Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC5	10057	broad.mit.edu	37	3	183679309	183679309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ABCC5	NM_005688	exon16	c.C2369T	p.P790L	.	.	127	5	53	0	.	137
ACAD11	84129	bcgsc.ca	37	3	132297712	132297712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ACAD11	NM_032169	exon15	c.A1702G	p.S568G	.	.	156	6	66	0	.	91
ACAT2	39	bcgsc.ca	37	6	160199790	160199790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ACAT2	NM_005891	exon9	c.A1123G	p.R375G	.	.	76	4	46	0	.	91
ACOT1	641371	broad.mit.edu	37	14	74008216	74008216	+	Silent	SNP	C	C	G	rs201966235		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ACOT1	NM_001037161	exon2	c.C477G	p.G159G	.	.	490	9	163	0	C|0.786;G|0.214	44
ACSM2B	348158	ucsc.edu	37	16	20554582	20554582	+	Missense_Mutation	SNP	T	T	G	rs9941182	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ACSM2B	NM_182617	exon12	c.A1284C	p.E428D	.	.	229	76	65	0	.	94
ACTR3C	653857	broad.mit.edu;ucsc.edu	37	7	149983565	149983565	+	Missense_Mutation	SNP	T	T	C	rs76400975		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001164459	exon5	c.A362G	p.Q121R	.	.	197	74	56	0	T|0.500;C|0.500	.
ADAM29	11086	bcgsc.ca	37	4	175899088	175899088	+	Missense_Mutation	SNP	G	G	C	rs146933346	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ADAM29	NM_001130703	exon4	c.G2412C	p.R804S	.	.	103	11	40	0	C|0.001;G|0.999;T|0.000	729
ADNP	23394	broad.mit.edu	37	20	49508856	49508856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ADNP	NM_015339	exon5	c.G2395A	p.D799N	.	.	578	6	141	0	.	92
ADRM1	11047	ucsc.edu	37	20	60878628	60878628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ADRM1	NM_175573	exon2	c.A4G	p.T2A	.	.	26	4	17	0	.	90
AFF1	4299	broad.mit.edu	37	4	88016083	88016083	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AFF1	NM_001166693	exon8	c.T1245C	p.S415S	.	.	313	8	115	0	.	289
AGAP6	414189	broad.mit.edu	37	10	51768543	51768543	+	Missense_Mutation	SNP	T	T	C	rs76153144		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AGAP6	NM_001077665	exon8	c.T658C	p.S220P	.	.	432	9	116	0	T|0.500;C|0.500	1
AGBL5	60509	bcgsc.ca	37	2	27279610	27279610	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AGBL5	NM_021831	exon8	c.A1485G	p.K495K	.	.	86	5	48	0	.	154
AHCTF1	25909	bcgsc.ca	37	1	247019106	247019106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AHCTF1	NM_015446	exon31	c.A4307G	p.K1436R	.	.	228	7	69	0	.	97
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu	37	1	247007131	247007131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AHCTF1	NM_015446	exon34	c.6518delA	p.N2173fs	.	.	2536	15	197	0	.	97
AKR1C2	1646	ucsc.edu	37	10	5037962	5037962	+	Silent	SNP	A	A	G	rs13222		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AKR1C2	NM_001354	exon8	c.T666C	p.H222H	.	.	468	121	139	26	.	514
ANKRD17	26057	bcgsc.ca	37	4	73986772	73986772	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ANKRD17	NM_032217	exon20	c.A3675G	p.A1225A	.	.	119	5	49	0	.	234
ANKRD20A5P	440482	ucsc.edu	37	18	14183734	14183734	+	RNA	SNP	A	A	G	rs62085005	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ANKRD20A5P	.	.	.	.	.	.	166	50	45	4	A|0.938;G|0.062	90
ANKRD20A5P	440482	ucsc.edu	37	18	14183747	14183747	+	RNA	SNP	T	T	C	rs62085006		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ANKRD20A5P	.	.	.	.	.	.	147	20	43	5	.	90
ANKRD20A9P	284232	ucsc.edu	37	13	19442395	19442395	+	RNA	SNP	A	A	G	rs80177836		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	47	25	16	4	A|0.167;G|0.833	.
