11	10903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149904191	149904191	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MTMR11	NM_001145862	exon11	c.A1017T	p.S339S	.	.	162	13	99	0	.	90
MYH7B	57644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33582028	33582028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYH7B	NM_020884	exon27	c.A2650G	p.K884E	.	.	320	116	285	0	.	136
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10317595	10317595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYH8	NM_002472	exon11	c.A922T	p.T308S	.	.	257	26	332	0	.	101
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	26462749	26462749	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYO3A	NM_017433	exon30	c.T3556A	p.Y1186N	.	.	122	11	109	0	.	1007
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	128334177	128334177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYO7B	NM_001080527	exon8	c.A743T	p.E248V	.	.	53	12	52	0	.	47
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	95116494	95116494	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	MYOF	NM_013451	exon30	c.A3232T	p.R1078X	.	.	213	14	218	0	.	93
NACA	4666	hgsc.bcm.edu;bcgsc.ca	37	12	57114439	57114439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NACA	NM_001113203	exon3	c.C875A	p.T292N	.	.	37	4	30	0	.	254
NADK	65220	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1687958	1687958	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NADK	NM_001198994	exon7	c.C918T	p.F306F	.	.	166	66	138	1	.	44
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183799524	183799524	+	Missense_Mutation	SNP	T	T	C	rs144468405	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NCKAP1	NM_205842	exon27	c.A2833G	p.I945V	.	.	113	35	122	0	T|0.999;C|0.001	92
NCKIPSD	51517	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48716129	48716129	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NCKIPSD	NM_016453	exon12	c.A1833T	p.P611P	.	.	283	19	212	1	.	1082
NCL	4691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232326345	232326345	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NCL	NM_005381	exon3	c.A519T	p.A173A	.	.	213	18	277	0	.	230
NCSTN	23385	broad.mit.edu;bcgsc.ca	37	1	160325525	160325525	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NCSTN	NM_015331	exon12	c.A1433T	p.N478I	.	.	293	13	215	1	.	658
ND4	0	broad.mit.edu	37	MT	11940	11940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	ENST00000361381	exon1	c.T1181C	p.L394P	.	.	47	23	14	0	.	.
ND6	0	bcgsc.ca	37	MT	14649	14649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	ENST00000361681	exon1	c.A25G	p.S9G	.	.	140	130	36	0	.	.
NEFH	4744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29885288	29885292	+	Frame_Shift_Del	DEL	AGCAA	AGCAA	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	AGCAA	AGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NEFH	NM_021076	exon4	c.1659_1663del	p.553_555del	.	.	222	66	326	0	.	90
NELL2	4753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44913954	44913954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NELL2	NM_001145107	exon20	c.T2384A	p.I795N	.	.	171	48	125	0	.	517
NIP7	51388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69375171	69375171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NIP7	NM_016101	exon4	c.A371G	p.N124S	.	.	136	73	208	0	.	153
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52489713	52489713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NISCH	NM_001276293	exon1	c.C56T	p.A19V	.	.	12	7	34	0	.	93
NKTR	4820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42674105	42674105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NKTR	NM_005385	exon9	c.A563G	p.K188R	.	.	86	25	70	0	.	93
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	6069270	6069270	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NLGN4X	NM_181332	exon2	c.T238A	p.S80T	.	.	368	26	156	0	.	195
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33466415	33466415	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NOL6	NM_022917	exon17	c.A2100T	p.P700P	.	.	169	72	186	0	.	92
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	44578770	44578770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NPC1L1	NM_001101648	exon2	c.A1226T	p.Q409L	.	.	226	15	193	0	.	94
NR2C1	7181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95452114	95452114	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NR2C1	NM_001032287	exon5	c.A516T	p.R172S	.	.	51	5	41	0	.	187
NTS	4922	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	86276027	86276027	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NTS	NM_006183	exon4	c.T387A	p.T129T	.	.	127	9	107	0	.	90
NXPH1	30010	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	8790840	8790840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	NXPH1	NM_152745	exon3	c.A257T	p.D86V	.	.	165	56	160	2	.	69
