Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADSL	158	ucsc.edu;bcgsc.ca	37	22	40742604	40742604	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ADSL	NM_001123378	exon1	c.C42A	p.R14R	.	.	34	4	38	0	.	652
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	.	.	.	.	.	.	.	168	6	140	2	.	.
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33932839	33932839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	AP2B1	NM_001282	exon4	c.G259T	p.A87S	.	.	90	34	79	0	.	91
ARHGAP33	115703	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36278879	36278879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ARHGAP33	NM_052948	exon21	c.T2929C	p.Y977H	.	.	242	53	319	10	.	229
ART5	116969	broad.mit.edu	37	11	3661465	3661465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ART5	NM_001079536	exon3	c.G194A	p.R65Q	.	.	99	3	98	0	.	91
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32641025	32641025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	BIRC6	NM_016252	exon10	c.T2666C	p.F889S	.	.	184	40	144	0	.	233
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43027807	43027807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CDAN1	NM_138477	exon4	c.C844T	p.R282W	.	.	95	23	122	0	.	92
CDKN2B	1030	mdanderson.org	37	9	22009270	22009270	+	RNA	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CDKN2B	.	.	.	.	.	.	18	10	13	0	.	792
CHCHD5	84269	broad.mit.edu	37	2	113343816	113343816	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CHCHD5	NM_032309	exon3	c.T183C	p.P61P	.	.	192	3	145	0	.	90
CLDN20	49861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155597357	155597357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CLDN20	NM_001001346	exon2	c.C504A	p.F168L	.	.	141	51	147	0	.	90
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130293202	130293202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	COL6A6	NM_001102608	exon7	c.A3380G	p.H1127R	.	.	183	74	171	0	.	76
CYP4A11	1579	broad.mit.edu	37	1	47395874	47395874	+	Missense_Mutation	SNP	A	A	C	rs45475502		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CYP4A11	NM_000778	exon12	c.T1473G	p.I491M	.	.	81	3	164	0	.	94
DCLRE1A	9937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115602174	115602174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	DCLRE1A	NM_014881	exon6	c.G2593T	p.A865S	.	.	98	38	92	0	.	228
DENND2C	163259	ucsc.edu	37	1	115151491	115151491	+	Missense_Mutation	SNP	C	C	T	rs200716799		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	DENND2C	NM_001256404	exon10	c.G1373A	p.R458H	.	.	36	4	46	0	C|0.999;T|0.001	229
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103029663	103029663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	DYNC2H1	NM_001377	exon28	c.T4285A	p.F1429I	.	.	167	60	214	0	.	68
ENTPD1	953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97626110	97626110	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ENTPD1	NM_001164178	exon10	c.G1539A	p.K513K	.	.	175	70	184	1	.	93
FAM228A	653140	broad.mit.edu	37	2	24413331	24413331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	.	NM_001040710	exon6	c.A452G	p.K151R	.	.	531	6	453	1	.	.
FAM47C	442444	broad.mit.edu	37	X	37028425	37028425	+	Missense_Mutation	SNP	A	A	G	rs145580328	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	FAM47C	NM_001013736	exon1	c.A1942G	p.N648D	.	.	138	6	138	1	A|1.000;G|0.000	111
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240286619	240286619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	FMN2	NM_020066	exon2	c.G1756A	p.A586T	.	.	95	82	43	0	.	145
FOLH1	2346	bcgsc.ca	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	rs116795343	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	FOLH1	NM_004476	exon7	c.G842A	p.R281H	.	.	206	10	171	2	C|0.974;T|0.026	579
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	.	.	197	10	162	3	A|0.994;G|0.006	579
FOXA2	3170	broad.mit.edu	37	20	22562677	22562677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	FOXA2	NM_021784	exon2	c.C1203G	p.H401Q	.	.	146	4	162	0	.	228
FRG1	2483	bcgsc.ca	37	4	190876263	190876263	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	FRG1	NM_004477	exon5	c.A389T	p.D130V	.	.	178	15	199	3	.	90
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	.	.	.	.	.	.	.	126	6	113	1	T|0.500;G|0.500	.
