Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACIN1	22985	hgsc.bcm.edu	37	14	23549881	23549881	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ACIN1	NM_001164814	exon6	c.G837A	p.E279E	.	.	139	12	153	0	.	156
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18777646	18777646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ADAMTSL1	NM_001040272	exon19	c.G3419A	p.G1140D	.	.	28	14	39	0	.	230
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63412194	63412194	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_152424	exon2	c.T973C	p.L325L	.	.	87	9	97	0	.	.
AMH	268	hgsc.bcm.edu;mdanderson.org	37	19	2249687	2249687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	AMH	NM_000479	exon1	c.G356T	p.G119V	.	.	41	16	32	0	.	130
ANO3	63982	broad.mit.edu	37	11	26669275	26669275	+	Silent	SNP	C	C	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ANO3	NM_031418	exon24	c.C2448G	p.L816L	.	.	129	4	155	0	.	93
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21233705	21233705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	APOB	NM_000384	exon26	c.G6035A	p.R2012Q	.	.	194	57	217	0	.	175
AQP11	282679	broad.mit.edu	37	11	77314659	77314659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	AQP11	NM_173039	exon2	c.G678C	p.M226I	.	.	167	5	163	0	.	90
ARCN1	372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118452209	118452209	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ARCN1	NM_001655	exon2	c.G252A	p.R84R	.	.	56	25	70	0	.	90
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119133178	119133178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ARHGAP31	NM_020754	exon12	c.A2402C	p.K801T	.	.	35	12	46	0	.	92
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	54961384	54961384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	AURKA	NM_198437	exon3	c.G248A	p.S83N	.	.	200	77	227	0	.	1601
AVL9	23080	broad.mit.edu	37	7	32598232	32598232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	AVL9	NM_015060	exon9	c.T671C	p.L224P	.	.	185	4	237	2	.	90
BET1L	51272	ucsc.edu	37	11	205648	205648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	BET1L	NM_016526	exon3	c.G131C	p.R44T	.	.	17	4	35	0	.	514
BMPR2	659	broad.mit.edu	37	2	203424667	203424667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	BMPR2	NM_001204	exon13	c.T3115C	p.X1039R	.	.	61	4	53	0	.	1003
C11orf54	28970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93494680	93494680	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C11orf54	NM_014039	exon8	c.625-1G>A	.	.	.	140	40	129	0	.	90
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67159932	67159932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C16orf70	NM_025187	exon3	c.A218G	p.N73S	.	.	30	9	36	0	.	70
C17orf47	284083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56620718	56620718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C17orf47	NM_001038704	exon1	c.T830C	p.V277A	.	.	130	50	107	0	.	135
C1QL2	165257	broad.mit.edu	37	2	119915802	119915802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C1QL2	NM_182528	exon1	c.C44A	p.A15E	.	.	19	6	16	1	.	91
C9orf135	138255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	72459518	72459518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C9orf135	NM_001010940	exon2	c.C238T	p.R80X	.	.	43	13	76	0	.	69
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181701775	181701775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CACNA1E	NM_001205293	exon20	c.C2553A	p.S851R	.	.	98	18	61	0	.	95
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104819259	104819259	+	Splice_Site	SNP	C	C	A	rs144482787	alternate_allele	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CASP4	NM_033306	exon7	c.757+1G>T	.	.	.	46	15	70	0	C|1.000;T|0.000	660
CDC23	8697	broad.mit.edu	37	5	137524750	137524750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CDC23	NM_004661	exon16	c.T1711C	p.F571L	.	.	209	5	155	1	.	226