OASL	8638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121458369	121458369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OASL	NM_003733	exon6	c.A1540T	p.S514C	.	.	58	8	72	0	.	69
OASL	8638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121458371	121458371	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OASL	NM_003733	exon6	c.C1538G	p.A513G	.	.	58	8	74	0	.	69
OBSCN	84033	bcgsc.ca	37	1	228494696	228494696	+	Silent	SNP	G	G	A	rs4653939	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OBSCN	NM_001271223	exon56	c.G14892A	p.A4964A	.	.	224	7	314	2	G|0.667;A|0.333	403
OIT3	170392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74660156	74660156	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OIT3	NM_152635	exon3	c.A458T	p.E153V	.	.	120	35	113	0	.	70
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	97868315	97868315	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OR5H14	NM_001005514	exon1	c.T86A	p.L29Q	.	.	291	18	256	0	.	91
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517532	158517532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	OR6Y1	NM_001005189	exon1	c.A364T	p.I122F	.	.	414	39	255	0	.	69
PATL1	219988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59420493	59420493	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PATL1	NM_152716	exon11	c.1122-2A>T	.	.	.	117	12	92	0	.	1
PCDHA2	56146	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140176896	140176896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PCDHA2	NM_031495	exon1	c.G2347A	p.A783T	.	.	310	93	257	3	.	94
PCDHGA5	56110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140744766	140744766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PCDHGA5	NM_032054	exon1	c.A869T	p.E290V	.	.	68	9	74	0	.	35
PDSS1	23590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27024491	27024491	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PDSS1	NM_014317	exon10	c.C1009T	p.L337L	.	.	331	85	199	0	.	90
PDZD8	118987	ucsc.edu	37	10	119043040	119043040	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PDZD8	NM_173791	exon5	c.G3204A	p.R1068R	.	.	109	1	113	0	.	90
PFKP	5214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3161001	3161001	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PFKP	NM_002627	exon15	c.G1470A	p.E490E	.	.	285	61	194	2	.	253
PGP	283871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2263817	2263817	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PGP	NM_001042371	exon2	c.A878T	p.Q293L	.	.	273	15	201	0	.	23
PHF2	5253	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	96411461	96411461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PHF2	NM_005392	exon5	c.T569A	p.L190H	.	.	194	15	236	1	.	91
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46531740	46531740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PIK3R3	NM_001114172	exon6	c.A607G	p.T203A	.	.	116	14	75	0	.	1309
PKD2L2	27039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137226191	137226191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PKD2L2	NM_001258448	exon2	c.A53G	p.H18R	.	.	195	61	194	0	.	90
PLCB3	5331	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64023034	64023034	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PLCB3	NM_000932	exon7	c.A543T	p.A181A	.	.	136	7	134	0	.	228
PLEKHG3	26030	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65208056	65208056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PLEKHG3	NM_015549	exon14	c.G1653T	p.E551D	.	.	85	48	118	1	.	91
PNMA5	114824	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	152159795	152159795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PNMA5	NM_001103150	exon2	c.T348A	p.S116R	.	.	258	17	107	1	.	131
PORCN	64840	broad.mit.edu	37	X	48368343	48368343	+	Silent	SNP	C	C	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PORCN	NM_203475	exon1	c.C135G	p.L45L	.	.	191	20	95	6	.	133
POSTN	10631	broad.mit.edu	37	13	38162002	38162002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	POSTN	NM_006475	exon5	c.T563C	p.M188T	.	.	222	6	252	0	.	516
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	23797512	23797512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PPARGC1A	NM_013261	exon13	c.A2330T	p.K777M	.	.	99	5	69	0	.	230
PPIP5K2	23262	broad.mit.edu	37	5	102509643	102509643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PPIP5K2	NM_015216	exon20	c.G2496C	p.L832F	.	.	81	3	46	0	.	92
PPP2R5B	5526	broad.mit.edu;mdanderson.org	37	11	64693301	64693301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PPP2R5B	NM_006244	exon2	c.C95T	p.S32F	.	.	21	7	31	0	.	660
PRDM5	11107	broad.mit.edu	37	4	121738026	121738026	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PRDM5	NM_018699	exon6	c.A704T	p.Q235L	.	.	250	5	250	0	.	91
PRH1	5554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	11036772	11036772	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_006250	exon1	c.A45T	p.S15S	.	.	218	15	214	0	.	.
