Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	33891885	33891885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ADAMTS12	NM_030955	exon1	c.A77G	p.Y26C	.	.	361	22	354	0	.	232
ADCY2	108	hgsc.bcm.edu;bcgsc.ca	37	5	7396525	7396525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ADCY2	NM_020546	exon1	c.G116A	p.C39Y	.	.	62	4	94	0	.	97
AGMAT	79814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15909713	15909713	+	Silent	SNP	T	T	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	AGMAT	NM_024758	exon2	c.A450C	p.A150A	.	.	63	9	53	0	.	91
ALDH3B2	222	hgsc.bcm.edu	37	11	67432799	67432799	+	Silent	SNP	G	G	A	rs80147122	bycluster;by1000genomes	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ALDH3B2	NM_001031615	exon7	c.C663T	p.R221R	.	.	38	6	152	0	.	226
ALG1L9P	285407	broad.mit.edu	37	11	71507261	71507261	+	RNA	SNP	A	A	G	rs111708284		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	.	.	.	.	.	.	52	3	58	2	A|0.832;G|0.168	.
ARHGEF15	22899	ucsc.edu;bcgsc.ca	37	17	8215882	8215882	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ARHGEF15	NM_025014	exon2	c.C525T	p.L175L	.	.	25	4	34	0	.	230
ASIC2	40	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	32483120	32483120	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_001094	exon1	c.G432A	p.K144K	.	.	180	14	135	0	.	.
ASPSCR1	79058	bcgsc.ca	37	17	79970118	79970118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ASPSCR1	NM_001251888	exon12	c.C1312T	p.P438S	.	.	108	5	92	0	.	877
ATN1	1822	hgsc.bcm.edu	37	12	7045939	7045939	+	Missense_Mutation	SNP	T	T	G	rs146578563	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ATN1	NM_001007026	exon5	c.T1509G	p.H503Q	.	.	116	11	153	0	C|0.001;G|0.000;T|0.999	139
AXL	558	broad.mit.edu;bcgsc.ca	37	19	41743920	41743920	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	AXL	NM_021913	exon7	c.G855A	p.S285S	.	.	154	6	173	0	.	1403
BOD1L1	259282	ucsc.edu;bcgsc.ca	37	4	13606024	13606024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_148894	exon10	c.G2500A	p.E834K	.	.	40	4	40	0	.	.
CA4	762	hgsc.bcm.edu;broad.mit.edu	37	17	58235740	58235740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CA4	NM_000717	exon7	c.C677T	p.T226I	.	.	130	8	103	0	.	226
CLCN5	1184	broad.mit.edu;bcgsc.ca	37	X	49840450	49840450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CLCN5	NM_001127898	exon7	c.G416A	p.G139D	.	.	221	8	171	0	.	132
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	205041630	205041630	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CNTN2	NM_005076	exon21	c.C2751A	p.G917G	.	.	80	8	72	0	.	91
CREBBP	1387	broad.mit.edu;bcgsc.ca	37	16	3817806	3817806	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CREBBP	NM_004380	exon16	c.G3165A	p.V1055V	.	.	104	6	83	0	.	1807
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2949136	2949136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CSMD1	NM_033225	exon48	c.C7187T	p.T2396I	.	.	32	4	29	0	.	86
CXorf58	254158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	23934445	23934445	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CXorf58	NM_152761	exon5	c.G423A	p.K141K	.	.	152	9	143	0	.	130
DCTN2	10540	broad.mit.edu;ucsc.edu	37	12	57924522	57924522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DCTN2	NM_001261412	exon14	c.G1162A	p.E388K	.	.	197	6	198	0	.	23
DICER1	23405	broad.mit.edu	37	14	95569849	95569849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DICER1	NM_030621	exon22	c.G3884A	p.G1295E	.	.	140	4	104	0	.	961
DMD	1756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	31525469	31525469	+	Silent	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DMD	NM_004006	exon56	c.C8319A	p.V2773V	.	.	166	8	133	0	.	265
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76451796	76451796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DNAH17	NM_173628	exon63	c.G10100A	p.G3367D	.	.	187	8	198	0	.	142
FAM160B1	57700	broad.mit.edu	37	10	116602965	116602965	+	Silent	SNP	T	T	C	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	FAM160B1	NM_020940	exon6	c.T796C	p.L266L	.	.	78	3	85	0	.	91
FAM179A	165186	broad.mit.edu	37	2	29237324	29237324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	FAM179A	NM_199280	exon8	c.C941T	p.P314L	.	.	128	4	99	0	.	26
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	FRG1B	.	.	.	.	.	.	664	33	586	15	.	22
FRZB	2487	broad.mit.edu	37	2	183703307	183703307	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	FRZB	NM_001463	exon4	c.G627A	p.K209K	.	.	127	5	128	0	.	948
GLI2	2736	bcgsc.ca	37	2	121747406	121747406	+	Missense_Mutation	SNP	G	G	A	rs12711538	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	GLI2	NM_005270	exon13	c.G3916A	p.D1306N	.	.	242	8	236	2	G|0.360;A|0.640	954
GTF2IRD1P1	729156	broad.mit.edu	37	7	66304562	66304562	+	RNA	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	.	.	.	.	.	.	51	3	37	0	.	.