CDKN2A	1029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21971111	21971111	+	Missense_Mutation	SNP	G	G	C	rs121913385	alternate_allele	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	CDKN2A,NS,carcinoma,+1	CDKN2A	NM_058195	exon2	c.C290G	p.A97G	.	.	35	17	71	0	.	23992
CFL1	1072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65623665	65623665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CFL1	NM_005507	exon2	c.A52T	p.M18L	.	.	62	23	79	0	.	90
CHD7	55636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61693771	61693771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CHD7	NM_017780	exon3	c.C1878A	p.N626K	.	.	24	5	30	0	.	141
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111141810	111141810	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	COL4A2	NM_001846	exon35	c.G3226C	p.G1076R	.	.	66	15	107	0	.	95
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	71003965	71003965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	COL9A1	NM_001851	exon5	c.601delA	p.I201fs	.	.	114	45	121	0	.	94
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211455540	211455540	+	Missense_Mutation	SNP	G	G	A	rs148654695		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CPS1	NM_001122633	exon10	c.G875A	p.R292H	.	.	40	16	61	0	G|0.999;A|0.000	162
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	bycluster	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C98G	p.S33C	.	.	149	16	215	1	.	24361
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225376243	225376243	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CUL3	NM_001257198	exon6	c.A729G	p.V243V	.	.	154	47	202	0	.	229
DDO	8528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110714035	110714035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DDO	NM_003649	exon5	c.G1053T	p.R351S	.	.	30	14	46	1	.	155
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31496267	31496267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DMD	NM_004006	exon59	c.G8893T	p.D2965Y	.	.	104	30	111	0	.	265
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196891574	196891574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DNAH7	NM_018897	exon7	c.C577A	p.P193T	.	.	89	26	105	0	.	102
DSPP	1834	bcgsc.ca	37	4	88537123	88537123	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DSPP	NM_014208	exon5	c.C3309T	p.S1103S	.	.	14	8	45	1	.	90
DSPP	1834	bcgsc.ca	37	4	88537135	88537135	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DSPP	NM_014208	exon5	c.T3321C	p.D1107D	.	.	15	6	48	0	.	90
DSPP	1834	bcgsc.ca	37	4	88537159	88537159	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DSPP	NM_014208	exon5	c.T3345C	p.S1115S	.	.	13	5	37	0	.	90
ENTPD1	953	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97599472	97599472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ENTPD1	NM_001164178	exon3	c.T205C	p.S69P	.	.	170	51	227	2	.	93
EP400	57634	bcgsc.ca	37	12	132547093	132547093	+	Silent	SNP	A	A	G	rs28513925	byfrequency	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	EP400	NM_015409	exon47	c.A8181G	p.Q2727Q	.	.	40	4	42	0	A|0.500;G|0.500	520
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	EP400	NM_015409	exon47	c.G8175A	p.Q2725Q	.	.	38	5	40	1	.	520
FFAR4	338557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95326941	95326941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_001195755	exon1	c.G464T	p.R155L	.	.	48	17	58	0	.	.
FGF14	2259	bcgsc.ca;mdanderson.org	37	13	102379114	102379114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	FGF14	NM_175929	exon4	c.A470C	p.N157T	.	.	88	32	136	0	.	586
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	86089754	86089754	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	FLRT2	NM_013231	exon2	c.G1896A	p.G632G	.	.	55	26	81	0	.	94
GGT3P	2679	broad.mit.edu	37	22	18778609	18778609	+	RNA	SNP	C	C	T	rs499895	bysubmitter;by2hit2allele	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	.	.	.	.	.	.	222	4	423	1	C|1.000;|0.000	.
