Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	broad.mit.edu	37	19	58863781	58863781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	A1BG	NM_130786	exon4	c.G481T	p.V161L	.	.	202	5	181	0	.	90
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169791714	169791714	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ABCB11	NM_003742	exon23	c.C3036T	p.L1012L	.	.	165	16	174	0	.	139
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77895740	77895740	+	Missense_Mutation	SNP	A	A	T	rs113879497	byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ADNP2	NM_014913	exon4	c.A2444T	p.N815I	.	.	94	16	92	0	A|0.999;G|0.001	140
AK8	158067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135698618	135698618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	AK8	NM_152572	exon9	c.T863A	p.L288Q	.	.	121	11	140	0	.	90
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4737905	4737905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	AKAP3	NM_006422	exon4	c.G163A	p.E55K	.	.	181	37	191	0	.	292
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49720037	49720037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	APEH	NM_001640	exon19	c.T1751C	p.M584T	.	.	194	35	223	0	.	91
ARHGAP5	394	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	32563379	32563379	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ARHGAP5	NM_001173	exon2	c.T3504A	p.Y1168X	.	.	141	11	163	0	.	94
ARHGEF15	22899	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	8216404	8216404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ARHGEF15	NM_025014	exon3	c.A766G	p.I256V	.	.	101	13	85	1	.	230
ARSA	410	hgsc.bcm.edu	37	22	51064685	51064685	+	Silent	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ARSA	NM_001085426	exon6	c.C876A	p.S292S	.	.	99	4	133	0	.	92
ASNSD1	54529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190531503	190531503	+	Silent	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ASNSD1	NM_019048	exon4	c.G645T	p.L215L	.	.	57	7	46	0	.	93
ASXL1	171023	broad.mit.edu	37	20	31023840	31023840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ASXL1	NM_015338	exon12	c.A3325T	p.M1109L	.	.	244	5	257	1	.	2057
ATAD2	29028	hgsc.bcm.edu	37	8	124382136	124382144	+	In_Frame_Del	DEL	CATCTTCTT	CATCTTCTT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	CATCTTCTT	CATCTTCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ATAD2	NM_014109	exon7	c.848_856del	p.283_286del	.	.	63	24	68	0	.	92
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28846411	28846411	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ATXN2L	NM_148414	exon19	c.A2466G	p.P822P	.	.	168	22	200	0	.	92
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52441262	52441262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	BAP1	NM_004656	exon7	c.T508G	p.F170V	.	.	148	23	160	0	.	1032
BLM	641	hgsc.bcm.edu	37	15	91354495	91354495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	BLM	NM_000057	exon21	c.C3935A	p.A1312D	.	.	87	4	81	0	.	664
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79808426	79808426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	BMP2K	NM_198892	exon15	c.A2050G	p.I684V	.	.	101	12	97	0	.	383
BSN	8927	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	49680416	49680416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	BSN	NM_003458	exon3	c.A1349G	p.K450R	.	.	236	16	252	3	.	97
C11orf95	65998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	63531074	63531074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001144936	exon5	c.A1853G	p.K618R	.	.	46	6	75	0	.	.
C1orf146	388649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92711222	92711222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	C1orf146	NM_001012425	exon6	c.C534A	p.N178K	.	.	153	28	176	0	.	91
C6orf15	29113	broad.mit.edu;ucsc.edu	37	6	31079842	31079842	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	C6orf15	NM_014070	exon2	c.G294A	p.W98X	.	.	173	31	166	1	.	90
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2614096	2614096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CACNA1C	NM_001129831	exon8	c.T1202C	p.L401P	.	.	156	17	176	0	.	34
CACNA1G	8913	broad.mit.edu	37	17	48701833	48701833	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CACNA1G	NM_018896	exon37	c.C6342T	p.I2114I	.	.	343	9	354	0	.	67
CAMP	820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48266103	48266103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CAMP	NM_004345	exon3	c.G329A	p.R110Q	.	.	187	27	231	0	.	91
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4876952	4876952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CAMTA2	NM_001171167	exon13	c.G2198A	p.R733Q	.	.	90	11	105	0	.	91
CASQ1	844	broad.mit.edu	37	1	160165695	160165695	+	Missense_Mutation	SNP	G	G	T	rs146742224	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CASQ1	NM_001231	exon6	c.G660T	p.K220N	.	.	137	5	117	1	G|1.000;T|0.000	90
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106166547	106166547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCDC147	NM_001008723	exon15	c.T2252G	p.L751R	.	.	121	15	89	0	.	71
CCDC168	643677	ucsc.edu	37	13	103398268	103398268	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001146197	exon4	c.A4779G	p.P1593P	.	.	189	24	175	2	.	.
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu	37	13	103396874	103396874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001146197	exon4	c.A6173T	p.Y2058F	.	.	80	4	83	0	.	.
CCL13	6357	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	32685070	32685070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCL13	NM_005408	exon3	c.A217G	p.I73V	.	.	146	13	104	0	.	90
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550283	167550283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCR6	NM_004367	exon3	c.T565C	p.Y189H	.	.	215	37	212	0	.	227
CD70	970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6586092	6586092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CD70	NM_001252	exon3	c.C521A	p.T174K	.	.	102	16	93	0	.	227
CDH11	1009	broad.mit.edu;bcgsc.ca	37	16	64981643	64981643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDH11	NM_001797	exon13	c.G2254A	p.A752T	.	.	131	8	160	1	.	852
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	64981642	64981642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDH11	NM_001797	exon13	c.C2255A	p.A752D	.	.	130	8	161	0	.	852
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123210343	123210343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDK5RAP2	NM_018249	exon22	c.A2855G	p.Y952C	.	.	189	24	203	0	.	229
CELSR1	9620	ucsc.edu;mdanderson.org	37	22	46787590	46787590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CELSR1	NM_014246	exon15	c.G6088A	p.G2030S	.	.	14	4	14	0	.	525
CHAMP1	283489	hgsc.bcm.edu	37	13	115090198	115090198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001164144	exon3	c.C881T	p.P294L	.	.	67	4	79	0	.	.