HEATR3	55027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50106573	50106573	+	Silent	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	HEATR3	NM_182922	exon5	c.G570T	p.V190V	.	.	82	5	130	0	.	92
IFT88	8100	broad.mit.edu	37	13	21265261	21265261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	IFT88	NM_175605	exon28	c.G2449A	p.D817N	.	.	157	4	147	0	.	91
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44223141	44223141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	IRGC	NM_019612	exon2	c.G431A	p.R144H	.	.	18	9	42	0	.	70
KIAA0930	23313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	45595761	45595761	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	KIAA0930	NM_015264	exon8	c.C1023T	p.D341D	.	.	74	4	69	0	.	90
KIF4A	24137	ucsc.edu	37	X	69561729	69561729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	KIF4A	NM_012310	exon11	c.G1214T	p.G405V	.	.	232	2	254	0	.	134
KLF13	51621	bcgsc.ca	37	15	31664259	31664259	+	Silent	SNP	C	C	T	rs144180630	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	KLF13	NM_015995	exon2	c.C624T	p.F208F	.	.	54	4	137	1	C|0.999;T|0.001	90
KRTAP4-9	100132386	broad.mit.edu	37	17	39261693	39261693	+	Missense_Mutation	SNP	A	A	T	rs113059833		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_001146041	exon1	c.A53T	p.D18V	.	.	56	10	62	2	T|1.000;|0.000	.
L3MBTL4	91133	hgsc.bcm.edu	37	18	6243330	6243330	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	L3MBTL4	NM_173464	exon7	c.G423A	p.W141X	.	.	118	5	109	0	.	93
LOC100132247	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	22545898	22545898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_001135865	exon7	c.A1594C	p.T532P	.	.	47	8	43	0	.	.
LOC642236	0	bcgsc.ca	37	9	68433564	68433564	+	RNA	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	.	.	.	.	.	.	245	11	283	8	.	.
LRP1B	53353	broad.mit.edu	37	2	140995842	140995842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	LRP1B	NM_018557	exon89	c.C13439T	p.P4480L	.	.	97	4	120	0	.	311
LRRC37A4P	55073	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	.	.	.	.	.	.	161	5	210	2	G|1.000;|0.000	.
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	74507289	74507289	+	Silent	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	LRRIQ3	NM_001105659	exon7	c.T1326A	p.V442V	.	.	42	4	44	0	.	92
LRRK2	120892	ucsc.edu;bcgsc.ca	37	12	40715938	40715938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	LRRK2	NM_198578	exon36	c.C5272T	p.H1758Y	.	.	39	4	32	0	.	533
MIR1256	100302155	bcgsc.ca	37	X	103294496	103294496	+	RNA	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	.	.	.	.	.	.	256	12	197	0	.	.