GPATCH8	23131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42477055	42477055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	GPATCH8	NM_001002909	exon8	c.G2390T	p.R797L	.	.	99	30	113	1	.	94
GPHN	10243	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	67389470	67389470	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	GPHN	NM_001024218	exon7	c.G544T	p.E182X	.	.	23	15	87	1	.	228
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185976272	185976272	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	HMCN1	NM_031935	exon30	c.G4488A	p.L1496L	.	.	172	139	119	0	.	113
HYDIN	54768	broad.mit.edu	37	16	71103269	71103269	+	Silent	SNP	T	T	C	rs144904028		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	HYDIN	NM_001198542	exon14	c.A1956G	p.P652P	.	.	191	5	164	0	.	92
IFI30	10437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18284657	18284657	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IFI30	NM_006332	exon1	c.C6T	p.T2T	.	.	15	4	24	0	.	226
IFNA13	3447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21367937	21367937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IFNA13	NM_006900	exon1	c.T73G	p.C25G	.	.	86	11	120	0	.	23
INHA	3623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220439974	220439974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	INHA	NM_002191	exon2	c.G827T	p.W276L	.	.	102	37	89	0	.	91
INSIG1	3638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155094008	155094008	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	INSIG1	NM_005542	exon4	c.C585T	p.A195A	.	.	221	67	239	0	.	90
INSL6	11172	broad.mit.edu	37	9	5185468	5185468	+	Silent	SNP	G	G	A	rs141353328	byfrequency	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	INSL6	NM_007179	exon1	c.C135T	p.C45C	.	.	55	3	89	1	G|0.999;A|0.001	90
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599650	3599650	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IRX1	NM_024337	exon2	c.C588A	p.R196R	.	.	68	31	60	0	.	228
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65306964	65306964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	JAK1	NM_002227	exon19	c.A2613C	p.E871D	.	.	129	45	145	0	.	3900
KAT2B	8850	hgsc.bcm.edu;broad.mit.edu	37	3	20181810	20181810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KAT2B	NM_003884	exon13	c.G1958T	p.R653L	.	.	95	4	71	0	.	228
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210856666	210856666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KCNH1	NM_172362	exon11	c.C2927A	p.P976Q	.	.	130	15	85	0	.	94
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	443421	443421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KDM5A	NM_001042603	exon11	c.C1476G	p.I492M	.	.	86	39	148	0	.	227
KIAA1586	57691	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56918371	56918371	+	Silent	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KIAA1586	NM_020931	exon4	c.A1074C	p.I358I	.	.	91	38	115	2	.	44
KRT85	3891	broad.mit.edu	37	12	52756200	52756200	+	Missense_Mutation	SNP	A	A	G	rs201348382	byfrequency	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KRT85	NM_002283	exon7	c.T1133C	p.L378P	.	.	61	11	53	7	A|0.997;G|0.003	91
KRTAP10-8	386681	bcgsc.ca	37	21	46032696	46032696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KRTAP10-8	NM_198695	exon1	c.T679C	p.S227P	.	.	64	4	57	0	.	153
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50869602	50869602	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LARP4	NM_052879	exon16	c.A2130G	p.R710R	.	.	91	20	141	0	.	91
LILRA2	11027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55086255	55086255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LILRA2	NM_001130917	exon4	c.G410T	p.G137V	.	.	66	18	53	0	.	91
LMTK2	22853	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	97833378	97833378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LMTK2	NM_014916	exon13	c.G4363T	p.A1455S	.	.	25	9	51	0	.	1381
LOXHD1	125336	ucsc.edu;bcgsc.ca	37	18	44143124	44143124	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_144612	exon18	c.C2502A	p.V834V	.	.	29	4	60	0	.	.