ANKRD30B	374860	ucsc.edu	37	18	14803745	14803745	+	Missense_Mutation	SNP	A	A	G	rs45533337	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ANKRD30B	NM_001145029	exon24	c.A2206G	p.T736A	.	.	1030	259	162	40	A|1.000;|0.000	24
ANKRD30B	374860	ucsc.edu	37	18	14851756	14851756	+	Silent	SNP	G	G	A	rs9676225	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ANKRD30B	NM_001145029	exon36	c.G3456A	p.T1152T	.	.	449	150	99	22	G|0.500;A|0.500	24
ANO10	55129	hgsc.bcm.edu	37	3	43647212	43647213	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ANO10	NM_001204833	exon2	c.133_134insA	p.D45fs	.	.	689	0	167	0	.	92
ANXA13	312	hgsc.bcm.edu	37	8	124707762	124707762	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ANXA13	NM_001003954	exon7	c.574delA	p.I192fs	.	.	601	11	113	2	.	93
AP2A2	161	bcgsc.ca	37	11	985524	985524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AP2A2	NM_001242837	exon8	c.T907C	p.S303P	.	.	65	4	50	0	.	90
AP2B1	163	bcgsc.ca	37	17	33968927	33968927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AP2B1	NM_001282	exon12	c.A1469G	p.K490R	.	.	166	7	78	0	.	91
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10471887	10471887	+	Silent	SNP	C	C	T	rs145453912	byfrequency;alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	APCDD1	NM_153000	exon3	c.C603T	p.A201A	.	.	69	26	30	0	C|1.000;G|0.000	90
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21231993	21231994	+	Frame_Shift_Ins	INS	-	-	CTCTACC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	APOB	NM_000384	exon26	c.7747_7748insGGTAGAG	p.Q2583fs	.	.	146	35	59	0	.	175
AQP7	364	ucsc.edu;bcgsc.ca	37	9	33386144	33386144	+	Silent	SNP	G	G	A	rs76209395	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AQP7	NM_001170	exon6	c.C456T	p.V152V	.	.	201	38	76	2	G|0.375;A|0.625	90
AQP7	364	ucsc.edu;bcgsc.ca	37	9	33386146	33386146	+	Missense_Mutation	SNP	C	C	A	rs76608797	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AQP7	NM_001170	exon6	c.G454T	p.V152F	.	.	204	35	76	0	C|0.785;A|0.215	90
ARHGAP11B	89839	broad.mit.edu	37	15	30925726	30925726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ARHGAP11B	NM_001039841	exon3	c.A234C	p.E78D	.	.	384	9	128	0	.	22
ARHGAP31	57514	broad.mit.edu;bcgsc.ca	37	3	119101978	119101978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ARHGAP31	NM_020754	exon6	c.T587C	p.L196P	.	.	156	10	71	0	.	92
ARHGEF5	7984	broad.mit.edu	37	7	144060770	144060770	+	Silent	SNP	T	T	C	rs141931104	by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ARHGEF5	NM_005435	exon2	c.T1008C	p.N336N	.	.	1181	11	178	0	T|0.891;C|0.109	229
ATG9A	79065	bcgsc.ca	37	2	220089885	220089885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ATG9A	NM_001077198	exon7	c.T424C	p.F142L	.	.	70	5	44	0	.	91
ATP1A4	480	hgsc.bcm.edu	37	1	160134106	160134106	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ATP1A4	NM_144699	exon7	c.939delT	p.T313fs	.	.	1645	12	191	1	.	94
AZIN1	51582	ucsc.edu	37	8	103841637	103841637	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AZIN1	NM_015878	exon12	c.A1098G	p.E366E	.	.	416	3	87	0	.	90
B3GAT2	135152	ucsc.edu	37	6	71603956	71603956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	B3GAT2	NM_080742	exon2	c.T611C	p.V204A	.	.	42	7	32	1	.	93
BCAP29	55973	hgsc.bcm.edu	37	7	107254121	107254122	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	BCAP29	NM_001008405	exon7	c.713_714insA	p.L238fs	.	.	199	16	72	0	.	136
BCLAF1	9774	bcgsc.ca	37	6	136582401	136582401	+	Splice_Site	SNP	A	A	T	rs62431282		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	BCLAF1	NM_014739	exon13	c.2757+2T>A	.	.	.	233	29	108	2	.	228
BEND3P3	650623	broad.mit.edu	37	10	81444960	81444960	+	RNA	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	29	6	9	0	.	.
