Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43401071	43401071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ABCC10	NM_001198934	exon3	c.G1353A	p.M451I	.	.	63	8	49	0	.	96
ABR	29	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	909328	909328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ABR	NM_021962	exon23	c.G2572A	p.D858N	.	.	29	8	36	0	.	91
AHSA1	10598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77931884	77931884	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	AHSA1	NM_012111	exon6	c.T564G	p.A188A	.	.	36	7	31	0	.	226
ALDH1A2	8854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58254254	58254254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ALDH1A2	NM_003888	exon10	c.G1207T	p.V403L	.	.	158	25	148	0	.	226
ANGPT1	284	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108348431	108348431	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ANGPT1	NM_001199859	exon3	c.G522C	p.E174D	.	.	157	32	133	0	.	521
AP2A2	161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	985500	985500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	AP2A2	NM_001242837	exon8	c.C883T	p.P295S	.	.	46	8	27	0	.	90
ASPSCR1	79058	broad.mit.edu	37	17	79937093	79937093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ASPSCR1	NM_001251888	exon2	c.A136G	p.N46D	.	.	39	4	41	1	.	877
C14orf37	145407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58478850	58478850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	C14orf37	NM_001001872	exon6	c.A2108G	p.K703R	.	.	573	89	446	0	.	90
CASK	8573	ucsc.edu	37	X	41485952	41485952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CASK	NM_001126054	exon10	c.C920T	p.A307V	.	.	42	4	32	0	.	616
CCKBR	887	broad.mit.edu	37	11	6291090	6291090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CCKBR	NM_176875	exon2	c.A343C	p.N115H	.	.	48	4	42	0	.	574
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73330627	73330627	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CDH23	NM_052836	exon8	c.C705A	p.I235I	.	.	83	13	105	0	.	563
CENPO	79172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25016357	25016357	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CENPO	NM_001199803	exon1	c.C15T	p.L5L	.	.	94	24	63	0	.	91
CERS5	91012	broad.mit.edu	37	12	50560946	50560946	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_147190	exon1	c.G135A	p.R45R	.	.	31	4	27	0	.	.
CLIP1	6249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122845703	122845703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CLIP1	NM_002956	exon5	c.G808A	p.G270S	.	.	62	15	50	0	.	155
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75887438	75887438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	COL12A1	NM_004370	exon12	c.T2378C	p.I793T	.	.	139	25	140	0	.	142
CRIPAK	285464	bcgsc.ca	37	4	1388759	1388759	+	Missense_Mutation	SNP	C	C	T	rs112233131	byfrequency	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CRIPAK	NM_175918	exon1	c.C460T	p.R154W	.	.	37	14	31	1	C|0.966;T|0.034	90
CTNNBL1	56259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36470822	36470822	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CTNNBL1	NM_030877	exon13	c.1392+1G>A	.	.	.	89	17	78	0	.	228
CUX2	23316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111655734	111655734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CUX2	NM_015267	exon3	c.A215T	p.Q72L	.	.	53	11	36	0	.	140
CWC27	10283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64079679	64079679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CWC27	NM_005869	exon4	c.G269T	p.R90L	.	.	77	18	69	0	.	90
CYP11B2	1585	ucsc.edu	37	8	143996616	143996616	+	Missense_Mutation	SNP	A	A	T	rs151052374		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CYP11B2	NM_000498	exon3	c.T441A	p.D147E	.	.	90	22	57	3	A|1.000;T|0.000	90
CYP4Z2P	163720	broad.mit.edu	37	1	47325357	47325357	+	RNA	SNP	A	A	G	rs75156930		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	.	.	.	.	.	.	234	7	194	0	.	.
CYTB	0	broad.mit.edu	37	MT	15077	15077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	ENST00000361789	exon1	c.G331A	p.E111K	.	.	222	6	14	0	.	.