PRKAR2B	5577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	106781395	106781395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PRKAR2B	NM_002736	exon5	c.A584T	p.D195V	.	.	199	10	146	0	.	1083
PTPRF	5792	mdanderson.org	37	1	44071221	44071221	+	Silent	SNP	G	G	T	rs631248	byfrequency;alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	PTPRF	NM_002840	exon19	c.G3411T	p.V1137V	.	.	780	44	640	3	A|0.648;C|0.002	232
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36154285	36154285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RALGAPA1	NM_194301	exon19	c.A2626G	p.N876D	.	.	80	37	104	0	.	138
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38818572	38818572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RASGRP1	NM_001128602	exon3	c.T254A	p.L85Q	.	.	99	25	85	0	.	697
RBMXL2	27288	bcgsc.ca	37	11	7110363	7110363	+	Silent	SNP	G	G	A	rs4758158	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RBMXL2	NM_014469	exon1	c.G12A	p.A4A	.	.	257	7	296	5	G|0.709;A|0.291	68
RD3	343035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211652560	211652560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RD3	NM_183059	exon3	c.C406A	p.H136N	.	.	44	11	61	0	.	91
RGL2	5863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	33263466	33263466	+	Missense_Mutation	SNP	T	T	A	rs201427428	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RGL2	NM_004761	exon7	c.A839T	p.H280L	.	.	190	13	163	0	T|0.999;C|0.001	662
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72967855	72967855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RIMS1	NM_014989	exon17	c.G2798T	p.S933I	.	.	78	23	78	0	.	144
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72967911	72967911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RIMS1	NM_014989	exon17	c.C2854A	p.R952S	.	.	121	30	122	0	.	144
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56435407	56435407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RNF43	NM_017763	exon9	c.A1730T	p.Q577L	.	.	121	14	125	0	.	92
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	55541215	55541215	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RP1	NM_006269	exon4	c.G4773A	p.W1591X	.	.	63	34	55	0	.	102
RPH3A	22895	broad.mit.edu	37	12	113312977	113312977	+	Splice_Site	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RPH3A	NM_001143854	exon11	c.883+2T>C	.	.	.	37	4	81	0	.	519
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237868576	237868576	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	RYR2	NM_001035	exon67	c.G9513A	p.L3171L	.	.	155	47	133	0	.	158
SAA1	6288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18291314	18291315	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SAA1	NM_199161	exon4	c.281_282insA	p.S94fs	.	.	290	96	257	0	.	650
SAGE1	55511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134983800	134983800	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SAGE1	NM_018666	exon3	c.C170G	p.S57C	.	.	1139	108	528	1	.	133
SASH1	23328	broad.mit.edu	37	6	148855051	148855051	+	Missense_Mutation	SNP	C	C	T	rs181967135		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SASH1	NM_015278	exon15	c.C1879T	p.R627C	.	.	137	4	161	0	C|0.999;T|0.000	90
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38945427	38945427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN11A	NM_014139	exon12	c.A1771T	p.T591S	.	.	361	119	372	1	.	99
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166897947	166897947	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN1A	NM_001165963	exon13	c.T2209A	p.C737S	.	.	64	9	43	0	.	147
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166245904	166245904	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN2A	NM_001040143	exon26	c.A5588T	p.K1863M	.	.	370	90	401	1	.	142
SCN5A	6331	broad.mit.edu	37	3	38591919	38591919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN5A	NM_198056	exon28	c.A5944G	p.R1982G	.	.	221	6	181	0	.	98
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167163108	167163108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SCN9A	NM_002977	exon4	c.T379G	p.L127V	.	.	76	31	105	0	.	181
SDR9C7	121214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57324233	57324233	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SDR9C7	NM_148897	exon2	c.C337T	p.L113L	.	.	196	11	141	0	.	90
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48058775	48058775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SEMA6D	NM_020858	exon16	c.C1648A	p.L550M	.	.	198	84	175	1	.	138