C16orf3	750	hgsc.bcm.edu	37	16	90095597	90095598	+	In_Frame_Ins	INS	-	-	GGGGCAGGCTGC	rs71137702	alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	C16orf3	NM_001214	exon1	c.154_155insGCAGCCTGCCCC	p.I52delinsAACPI	.	.	54	17	38	0	GGGGCAGCCTACGGGGCAGGCTGC|1.000;|0.000	90
C1orf74	148304	bcgsc.ca	37	1	209956564	209956564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	C1orf74	NM_152485	exon2	c.T416C	p.V139A	.	.	130	5	37	0	.	91
C2orf62	375307	bcgsc.ca	37	2	219222266	219222266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	C2orf62	NM_198559	exon3	c.A128G	p.E43G	.	.	42	18	38	0	.	68
C2orf62	375307	hgsc.bcm.edu	37	2	219222270	219222288	+	Frame_Shift_Del	DEL	ACAGATGCTGTTCTTCTCT	ACAGATGCTGTTCTTCTCT	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	ACAGATGCTGTTCTTCTCT	ACAGATGCTGTTCTTCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	C2orf62	NM_198559	exon3	c.132_150del	p.44_50del	.	.	43	0	38	0	.	68
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	219222268	219222286	+	Frame_Shift_Del	DEL	CTACAGATGCTGTTCTTCT	CTACAGATGCTGTTCTTCT	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CTACAGATGCTGTTCTTCT	CTACAGATGCTGTTCTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	C2orf62	NM_198559	exon3	c.130_148del	p.44_50del	.	.	41	16	37	0	.	68
C4A	720	ucsc.edu	37	6	31964228	31964228	+	Silent	SNP	A	A	G	rs17874654	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	C4A	NM_007293	exon28	c.G3527G	p.S1176S	.	.	121	23	43	0	A|0.017;G|0.983	44
CADM1	23705	hgsc.bcm.edu;broad.mit.edu	37	11	115047284	115047285	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CADM1	NM_014333	exon10	c.1239_1240insG	p.G413fs	.	.	547	37	141	0	.	92
CAMK2A	815	bcgsc.ca	37	5	149669173	149669173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CAMK2A	NM_171825	exon1	c.T16C	p.C6R	.	.	91	4	44	0	.	333
CAMSAP1	157922	broad.mit.edu	37	9	138716670	138716670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CAMSAP1	NM_015447	exon9	c.A1280G	p.K427R	.	.	201	5	88	0	.	92
CATSPER2P1	440278	broad.mit.edu	37	15	44028612	44028612	+	RNA	SNP	T	T	C	rs2447205		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	121	19	35	0	.	.
CCDC105	126402	hgsc.bcm.edu	37	19	15133812	15133813	+	In_Frame_Ins	INS	-	-	TGCGCC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC105	NM_173482	exon7	c.1381_1382insTGCGCC	p.V461delinsVRL	.	.	64	14	29	0	.	91
CCDC144NL	339184	bcgsc.ca	37	17	20768788	20768788	+	Missense_Mutation	SNP	G	G	T	rs78365129	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC144NL	NM_001004306	exon4	c.C606A	p.H202Q	.	.	111	23	60	0	G|0.687;T|0.313	90
CCDC144NL	339184	broad.mit.edu;bcgsc.ca	37	17	20768756	20768756	+	Frame_Shift_Del	DEL	T	T	-	rs139187048	by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC144NL	NM_001004306	exon4	c.638delA	p.K213fs	.	.	119	34	56	0	.	90
CCDC168	643677	hgsc.bcm.edu;ucsc.edu	37	13	103390332	103390332	+	Missense_Mutation	SNP	C	C	T	rs200872789		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001146197	exon4	c.G12715A	p.E4239K	.	.	924	375	166	0	.	.
CCDC171	203238	broad.mit.edu	37	9	15657133	15657133	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_173550	exon8	c.T831C	p.T277T	.	.	466	7	140	0	.	.
CCDC174	51244	bcgsc.ca	37	3	14708348	14708348	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_016474	exon7	c.T618C	p.S206S	.	.	335	9	119	0	.	.
CCDC38	120935	hgsc.bcm.edu	37	12	96292432	96292432	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC38	NM_182496	exon6	c.447delA	p.K149fs	.	.	1033	6	187	2	.	91
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	80115731	80115731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC57	NM_198082	exon14	c.C2134T	p.Q712X	.	.	49	28	25	0	.	24
CCDC73	493860	hgsc.bcm.edu	37	11	32635950	32635951	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC73	NM_001008391	exon16	c.1914_1915insA	p.E638fs	.	.	382	0	118	0	.	91
CCDC74A	90557	ucsc.edu	37	2	132288362	132288362	+	Missense_Mutation	SNP	T	T	C	rs2599971	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC74A	NM_001258304	exon3	c.T632C	p.M211T	.	.	249	93	103	26	T|0.250;C|0.750	69
CCT6P3	643180	broad.mit.edu	37	7	64531401	64531401	+	RNA	SNP	C	C	T	rs184482762	by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	57	7	30	0	C|0.998;T|0.002	.