DDX5	1655	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62498310	62498310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DDX5	NM_004396	exon10	c.A1126G	p.S376G	.	.	125	16	82	1	.	228
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32489378	32489378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DDX58	NM_014314	exon6	c.A763G	p.M255V	.	.	190	25	130	0	.	230
DOCK8	81704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	371468	371468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DOCK8	NM_203447	exon17	c.G1909T	p.A637S	.	.	117	20	109	0	.	517
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103006470	103006470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DYNC2H1	NM_001377	exon17	c.G2367C	p.R789S	.	.	140	32	144	0	.	68
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14748990	14748990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	EMR3	NM_032571	exon11	c.G1411A	p.G471S	.	.	88	18	52	0	.	528
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25203506	25203506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ENTPD6	NM_001247	exon12	c.G1078T	p.V360L	.	.	55	12	39	0	.	90
EWSR1	2130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29695604	29695604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	EWSR1	NM_013986	exon17	c.G1709T	p.R570I	.	.	116	21	107	0	.	3375
FAF1	11124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51323604	51323604	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FAF1	NM_007051	exon2	c.A111T	p.L37F	.	.	260	42	223	0	.	652
FAM170B	170370	broad.mit.edu	37	10	50341954	50341954	+	Missense_Mutation	SNP	A	A	G	rs34110351	byfrequency	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_001164484	exon1	c.T10C	p.Y4H	.	.	100	4	110	0	A|0.759;G|0.241	.
FAM184B	27146	broad.mit.edu	37	4	17711179	17711179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FAM184B	NM_015688	exon2	c.C230T	p.A77V	.	.	40	3	56	0	.	23
FAT3	120114	broad.mit.edu	37	11	92616485	92616485	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FAT3	NM_001008781	exon23	c.A12863C	p.N4288T	.	.	21	8	17	4	.	73
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281994	152281994	+	Missense_Mutation	SNP	G	G	T	rs200622741	alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FLG	NM_002016	exon3	c.C5368A	p.Q1790K	.	.	122	31	125	0	.	106
FREM2	341640	ucsc.edu	37	13	39358886	39358886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FREM2	NM_207361	exon6	c.G5960T	p.G1987V	.	.	44	4	48	0	.	100
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135441570	135441570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	GPR112	NM_153834	exon11	c.T7100C	p.L2367S	.	.	167	63	111	0	.	183
GPR12	2835	broad.mit.edu	37	13	27333209	27333209	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	GPR12	NM_005288	exon2	c.C756A	p.T252T	.	.	39	3	50	0	.	90
GYG2P1	352887	bcgsc.ca	37	Y	14518738	14518738	+	RNA	SNP	T	T	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NR_033667	exon5	c.298-2A>T	.	.	.	63	27	76	0	.	.
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37295937	37295937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HEATR5B	NM_019024	exon8	c.G1064A	p.R355Q	.	.	65	13	53	0	.	142
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197081786	197081786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HECW2	NM_020760	exon27	c.G4440T	p.W1480C	.	.	93	18	88	0	.	668
HELZ2	85441	broad.mit.edu;bcgsc.ca	37	20	62194883	62194883	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_001037335	exon9	c.G5292A	p.T1764T	.	.	23	6	18	0	.	.
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185902929	185902929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HMCN1	NM_031935	exon11	c.G1801A	p.A601T	.	.	68	10	55	0	.	113
HOMEZ	57594	bcgsc.ca	37	14	23744825	23744829	+	Frame_Shift_Del	DEL	CTTCC	CTTCC	-	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	CTTCC	CTTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HOMEZ	NM_020834	exon2	c.1608_1612del	p.536_538del	.	.	65	3	82	0	.	22
HTR3C	170572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	183772621	183772621	+	Nonsense_Mutation	SNP	C	C	A	rs180785188	alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HTR3C	NM_130770	exon2	c.C180A	p.Y60X	.	.	81	16	56	0	C|0.999;T|0.001	154
IBSP	3381	bcgsc.ca	37	4	88732531	88732531	+	Silent	SNP	T	T	C	rs4693878	byfrequency	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	IBSP	NM_004967	exon7	c.T423C	p.N141N	.	.	107	5	86	0	T|0.204;C|0.796	90
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201196308	201196308	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	IGFN1	NM_001164586	exon23	c.A11085T	p.A3695A	.	.	45	17	29	0	.	71
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	63468076	63468076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KCNH5	NM_172375	exon4	c.C406A	p.Q136K	.	.	94	16	68	0	.	98
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57180856	57180856	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIAA1211	NM_020722	exon8	c.G1188A	p.A396A	.	.	41	15	26	0	.	70
KIAA1524	57650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108281998	108281998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIAA1524	NM_020890	exon13	c.C1609G	p.P537A	.	.	200	34	174	1	.	92
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138603314	138603314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIAA1549	NM_020910	exon2	c.C1058T	p.A353V	.	.	55	9	32	0	.	369
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200562884	200562884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIF14	NM_014875	exon15	c.T2563G	p.F855V	.	.	79	14	73	0	.	140
KLHL35	283212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75134789	75134789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_001039548	exon5	c.T1510A	p.Y504N	.	.	32	9	35	0	.	.