CHMP2A	27243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	59063031	59063031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CHMP2A	NM_198426	exon6	c.C654A	p.N218K	.	.	69	5	76	0	.	90
CHSY3	337876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129520025	129520025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CHSY3	NM_175856	exon3	c.A1190G	p.K397R	.	.	195	30	143	1	.	25
CIAO1	9391	broad.mit.edu	37	2	96933379	96933379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CIAO1	NM_004804	exon3	c.A305G	p.E102G	.	.	178	4	185	1	.	90
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42798805	42798805	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CIC	NM_015125	exon19	c.A4377G	p.P1459P	.	.	114	18	148	0	.	591
CISH	1154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50645332	50645332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CISH	NM_013324	exon4	c.G534T	p.Q178H	.	.	101	7	122	0	.	710
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190030766	190030766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CLDN1	NM_021101	exon2	c.A283G	p.I95V	.	.	191	17	195	0	.	91
CNGB3	54714	bcgsc.ca	37	8	87660100	87660100	+	Missense_Mutation	SNP	T	T	C	rs13265557	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CNGB3	NM_019098	exon8	c.A919G	p.I307V	.	.	207	6	253	1	T|0.940;C|0.060	93
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	135122994	135122994	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CNOT4	NM_001190850	exon2	c.86delT	p.F29fs	.	.	225	35	249	0	.	90
COPZ1	22818	broad.mit.edu	37	12	54734289	54734289	+	Missense_Mutation	SNP	A	A	G	rs11170877	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	COPZ1	NM_001271736	exon2	c.A1G	p.M1V	.	.	155	5	199	3	A|0.825;G|0.175	90
COX6A1	1337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120878337	120878337	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	COX6A1	NM_004373	exon3	c.A327G	p.E109E	.	.	221	28	252	0	.	90
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113348909	113348909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSMD3	NM_198123	exon44	c.G6991C	p.E2331Q	.	.	98	22	85	0	.	1132
CSRP3	8048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19206570	19206570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSRP3	NM_003476	exon6	c.G437A	p.R146H	.	.	152	17	160	0	.	90
CSTB	1476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45194153	45194153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSTB	NM_000100	exon3	c.A227G	p.E76G	.	.	341	26	335	0	.	90
CT62	196993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	71404534	71404534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001102658	exon3	c.A88T	p.S30C	.	.	102	12	110	0	.	.
CTBP1-AS1	92070	broad.mit.edu	37	4	1244695	1244695	+	RNA	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	.	.	.	25	4	31	0	.	.
CYBRD1	79901	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172411309	172411309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CYBRD1	NM_024843	exon4	c.A833G	p.D278G	.	.	202	27	213	1	.	90
DACT2	168002	broad.mit.edu	37	6	168711959	168711959	+	Silent	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DACT2	NM_214462	exon2	c.G252T	p.R84R	.	.	47	4	70	1	.	226
DCLRE1B	64858	broad.mit.edu	37	1	114450784	114450784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DCLRE1B	NM_022836	exon3	c.G509A	p.R170Q	.	.	225	5	202	0	.	227
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	70679601	70679601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DDX50	NM_024045	exon8	c.A1103T	p.Q368L	.	.	219	20	282	0	.	91
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65994749	65994749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DENND4A	NM_001144823	exon17	c.G2324T	p.C775F	.	.	190	9	189	0	.	229
DIDO1	11083	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511798	61511798	+	Missense_Mutation	SNP	A	A	C	rs147241583	byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DIDO1	NM_001193369	exon16	c.T5510G	p.V1837G	.	.	154	16	172	1	A|0.999;G|0.001	96
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511821	61511821	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DIDO1	NM_001193369	exon16	c.T5487C	p.S1829S	.	.	129	14	156	0	.	96
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	84921530	84921530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DNAH6	NM_001370	exon46	c.G7450A	p.E2484K	.	.	158	13	152	0	.	69
DPCR1	135656	broad.mit.edu	37	6	30920746	30920746	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DPCR1	NM_080870	exon3	c.4036-2A>T	.	.	.	157	6	195	1	.	90
DYNC2H1	79659	broad.mit.edu	37	11	103027432	103027432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DYNC2H1	NM_001377	exon26	c.C4060T	p.P1354S	.	.	25	3	34	0	.	68
DYNLT1	6993	broad.mit.edu;bcgsc.ca	37	6	159057888	159057888	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DYNLT1	NM_006519	exon5	c.A313T	p.I105F	.	.	198	7	247	1	.	90
E2F8	79733	broad.mit.edu	37	11	19259607	19259607	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	E2F8	NM_024680	exon3	c.A88T	p.I30F	.	.	137	5	122	0	.	91
EBP	10682	bcgsc.ca	37	X	48382174	48382174	+	Silent	SNP	G	G	T	rs3048	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EBP	NM_006579	exon2	c.G15T	p.A5A	.	.	100	5	104	0	G|0.693;T|0.307	131
EDEM3	80267	broad.mit.edu	37	1	184663372	184663372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EDEM3	NM_025191	exon20	c.A2624G	p.N875S	.	.	162	4	130	0	.	91
EGFR	1956	broad.mit.edu;bcgsc.ca	37	7	55224279	55224298	+	Frame_Shift_Del	DEL	ACGAATATTAAACACTTCAA	ACGAATATTAAACACTTCAA	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	ACGAATATTAAACACTTCAA	ACGAATATTAAACACTTCAA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EGFR	NM_201283	exon9	c.1060_1079del	p.354_360del	.	.	147	8	142	0	.	44910