CDC27	996	bcgsc.ca	37	17	45234626	45234626	+	Silent	SNP	T	T	G	rs76359747	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDC27	NM_001114091	exon6	c.A600C	p.T200T	.	.	296	72	89	4	T|0.500;G|0.500	291
CDC27	996	broad.mit.edu;bcgsc.ca	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDC27	NM_001114091	exon6	c.G601A	p.V201I	.	.	297	11	89	0	.	291
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85960359	85960359	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDHR1	NM_001171971	exon6	c.C441T	p.D147D	.	.	123	62	76	0	.	91
CDHR2	54825	bcgsc.ca	37	5	176016377	176016377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDHR2	NM_017675	exon23	c.A3055G	p.T1019A	.	.	83	5	43	0	.	70
CDHR5	53841	bcgsc.ca	37	11	618860	618860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDHR5	NM_021924	exon13	c.A1699G	p.S567G	.	.	349	48	93	2	.	90
CDHR5	53841	bcgsc.ca	37	11	618896	618896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDHR5	NM_021924	exon13	c.G1663A	p.V555M	.	.	365	17	90	1	.	90
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40085553	40085553	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDK13	NM_003718	exon6	c.T2472C	p.G824G	.	.	154	74	60	0	.	548
CDO1	1036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115146946	115146946	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDO1	NM_001801	exon3	c.A315G	p.T105T	.	.	302	120	106	0	.	154
CENPE	1062	broad.mit.edu	37	4	104080341	104080341	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CENPE	NM_001813	exon22	c.G2427A	p.Q809Q	.	.	555	7	138	0	.	277
CEP170	9859	broad.mit.edu	37	1	243333048	243333048	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CEP170	NM_014812	exon12	c.A1725G	p.T575T	.	.	962	23	139	0	.	93
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	440785	440785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CHL1	NM_006614	exon26	c.A3339T	p.L1113F	.	.	456	196	120	0	.	583
CHMP4A	29082	bcgsc.ca	37	14	24679568	24679568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CHMP4A	NM_014169	exon5	c.T725C	p.L242P	.	.	73	4	51	0	.	92
CLASP2	23122	bcgsc.ca	37	3	33661161	33661161	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CLASP2	NM_015097	exon12	c.T1254C	p.N418N	.	.	78	4	41	0	.	93
CLCA2	9635	bcgsc.ca	37	1	86900242	86900242	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CLCA2	NM_006536	exon6	c.A786G	p.A262A	.	.	137	6	51	0	.	155
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71047619	71047619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CLEC4F	NM_173535	exon1	c.C37A	p.Q13K	.	.	100	49	54	0	.	95
CLN6	54982	bcgsc.ca	37	15	68503647	68503647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CLN6	NM_017882	exon5	c.T496C	p.F166L	.	.	85	4	45	0	.	91
CLTCL1	8218	bcgsc.ca	37	22	19220777	19220777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CLTCL1	NM_001835	exon9	c.T1433C	p.V478A	.	.	152	7	66	0	.	230
CNOT6L	246175	broad.mit.edu	37	4	78641756	78641756	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CNOT6L	NM_144571	exon12	c.C1497T	p.N499N	.	.	457	16	117	0	.	67
CNTNAP3B	728577	broad.mit.edu	37	9	43828112	43828112	+	Silent	SNP	A	A	G	rs4879137		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001201380	exon9	c.A1368G	p.V456V	.	.	485	19	138	0	.	.
COL19A1	1310	broad.mit.edu	37	6	70856557	70856557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	COL19A1	NM_001858	exon26	c.G1777A	p.D593N	.	.	221	5	109	0	.	156
COX10	1352	mdanderson.org	37	17	14095348	14095348	+	Silent	SNP	G	G	A	rs34362247	byfrequency;alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	COX10	NM_001303	exon6	c.G738A	p.P246P	.	.	190	12	80	0	T|0.054;A|0.946	226
COX3	5742	broad.mit.edu	37	MT	9329	9329	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	ENST00000362079	exon1	c.G123A	p.T41T	.	.	243	17	24	0	.	.
COX4I2	84701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	30227827	30227827	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	COX4I2	NM_032609	exon3	c.C174T	p.N58N	.	.	22	11	15	0	.	227
CPAMD8	27151	bcgsc.ca	37	19	17007070	17007070	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CPAMD8	NM_015692	exon41	c.T5484C	p.P1828P	.	.	51	5	54	2	.	141
CPSF7	79869	bcgsc.ca	37	11	61183172	61183172	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CPSF7	NM_024811	exon7	c.T1179C	p.S393S	.	.	139	6	58	0	.	90
CR1	1378	broad.mit.edu	37	1	207787831	207787831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CR1	NM_000651	exon40	c.G6658T	p.E2220X	.	.	503	8	90	0	.	93
CRIPAK	285464	bcgsc.ca	37	4	1388446	1388446	+	Silent	SNP	C	C	A	rs3210561	byfrequency;alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CRIPAK	NM_175918	exon1	c.C147A	p.P49P	.	.	163	22	74	0	C|0.500;G|0.500	90
CRIPAK	285464	bcgsc.ca	37	4	1388666	1388666	+	Missense_Mutation	SNP	C	C	T	rs9760377	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CRIPAK	NM_175918	exon1	c.C367T	p.R123W	.	.	72	22	33	0	C|0.999;T|0.001	90
CRIPAK	285464	bcgsc.ca	37	4	1388697	1388697	+	Missense_Mutation	SNP	C	C	T	rs113316888	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CRIPAK	NM_175918	exon1	c.C398T	p.A133V	.	.	75	34	23	0	C|0.982;T|0.018	90
CRIPAK	285464	bcgsc.ca	37	4	1389448	1389448	+	Silent	SNP	T	T	C	rs150310069	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CRIPAK	NM_175918	exon1	c.T1149C	p.P383P	.	.	209	18	87	5	T|1.000;C|0.000	90
CRNN	49860	hgsc.bcm.edu	37	1	152382699	152382699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CRNN	NM_016190	exon3	c.G859A	p.A287T	.	.	1688	90	184	0	.	93
CSAG1	158511	broad.mit.edu	37	X	151908850	151908850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CSAG1	NM_153478	exon4	c.A89G	p.D30G	.	.	1148	18	161	0	.	131
CSMD1	64478	broad.mit.edu	37	8	2813178	2813178	+	Silent	SNP	T	T	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CSMD1	NM_033225	exon64	c.A9927T	p.A3309A	.	.	142	6	95	0	.	86
CTBP1-AS1	92070	hgsc.bcm.edu	37	4	1244521	1244523	+	RNA	DEL	ATC	ATC	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	71	0	43	0	.	.
