Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AHNAK2	113146	broad.mit.edu	37	14	105406110	105406110	+	Silent	SNP	A	A	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	AHNAK2	NM_138420	exon7	c.T15678G	p.G5226G	.	.	33	8	45	6	.	47
AR	367	broad.mit.edu;mdanderson.org	37	X	66766359	66766359	+	Silent	SNP	C	C	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	AR	NM_000044	exon1	c.C1371T	p.G457G	.	.	14	4	9	0	.	661
ARMC3	219681	broad.mit.edu	37	10	23297852	23297852	+	Silent	SNP	A	A	G	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	ARMC3	NM_173081	exon16	c.A2037G	p.K679K	.	.	274	5	312	0	.	90
ARNTL2	56938	broad.mit.edu	37	12	27573334	27573334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	ARNTL2	NM_020183	exon17	c.G1780A	p.G594S	.	.	97	4	93	0	.	92
C11orf95	65998	mdanderson.org	37	11	63533337	63533337	+	Silent	SNP	C	C	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_001144936	exon2	c.G579A	p.E193E	.	.	22	3	24	0	.	.
CACNA1C	775	broad.mit.edu	37	12	2613668	2613668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	CACNA1C	NM_001167623	exon8	c.T1180C	p.F394L	.	.	192	4	167	1	.	34
COL27A1	85301	broad.mit.edu	37	9	116931036	116931036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	COL27A1	NM_032888	exon3	c.C1201G	p.L401V	.	.	106	3	87	0	.	94
CSRP3	8048	broad.mit.edu	37	11	19213974	19213974	+	Missense_Mutation	SNP	C	C	T	rs45531937	bycluster	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	CSRP3	NM_003476	exon3	c.G22A	p.A8T	.	.	58	4	75	0	C|1.000;T|0.000	90
DRD4	1815	hgsc.bcm.edu	37	11	640119	640119	+	Silent	SNP	C	C	T	rs762502		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	DRD4	NM_000797	exon3	c.C870T	p.C290C	.	.	4	4	0	0	C|0.320;T|0.680	90
DSPP	1834	mdanderson.org	37	4	88537294	88537294	+	Silent	SNP	T	T	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	DSPP	NM_014208	exon5	c.T3480C	p.S1160S	.	.	226	26	256	1	.	90
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	EEF1B2	NM_021121	exon3	c.A127G	p.S43G	.	.	125	6	137	0	.	227
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	EEF1B2	NM_021121	exon3	c.G135A	p.P45P	.	.	134	5	132	0	.	227
ESPN	83715	broad.mit.edu	37	1	6505934	6505934	+	Missense_Mutation	SNP	A	A	G	rs145306517	byfrequency	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	ESPN	NM_031475	exon7	c.A1403G	p.D468G	.	.	108	4	99	0	A|0.999;G|0.001	514
FAM186A	121006	broad.mit.edu	37	12	50746514	50746514	+	Missense_Mutation	SNP	G	G	C	rs71466905		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	FAM186A	NM_001145475	exon4	c.C4101G	p.H1367Q	.	.	130	5	125	3	G|0.500;C|0.500	68
FAM186A	121006	broad.mit.edu	37	12	50746672	50746672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	FAM186A	NM_001145475	exon4	c.T3943C	p.F1315L	.	.	100	10	87	2	.	68
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	FRG1B	.	.	.	.	.	.	778	27	744	18	.	22
GADL1	339896	broad.mit.edu	37	3	30827880	30827880	+	Silent	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	GADL1	NM_207359	exon13	c.C1269A	p.I423I	.	.	110	5	86	0	.	90
GRID2IP	392862	hgsc.bcm.edu	37	7	6590670	6590670	+	Missense_Mutation	SNP	C	C	T	rs9690195	byfrequency	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_001145118	exon1	c.G398A	p.R133H	.	.	4	4	0	0	C|0.678;T|0.322	.