SETD2	29072	bcgsc.ca	37	3	47144902	47144902	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SETD2	NM_014159	exon7	c.C4851T	p.A1617A	.	.	83	6	90	1	.	1273
SEZ6L	23544	broad.mit.edu	37	22	26690333	26690333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SEZ6L	NM_021115	exon3	c.A911G	p.N304S	.	.	164	4	192	0	.	95
SFXN4	119559	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	120914639	120914639	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SFXN4	NM_213649	exon11	c.A667T	p.K223X	.	.	204	15	251	0	.	91
SHANK3	85358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51121840	51121840	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SHANK3	NM_033517	exon8	c.T958A	p.F320I	.	.	185	12	203	1	.	69
SI	6476	broad.mit.edu;bcgsc.ca	37	3	164786876	164786876	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SI	NM_001041	exon4	c.A363T	p.T121T	.	.	352	13	289	0	.	104
SIPA1L2	57568	broad.mit.edu	37	1	232649655	232649655	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SIPA1L2	NM_020808	exon1	c.A1431T	p.I477I	.	.	248	6	181	1	.	95
SLC11A2	4891	broad.mit.edu;bcgsc.ca	37	12	51385457	51385457	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC11A2	NM_001174127	exon15	c.1348-2A>T	.	.	.	215	7	184	0	.	153
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64366298	64366298	+	Silent	SNP	C	C	A	rs150255373	byfrequency;alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC22A12	NM_144585	exon6	c.C973A	p.R325R	.	.	34	19	46	0	C|1.000;T|0.000	91
SLC25A10	1468	hgsc.bcm.edu;bcgsc.ca	37	17	79682550	79682550	+	Missense_Mutation	SNP	C	C	T	rs199824906		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC25A10	NM_001270888	exon3	c.C256T	p.R86W	.	.	88	4	141	0	C|0.999;T|0.000	90
SLC25A39	51629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42398495	42398495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC25A39	NM_001143780	exon8	c.G622A	p.A208T	.	.	86	23	119	0	.	91
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	92352644	92352644	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC26A7	NM_134266	exon8	c.T891A	p.P297P	.	.	217	13	152	0	.	92
SLC35B2	347734	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44223243	44223243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC35B2	NM_178148	exon4	c.G499T	p.A167S	.	.	300	89	266	1	.	91
SLC35F2	54733	ucsc.edu;bcgsc.ca	37	11	107677567	107677567	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC35F2	NM_017515	exon4	c.T450C	p.A150A	.	.	197	80	178	3	.	90
SLC4A9	83697	bcgsc.ca;mdanderson.org	37	5	139744102	139744102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC4A9	NM_001258428	exon11	c.T1615A	p.F539I	.	.	285	19	239	2	.	67
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85279337	85279337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC6A15	NM_018057	exon4	c.T451C	p.C151R	.	.	135	45	116	0	.	93
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110709579	110709579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLC6A17	NM_001010898	exon2	c.C28A	p.R10S	.	.	366	163	296	0	.	92
SLIT1	6585	broad.mit.edu	37	10	98773581	98773581	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SLIT1	NM_003061	exon30	c.T3120A	p.C1040X	.	.	175	4	144	1	.	94
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156230352	156230352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SMG5	NM_015327	exon15	c.A2173T	p.S725C	.	.	289	18	236	0	.	231
SPDL1	54908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169023605	169023605	+	Missense_Mutation	SNP	C	C	T	rs145815866	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_017785	exon8	c.C932T	p.T311I	.	.	226	70	207	0	C|1.000;G|0.000	.
SPDYC	387778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64939933	64939933	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SPDYC	NM_001008778	exon5	c.C373T	p.L125L	.	.	263	17	206	0	.	90
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	220333737	220333737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SPEG	NM_005876	exon12	c.T3458A	p.V1153E	.	.	80	9	106	0	.	383
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	136324224	136324224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SPOCK1	NM_004598	exon8	c.T815A	p.I272N	.	.	395	137	349	0	.	91
SRD5A2	6716	broad.mit.edu;bcgsc.ca	37	2	31756443	31756443	+	RNA	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	.	.	.	77	6	87	0	.	.