EPHB2	2048	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23233358	23233358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EPHB2	NM_004442	exon11	c.G2047A	p.V683I	.	.	176	23	147	1	.	1381
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184294923	184294923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EPHB3	NM_004443	exon5	c.C1306A	p.P436T	.	.	60	7	68	0	.	1455
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96215831	96215831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ERAP2	NM_001130140	exon2	c.A442G	p.I148V	.	.	209	24	205	0	.	68
FAM149A	25854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187073131	187073131	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FAM149A	NM_001006655	exon3	c.A18G	p.K6K	.	.	252	11	261	0	.	90
FAM188A	80013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15876612	15876612	+	Missense_Mutation	SNP	T	T	C	rs187883529		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FAM188A	NM_024948	exon7	c.A580G	p.I194V	.	.	55	5	51	0	T|0.999;C|0.001	228
FANCL	55120	broad.mit.edu;bcgsc.ca	37	2	58453916	58453916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FANCL	NM_018062	exon4	c.A220G	p.M74V	.	.	207	8	194	0	.	661
FARS2	10667	hgsc.bcm.edu;bcgsc.ca	37	6	5369076	5369076	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FARS2	NM_006567	exon2	c.G273A	p.E91E	.	.	275	11	276	0	.	90
FASTKD1	79675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170428398	170428398	+	Missense_Mutation	SNP	C	C	T	rs150915965	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FASTKD1	NM_024622	exon2	c.G142A	p.D48N	.	.	125	24	132	0	C|1.000;T|0.000	119
FBXO31	79791	broad.mit.edu;bcgsc.ca	37	16	87376465	87376487	+	Frame_Shift_Del	DEL	GCCGGCTGGTGGGCTCACCTCCT	GCCGGCTGGTGGGCTCACCTCCT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	GCCGGCTGGTGGGCTCACCTCCT	GCCGGCTGGTGGGCTCACCTCCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FBXO31	NM_024735	exon5	c.728_732del	p.243_244del	.	.	132	8	178	0	.	226
FBXW10	10517	broad.mit.edu	37	17	18670128	18670128	+	Nonsense_Mutation	SNP	C	C	T	rs138625739		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FBXW10	NM_001267585	exon9	c.C1657T	p.R553X	.	.	480	5	504	2	C|1.000;T|0.000	91
FER1L5	90342	hgsc.bcm.edu;mdanderson.org	37	2	97312182	97312182	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FER1L5	NM_001113382	exon2	c.T130A	p.W44R	.	.	273	14	325	0	.	23
FGF8	2253	hgsc.bcm.edu	37	10	103534534	103534534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FGF8	NM_033163	exon4	c.G292A	p.A98T	.	.	87	4	96	0	.	522
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281931	152281931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FLG	NM_002016	exon3	c.G5431T	p.D1811Y	.	.	466	65	384	1	.	106
FRMD6	122786	bcgsc.ca	37	14	52156572	52156572	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FRMD6	NM_001267046	exon2	c.T18C	p.F6F	.	.	249	11	269	4	.	524
FRMD6	122786	bcgsc.ca	37	14	52156575	52156575	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FRMD6	NM_001267046	exon2	c.T21C	p.H7H	.	.	254	11	276	4	.	524
FRMD6	122786	bcgsc.ca	37	14	52156605	52156605	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FRMD6	NM_001267046	exon2	c.T51C	p.S17S	.	.	298	11	315	4	.	524
FRMD6	122786	bcgsc.ca	37	14	52156626	52156626	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FRMD6	NM_001267046	exon2	c.C72T	p.N24N	.	.	293	13	310	4	.	524
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89578243	89578243	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	GBP2	NM_004120	exon8	c.T1274A	p.F425Y	.	.	193	25	233	0	.	91
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154311099	154311099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	GEMIN5	NM_015465	exon5	c.G700A	p.A234T	.	.	140	27	119	0	.	228
GPRIN1	114787	hgsc.bcm.edu	37	5	176026120	176026143	+	In_Frame_Del	DEL	CTCAAAGACCCAGGATCCTCCTTC	CTCAAAGACCCAGGATCCTCCTTC	-	rs142779818		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	CTCAAAGACCCAGGATCCTCCTTC	CTCAAAGACCCAGGATCCTCCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	GPRIN1	NM_052899	exon2	c.693_716del	p.231_239del	.	.	179	34	171	0	.	92
GRAP2	9402	hgsc.bcm.edu	37	22	40351828	40351828	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	GRAP2	NM_004810	exon3	c.A84T	p.L28F	.	.	100	4	109	0	.	227
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18688120	18688120	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HDAC9	NM_178425	exon10	c.G1281A	p.L427L	.	.	65	9	63	0	.	227
HERC2	8924	broad.mit.edu	37	15	28359917	28359917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HERC2	NM_004667	exon90	c.A13754G	p.Y4585C	.	.	167	5	142	0	.	234
HERC2	8924	broad.mit.edu	37	15	28508126	28508126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HERC2	NM_004667	exon15	c.A2060G	p.Q687R	.	.	224	6	225	0	.	234
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91784929	91784929	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HFM1	NM_001017975	exon24	c.A2601G	p.L867L	.	.	88	14	111	0	.	112
HIST1H2BN	8341	broad.mit.edu	37	6	27806652	27806652	+	Missense_Mutation	SNP	C	C	A	rs144837583	alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HIST1H2BN	NM_003520	exon1	c.C213A	p.F71L	.	.	190	4	138	0	C|1.000;T|0.000	68
HMCN1	83872	broad.mit.edu	37	1	186086663	186086663	+	Missense_Mutation	SNP	C	C	A	rs12135335		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HMCN1	NM_031935	exon77	c.C11756A	p.T3919N	.	.	138	3	133	1	C|1.000;|0.000	113
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162760596	162760596	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HSD17B7	NM_016371	exon1	c.A6G	p.R2R	.	.	671	86	547	0	.	91
HSD17B7P2	158160	broad.mit.edu	37	10	38645388	38645388	+	RNA	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	.	.	.	652	15	646	0	.	.