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	56	4	48	0	.	92
LCA5	167691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80197406	80197406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	LCA5	NM_001122769	exon8	c.A1409G	p.K470R	.	.	231	49	242	0	.	90
LOXL3	84695	bcgsc.ca	37	2	74761688	74761688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	LOXL3	NM_032603	exon10	c.G1793A	p.R598H	.	.	62	5	47	0	.	226
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	MLLT3	NM_004529	exon5	c.C504T	p.S168S	.	.	90	6	59	2	.	660
MUC4	4585	broad.mit.edu	37	3	195505833	195505833	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	MUC4	NM_018406	exon2	c.C12618T	p.A4206A	.	.	60	4	48	0	.	90
MUC4	4585	broad.mit.edu	37	3	195509498	195509498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	MUC4	NM_018406	exon2	c.G8953A	p.A2985T	.	.	41	8	28	0	.	90
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195512519	195512519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	MUC4	NM_018406	exon2	c.T5932C	p.S1978P	.	.	159	7	114	1	.	90
MYB	4602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135515497	135515497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	MYB	NM_001161656	exon8	c.C847A	p.H283N	.	.	62	9	61	0	.	838
NAGK	55577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71304745	71304745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	NAGK	NM_017567	exon9	c.A961T	p.S321C	.	.	61	10	47	0	.	115
NBPF4	148545	broad.mit.edu	37	1	108769307	108769307	+	Silent	SNP	G	G	A	rs2582071		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_001143989	exon14	c.C1869T	p.S623S	.	.	191	5	132	2	G|0.500;A|0.500	.
NCOA3	8202	ucsc.edu;mdanderson.org	37	20	46279827	46279827	+	Silent	SNP	G	G	A	rs6018623	byfrequency	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	NCOA3	NM_181659	exon20	c.G3753A	p.Q1251Q	.	.	67	21	47	0	G|0.861;A|0.139	229
OR10H5	284433	broad.mit.edu;mdanderson.org	37	19	15905584	15905584	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	OR10H5	NM_001004466	exon1	c.T726C	p.C242C	.	.	114	16	84	1	.	69
OR2A5	393046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143748366	143748366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	OR2A5	NM_012365	exon1	c.G872T	p.S291I	.	.	34	5	31	0	.	93
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20769305	20769305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PDE3A	NM_000921	exon4	c.G1411A	p.A471T	.	.	40	9	47	0	.	94
PDE4B	5142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66713174	66713174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PDE4B	NM_001037341	exon4	c.C313G	p.R105G	.	.	91	26	99	0	.	92
PEAK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77407661	77407661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_024776	exon8	c.A4078T	p.I1360F	.	.	47	8	41	0	.	.