SRRM2	23524	bcgsc.ca	37	16	2818097	2818097	+	Missense_Mutation	SNP	C	C	G	rs117824484		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SRRM2	NM_016333	exon11	c.C7568G	p.A2523G	.	.	281	7	200	0	C|0.998;G|0.002	93
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104067722	104067722	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	STAB2	NM_017564	exon23	c.A2409T	p.I803I	.	.	141	13	150	0	.	104
STAT3	6774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40474482	40474482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	STAT3	NM_003150	exon21	c.A1919T	p.Y640F	.	.	390	22	343	0	.	1271
STRIP1	85369	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110585809	110585809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_033088	exon9	c.C985G	p.R329G	.	.	164	50	117	1	.	.
STXBP4	252983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	53077023	53077023	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	STXBP4	NM_178509	exon6	c.A318T	p.I106I	.	.	144	8	125	0	.	91
SUPT6H	6830	hgsc.bcm.edu;bcgsc.ca	37	17	27017195	27017196	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SUPT6H	NM_003170	exon26	c.3438_3439del	p.1146_1147del	.	.	277	80	269	0	.	93
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33403036	33403036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	SYNGAP1	NM_006772	exon6	c.T617C	p.I206T	.	.	176	50	147	0	.	48
TAF1D	79101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93471382	93471382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TAF1D	NM_024116	exon3	c.T352C	p.S118P	.	.	22	8	31	0	.	90
TAF1L	138474	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32630489	32630489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TAF1L	NM_153809	exon1	c.A5089G	p.T1697A	.	.	215	36	281	0	.	870
TAF8	129685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	42036240	42036240	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TAF8	NM_138572	exon7	c.A675T	p.T225T	.	.	302	20	221	0	.	91
TANC1	85461	broad.mit.edu	37	2	160076337	160076337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TANC1	NM_033394	exon22	c.A3637C	p.T1213P	.	.	162	4	202	2	.	92
TAS1R3	83756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1268035	1268035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TAS1R3	NM_152228	exon3	c.G1124T	p.C375F	.	.	52	13	57	0	.	22
TDRD5	163589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179562719	179562719	+	Silent	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TDRD5	NM_173533	exon3	c.G357A	p.R119R	.	.	360	120	268	1	.	94
TENM2	57451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167474526	167474526	+	Silent	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_001122679	exon6	c.T1281C	p.D427D	.	.	486	136	417	2	.	.
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30703652	30703652	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TEX15	NM_031271	exon1	c.A2882T	p.Q961L	.	.	109	11	103	0	.	97
TFRC	7037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195785461	195785461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TFRC	NM_001128148	exon15	c.A1579T	p.N527Y	.	.	96	9	71	1	.	653
TGM6	343641	broad.mit.edu;bcgsc.ca	37	20	2397908	2397908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TGM6	NM_198994	exon10	c.A1367T	p.K456M	.	.	119	6	118	1	.	94
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	43571320	43571320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TGM7	NM_052955	exon11	c.A1834G	p.I612V	.	.	113	6	89	0	.	92
TIMP4	7079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	12195118	12195118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TIMP4	NM_003256	exon5	c.A572T	p.Q191L	.	.	485	35	382	0	.	226
TIMP4	7079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12198366	12198366	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TIMP4	NM_003256	exon3	c.T306C	p.C102C	.	.	177	53	135	0	.	226
TKTL1	8277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153558006	153558006	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TKTL1	NM_012253	exon13	c.A1759T	p.I587L	.	.	222	16	97	0	.	134
TMEM127	55654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96919803	96919803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TMEM127	NM_001193304	exon4	c.A460G	p.I154V	.	.	111	43	155	0	.	90
TMEM48	55706	hgsc.bcm.edu	37	1	54272140	54272140	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TMEM48	NM_018087	exon9	c.C942A	p.C314X	.	.	92	4	87	0	.	92
TNC	3371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117844994	117844994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TNC	NM_002160	exon5	c.T2224A	p.W742R	.	.	146	61	198	0	.	517
