Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA3	21	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2369767	2369767	+	Missense_Mutation	SNP	C	C	T	rs199567944		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ABCA3	NM_001089	exon8	c.G688A	p.A230T	.	.	89	12	64	1	C|0.999;T|0.001	1015
ACSM2B	348158	broad.mit.edu	37	16	20570613	20570613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ACSM2B	NM_182617	exon4	c.A334G	p.M112V	.	.	201	4	155	0	.	94
AGXT	189	ucsc.edu	37	2	241817478	241817478	+	Missense_Mutation	SNP	G	G	T	rs200819267	alternate_allele	TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	AGXT	NM_000030	exon10	c.G982T	p.A328S	.	.	30	4	23	0	G|0.999;A|0.000	90
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	86124171	86124171	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	AKAP13	NM_007200	exon7	c.C2872T	p.Q958X	.	.	56	16	61	0	.	258
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86124170	86124170	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	AKAP13	NM_007200	exon7	c.A2871T	p.G957G	.	.	56	17	59	0	.	258
ANKRD11	29123	broad.mit.edu;mdanderson.org	37	16	89346082	89346082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ANKRD11	NM_001256183	exon9	c.C6868T	p.P2290S	.	.	15	8	8	0	.	139
APBA1	320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72071267	72071267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	APBA1	NM_001163	exon8	c.C1684T	p.R562W	.	.	63	21	47	0	.	91
BAGE3	85318	broad.mit.edu;bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_182481	exon3	c.G118A	p.D40N	.	.	161	13	154	1	C|0.750;T|0.250	.
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52436639	52436640	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	BAP1	NM_004656	exon16	c.2035_2036insT	p.I679fs	.	.	67	35	84	0	.	1032
CCDC168	643677	broad.mit.edu	37	13	103385449	103385449	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_001146197	exon4	c.G17598A	p.S5866S	.	.	333	5	304	2	.	.
CDH3	1001	broad.mit.edu	37	16	68712456	68712456	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	CDH3	NM_001793	exon5	c.C443G	p.P148R	.	.	71	12	61	6	.	950
CMTM2	146225	broad.mit.edu	37	16	66621965	66621965	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	CMTM2	NM_144673	exon4	c.A690C	p.E230D	.	.	113	28	85	25	.	91
CREG2	200407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101971822	101971823	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	CREG2	NM_153836	exon3	c.618_619insA	p.N206fs	.	.	186	64	117	0	.	91
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43172740	43172740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	CUL9	NM_015089	exon23	c.C4519G	p.H1507D	.	.	51	19	36	0	.	529
CYP21A1P	1590	broad.mit.edu;ucsc.edu	37	6	31973462	31973462	+	RNA	SNP	T	T	C	rs6470	byfrequency	TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	.	.	.	.	.	.	43	5	37	2	T|0.325;C|0.675	.
DEFB116	245930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	29891217	29891217	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	DEFB116	NM_001037731	exon2	c.C107G	p.P36R	.	.	154	28	105	1	.	90
DENND1C	79958	broad.mit.edu	37	19	6477260	6477260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	DENND1C	NM_024898	exon8	c.T482C	p.I161T	.	.	28	5	24	4	.	67
DRAP1	10589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65687843	65687843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	DRAP1	NM_006442	exon4	c.T239G	p.F80C	.	.	42	9	35	0	.	90
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56495713	56495713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ERBB3	NM_001982	exon28	c.G3903T	p.Q1301H	.	.	55	25	39	0	.	1403
FAM186A	121006	broad.mit.edu	37	12	50746315	50746315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	FAM186A	NM_001145475	exon4	c.A4300C	p.T1434P	.	.	177	10	87	2	.	68
FAM92B	339145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	85133752	85133752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	FAM92B	NM_198491	exon7	c.C746T	p.A249V	.	.	37	11	28	0	.	90
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159790466	159790466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	FNIP2	NM_020840	exon13	c.C2678T	p.S893L	.	.	51	22	35	0	.	68
FYB	2533	broad.mit.edu	37	5	39137754	39137754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	FYB	NM_001243093	exon7	c.A1493G	p.K498R	.	.	425	5	224	0	.	24
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153149816	153149816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	GRIA1	NM_001258021	exon13	c.T2141C	p.M714T	.	.	104	39	68	0	.	96
HERC2P2	400322	broad.mit.edu	37	15	23283078	23283078	+	RNA	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	.	.	.	.	.	.	7	3	8	0	.	.
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8304197	8304197	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	HTRA3	NM_053044	exon7	c.G1059A	p.K353K	.	.	76	28	46	0	.	91
IFNA7	3444	broad.mit.edu	37	9	21201616	21201616	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	IFNA7	NM_021057	exon1	c.A549G	p.K183K	.	.	194	4	132	0	.	90
ILVBL	10994	broad.mit.edu	37	19	15233804	15233804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ILVBL	NM_006844	exon5	c.T503C	p.L168P	.	.	4	2	15	0	.	92
JAG2	3714	hgsc.bcm.edu;broad.mit.edu	37	14	105612177	105612177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	JAG2	NM_002226	exon23	c.A2843G	p.E948G	.	.	119	5	115	0	.	846
KCNS2	3788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99440423	99440423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	KCNS2	NM_020697	exon2	c.C216A	p.D72E	.	.	48	15	38	0	.	91
KIAA0040	9674	hgsc.bcm.edu	37	1	175129922	175129922	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_001162895	exon3	c.T228G	p.D76E	.	.	75	4	71	0	.	.
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_001162895	exon3	c.G226A	p.D76N	.	.	76	6	71	0	.	.