MUC16	94025	broad.mit.edu	37	19	9024146	9024146	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	MUC16	NM_024690	exon18	c.T37126A	p.S12376T	.	.	87	4	91	0	.	566
MUC16	94025	broad.mit.edu	37	19	9064403	9064403	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	MUC16	NM_024690	exon3	c.G23043A	p.V7681V	.	.	110	4	118	0	.	566
MUC17	140453	ucsc.edu;bcgsc.ca	37	7	100681266	100681266	+	Missense_Mutation	SNP	C	C	A	rs142126972	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	MUC17	NM_001040105	exon3	c.C6569A	p.T2190K	.	.	154	26	128	15	C|0.995;A|0.005	95
MUC17	140453	ucsc.edu;bcgsc.ca	37	7	100681293	100681293	+	Missense_Mutation	SNP	G	G	A	rs141217694	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	MUC17	NM_001040105	exon3	c.G6596A	p.R2199H	.	.	134	22	110	8	G|0.997;A|0.003	95
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47390748	47390748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	MYO5B	NM_001080467	exon28	c.G3606T	p.R1202S	.	.	47	4	47	0	.	72
NEIL1	79661	ucsc.edu	37	15	75646086	75646086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	NEIL1	NM_001256552	exon6	c.A983G	p.K328R	.	.	127	1	83	0	.	659
NIPBL	25836	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37016248	37016248	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	NIPBL	NM_015384	exon23	c.C4752T	p.L1584L	.	.	81	12	75	1	.	293
ODF1	4956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	103572783	103572783	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ODF1	NM_024410	exon2	c.C424A	p.R142R	.	.	245	13	192	0	.	70
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29395394	29395394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR11A1	NM_013937	exon1	c.G25A	p.E9K	.	.	89	6	68	0	.	23
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4967860	4967860	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR51A4	NM_001005329	exon1	c.G471T	p.L157L	.	.	237	13	206	0	.	71
OR8B4	283162	hgsc.bcm.edu;broad.mit.edu	37	11	124294075	124294075	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR8B4	NM_001005196	exon1	c.G693A	p.E231E	.	.	98	4	92	0	.	69
PIM3	415116	ucsc.edu	37	22	50356702	50356702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	PIM3	NM_001001852	exon6	c.G908A	p.S303N	.	.	18	1	56	0	.	521
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132193186	132193186	+	Silent	SNP	G	G	A	rs139250180	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	PLXNA4,NS,carcinoma,-2	PLXNA4	NM_001105543	exon2	c.C267T	p.D89D	.	.	77	8	87	0	G|0.999;A|0.001	91
POM121L2	94026	broad.mit.edu	37	6	27278020	27278020	+	Missense_Mutation	SNP	C	C	A	rs16897515	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_033482	exon1	c.G1930T	p.G644C	.	.	163	3	123	0	C|0.850;A|0.150	.
PPFIA3	8541	broad.mit.edu	37	19	49637086	49637086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	PPFIA3	NM_003660	exon10	c.C1195T	p.L399F	.	.	179	4	218	0	.	226
PPP4R1	9989	broad.mit.edu;ucsc.edu	37	18	9559445	9559445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	PPP4R1	NM_001042388	exon14	c.C2000T	p.T667M	.	.	138	4	122	0	.	227
PRODH2	58510	ucsc.edu	37	19	36303372	36303372	+	Silent	SNP	A	A	C	rs201837689	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	PRODH2	NM_021232	exon3	c.T489G	p.G163G	.	.	70	4	152	7	A|0.962;C|0.038	92
PVRL2	5819	ucsc.edu	37	19	45389401	45389401	+	Silent	SNP	C	C	T	rs200956365	alternate_allele	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	PVRL2	NM_001042724	exon8	c.C1272T	p.L424L	.	.	53	2	80	1	C|0.999;G|0.000	90
RHBDD2	57414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75511359	75511359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RHBDD2	NM_001040456	exon2	c.G391T	p.D131Y	.	.	258	21	225	0	.	90
RPS6KA3	6197	ucsc.edu	37	X	20187591	20187591	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RPS6KA3	NM_004586	exon16	c.A1372T	p.R458X	.	.	38	2	56	0	.	1504
RPS6KA3	6197	ucsc.edu	37	X	20190902	20190902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RPS6KA3	NM_004586	exon15	c.T1315C	p.C439R	.	.	150	2	170	0	.	1504
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237947093	237947093	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RYR2	NM_001035	exon90	c.G12081A	p.T4027T	.	.	135	8	137	1	.	158
SEC13	6396	broad.mit.edu	37	3	10347279	10347279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SEC13	NM_183352	exon6	c.C548T	p.A183V	.	.	167	4	131	0	.	91
SLC13A4	26266	broad.mit.edu;bcgsc.ca	37	7	135376053	135376053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SLC13A4	NM_012450	exon13	c.C1339A	p.L447M	.	.	138	6	138	0	.	90
SLC35G5	83650	bcgsc.ca	37	8	11188922	11188922	+	Missense_Mutation	SNP	T	T	C	rs76944947	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_054028	exon1	c.T307C	p.W103R	.	.	166	15	152	3	T|0.975;C|0.025	.