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137893621	137893621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HSPA9	NM_004134	exon13	c.A1570G	p.I524V	.	.	211	34	224	0	.	226
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3240242	3240242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HTT	NM_002111	exon65	c.T8960A	p.F2987Y	.	.	197	18	202	0	.	281
IGFBP5	3488	broad.mit.edu;bcgsc.ca	37	2	217542924	217542924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	IGFBP5	NM_000599	exon3	c.C598A	p.L200M	.	.	350	12	390	0	.	522
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	133799610	133799610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	IGSF9B	NM_014987	exon12	c.G1587A	p.W529X	.	.	133	14	154	0	.	68
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	266301	266301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	IQSEC3	NM_001170738	exon6	c.T2264C	p.I755T	.	.	315	45	385	0	.	560
IRS4	8471	bcgsc.ca	37	X	107979515	107979515	+	Silent	SNP	C	C	T	rs2073115	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	IRS4,colon,carcinoma,-1	IRS4	NM_003604	exon1	c.G60A	p.A20A	.	.	108	6	98	0	C|0.679;T|0.321	623
ITGAE	3682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3680880	3680880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ITGAE	NM_002208	exon2	c.G109A	p.V37M	.	.	147	20	141	1	.	161
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	127642469	127642469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KBTBD12	NM_207335	exon1	c.T565A	p.S189T	.	.	105	5	111	0	.	23
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61613399	61613399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KCNH6	NM_030779	exon6	c.G1471A	p.V491I	.	.	145	16	151	0	.	91
KCNV1	27012	broad.mit.edu	37	8	110986591	110986591	+	Silent	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KCNV1	NM_014379	exon1	c.G27T	p.L9L	.	.	4	2	12	0	.	226
KCTD19	146212	broad.mit.edu	37	16	67328001	67328001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KCTD19	NM_001100915	exon12	c.T1664A	p.L555Q	.	.	245	5	290	0	.	69
KDM1B	221656	broad.mit.edu	37	6	18166561	18166561	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KDM1B	NM_153042	exon6	c.C369T	p.T123T	.	.	143	4	153	0	.	91
KDM8	79831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27232040	27232040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001145348	exon8	c.T1354C	p.W452R	.	.	207	23	192	0	.	.
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10600002	10600002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KEAP1	NM_012289	exon5	c.A1574G	p.Y525C	.	.	152	9	197	0	.	637
KIAA0040	9674	hgsc.bcm.edu	37	1	175129922	175129922	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001162895	exon3	c.T228G	p.D76E	.	.	108	6	91	0	.	.
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001162895	exon3	c.G226A	p.D76N	.	.	105	4	91	0	.	.
KIAA0141	9812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	141314143	141314143	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA0141	NM_001142603	exon10	c.A1141T	p.N381Y	.	.	145	11	164	0	.	91
KIAA1210	57481	ucsc.edu;bcgsc.ca	37	X	118230575	118230575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA1210	NM_020721	exon8	c.C1148T	p.T383I	.	.	63	18	74	2	.	67
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	138629875	138629875	+	Splice_Site	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA1244	NM_020340	exon24	c.3974-1G>C	.	.	.	149	9	161	0	.	228
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	51901391	51901391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIF2B	NM_032559	exon1	c.G997A	p.A333T	.	.	122	18	117	0	.	98
KRTAP13-3	337960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31797785	31797785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KRTAP13-3	NM_181622	exon1	c.C446T	p.P149L	.	.	72	7	103	0	.	92
KRTAP4-3	85290	bcgsc.ca	37	17	39324104	39324104	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KRTAP4-3	NM_033187	exon1	c.T321C	p.S107S	.	.	300	26	284	4	.	22
LAMA2	3908	broad.mit.edu;bcgsc.ca	37	6	129674449	129674449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LAMA2	NM_000426	exon32	c.G4664T	p.R1555M	.	.	229	8	232	0	.	162
LEMD3	23592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	65633985	65633985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LEMD3	NM_014319	exon8	c.A2093G	p.H698R	.	.	131	8	113	0	.	516
LGALS4	3960	broad.mit.edu	37	19	39299479	39299479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LGALS4	NM_006149	exon3	c.G244A	p.G82R	.	.	244	5	211	0	.	92
LGI3	203190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22006415	22006415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LGI3	NM_139278	exon8	c.G905A	p.G302D	.	.	158	29	228	0	.	91
LOC200772	0	bcgsc.ca;mdanderson.org	37	2	241898846	241898846	+	RNA	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	.	.	.	196	30	294	1	.	.
LRRC15	131578	broad.mit.edu;mdanderson.org	37	3	194081707	194081707	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LRRC15	NM_001135057	exon3	c.C84T	p.Y28Y	.	.	35	7	35	0	.	71
MAGEA4	4103	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151093077	151093077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MAGEA4	NM_001011548	exon3	c.A941T	p.E314V	.	.	103	8	132	0	.	194
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23890789	23890789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_019066	exon1	c.G2101A	p.V701I	.	.	76	21	100	0	.	.
MAP2	4133	broad.mit.edu	37	2	210574779	210574779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MAP2	NM_002374	exon12	c.C4874T	p.T1625I	.	.	223	7	202	0	.	591
MARCH11	441061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16067841	16067841	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001102562	exon4	c.T948G	p.N316K	.	.	75	8	69	0	.	.