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	KRTAP10-6	NM_198688	exon1	c.C966T	p.S322S	.	.	108	4	69	0	.	90
LOC644669	0	broad.mit.edu	37	18	15316546	15316546	+	RNA	SNP	A	A	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	.	.	.	.	.	.	136	58	160	0	.	.
LZTS3	0	broad.mit.edu	37	20	3146749	3146749	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_014731	exon2	c.A717C	p.A239A	.	.	76	13	106	17	.	.
MAML2	84441	broad.mit.edu	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	.	.	148	5	92	0	.	850
MCM8	84515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5935894	5935894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	MCM8	NM_032485	exon5	c.T483A	p.H161Q	.	.	50	39	77	0	.	227
MLL3	58508	broad.mit.edu	37	7	151970855	151970855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	MLL3	NM_170606	exon7	c.C947G	p.T316S	.	.	158	5	198	1	.	1398
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	MLLT3	NM_004529	exon5	c.C504T	p.S168S	.	.	96	5	83	1	.	660
MLLT3	4300	hgsc.bcm.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	MLLT3	NM_004529	exon5	c.C471T	p.S157S	.	.	73	5	65	0	.	660
NBPF10	100132406	broad.mit.edu	37	1	145323667	145323667	+	Missense_Mutation	SNP	C	C	G	rs199626421		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_001039703	exon27	c.C3504G	p.D1168E	.	.	24	3	25	0	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13543	13543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	ENST00000361567	exon1	c.T1207C	p.Y403H	.	.	15	15	17	0	.	.
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51196346	51196346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	NIN	NM_020921	exon29	c.G5973T	p.R1991S	.	.	105	56	115	0	.	229
OR2L3	391192	ucsc.edu	37	1	248224595	248224595	+	Silent	SNP	C	C	T	rs76336532		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	OR2L3	NM_001004687	exon1	c.C612T	p.I204I	.	.	179	22	145	4	.	68
OR51V1	283111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5221116	5221116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	OR51V1	NM_001004760	exon1	c.G815A	p.R272H	.	.	76	31	34	0	.	69
P2RX1	5023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3806509	3806509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	P2RX1	NM_002558	exon7	c.C734A	p.T245N	.	.	25	12	36	0	.	70
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140563725	140563725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	PCDHB16	NM_020957	exon1	c.G1591A	p.V531M	.	.	35	5	27	0	.	92
PRIMA1	145270	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	94245606	94245606	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	PRIMA1	NM_178013	exon3	c.C145T	p.R49X	.	.	28	16	22	0	.	154
PSD2	84249	broad.mit.edu;bcgsc.ca	37	5	139189306	139189306	+	Missense_Mutation	SNP	C	C	T	rs142293471		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	PSD2	NM_032289	exon2	c.C281T	p.A94V	.	.	137	67	77	2	C|1.000;T|0.000	91
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4917455	4917455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	RADIL	NM_018059	exon2	c.C316A	p.Q106K	.	.	37	9	23	0	.	994
RNF121	55298	broad.mit.edu	37	11	71693927	71693927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	RNF121	NM_018320	exon4	c.G364T	p.A122S	.	.	185	4	130	0	.	226
RNF14	9604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141358344	141358344	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	RNF14	NM_001201365	exon5	c.A783G	p.Q261Q	.	.	49	8	33	0	.	226
SP110	3431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231067440	231067440	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	SP110	NM_001185015	exon10	c.A921C	p.T307T	.	.	157	20	142	0	.	155
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64437335	64437335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	SRGAP1	NM_020762	exon6	c.G781A	p.D261N	.	.	223	44	106	0	.	653
SUPT20H	55578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	37583904	37583904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_001014286	exon26	c.G2245A	p.A749T	.	.	233	10	201	0	.	.
SYTL5	94122	broad.mit.edu	37	X	37967900	37967900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	SYTL5	NM_001163334	exon12	c.G1448C	p.R483P	.	.	647	6	474	1	.	131
TAS2R43	259289	hgsc.bcm.edu	37	12	11244591	11244591	+	Missense_Mutation	SNP	C	C	A	rs73064968	byfrequency	TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	TAS2R43	NM_176884	exon1	c.G238T	p.V80L	.	.	197	8	128	0	C|0.290;A|0.710	1
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141543809	141543809	+	Missense_Mutation	SNP	G	G	A	rs199802386		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	TBC1D9	NM_015130	exon21	c.C3341T	p.P1114L	.	.	49	21	34	0	G|0.998;A|0.002	23
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135797282	135797282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	TSC1	NM_000368	exon7	c.C587T	p.P196L	.	.	46	30	60	0	.	1906
WBSCR17	64409	broad.mit.edu	37	7	70881040	70881040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	WBSCR17	NM_022479	exon4	c.C755A	p.T252N	.	.	96	5	49	0	.	96
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71757293	71757293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ZNF366	NM_152625	exon2	c.G31A	p.E11K	.	.	75	27	58	0	.	91
ZNF550	162972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58067687	58067687	+	Silent	SNP	G	G	C	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	ZNF550	.	.	.	.	.	.	84	19	61	0	.	90
ZNF778	197320	broad.mit.edu	37	16	89293980	89293980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	NM_001201407	exon7	c.G1284T	p.K428N	.	.	57	4	41	0	.	.
CTIF	9811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46163025	46163026	+	Nonsense_Mutation	DNP	CC	CC	GA	novel		TCGA-ED-A7PX-01A-51D-A34Z-10	TCGA-ED-A7PX-10A-01D-A34Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	282d9c17-9d34-43d9-952e-bf14edf7bc65	4fd69f63-3ae5-4678-8647-a7e5eabd7486	.	.	.	.	.	p.S26*	.	.	.	.	.	.	.	