CTNNB1	1499	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97G	p.S33A	.	.	239	105	89	0	.	24361
CTU2	348180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88776355	88776355	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CTU2	NM_001012759	exon3	c.C153T	p.F51F	.	.	102	44	62	0	.	23
CUTC	51076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101503802	101503802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CUTC	NM_015960	exon5	c.C412T	p.R138C	.	.	174	85	62	0	.	153
CYP20A1	57404	hgsc.bcm.edu	37	2	204150380	204150380	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP20A1	NM_177538	exon9	c.896delA	p.Q299fs	.	.	383	13	123	3	.	90
CYP2B6	1555	ucsc.edu	37	19	41515263	41515263	+	Missense_Mutation	SNP	A	A	G	rs28399497	bycluster;byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP2B6	NM_000767	exon5	c.A785G	p.K262R	.	.	256	78	87	12	A|0.731;G|0.269	92
CYP39A1	51302	bcgsc.ca	37	6	46598807	46598807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP39A1	NM_016593	exon6	c.A733G	p.T245A	.	.	111	5	45	0	.	91
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607278	46607278	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP39A1	NM_016593	exon3	c.G441A	p.L147L	.	.	336	138	108	0	.	91
CYP4F3	4051	broad.mit.edu;ucsc.edu	37	19	15760906	15760906	+	Silent	SNP	C	C	T	rs61739996		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP4F3	NM_001199209	exon7	c.C831T	p.T277T	.	.	100	39	31	0	C|0.014;T|0.986	93
DDX11	1663	hgsc.bcm.edu	37	12	31255209	31255209	+	Silent	SNP	G	G	A	rs71447572		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DDX11	NM_030653	exon22	c.G2235A	p.V745V	.	.	236	12	105	0	G|0.500;A|0.500	229
DHX37	57647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125453127	125453127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DHX37	NM_032656	exon10	c.G1361T	p.G454V	.	.	32	16	19	0	.	227
DLG4	1742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7097812	7097812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DLG4	NM_001365	exon14	c.C1433T	p.A478V	.	.	45	30	35	0	.	24
DNAH14	127602	bcgsc.ca	37	1	225488598	225488598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DNAH14	NM_001373	exon54	c.A8218G	p.I2740V	.	.	233	7	58	0	.	23
DNAH5	1767	bcgsc.ca	37	5	13721120	13721120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DNAH5	NM_001369	exon71	c.A12268G	p.T4090A	.	.	137	5	57	1	.	182
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85043137	85043137	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DNAH6	NM_001370	exon76	c.G12303A	p.K4101K	.	.	228	85	75	0	.	69
DNAJC10	54431	bcgsc.ca	37	2	183582849	183582849	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DNAJC10	NM_001271581	exon3	c.A36G	p.R12R	.	.	143	5	69	0	.	273
DPCR1	135656	broad.mit.edu	37	6	30918020	30918020	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DPCR1	NM_080870	exon2	c.G1779A	p.K593K	.	.	459	9	110	1	.	90
DPP9	91039	bcgsc.ca	37	19	4703954	4703954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DPP9	NM_139159	exon7	c.T713C	p.L238P	.	.	73	4	40	0	.	91
DPY19L3	147991	broad.mit.edu	37	19	32899192	32899192	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DPY19L3	NM_001172774	exon2	c.A33G	p.R11R	.	.	145	5	75	0	.	72
DSN1	79980	bcgsc.ca	37	20	35399519	35399519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DSN1	NM_001145315	exon3	c.A112G	p.T38A	.	.	119	5	63	0	.	92
DSPP	1834	bcgsc.ca	37	4	88536609	88536609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DSPP	NM_014208	exon5	c.A2795G	p.N932S	.	.	375	40	87	1	.	90
DSPP	1834	bcgsc.ca	37	4	88536955	88536955	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DSPP	NM_014208	exon5	c.T3141C	p.D1047D	.	.	195	17	56	0	.	90
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DSPP	NM_014208	exon5	c.C3456T	p.D1152D	.	.	199	19	49	0	.	90