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220826560	220826560	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MARK1	NM_018650	exon16	c.G1854A	p.Q618Q	.	.	237	12	230	0	.	802
MAT1A	4143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82034339	82034339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MAT1A	NM_000429	exon8	c.C1022A	p.T341K	.	.	178	22	236	2	.	90
MERTK	10461	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112686826	112686826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MERTK	NM_006343	exon2	c.T191A	p.M64K	.	.	353	39	346	1	.	1463
MGAM	8972	broad.mit.edu	37	7	141794419	141794419	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MGAM	NM_004668	exon39	c.4619-1G>A	.	.	.	173	5	144	0	.	70
MIER1	57708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67436525	67436525	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MIER1	NM_001077700	exon9	c.T807C	p.P269P	.	.	126	11	118	0	.	91
MINPP1	9562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89312033	89312033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MINPP1	NM_004897	exon5	c.A1262G	p.H421R	.	.	173	7	196	0	.	227
MIR1179	100302235	broad.mit.edu	37	15	89151428	89151428	+	RNA	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	.	.	.	159	8	175	0	.	.
MMP16	4325	hgsc.bcm.edu;broad.mit.edu	37	8	89180168	89180168	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MMP16	NM_005941	exon4	c.G439T	p.E147X	.	.	142	7	149	0	.	231
MOCOS	55034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	33778679	33778679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MOCOS	NM_017947	exon3	c.A259G	p.S87G	.	.	237	12	222	0	.	91
MRO	83876	broad.mit.edu	37	18	48346026	48346026	+	Silent	SNP	A	A	G	rs72627210	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MRO	NM_001127175	exon2	c.T66C	p.T22T	.	.	158	5	172	1	A|0.982;G|0.018	90
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103271393	103271393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001198812	exon3	c.T635C	p.I212T	.	.	63	15	55	0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9059729	9059729	+	Silent	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MUC16	NM_024690	exon3	c.C27717G	p.S9239S	.	.	281	26	367	0	.	566
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10356573	10356573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MYH4	NM_017533	exon24	c.C3007T	p.L1003F	.	.	271	45	241	1	.	102
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3155037	3155037	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MYOM1	NM_003803	exon11	c.G1551A	p.K517K	.	.	72	9	78	0	.	94
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101726938	101726938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NALCN	NM_052867	exon36	c.C4030G	p.L1344V	.	.	43	7	38	0	.	167
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101759941	101759941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NALCN	NM_052867	exon22	c.C2476A	p.L826I	.	.	140	22	133	0	.	167
NBPF10	100132406	broad.mit.edu	37	1	145297658	145297658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001039703	exon4	c.A533G	p.E178G	.	.	501	8	555	0	.	.
NCOR1	9611	broad.mit.edu;bcgsc.ca	37	17	15942894	15942923	+	In_Frame_Del	DEL	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NCOR1	NM_006311	exon44	c.6779_6808del	p.2260_2270del	.	.	185	9	194	0	.	229
NDUFV2	4729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	9119504	9119504	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NDUFV2	NM_021074	exon4	c.A216G	p.E72E	.	.	113	11	118	0	.	91
NEK10	152110	broad.mit.edu;bcgsc.ca	37	3	27350422	27350422	+	Silent	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NEK10	NM_199347	exon11	c.A711C	p.A237A	.	.	358	14	328	1	.	695
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20805310	20805310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NELL1	NM_006157	exon3	c.T269C	p.L90S	.	.	92	19	115	0	.	155
NEMF	9147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50251367	50251367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NEMF	NM_004713	exon33	c.T3218G	p.V1073G	.	.	59	6	62	0	.	90
NFATC1	4772	broad.mit.edu	37	18	77246858	77246858	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NFATC1	NM_172387	exon9	c.C2664T	p.D888D	.	.	118	6	98	1	.	290
NKAIN2	154215	broad.mit.edu;bcgsc.ca	37	6	124979397	124979397	+	Silent	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NKAIN2	NM_001040214	exon4	c.A339T	p.P113P	.	.	239	11	264	1	.	23
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54310856	54310856	+	Silent	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NLRP12	NM_144687	exon4	c.G2136A	p.L712L	.	.	133	6	158	0	.	211
NMNAT3	349565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139292479	139292479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NMNAT3	NM_178177	exon4	c.G226A	p.G76S	.	.	209	22	253	0	.	90
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	50744637	50744637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NOD2	NM_022162	exon4	c.G815A	p.S272N	.	.	105	10	125	0	.	231
NPLOC4	55666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79589216	79589216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NPLOC4	NM_017921	exon3	c.A185T	p.K62I	.	.	89	9	93	0	.	24
NRP1	8829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	33515205	33515205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NRP1	NM_001024629	exon7	c.C994T	p.L332F	.	.	107	11	91	0	.	525
NUBPL	80224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32031297	32031297	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NUBPL	NM_025152	exon2	c.C132T	p.T44T	.	.	62	11	66	0	.	226
NUDCD3	23386	broad.mit.edu;bcgsc.ca	37	7	44431959	44431979	+	In_Frame_Del	DEL	CACCGCCTGTTCCTCCTCATC	CACCGCCTGTTCCTCCTCATC	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	CACCGCCTGTTCCTCCTCATC	CACCGCCTGTTCCTCCTCATC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NUDCD3	NM_015332	exon5	c.892_912del	p.298_304del	.	.	523	20	565	0	.	90