TNF	7124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31544903	31544903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TNF	NM_000594	exon4	c.A291T	p.Q97H	.	.	64	4	65	0	.	1085
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A659G	p.Y220C	.	.	158	74	212	0	.	70225
TPH1	7166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	18057649	18057649	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TPH1	NM_004179	exon2	c.C158G	p.S53X	.	.	58	13	51	0	.	90
TPSD1	23430	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1308140	1308140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TPSD1	NM_012217	exon4	c.A601T	p.T201S	.	.	275	14	244	0	.	90
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110099893	110099893	+	Missense_Mutation	SNP	T	T	C	rs144587571	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TRHR	NM_003301	exon1	c.T152C	p.M51T	.	.	237	101	183	0	T|1.000;G|0.000	620
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	72958812	72958812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TRPA1	NM_007332	exon17	c.C1997A	p.P666Q	.	.	39	4	37	0	.	230
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	31325077	31325077	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TRPM1	NM_001252020	exon21	c.A2818T	p.I940F	.	.	236	10	253	0	.	94
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	31768845	31768845	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TSHZ3	NM_020856	exon2	c.T1854A	p.T618T	.	.	192	14	169	0	.	232
TSKU	25987	hgsc.bcm.edu;broad.mit.edu	37	11	76506948	76506950	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TSKU	NM_015516	exon2	c.288_290del	p.96_97del	.	.	211	22	214	0	.	90
TTN	7273	broad.mit.edu	37	2	179623851	179623851	+	Missense_Mutation	SNP	C	C	T	rs187703540	by1000genomes	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TTN	NM_001267550	exon44	c.G10163A	p.R3388Q	.	.	186	5	207	1	C|0.997;T|0.003	636
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179433349	179433349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	TTN	NM_001267550	exon326	c.C77510T	p.P25837L	.	.	295	27	279	0	.	636
UBQLNL	143630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	5537570	5537570	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UBQLNL	NM_145053	exon1	c.A102T	p.I34I	.	.	138	10	110	0	.	136
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19480377	19480377	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UBR4	NM_020765	exon45	c.A6515T	p.N2172I	.	.	430	245	476	2	.	612
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69962549	69962549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UGT2B7	NM_001074	exon1	c.C311A	p.T104K	.	.	66	28	67	0	.	92
ULK1	8408	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132396633	132396633	+	Silent	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ULK1	NM_003565	exon13	c.A1095G	p.P365P	.	.	75	37	204	2	.	758
UMODL1	89766	broad.mit.edu	37	21	43505473	43505473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UMODL1	NM_173568	exon4	c.A554T	p.Q185L	.	.	114	5	130	0	.	93
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210782504	210782504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UNC80	NM_032504	exon31	c.C4835T	p.A1612V	.	.	124	39	122	0	.	90
UPF1	5976	hgsc.bcm.edu;broad.mit.edu	37	19	18967008	18967008	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	UPF1	NM_002911	exon13	c.C1723T	p.Q575X	.	.	130	8	120	0	.	91
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215972280	215972280	+	Silent	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	USH2A	NM_206933	exon50	c.A9927G	p.G3309G	.	.	410	168	284	0	.	115
USP8	9101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50782610	50782610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	USP8	NM_001128610	exon14	c.A2122G	p.R708G	.	.	146	43	137	0	.	658
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12313850	12313850	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	VPS13D	NM_015378	exon7	c.T636A	p.T212T	.	.	332	109	247	0	.	95
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22126671	22126671	+	Silent	SNP	C	C	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	VWA3A	NM_173615	exon9	c.C693T	p.L231L	.	.	173	36	116	0	.	1
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	61026645	61026645	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	VWCE	NM_152718	exon20	c.A2370T	p.S790S	.	.	145	8	112	0	.	91
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	112889035	112889035	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	YTHDC2	NM_022828	exon13	c.A1846T	p.I616F	.	.	112	7	79	0	.	92