DSPP	1834	hgsc.bcm.edu	37	4	88536764	88536781	+	In_Frame_Del	DEL	GATAGCAGTGACAGCAGT	GATAGCAGTGACAGCAGT	-	rs200486992	alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	GATAGCAGTGACAGCAGT	GATAGCAGTGACAGCAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DSPP	NM_014208	exon5	c.2950_2967del	p.984_989del	.	.	312	0	80	0	.	90
DSPP	1834	hgsc.bcm.edu;broad.mit.edu	37	4	88536644	88536652	+	In_Frame_Del	DEL	AGCAGTGAT	AGCAGTGAT	-	rs200486992		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	AGCAGTGAT	AGCAGTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DSPP	NM_014208	exon5	c.2830_2838del	p.944_946del	.	.	353	25	81	0	.	90
DYX1C1	161582	hgsc.bcm.edu	37	15	55759241	55759242	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DYX1C1	NM_001033560	exon5	c.524_525insA	p.I175fs	.	.	650	0	155	0	.	91
EDNRA	1909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148457097	148457097	+	Silent	SNP	G	G	A	rs200693894		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EDNRA	NM_001957	exon5	c.G816A	p.A272A	.	.	297	127	109	0	.	586
EFCAB14	9813	broad.mit.edu;bcgsc.ca	37	1	47144307	47144307	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_014774	exon11	c.T1314C	p.D438D	.	.	89	6	47	0	.	.
EFEMP2	30008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65638628	65638628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EFEMP2	NM_016938	exon4	c.G367T	p.D123Y	.	.	58	20	23	0	.	91
ELTD1	64123	broad.mit.edu	37	1	79356885	79356885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ELTD1	NM_022159	exon15	c.A2027G	p.Y676C	.	.	901	11	134	0	.	24
EMB	133418	broad.mit.edu	37	5	49695723	49695723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EMB	NM_198449	exon8	c.A936G	p.I312M	.	.	829	7	155	1	.	90
EML1	2009	bcgsc.ca	37	14	100387144	100387144	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EML1	NM_001008707	exon18	c.A1896G	p.T632T	.	.	56	4	60	0	.	138
ENPP3	5169	bcgsc.ca	37	6	132059215	132059215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ENPP3	NM_005021	exon23	c.A2212G	p.T738A	.	.	75	4	56	0	.	95
EP300	2033	bcgsc.ca	37	22	41556708	41556708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EP300	NM_001429	exon20	c.A3653G	p.D1218G	.	.	191	11	84	0	.	2011
EXD3	54932	broad.mit.edu;mdanderson.org	37	9	140201464	140201464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EXD3	NM_017820	exon22	c.G2569T	p.E857X	.	.	34	10	33	0	.	90
F5	2153	broad.mit.edu	37	1	169510502	169510502	+	Missense_Mutation	SNP	G	G	T	rs140018525	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	F5	NM_000130	exon13	c.C3826A	p.L1276I	.	.	1078	13	164	0	G|0.999;T|0.001	157
FAM120B	84498	bcgsc.ca	37	6	170627739	170627739	+	Missense_Mutation	SNP	G	G	T	rs17860761	byfrequency;alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FAM120B	NM_032448	exon2	c.G1261T	p.A421S	.	.	91	5	62	0	G|0.930;C|0.070	91
FAM153A	285596	ucsc.edu	37	5	177163580	177163580	+	Missense_Mutation	SNP	A	A	G	rs2014864	bycluster;byfrequency;bysubmitter;by2hit2allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FAM153A	NM_173663	exon11	c.T433C	p.F145L	.	.	617	222	146	32	A|0.500;G|0.500	23
FAM157A	728262	broad.mit.edu	37	3	197894694	197894694	+	Missense_Mutation	SNP	G	G	A	rs61793575		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001145248	exon5	c.G1036A	p.A346T	.	.	1228	35	159	0	.	.
FAM171A1	221061	broad.mit.edu	37	10	15296781	15296781	+	Silent	SNP	G	G	A	rs142231326		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FAM171A1	NM_001010924	exon4	c.C516T	p.A172A	.	.	102	5	51	0	G|1.000;A|0.000	138
FAM182A	284800	bcgsc.ca	37	20	26061960	26061960	+	RNA	SNP	T	T	C	rs74714331	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	223	56	93	15	.	.
FAM182A	284800	ucsc.edu;bcgsc.ca	37	20	26061922	26061922	+	RNA	SNP	T	T	G	rs75066699		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	173	37	69	5	T|0.613;G|0.387	.