NUDT6	11162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123814211	123814211	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NUDT6	NM_007083	exon5	c.A723G	p.E241E	.	.	124	6	140	0	.	90
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102334164	102334164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NXF3	NM_022052	exon16	c.G1363A	p.G455R	.	.	275	87	270	0	.	205
OBSCN	84033	broad.mit.edu;bcgsc.ca	37	1	228559645	228559645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OBSCN	NM_001271223	exon105	c.T24037C	p.C8013R	.	.	185	8	164	1	.	403
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158368778	158368778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR10T2	NM_001004475	exon1	c.C479A	p.A160D	.	.	85	5	60	0	.	70
OR13J1	392309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35869767	35869767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR13J1	NM_001004487	exon1	c.T632A	p.L211Q	.	.	108	7	135	0	.	68
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248308834	248308834	+	Missense_Mutation	SNP	C	C	G	rs150844237	alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR2M5	NM_001004690	exon1	c.C385G	p.P129A	.	.	508	26	400	0	C|1.000;T|0.000	71
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248789769	248789769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR2T11	NM_001001964	exon1	c.A661G	p.T221A	.	.	224	18	198	0	.	69
OR4K15	81127	broad.mit.edu;bcgsc.ca	37	14	20444564	20444564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR4K15	NM_001005486	exon1	c.C887T	p.A296V	.	.	208	7	194	0	.	69
OR7D4	125958	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9324952	9324952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR7D4	NM_001005191	exon1	c.G562T	p.A188S	.	.	206	50	275	1	.	71
OR9K2	441639	broad.mit.edu	37	12	55524095	55524095	+	Silent	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR9K2	NM_001005243	exon1	c.A543T	p.S181S	.	.	157	7	173	1	.	69
ORM2	5005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117093116	117093116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ORM2	NM_000608	exon3	c.G302A	p.R101Q	.	.	167	21	143	0	.	90
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	80746178	80746178	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_173591	exon44	c.T5342A	p.F1781Y	.	.	96	8	80	0	.	.
PALMD	54873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100154912	100154912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PALMD	NM_017734	exon7	c.A1096C	p.K366Q	.	.	126	13	159	1	.	71
PANX3	116337	broad.mit.edu	37	11	124481580	124481580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PANX3	NM_052959	exon1	c.T128A	p.V43E	.	.	330	7	321	0	.	68
PAPD7	11044	broad.mit.edu	37	5	6751163	6751163	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PAPD7	NM_001171805	exon11	c.A1122G	p.T374T	.	.	187	6	208	1	.	69
PAX3	5077	broad.mit.edu	37	2	223086064	223086064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PAX3	NM_181457	exon6	c.G835T	p.G279W	.	.	126	3	121	0	.	1821
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	67801110	67801110	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDH9	NM_203487	exon2	c.T1463A	p.L488X	.	.	202	33	170	0	.	96
PCDHA4	56144	broad.mit.edu;bcgsc.ca	37	5	140187738	140187738	+	Silent	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHA4	NM_031500	exon1	c.C966A	p.G322G	.	.	68	6	69	0	.	96
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140203713	140203713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHA5	NM_031501	exon1	c.G2353A	p.V785M	.	.	132	11	161	0	.	137
PCDHB5	26167	hgsc.bcm.edu;mdanderson.org	37	5	140516630	140516630	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHB5	NM_015669	exon1	c.G1614A	p.P538P	.	.	17	6	15	0	.	95
PDGFA	5154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	540840	540840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PDGFA	NM_002607	exon5	c.A493G	p.K165E	.	.	192	28	180	0	.	454
PDLIM7	9260	broad.mit.edu;bcgsc.ca	37	5	176910711	176910711	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PDLIM7	NM_005451	exon13	c.A1308G	p.E436E	.	.	310	10	377	2	.	153
PDSS2	57107	ucsc.edu	37	6	107780265	107780265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PDSS2	NM_020381	exon1	c.C225G	p.D75E	.	.	187	3	164	1	.	92
PHLPP1	23239	broad.mit.edu	37	18	60642857	60642857	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_194449	exon16	c.A3983T	p.E1328V	.	.	152	5	125	0	.	.
PIK3R4	30849	broad.mit.edu;bcgsc.ca	37	3	130422686	130422686	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PIK3R4	NM_014602	exon13	c.A2979G	p.K993K	.	.	356	12	350	0	.	1471
PIP	5304	broad.mit.edu;bcgsc.ca	37	7	142836680	142836680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PIP	NM_002652	exon4	c.T386C	p.V129A	.	.	128	6	125	0	.	91
PLCG1	5335	broad.mit.edu	37	20	39802142	39802142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PLCG1	NM_182811	exon28	c.A3362G	p.Y1121C	.	.	156	4	145	0	.	911
PLK1S1	55857	hgsc.bcm.edu;broad.mit.edu	37	20	21213370	21213370	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001163023	exon9	c.1384-2A>T	.	.	.	132	6	113	0	.	.
PMPCA	23203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139313081	139313081	+	Silent	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PMPCA	NM_015160	exon9	c.C1065G	p.P355P	.	.	137	9	139	0	.	90
POGK	57645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166818288	166818288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	POGK	NM_017542	exon5	c.A472G	p.I158V	.	.	340	63	304	0	.	91
POLDIP3	84271	broad.mit.edu;bcgsc.ca	37	22	42998034	42998034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	POLDIP3	NM_032311	exon3	c.T479G	p.L160R	.	.	188	6	215	1	.	90
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14537808	14537808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	POTEC	NM_001137671	exon3	c.A802G	p.K268E	.	.	348	49	351	0	.	3
PP14571	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	241390200	241390200	+	RNA	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	.	.	.	285	25	357	0	.	.