GTF3C3	9330	broad.mit.edu	37	2	197657782	197657782	+	Silent	SNP	C	C	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	GTF3C3	NM_001206774	exon3	c.G309A	p.E103E	.	.	234	8	227	0	.	97
HIVEP3	59269	broad.mit.edu	37	1	42050219	42050219	+	Missense_Mutation	SNP	G	G	T	rs201845023	alternate_allele	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	HIVEP3	NM_024503	exon4	c.C250A	p.P84T	.	.	72	5	54	1	G|0.999;A|0.001	157
HLX	3142	hgsc.bcm.edu	37	1	221053601	221053602	+	In_Frame_Ins	INS	-	-	CAGCAACAGCCGCCG	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	HLX	NM_021958	exon1	c.402_403insCAGCAACAGCCGCCG	p.Q134delinsQQQQPP	.	.	86	15	85	0	.	70
INSRR	3645	broad.mit.edu	37	1	156818833	156818833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	INSRR	NM_014215	exon7	c.C1451A	p.T484N	.	.	88	3	64	1	.	1403
ISLR2	57611	broad.mit.edu	37	15	74425231	74425231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	ISLR2	NM_001130138	exon4	c.C136T	p.P46S	.	.	62	4	36	0	.	90
KANK1	23189	broad.mit.edu;bcgsc.ca	37	9	732477	732477	+	Silent	SNP	G	G	A	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	KANK1	NM_001256876	exon10	c.G3105A	p.E1035E	.	.	133	5	96	0	.	517
KCNC3	3748	hgsc.bcm.edu	37	19	50832152	50832152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	KCNC3	NM_004977	exon1	c.A188G	p.D63G	.	.	5	5	0	0	.	91
KDM6A	7403	broad.mit.edu	37	X	44942771	44942771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	KDM6A	NM_021140	exon23	c.T3351A	p.N1117K	.	.	113	6	93	0	.	2748
KIF1A	547	broad.mit.edu	37	2	241696929	241696929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	KIF1A	NM_001244008	exon27	c.A2665C	p.T889P	.	.	137	26	128	15	.	91
KLF14	136259	hgsc.bcm.edu	37	7	130418720	130418720	+	Missense_Mutation	SNP	A	A	C	rs111359117		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	KLF14	NM_138693	exon1	c.T141G	p.H47Q	.	.	8	8	0	0	.	90
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_033059	exon1	c.C481G	p.L161V	.	.	65	5	69	0	G|0.500;C|0.500	.
KRTAP4-11	653240	broad.mit.edu	37	17	39274291	39274291	+	Missense_Mutation	SNP	T	T	C	rs200214744		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_033059	exon1	c.A277G	p.M93V	.	.	36	4	38	1	.	.
LOC202181	0	broad.mit.edu	37	5	177099071	177099071	+	RNA	SNP	A	A	G	rs75304783		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	.	.	.	.	.	.	24	6	19	0	G|1.000;|0.000	.
LOC283922	0	broad.mit.edu	37	16	74372644	74372644	+	RNA	SNP	A	A	G	rs2549260	bycluster	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	.	.	.	.	.	.	66	7	51	1	.	.
LRP6	4040	broad.mit.edu	37	12	12312049	12312049	+	Silent	SNP	A	A	G	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	LRP6	NM_002336	exon12	c.T2505C	p.P835P	.	.	117	4	109	0	.	661
MEIS1	4211	broad.mit.edu	37	2	66667033	66667033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	MEIS1	NM_002398	exon3	c.A298C	p.T100P	.	.	107	12	101	5	.	226
MLL2	8085	broad.mit.edu	37	12	49427679	49427679	+	Silent	SNP	C	C	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	MLL2	NM_003482	exon39	c.G10809A	p.Q3603Q	.	.	24	3	25	0	.	612
MOSPD2	158747	broad.mit.edu;bcgsc.ca	37	X	14932692	14932692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	MOSPD2	NM_152581	exon11	c.A1060G	p.N354D	.	.	413	9	381	0	.	130
MUC21	394263	broad.mit.edu	37	6	30954806	30954806	+	Missense_Mutation	SNP	T	T	C	rs9262370	byfrequency	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	MUC21	NM_001010909	exon2	c.T854C	p.V285A	.	.	99	10	94	5	T|1.000;|0.000	92
MUC2	4583	broad.mit.edu	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	MUC2	NM_002457	exon30	c.C5111T	p.T1704I	.	.	47	3	38	0	.	90
MUC4	4585	broad.mit.edu	37	3	195508982	195508982	+	Missense_Mutation	SNP	C	C	T	rs79543693	byfrequency	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	MUC4	NM_018406	exon2	c.G9469A	p.D3157N	.	.	83	4	50	1	C|0.625;T|0.375	90
MUC4	4585	broad.mit.edu	37	3	195512445	195512445	+	Silent	SNP	C	C	A	rs200972857	byfrequency	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	MUC4	NM_018406	exon2	c.G6006T	p.P2002P	.	.	160	7	109	1	C|0.988;A|0.013	90
MUC4	4585	broad.mit.edu	37	3	195513285	195513285	+	Silent	SNP	G	G	T	rs200293322	byfrequency	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	MUC4	NM_018406	exon2	c.C5166A	p.S1722S	.	.	251	6	203	1	G|0.988;T|0.013	90
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	.	.	.	.	.	.	24	3	18	0	C|0.500;T|0.500	.