SLC6A16	28968	broad.mit.edu	37	19	49794017	49794017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SLC6A16	NM_014037	exon11	c.G1786A	p.A596T	.	.	115	4	121	0	.	94
SMPDL3B	27293	bcgsc.ca	37	1	28282292	28282292	+	Missense_Mutation	SNP	T	T	C	rs3813803	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SMPDL3B	NM_001009568	exon6	c.T788C	p.V263A	.	.	151	8	147	2	T|0.782;C|0.218	93
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu	37	18	8824928	8824928	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_015210	exon15	c.G3420A	p.R1140R	.	.	63	4	76	0	.	.
SPRR3	6707	ucsc.edu	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	126	68	117	2	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	129	34	149	2	A|0.010;C|0.001;T|0.988	45
SRC	6714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36031248	36031248	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SRC	NM_005417	exon13	c.C1367G	p.T456S	.	.	138	12	124	0	.	2731
SYNE1	23345	hgsc.bcm.edu	37	6	152536122	152536122	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SYNE1	NM_182961	exon122	c.T22265A	p.L7422X	.	.	75	4	81	0	.	607
TBC1D3G	654341	mdanderson.org	37	17	34797666	34797666	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	TBC1D3G	NM_001040282	exon14	c.C1470T	p.A490A	.	.	28	6	24	1	.	46
TIAM1	7074	hgsc.bcm.edu	37	21	32508300	32508300	+	Silent	SNP	C	C	T	rs184598278		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	TIAM1	NM_003253	exon24	c.G3834A	p.P1278P	.	.	92	4	90	0	C|0.999;T|0.000	724
TICAM1	148022	ucsc.edu	37	19	4816380	4816380	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	TICAM1	NM_182919	exon2	c.C2010T	p.P670P	.	.	42	4	46	0	.	153
TMEM229A	730130	broad.mit.edu;bcgsc.ca	37	7	123672068	123672068	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_001136002	exon1	c.G990A	p.T330T	.	.	115	5	87	0	.	.
TMOD1	7111	hgsc.bcm.edu	37	9	100325046	100325046	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	TMOD1	NM_001166116	exon5	c.C430T	p.Q144X	.	.	113	6	106	0	.	90
TMPRSS13	84000	broad.mit.edu	37	11	117784605	117784605	+	Silent	SNP	G	G	A	rs200658665	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	TMPRSS13	NM_001206790	exon5	c.C696T	p.D232D	.	.	88	3	70	0	G|0.996;A|0.004	91
TTN	7273	broad.mit.edu	37	2	179584914	179584914	+	Missense_Mutation	SNP	C	C	G	rs201420077		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	TTN	NM_001267550	exon81	c.G23455C	p.E7819Q	.	.	121	5	121	0	.	636
TXNRD2	10587	bcgsc.ca	37	22	19867771	19867771	+	Silent	SNP	C	C	T	rs1139795	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	TXNRD2	.	.	.	.	.	.	93	5	143	0	C|0.782;T|0.218	92
VWA3A	146177	broad.mit.edu;bcgsc.ca	37	16	22152958	22152958	+	Silent	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	VWA3A	NM_173615	exon24	c.A2439T	p.S813S	.	.	164	14	166	2	.	1
ZMYM3	9203	bcgsc.ca	37	X	70472676	70472683	+	Frame_Shift_Del	DEL	AAGGCTCT	AAGGCTCT	-	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	AAGGCTCT	AAGGCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ZMYM3	NM_005096	exon2	c.423_430del	p.141_144del	.	.	186	4	164	0	.	131
ZNF862	643641	hgsc.bcm.edu	37	7	149558968	149558968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ZNF862	NM_001099220	exon7	c.T2719A	p.L907M	.	.	101	5	103	0	.	69