FAM184A	79632	bcgsc.ca	37	6	119345874	119345874	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FAM184A	NM_024581	exon2	c.A264G	p.R88R	.	.	221	7	131	0	.	519
FAM22G	441457	ucsc.edu	37	9	99694087	99694087	+	Missense_Mutation	SNP	T	T	G	rs71231903	bycluster;byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FAM22G	NM_001045477	exon2	c.T100G	p.S34A	.	.	142	38	60	15	T|0.500;G|0.500	69
FAM35A	54537	broad.mit.edu	37	10	88911830	88911830	+	Missense_Mutation	SNP	C	C	A	rs3129516		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FAM35A	NM_019054	exon3	c.C719A	p.T240K	.	.	256	5	68	0	.	94
FAM65A	79567	bcgsc.ca	37	16	67576704	67576704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FAM65A	NM_001193523	exon13	c.T2075C	p.I692T	.	.	160	12	46	1	.	92
FBLN5	10516	bcgsc.ca	37	14	92347715	92347715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FBLN5	NM_006329	exon9	c.A910G	p.T304A	.	.	93	5	76	1	.	134
FCGBP	8857	ucsc.edu	37	19	40368733	40368733	+	Silent	SNP	G	G	C	rs61732623	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FCGBP	NM_003890	exon28	c.C12615G	p.L4205L	.	.	92	13	45	0	G|0.281;C|0.719	98
FCGR2B	2213	ucsc.edu	37	1	161645052	161645052	+	Missense_Mutation	SNP	C	C	T	rs28651835		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FCGR2B	NM_004001	exon6	c.C766T	p.P256S	.	.	260	59	53	0	C|0.989;T|0.011	226
FCGR3B	2215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161596059	161596059	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FCGR3B	NM_001244753	exon4	c.T561G	p.F187L	.	.	199	160	100	0	.	22
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72859044	72859044	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FDXR	NM_001258012	exon12	c.C1500G	p.D500E	.	.	54	27	33	0	.	226
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154960711	154960711	+	Missense_Mutation	SNP	A	A	C	rs150372864	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FLAD1	NM_025207	exon2	c.A503C	p.N168T	.	.	257	73	81	0	A|1.000;G|0.000;T|0.000	93
FLG	2312	broad.mit.edu	37	1	152280084	152280084	+	Silent	SNP	G	G	A	rs200015722		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FLG	NM_002016	exon3	c.C7278T	p.S2426S	.	.	645	6	125	0	G|0.999;A|0.001	106
FLG	2312	ucsc.edu	37	1	152276626	152276626	+	Missense_Mutation	SNP	G	G	C	rs3126075		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FLG	NM_002016	exon3	c.C10736G	p.T3579R	.	.	956	271	145	40	G|0.716;C|0.284	106
FLG2	388698	bcgsc.ca	37	1	152324182	152324182	+	Missense_Mutation	SNP	G	G	C	rs201561111		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FLG2	NM_001014342	exon3	c.C6080G	p.A2027G	.	.	323	45	75	2	.	151
FLG2	388698	bcgsc.ca	37	1	152324262	152324262	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FLG2	NM_001014342	exon3	c.A6000G	p.Q2000Q	.	.	373	47	78	0	.	151
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172098773	172098773	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FNDC3B	NM_001135095	exon25	c.T3193C	p.L1065L	.	.	101	31	51	0	.	155
FOLH1	2346	ucsc.edu	37	11	49207315	49207315	+	Silent	SNP	A	A	G	rs182169	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FOLH1	NM_004476	exon6	c.T732C	p.D244D	.	.	185	80	54	16	T|0.456;G|0.072	579
FREM2	341640	bcgsc.ca	37	13	39430311	39430311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FREM2	NM_207361	exon12	c.T6974C	p.V2325A	.	.	74	4	51	0	.	100
FRG1	2483	bcgsc.ca	37	4	190878609	190878609	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRG1	NM_004477	exon6	c.G489A	p.G163G	.	.	1105	40	145	2	.	90
FRG1B	284802	broad.mit.edu;bcgsc.ca	37	20	29625905	29625905	+	RNA	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRG1B	.	.	.	.	.	.	541	15	98	1	.	22
FRG1B	284802	bcgsc.ca	37	20	29623231	29623231	+	RNA	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRG1B	.	.	.	.	.	.	869	32	175	2	.	22
FRG1B	284802	bcgsc.ca	37	20	29625950	29625950	+	RNA	SNP	G	G	A	rs78096528	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRG1B	.	.	.	.	.	.	523	66	79	1	G|0.700;A|0.300	22
FRG1B	284802	bcgsc.ca	37	20	29628278	29628278	+	RNA	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRG1B	.	.	.	.	.	.	2645	88	151	3	.	22
FRG1B	284802	bcgsc.ca;mdanderson.org	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRG1B	.	.	.	.	.	.	958	73	187	5	.	22
FRG1B	284802	hgsc.bcm.edu	37	20	29625932	29625935	+	RNA	DEL	GGCA	GGCA	-	rs144031280	alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	GGCA	GGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRG1B	.	.	.	.	.	.	463	0	67	0	.	22
FRG1B	284802	ucsc.edu	37	20	29625935	29625935	+	RNA	SNP	A	A	G	rs62198354	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRG1B	.	.	.	.	.	.	449	307	65	0	A|0.417;G|0.583	22
FRS3	10817	bcgsc.ca	37	6	41739115	41739115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FRS3	NM_006653	exon7	c.A721G	p.K241E	.	.	63	4	43	0	.	92
GALNT4	8693	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	89916794	89916794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_003774	exon1	c.T1533G	p.N511K	.	.	169	83	59	0	.	.