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210561763	210561763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MAP2	NM_002374	exon9	c.C4510T	p.R1504W	.	.	81	29	99	0	.	591
MARK3	4140	broad.mit.edu	37	14	103964842	103964842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MARK3	NM_001128918	exon16	c.C1848A	p.N616K	.	.	130	14	288	10	.	360
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	90484380	90484380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MDN1	NM_014611	exon13	c.C1894T	p.R632W	.	.	148	10	163	0	.	100
MLLT3	4300	bcgsc.ca	37	9	20414376	20414376	+	Silent	SNP	A	A	G	rs1761445	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MLLT3	NM_004529	exon5	c.T468C	p.S156S	.	.	25	5	41	0	A|0.905;G|0.095	660
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MLLT3	NM_004529	exon5	c.C465T	p.S155S	.	.	22	4	40	0	.	660
MUC4	4585	bcgsc.ca	37	3	195512549	195512549	+	Missense_Mutation	SNP	A	A	G	rs201832232		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MUC4	NM_018406	exon2	c.T5902C	p.S1968P	.	.	187	25	157	7	A|0.998;G|0.002	90
MUC4	4585	broad.mit.edu	37	3	195506005	195506005	+	Missense_Mutation	SNP	A	A	C	rs202017381		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MUC4	NM_018406	exon2	c.T12446G	p.I4149S	.	.	47	7	50	2	.	90
MUC4	4585	broad.mit.edu	37	3	195506007	195506007	+	Silent	SNP	G	G	A	rs71635085		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MUC4	NM_018406	exon2	c.C12444T	p.T4148T	.	.	50	5	50	1	G|1.000;|0.000	90
MYF5	4617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	81112792	81112792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MYF5	NM_005593	exon3	c.730delG	p.G244fs	.	.	75	22	77	0	.	91
NCOA3	8202	bcgsc.ca	37	20	46279839	46279839	+	Silent	SNP	G	G	A	rs2664555		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	NCOA3	NM_181659	exon20	c.G3765A	p.Q1255Q	.	.	40	5	59	0	.	229
NDUFS5	4725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39494585	39494585	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	NDUFS5	NM_001184979	exon2	c.C189T	p.F63F	.	.	86	31	89	0	.	90
NHSL1	57224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138752106	138752106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	NHSL1	NM_020464	exon5	c.G3388C	p.E1130Q	.	.	161	43	172	1	.	68
NLN	57486	broad.mit.edu	37	5	65084148	65084148	+	Missense_Mutation	SNP	G	G	A	rs200879136		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	NLN	NM_020726	exon8	c.G1162A	p.V388M	.	.	157	5	162	0	G|0.999;A|0.001	90
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226590006	226590006	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PARP1	NM_001618	exon2	c.G195A	p.R65R	.	.	40	31	26	0	.	727
PGP	283871	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2264015	2264015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PGP	NM_001042371	exon2	c.A680G	p.Q227R	.	.	32	11	50	1	.	23
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	106545719	106545719	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PIK3CG	NM_002649	exon11	c.A3196T	p.K1066X	.	.	123	37	160	0	.	1316
POTEE	445582	broad.mit.edu	37	2	132021752	132021752	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_001083538	exon15	c.C2724A	p.I908I	.	.	106	5	139	0	.	.
PRRG1	5638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	37285115	37285115	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PRRG1	NM_001173490	exon3	c.C33A	p.A11A	.	.	354	130	566	1	.	194
PRRG1	5638	ucsc.edu;bcgsc.ca	37	X	37285114	37285114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PRRG1	NM_001173490	exon3	c.C32A	p.A11D	.	.	353	131	558	3	.	194
PRSS3	5646	bcgsc.ca	37	9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	rs201061108		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PRSS3	NM_001197097	exon2	c.G20A	p.S7N	.	.	63	11	65	4	.	90
PSMB10	5699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67968561	67968561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PSMB10	NM_002801	exon8	c.C724T	p.H242Y	.	.	53	22	62	0	.	90
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87683886	87683886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PTPN13	NM_080683	exon24	c.C3560A	p.S1187Y	.	.	48	24	82	0	.	230
PXN	5829	broad.mit.edu	37	12	120660695	120660695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PXN	NM_001080855	exon4	c.T464C	p.V155A	.	.	72	3	79	0	.	660
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	36008806	36008806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	RALGAPA1	NM_194301	exon40	c.G6194A	p.S2065N	.	.	64	18	65	0	.	138
RBBP5	5929	broad.mit.edu	37	1	205064162	205064162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	RBBP5	NM_005057	exon13	c.A1427G	p.D476G	.	.	268	5	175	1	.	226
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	56435197	56435197	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	RNF43	NM_017763	exon9	c.T1940A	p.L647H	.	.	82	7	89	0	.	92
RNU6-71	100873774	bcgsc.ca	37	6	56535509	56535521	+	RNA	DEL	TTCCAGCATAACC	TTCCAGCATAACC	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	TTCCAGCATAACC	TTCCAGCATAACC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	.	.	.	.	.	.	39	3	64	0	.	.