PPP1CB	5500	ucsc.edu	37	2	29001719	29001719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PPP1CB	NM_206876	exon4	c.T229C	p.Y77H	.	.	46	2	29	0	.	658
PPP1R12A	4659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80199549	80199549	+	Splice_Site	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PPP1R12A	NM_001143885	exon16	c.1824-1G>A	.	.	.	178	32	150	1	.	273
PRR5L	79899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	36459019	36459019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PRR5L	NM_024841	exon7	c.C437A	p.P146Q	.	.	124	5	114	0	.	91
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	198682109	198682109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PTPRC	NM_002838	exon12	c.G1199A	p.C400Y	.	.	140	9	110	0	.	295
QRICH2	84074	bcgsc.ca	37	17	74288472	74288472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	QRICH2	NM_032134	exon4	c.A1838G	p.H613R	.	.	282	14	328	9	.	94
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	QRICH2	NM_032134	exon4	c.A1802T	p.D601V	.	.	292	12	311	7	.	94
RAB35	11021	broad.mit.edu	37	12	120536895	120536895	+	Silent	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RAB35	NM_001167606	exon4	c.C291A	p.V97V	.	.	165	5	168	0	.	227
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20582430	20582430	+	Missense_Mutation	SNP	C	C	T	rs147045442		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RALGAPA2	NM_020343	exon16	c.G2099A	p.R700Q	.	.	67	13	76	0	C|0.999;T|0.000	24
RASD2	23551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35942929	35942929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RASD2	NM_014310	exon2	c.C73G	p.L25V	.	.	129	15	150	0	.	659
RBL1	5933	bcgsc.ca	37	20	35696475	35696475	+	Silent	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RBL1	NM_183404	exon3	c.A405T	p.I135I	.	.	48	4	31	0	.	419
RBM27	54439	broad.mit.edu;bcgsc.ca	37	5	145616906	145616906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RBM27	NM_018989	exon8	c.C1190T	p.P397L	.	.	259	9	317	0	.	70
RGSL1	353299	broad.mit.edu	37	1	182443014	182443014	+	Missense_Mutation	SNP	G	G	C	rs647224	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RGSL1	NM_001137669	exon6	c.G768C	p.W256C	.	.	306	4	250	0	G|0.871;C|0.129	226
RIPK1	8737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	3106115	3106115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RIPK1	NM_003804	exon8	c.A1406G	p.Y469C	.	.	230	10	212	0	.	1044
RNF169	254225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	74546763	74546763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RNF169	NM_001098638	exon6	c.A1115G	p.N372S	.	.	155	12	183	0	.	69
RYR3	6263	broad.mit.edu;bcgsc.ca	37	15	34080629	34080629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RYR3	NM_001243996	exon67	c.C9800A	p.P3267H	.	.	126	8	134	1	.	520
SCAF1	58506	hgsc.bcm.edu;mdanderson.org	37	19	50156751	50156751	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCAF1	NM_021228	exon7	c.A3105G	p.E1035E	.	.	19	6	23	0	.	68
SCN1A	6323	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166852533	166852533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCN1A	NM_001165963	exon24	c.C4571T	p.P1524L	.	.	50	5	50	1	.	147
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166852534	166852534	+	Missense_Mutation	SNP	G	G	T	rs143088184		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCN1A	NM_001165963	exon24	c.C4570A	p.P1524T	.	.	50	5	50	0	G|1.000;T|0.000	147
SCNN1G	6340	broad.mit.edu	37	16	23200964	23200964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCNN1G	NM_001039	exon3	c.A590G	p.E197G	.	.	277	7	236	2	.	158
SEMA3A	10371	broad.mit.edu;bcgsc.ca	37	7	83823875	83823875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SEMA3A	NM_006080	exon1	c.C28G	p.L10V	.	.	170	6	136	1	.	156
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61325772	61325772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SERPINB3	NM_006919	exon5	c.C444A	p.N148K	.	.	103	12	105	0	.	228
SIAE	54414	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	124517357	124517357	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SIAE	NM_170601	exon7	c.T870C	p.N290N	.	.	116	17	100	0	.	90
SIM2	6493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38117042	38117042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SIM2	NM_005069	exon10	c.T1181C	p.F394S	.	.	82	8	80	2	.	90
SLC5A10	125206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18872410	18872410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SLC5A10	NM_001042450	exon6	c.T499G	p.W167G	.	.	156	11	209	0	.	91
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	118548101	118548101	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG17	NM_206996	exon32	c.A4712T	p.Y1571F	.	.	103	8	104	0	.	158
SPAG8	26206	bcgsc.ca;mdanderson.org	37	9	35810501	35810501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG8	NM_001039592	exon5	c.G1135A	p.E379K	.	.	146	13	190	1	.	91
SPAG9	9043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	49048126	49048126	+	Silent	SNP	C	C	A	rs112947211	bycluster;byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG9	NM_001130528	exon29	c.G3792T	p.T1264T	.	.	143	17	198	0	C|0.999;T|0.001	659
SPATA4	132851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177113883	177113883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPATA4	NM_144644	exon4	c.T583G	p.S195A	.	.	83	9	100	0	.	90
SPRR2B	6701	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153043186	153043186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPRR2B	NM_001017418	exon3	c.C130T	p.P44S	.	.	207	24	216	0	.	68
SQLE	6713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126030343	126030343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SQLE	NM_003129	exon8	c.T1247G	p.L416R	.	.	49	7	40	0	.	523
SRD5A1P1	6719	bcgsc.ca	37	X	138529718	138529718	+	RNA	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	.	.	.	22	7	24	0	.	.