HAUS2	55142	hgsc.bcm.edu	37	15	42858992	42858992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	HAUS2	NM_018097	exon6	c.T686C	p.V229A	.	.	97	4	110	0	.	90
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197184307	197184307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	HECW2	NM_020760	exon9	c.G1307A	p.C436Y	.	.	85	29	87	0	.	668
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	185897698	185897698	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	HMCN1	NM_031935	exon10	c.T1451G	p.L484X	.	.	81	8	49	0	.	113
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57130461	57130461	+	Missense_Mutation	SNP	C	C	T	rs146776354		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	IL17RD	NM_017563	exon13	c.G2180A	p.R727H	.	.	120	29	118	0	C|1.000;T|0.000	500
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185339323	185339323	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	IRF2	NM_002199	exon5	c.A409T	p.K137X	.	.	94	65	183	0	.	91
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33644858	33644858	+	Missense_Mutation	SNP	G	G	A	rs147513071	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ITPR3	NM_002224	exon27	c.G3514A	p.V1172I	.	.	181	28	234	1	G|0.999;A|0.001	1085
ITSN1	6453	broad.mit.edu	37	21	35183527	35183527	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ITSN1	NM_003024	exon21	c.2567+1G>A	.	.	.	193	4	220	0	.	94
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91498042	91498042	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	KIF20B	NM_016195	exon20	c.G3324A	p.A1108A	.	.	95	36	102	0	.	93
LEFTY1	10637	broad.mit.edu	37	1	226076552	226076552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	LEFTY1	NM_020997	exon1	c.G215A	p.R72H	.	.	162	4	87	0	.	90
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40511063	40511063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MED14	NM_004229	exon31	c.C4360A	p.P1454T	.	.	409	131	505	1	.	289
MESP2	145873	hgsc.bcm.edu	37	15	90320173	90320173	+	Silent	SNP	A	A	G	rs113636330		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MESP2	NM_001039958	exon1	c.A585G	p.G195G	.	.	22	4	39	0	A|0.500;G|0.500	68
MLL2	8085	hgsc.bcm.edu	37	12	49448415	49448415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MLL2	NM_003482	exon3	c.C296A	p.P99H	.	.	118	5	142	0	.	612
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49443599	49443599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MLL2	NM_003482	exon11	c.C3772T	p.R1258W	.	.	146	62	193	0	.	612
MLLT4-AS1	653483	bcgsc.ca	37	6	168227006	168227025	+	RNA	DEL	CCAGCACCGCCCGTCTGGAA	CCAGCACCGCCCGTCTGGAA	-	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	CCAGCACCGCCCGTCTGGAA	CCAGCACCGCCCGTCTGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	.	.	.	.	.	.	.	38	10	53	0	.	.
MRPS16	51021	ucsc.edu	37	10	75008880	75008880	+	RNA	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MRPS16	.	.	.	.	.	.	50	1	57	0	.	90
MUC2	4583	mdanderson.org	37	11	1092910	1092910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MUC2	NM_002457	exon30	c.G4729A	p.G1577S	.	.	35	4	21	0	.	90
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	51255367	51255367	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	NRXN1	NM_004801	exon2	c.C45A	p.C15X	.	.	17	9	16	0	.	92
ONECUT2	9480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	55103728	55103728	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ONECUT2	NM_004852	exon1	c.C780T	p.P260P	.	.	68	29	61	0	.	494
OR4C15	81309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55322154	55322154	+	Silent	SNP	G	G	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	OR4C15	NM_001001920	exon1	c.G372C	p.A124A	.	.	62	5	41	0	.	70
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4869943	4869943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	OR51S1	NM_001004758	exon1	c.C496T	p.P166S	.	.	93	46	82	0	.	72
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56468353	56468353	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	.	NM_001013358	exon1	c.T490A	p.S164T	.	.	138	37	156	0	.	.