NCOR2	9612	broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	.	.	22	3	11	0	.	229
OR4K2	390431	ucsc.edu	37	14	20345346	20345346	+	Missense_Mutation	SNP	A	A	T	rs12883767	byfrequency	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	OR4K2	NM_001005501	exon1	c.A920T	p.N307I	.	.	11	5	14	0	A|0.666;T|0.334	72
PARP4	143	ucsc.edu;bcgsc.ca	37	13	25058867	25058867	+	Missense_Mutation	SNP	C	C	T	rs201518768		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	PARP4	NM_006437	exon12	c.G1372A	p.V458I	.	.	119	17	95	1	.	94
PCDHGB4	8641	hgsc.bcm.edu	37	5	140769325	140769325	+	Missense_Mutation	SNP	G	G	A	rs201153580	alternate_allele	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_032098	exon1	c.G1874A	p.R625H	.	.	55	4	43	0	.	.
PEX5L	51555	broad.mit.edu	37	3	179616029	179616029	+	Silent	SNP	T	T	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	PEX5L	NM_016559	exon3	c.A99G	p.K33K	.	.	72	6	67	0	.	156
PKD1L3	342372	bcgsc.ca	37	16	72003796	72003796	+	RNA	SNP	T	T	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	PKD1L3	.	.	.	.	.	.	110	5	100	0	.	68
PMFBP1	83449	broad.mit.edu	37	16	72153872	72153872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	PMFBP1	NM_031293	exon20	c.C2885A	p.P962Q	.	.	77	3	94	0	.	92
PPP1R26	9858	broad.mit.edu	37	9	138377232	138377232	+	Silent	SNP	T	T	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_014811	exon4	c.T876C	p.P292P	.	.	110	5	95	1	.	.
PSEN1	5663	broad.mit.edu	37	14	73683953	73683953	+	Splice_Site	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	PSEN1	NM_007318	exon11	c.1236+1G>T	.	.	.	84	3	89	0	.	659
RANBP2	5903	broad.mit.edu	37	2	109368077	109368077	+	Missense_Mutation	SNP	C	C	T	rs2912841		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	RANBP2	NM_006267	exon11	c.C1549T	p.L517F	.	.	369	6	332	2	.	675
RPL3L	6123	broad.mit.edu	37	16	1997361	1997361	+	Silent	SNP	C	C	A	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	RPL3L	NM_005061	exon5	c.G522T	p.R174R	.	.	21	3	28	0	.	90
RPTN	126638	broad.mit.edu	37	1	152127999	152127999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	RPTN	NM_001122965	exon3	c.C1576A	p.P526T	.	.	133	6	117	2	.	68
SLC22A4	6583	broad.mit.edu	37	5	131647904	131647904	+	Silent	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	SLC22A4	NM_003059	exon2	c.G444T	p.L148L	.	.	56	3	38	0	.	90
SSC5D	284297	bcgsc.ca	37	19	56029381	56029381	+	Silent	SNP	T	T	C	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_001144950	exon14	c.T3738C	p.H1246H	.	.	187	33	185	21	.	.
SULT6B1	391365	broad.mit.edu	37	2	37415593	37415593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	SULT6B1	NM_001032377	exon1	c.C77A	p.P26Q	.	.	127	4	108	1	.	91
SUPT16H	11198	hgsc.bcm.edu	37	14	21820872	21820872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	SUPT16H	NM_007192	exon26	c.C3104A	p.S1035Y	.	.	72	5	56	0	.	90
SYT10	341359	broad.mit.edu	37	12	33559866	33559866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	SYT10	NM_198992	exon3	c.G935A	p.R312Q	.	.	157	4	161	0	.	92
TARP	0	broad.mit.edu	37	7	38304986	38304986	+	Missense_Mutation	SNP	C	C	T	rs187117264	by1000genomes	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_001003806	exon2	c.G109A	p.V37I	.	.	97	6	106	2	C|0.997;T|0.003	.
TAS2R30	259293	bcgsc.ca	37	12	11285909	11285909	+	Missense_Mutation	SNP	G	G	C	rs78329184		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	.	NM_001097643	exon1	c.C935G	p.T312R	.	.	152	11	121	3	.	.
TBX2	6909	broad.mit.edu;ucsc.edu	37	17	59479224	59479224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	TBX2	NM_005994	exon2	c.G575T	p.S192I	.	.	38	7	49	0	.	226
TGIF1	7050	broad.mit.edu	37	18	3457843	3457843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	TGIF1	NM_170695	exon3	c.G1111T	p.D371Y	.	.	24	4	29	0	.	227
TGIF2LX	90316	broad.mit.edu	37	X	89177659	89177659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	TGIF2LX	NM_138960	exon2	c.A575G	p.K192R	.	.	168	3	135	0	.	92
TRIM52	84851	hgsc.bcm.edu	37	5	180687440	180687440	+	Silent	SNP	T	T	C	rs80005177	byfrequency	TCGA-ED-A627-01A-12D-A30V-10	TCGA-ED-A627-10B-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f59d69bf-3766-4425-a07e-7b5a15b05580	52ca40d4-025d-419f-acf2-feeca914604d	.	TRIM52	NM_032765	exon1	c.A375G	p.E125E	.	.	55	4	59	0	T|0.991;C|0.009	90