STAG1	10274	ucsc.edu	37	3	136261001	136261001	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	STAG1	NM_005862	exon6	c.A431T	p.N144I	.	.	36	4	26	0	.	228
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152638095	152638095	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SYNE1	NM_182961	exon87	c.T16599C	p.N5533N	.	.	63	7	56	0	.	607
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119947795	119947795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SYNPO2	NM_001128934	exon3	c.A271G	p.I91V	.	.	87	9	95	0	.	92
TAF1D	79101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93472409	93472409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TAF1D	NM_024116	exon2	c.A62G	p.N21S	.	.	80	15	73	0	.	90
TAGAP	117289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159457832	159457832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TAGAP	NM_054114	exon10	c.G1223A	p.R408Q	.	.	146	17	157	0	.	91
TEX13A	56157	hgsc.bcm.edu	37	X	104464383	104464383	+	Silent	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TEX13A	NM_031274	exon3	c.C495A	p.A165A	.	.	7	4	15	0	.	132
THBS3	7059	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155168361	155168361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	THBS3	NM_007112	exon17	c.A1913T	p.N638I	.	.	266	20	303	1	.	222
THSD4	79875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	71548960	71548960	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	THSD4	NM_024817	exon5	c.A921G	p.P307P	.	.	106	11	115	0	.	92
TLE4	7091	broad.mit.edu	37	9	82336795	82336795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TLE4	NM_007005	exon17	c.A1978T	p.T660S	.	.	102	5	79	2	.	524
TNR	7143	broad.mit.edu;bcgsc.ca	37	1	175331876	175331876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TNR	NM_003285	exon14	c.C2777T	p.A926V	.	.	382	12	310	0	.	324
TTC17	55761	broad.mit.edu	37	11	43411288	43411288	+	Silent	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TTC17	NM_018259	exon3	c.A336T	p.P112P	.	.	172	5	190	0	.	95
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	.	.	388	40	384	32	G|0.998;A|0.002	90
TXK	7294	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48116411	48116411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TXK	NM_003328	exon2	c.A25G	p.I9V	.	.	106	20	105	1	.	521
UBE2K	3093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39780009	39780009	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UBE2K	NM_005339	exon7	c.A558G	p.K186K	.	.	86	6	63	0	.	23
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43318859	43318859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UBR1	NM_174916	exon23	c.A2435C	p.K812T	.	.	52	12	47	0	.	91
UCP3	7352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73717271	73717271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UCP3	NM_003356	exon3	c.A280T	p.I94F	.	.	89	9	115	1	.	91
UFD1L	7353	ucsc.edu	37	22	19452754	19452754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UFD1L	NM_005659	exon6	c.G466T	p.D156Y	.	.	104	4	125	0	.	227
USP24	23358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	55624627	55624627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	USP24	NM_015306	exon10	c.A1151G	p.D384G	.	.	251	14	254	1	.	521
VRK3	51231	bcgsc.ca	37	19	50484234	50484234	+	Silent	SNP	G	G	A	rs16981617	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	VRK3	NM_016440	exon13	c.C1254T	p.C418C	.	.	108	5	89	0	G|0.883;A|0.117	359
WDR33	55339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128522413	128522413	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	WDR33	NM_001006623	exon6	c.T615C	p.I205I	.	.	239	13	194	1	.	90
WDR87	83889	broad.mit.edu	37	19	38376997	38376997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_031951	exon6	c.G7197C	p.E2399D	.	.	41	4	53	0	.	.
WNK4	65266	broad.mit.edu;bcgsc.ca	37	17	40945608	40945615	+	In_Frame_Del	DEL	AGGTATAT	AGGTATAT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	AGGTATAT	AGGTATAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	WNK4	NM_032387	exon12	c.2158_2163del	p.720_721del	.	.	159	9	165	0	.	336
ZDBF2	57683	broad.mit.edu	37	2	207174580	207174580	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZDBF2	NM_020923	exon5	c.A5328G	p.V1776V	.	.	114	5	137	1	.	3
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207175044	207175044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZDBF2	NM_020923	exon5	c.G5792T	p.G1931V	.	.	251	31	217	0	.	3
ZFHX3	463	hgsc.bcm.edu	37	16	72822013	72822033	+	In_Frame_Del	DEL	GCTGCTGCTGCTGTAGTTGCC	GCTGCTGCTGCTGTAGTTGCC	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	GCTGCTGCTGCTGTAGTTGCC	GCTGCTGCTGCTGTAGTTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZFHX3	NM_006885	exon10	c.10142_10162del	p.3381_3388del	.	.	25	14	14	0	.	72
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36884090	36884090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZFP82	NM_133466	exon5	c.T1152G	p.H384Q	.	.	114	11	101	0	.	91
ZMYND12	84217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42921631	42921631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZMYND12	NM_032257	exon1	c.G38A	p.R13H	.	.	56	10	52	0	.	91
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	24309164	24309164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF254	NM_203282	exon4	c.A362T	p.Q121L	.	.	120	6	91	0	.	90
ZNF33A	7581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38345268	38345268	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF33A	NM_006954	exon5	c.A2216T	p.H739L	.	.	123	21	131	0	.	93
ZNF485	220992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	44112662	44112662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF485	NM_145312	exon5	c.T1171C	p.F391L	.	.	90	7	91	0	.	90
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71629093	71629093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF638	NM_014497	exon16	c.A2705G	p.E902G	.	.	49	9	62	0	.	94
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31088438	31088438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF646	NM_014699	exon2	c.A793G	p.I265V	.	.	151	16	179	0	.	153
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	57528611	57528611	+	Nonsense_Mutation	SNP	T	T	A	rs202240678	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF716	NM_001159279	exon4	c.T444A	p.C148X	.	.	159	21	154	0	T|0.995;A|0.005	24
ZSWIM6	57688	broad.mit.edu	37	5	60839701	60839701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_020928	exon14	c.A3205T	p.I1069F	.	.	194	7	158	0	.	.
LRRC41	10489	broad.mit.edu;bcgsc.ca	37	1	46744688	46744689	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	p.A763N	.	.	.	.	.	.	.	