PLAG1	5324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	57080762	57080762	+	Missense_Mutation	SNP	G	G	A	rs144724863		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PLAG1	NM_001114634	exon3	c.C67T	p.R23C	.	.	98	8	110	0	G|1.000;A|0.000	1107
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48451118	48451118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PLXNB1	NM_001130082	exon33	c.G5800T	p.D1934Y	.	.	93	10	74	0	.	293
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	68864764	68864764	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PREX2	NM_025170	exon1	c.G135T	p.L45L	.	.	113	14	101	0	.	390
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23398175	23398175	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PTCHD1	NM_173495	exon2	c.C819A	p.V273V	.	.	59	21	48	0	.	135
RAI2	10742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	17819379	17819379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	RAI2	NM_001172739	exon3	c.C752T	p.P251L	.	.	63	19	53	0	.	131
RFC3	5983	broad.mit.edu	37	13	34398073	34398073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	RFC3	NM_002915	exon3	c.T245A	p.I82N	.	.	198	5	226	0	.	227
RGL3	57139	broad.mit.edu	37	19	11516057	11516057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	RGL3	NM_001035223	exon8	c.T1042C	p.S348P	.	.	61	3	35	0	.	227
RSL24D1	51187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	55475581	55475581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	RSL24D1	NM_016304	exon5	c.A350G	p.E117G	.	.	166	25	130	1	.	91
S1PR3	1903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	91616133	91616133	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	S1PR3	NM_005226	exon2	c.G18A	p.P6P	.	.	48	10	43	0	.	949
SALL1	6299	bcgsc.ca	37	16	51175658	51175658	+	Missense_Mutation	SNP	T	T	C	rs13336129	byfrequency	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SALL1	NM_002968	exon2	c.A475G	p.S159G	.	.	109	7	93	0	T|0.933;C|0.067	98
SBF1P1	100133234	ucsc.edu	37	8	56366735	56366735	+	RNA	SNP	G	G	A	rs2929043	byfrequency	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	.	.	.	.	.	.	19	9	11	0	G|0.604;A|0.396	.
SLC2A3	6515	broad.mit.edu	37	12	8083845	8083845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SLC2A3	NM_006931	exon4	c.C506T	p.A169V	.	.	162	6	174	0	.	94
SLC7A9	11136	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	33349420	33349420	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SLC7A9	NM_001243036	exon9	c.T903A	p.A301A	.	.	19	5	11	0	.	91
SLCO4C1	353189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101592902	101592902	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SLCO4C1	NM_180991	exon8	c.A1386G	p.G462G	.	.	353	73	272	0	.	93
SMIM5	643008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	73636388	73636389	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_001162995	exon2	c.107_108insA	p.S36fs	.	.	76	10	78	0	.	.
SNAP91	9892	broad.mit.edu;ucsc.edu	37	6	84270663	84270663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SNAP91	NM_001242792	exon26	c.G2446T	p.G816X	.	.	120	27	116	1	.	23
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66460755	66460755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SPTBN2	NM_006946	exon23	c.G4756T	p.D1586Y	.	.	41	15	52	0	.	155
TAS1R3	83756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1266874	1266874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TAS1R3	NM_152228	exon1	c.G149A	p.G50D	.	.	40	6	31	0	.	22
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164393739	164393739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TKTL2	NM_032136	exon1	c.G1148T	p.R383L	.	.	61	11	72	0	.	95
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24831569	24831569	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TNRC6A	NM_014494	exon22	c.G5190A	p.P1730P	.	.	121	28	100	0	.	92
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577511	7577511	+	Missense_Mutation	SNP	A	A	G	rs28934577	bycluster;alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	TP53,NS,carcinoma,0	TP53	NM_000546	exon7	c.T770C	p.L257P	.	.	64	17	80	0	A|1.000;|0.000	70225
UBR4	23352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19408022	19408022	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	UBR4	NM_020765	exon103	c.G15054T	p.L5018L	.	.	91	24	56	1	.	612
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82836639	82836639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	VCAN	NM_004385	exon8	c.A7817G	p.H2606R	.	.	74	21	74	0	.	238
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177041041	177041041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	WDR17	NM_170710	exon5	c.T403C	p.C135R	.	.	179	20	181	0	.	95
WDR19	57728	broad.mit.edu;bcgsc.ca	37	4	39246144	39246144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	WDR19	NM_025132	exon23	c.G2617T	p.A873S	.	.	93	7	86	0	.	67
ZBED2	79413	broad.mit.edu	37	3	111312520	111312520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ZBED2	NM_024508	exon2	c.A529G	p.R177G	.	.	71	5	43	0	.	91
ZIC4	84107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147113833	147113833	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ZIC4	NM_001168378	exon3	c.G644C	p.G215A	.	.	61	8	65	0	.	91
NPIPB15	0	bcgsc.ca	37	16	74425702	74425703	+	Missense_Mutation	DNP	GG	GG	AA	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	.	.	.	p.E353K	.	.	.	.	.	.	.	