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58299287	58299287	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PCDH17	NM_001040429	exon4	c.G3339A	p.E1113E	.	.	141	56	107	0	.	97
PLEKHG3	26030	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65199611	65199611	+	Missense_Mutation	SNP	G	G	T	rs75568560	alternate_allele	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PLEKHG3	NM_015549	exon10	c.G1169T	p.R390L	.	.	176	68	234	1	G|1.000;A|0.000	91
PLXNA1	5361	broad.mit.edu	37	3	126726740	126726740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PLXNA1	NM_032242	exon8	c.G2096A	p.R699H	.	.	48	3	48	0	.	93
PLXNA3	55558	ucsc.edu	37	X	153698391	153698391	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PLXNA3	NM_017514	exon29	c.G4867T	p.E1623X	.	.	262	65	353	3	.	132
PPP1R3F	89801	hgsc.bcm.edu;bcgsc.ca	37	X	49138482	49138483	+	Nonsense_Mutation	INS	-	-	TAGCCCCCACCTGA	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PPP1R3F	NM_033215	exon3	c.1099_1100insTAGCCCCCACCTGA	p.V367_A368delinsVAPTX	.	.	115	10	179	0	.	229
RPAP1	26015	ucsc.edu;bcgsc.ca	37	15	41815063	41815063	+	Missense_Mutation	SNP	C	C	T	rs61748721	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	RPAP1	NM_015540	exon19	c.G2642A	p.R881H	.	.	65	9	66	0	C|0.958;T|0.042	153
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101350343	101350343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	RTL1	NM_001134888	exon1	c.C783A	p.S261R	.	.	52	27	67	0	.	46
SCRT2	85508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	644968	644968	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SCRT2	NM_033129	exon2	c.C271T	p.L91L	.	.	30	16	39	0	.	90
SIK3	23387	broad.mit.edu	37	11	116746134	116746134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SIK3	NM_025164	exon10	c.G1099A	p.V367I	.	.	58	3	56	0	.	919
SNX14	57231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	86223594	86223594	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SNX14	NM_153816	exon26	c.C2577T	p.N859N	.	.	39	5	48	0	.	226
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121476237	121476237	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SORL1	NM_003105	exon35	c.A4905G	p.A1635A	.	.	138	70	136	0	.	228
SSTR3	6753	broad.mit.edu	37	22	37603385	37603385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SSTR3	NM_001051	exon2	c.G458A	p.R153H	.	.	51	3	62	0	.	522
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52551075	52551075	+	Missense_Mutation	SNP	G	G	A	rs144391932	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	STAB1	NM_015136	exon42	c.G4439A	p.R1480Q	.	.	130	59	135	0	G|1.000;A|0.000	139
TEF	7008	broad.mit.edu	37	22	41783376	41783376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	TEF	NM_003216	exon2	c.A179G	p.K60R	.	.	60	3	54	0	.	91
TIAL1	7073	broad.mit.edu	37	10	121338316	121338316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	TIAL1	NM_001033925	exon7	c.G529T	p.G177C	.	.	181	5	180	2	.	91
TMEM14B	81853	ucsc.edu	37	6	10756728	10756728	+	Missense_Mutation	SNP	C	C	T	rs72821581	byfrequency	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	TMEM14B	NM_030969	exon6	c.C322T	p.R108C	.	.	110	21	112	7	C|0.960;T|0.040	90
TTC18	118491	broad.mit.edu	37	10	75035223	75035223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	TTC18	NM_145170	exon23	c.C2864A	p.A955E	.	.	93	5	95	0	.	92
YLPM1	56252	broad.mit.edu	37	14	75278422	75278422	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	YLPM1	NM_019589	exon10	c.A5328G	p.E1776E	.	.	192	4	205	0	.	71
ZFC3H1	196441	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72026111	72026111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ZFC3H1	NM_144982	exon15	c.G3001T	p.V1001L	.	.	82	9	79	1	.	138
ZNF449	203523	broad.mit.edu	37	X	134494164	134494164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ZNF449	NM_152695	exon5	c.A720T	p.K240N	.	.	480	9	577	0	.	132
ZNF69	7620	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	12015547	12015547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ZNF69	NM_021915	exon4	c.T293C	p.L98P	.	.	121	11	149	0	.	91