RPTN	126638	broad.mit.edu	37	1	152128054	152128054	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	RPTN	NM_001122965	exon3	c.A1521G	p.Q507Q	.	.	604	12	289	1	.	68
SEC22A	26984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	122978413	122978413	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SEC22A	NM_012430	exon6	c.700delG	p.G234fs	.	.	339	113	373	0	.	91
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	110384263	110384263	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SEC24B	NM_006323	exon2	c.C340T	p.Q114X	.	.	37	21	88	0	.	137
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42195738	42195738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SGK2	NM_016276	exon2	c.G247C	p.G83R	.	.	68	20	56	0	.	990
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78196581	78196581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC26A11	NM_173626	exon4	c.C362T	p.A121V	.	.	93	47	86	0	.	90
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211749034	211749047	+	Frame_Shift_Del	DEL	AAAACGTCTTTAAT	AAAACGTCTTTAAT	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	AAAACGTCTTTAAT	AAAACGTCTTTAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC30A1	NM_021194	exon2	c.1207_1220del	p.403_407del	.	.	95	65	77	0	.	93
SLC38A10	124565	broad.mit.edu	37	17	79226227	79226227	+	Silent	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC38A10	NM_001037984	exon13	c.T1713G	p.G571G	.	.	115	18	105	5	.	70
SLC7A7	9056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23242904	23242904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC7A7	NM_001126105	exon11	c.A1451C	p.Q484P	.	.	52	17	78	0	.	154
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111981884	111981884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_183061	exon10	c.C1084T	p.R362C	.	.	198	69	206	0	.	.
SPAG1	6674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101237520	101237520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SPAG1	NM_003114	exon14	c.C1808T	p.S603L	.	.	65	12	66	0	.	92
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	107460245	107460245	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ST6GAL2	NM_032528	exon2	c.C189A	p.G63G	.	.	40	16	32	0	.	191
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113098573	113098573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ST7L	NM_138729	exon12	c.C1313T	p.A438V	.	.	63	20	55	0	.	90
TADA3	10474	ucsc.edu	37	3	9833127	9833127	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	TADA3	NM_133480	exon2	c.C24A	p.P8P	.	.	43	4	47	0	.	226
TMEM44	93109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	194336377	194336377	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	TMEM44	NM_001166305	exon8	c.974delG	p.G325fs	.	.	120	45	167	0	.	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	.	.	48	27	94	0	C|1.000;|0.000	70225
TPO	7173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1440139	1440139	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	TPO	NM_175719	exon5	c.A465T	p.T155T	.	.	89	31	91	1	.	332
TUBG2	27175	broad.mit.edu	37	17	40815432	40815432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	TUBG2	NM_016437	exon6	c.C517A	p.P173T	.	.	51	5	61	0	.	91
UGT2B28	54490	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70160294	70160294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	UGT2B28	NM_053039	exon6	c.C1357T	p.P453S	.	.	46	21	70	1	.	91
USP48	84196	broad.mit.edu;bcgsc.ca	37	1	22084268	22084268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	USP48	NM_001032730	exon2	c.G143A	p.C48Y	.	.	46	14	88	1	.	659
WDR27	253769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170033072	170033072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	WDR27	NM_182552	exon21	c.C2194T	p.R732W	.	.	54	13	51	1	.	69
WISP3	8838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112375575	112375575	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	WISP3	NM_198239	exon1	c.C69A	p.L23L	.	.	75	13	62	0	.	90
ZNF195	7748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3380429	3380429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF195	NM_001130520	exon6	c.G1809T	p.E603D	.	.	83	35	100	1	.	90
ZNF329	79673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58639664	58639664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF329	NM_024620	exon4	c.G1207A	p.E403K	.	.	112	17	111	0	.	91
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109773122	109773122	+	Silent	SNP	G	G	A	rs147574890	byfrequency	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF462	NM_021224	exon13	c.G7332A	p.K2444K	.	.	28	8	41	0	G|0.999;A|0.001	95
ZNF469	84627	broad.mit.edu;mdanderson.org	37	16	88503345	88503345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_001127464	exon2	c.G9383A	p.R3128Q	.	.	11	3	20	0	.	.