ZBED4	9889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50278080	50278104	+	Frame_Shift_Del	DEL	ACCTCCCTGCTCTCCATTACGATGA	ACCTCCCTGCTCTCCATTACGATGA	-	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	ACCTCCCTGCTCTCCATTACGATGA	ACCTCCCTGCTCTCCATTACGATGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZBED4	NM_014838	exon2	c.770_794del	p.257_265del	.	.	139	0	164	0	.	92
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	52943444	52943444	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZCCHC11	NM_015269	exon12	c.A1959T	p.V653V	.	.	122	11	103	0	.	93
ZDHHC11	79844	broad.mit.edu	37	5	825360	825360	+	Silent	SNP	T	T	C	rs201174878		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZDHHC11	NM_024786	exon8	c.A942G	p.K314K	.	.	224	4	196	1	T|0.999;C|0.001	92
ZEB2	9839	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	145155986	145155986	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZEB2	NM_014795	exon8	c.A2768T	p.Y923F	.	.	323	99	337	2	.	297
ZFPL1	7542	broad.mit.edu	37	11	64853926	64853926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZFPL1	NM_006782	exon4	c.A254T	p.Q85L	.	.	124	6	123	0	.	91
ZIC4	84107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147108887	147108887	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZIC4	NM_001168378	exon4	c.A985T	p.S329C	.	.	80	7	172	0	.	91
ZNF211	10520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58152706	58152706	+	Silent	SNP	T	T	G	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF211	NM_001265597	exon5	c.T1047G	p.P349P	.	.	77	23	94	0	.	92
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	90473063	90473063	+	Silent	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF326	NM_182976	exon5	c.A369T	p.G123G	.	.	228	19	151	0	.	91
ZNF329	79673	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58639809	58639809	+	Silent	SNP	G	G	A	rs768079	byfrequency	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF329	NM_024620	exon4	c.C1062T	p.D354D	.	.	153	69	132	0	G|0.977;A|0.023	91
ZNF415	55786	broad.mit.edu	37	19	53611780	53611780	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF415	NM_018355	exon4	c.T1518A	p.S506R	.	.	211	5	192	0	.	91
ZNF41	7592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47307358	47307358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF41	NM_007130	exon5	c.A1811G	p.E604G	.	.	236	202	103	0	.	133
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	109734475	109734475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF462	NM_021224	exon8	c.T6617A	p.I2206N	.	.	229	16	323	0	.	95
ZNF547	284306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	57889239	57889239	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF547	NM_173631	exon4	c.A895T	p.S299C	.	.	130	9	117	0	.	91
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	37677114	37677114	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF585B	NM_152279	exon5	c.A1325T	p.H442L	.	.	128	11	139	0	.	91
ZNF613	79898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52448896	52448896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF613	NM_001031721	exon6	c.A1760T	p.N587I	.	.	226	80	165	0	.	91
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30793613	30793613	+	Missense_Mutation	SNP	T	T	A	rs200655215	alternate_allele	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_001080417	exon3	c.A2036T	p.Q679L	.	.	186	13	140	0	T|0.999;C|0.000	.
ZNF727	442319	broad.mit.edu	37	7	63538687	63538687	+	Missense_Mutation	SNP	A	A	T	rs145191276	by1000genomes	TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	NM_001159522	exon4	c.A1260T	p.E420D	.	.	126	4	81	0	A|0.999;T|0.001	.
ZNF773	374928	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58018242	58018242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF773	NM_198542	exon4	c.C779A	p.A260D	.	.	155	10	125	1	.	91
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21132284	21132284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZNF85	NM_001256171	exon5	c.G1054T	p.A352S	.	.	18	12	32	0	.	514
ZPBP	11055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50129226	50129226	+	Silent	SNP	T	T	A	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	ZPBP	NM_007009	exon2	c.A207T	p.P69P	.	.	103	10	97	0	.	90
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	88330413	88330414	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	p.F924N	.	.	.	.	.	.	.	
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41384983	41384984	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	p.A2006L	.	.	.	.	.	.	.	
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	147675070	147675071	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-ED-A459-01A-11D-A25V-10	TCGA-ED-A459-10A-01D-A25V-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7fc7b316-f3d3-4e71-9417-423fe334e6bc	ba12fec9-e575-4fff-9119-8989b3cf1d18	.	.	.	.	.	p.C791F	.	.	.	.	.	.	.	