GALNT9	50614	ucsc.edu	37	12	132824461	132824461	+	Splice_Site	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GALNT9	NM_001122636	exon7	c.1077+2T>G	.	.	.	78	14	70	5	.	90
GBP4	115361	ucsc.edu	37	1	89652078	89652078	+	Missense_Mutation	SNP	A	A	T	rs608339	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GBP4	NM_052941	exon10	c.T1645A	p.L549M	.	.	559	181	132	3	A|0.658;T|0.342	90
GBP4	115361	ucsc.edu	37	1	89652094	89652094	+	Silent	SNP	G	G	A	rs1142887	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GBP4	NM_052941	exon10	c.C1629T	p.A543A	.	.	550	162	136	3	G|0.527;A|0.473	90
GGTLC2	91227	hgsc.bcm.edu	37	22	22989321	22989321	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GGTLC2	NM_199127	exon2	c.274delC	p.P92fs	.	.	481	5	142	2	.	23
GLE1	2733	bcgsc.ca	37	9	131286124	131286124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GLE1	NM_001499	exon6	c.A896G	p.E299G	.	.	77	4	47	0	.	22
GNA13	10672	broad.mit.edu	37	17	63052496	63052496	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GNA13	NM_006572	exon1	c.C216T	p.H72H	.	.	63	3	48	0	.	227
GNA15	2769	ucsc.edu	37	19	3150145	3150145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GNA15	NM_002068	exon3	c.T347C	p.V116A	.	.	52	5	29	0	.	229
GPR107	57720	bcgsc.ca	37	9	132841936	132841936	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GPR107	NM_001136557	exon5	c.T414C	p.A138A	.	.	57	4	28	0	.	91
GPR108	56927	bcgsc.ca	37	19	6730359	6730359	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GPR108	NM_001080452	exon18	c.A1596G	p.K532K	.	.	104	5	59	0	.	68
GPR137B	7107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236368456	236368456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GPR137B	NM_003272	exon6	c.T997A	p.F333I	.	.	151	56	47	0	.	90
HCAR3	8843	ucsc.edu	37	12	123200527	123200527	+	Missense_Mutation	SNP	T	T	C	rs2454726	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HCAR3	NM_006018	exon1	c.A758G	p.H253R	.	.	144	33	41	0	T|0.500;C|0.500	2
HEATR5B	54497	bcgsc.ca	37	2	37302715	37302715	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HEATR5B	NM_019024	exon5	c.A510G	p.A170A	.	.	211	6	82	0	.	142
HECTD1	25831	bcgsc.ca	37	14	31647256	31647256	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HECTD1	NM_015382	exon3	c.T345C	p.T115T	.	.	168	7	61	0	.	570
HERC2P2	400322	ucsc.edu	37	15	23300033	23300033	+	RNA	SNP	T	T	C	rs1058831	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	213	33	86	9	T|0.716;C|0.284	.
HESX1	8820	hgsc.bcm.edu	37	3	57232250	57232250	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HESX1	NM_003865	exon4	c.533delA	p.N178fs	.	.	710	19	163	1	.	227
HLA-B	3106	bcgsc.ca	37	6	31324586	31324586	+	Silent	SNP	C	C	T	rs151341145	alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HLA-B	NM_005514	exon2	c.G222A	p.P74P	.	.	163	19	78	0	.	90
HLA-B	3106	bcgsc.ca	37	6	31324643	31324643	+	Silent	SNP	G	G	C	rs1050517	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HLA-B	NM_005514	exon2	c.C165G	p.T55T	.	.	97	6	47	0	G|0.419;C|0.581	90
HLA-C	3107	bcgsc.ca	37	6	31237835	31237835	+	Missense_Mutation	SNP	A	A	T	rs1065600	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HLA-C	NM_002117	exon5	c.T923A	p.I308N	.	.	75	15	32	0	A|0.384;T|0.616	90
HLA-DQA1	3117	bcgsc.ca	37	6	32609299	32609299	+	Missense_Mutation	SNP	A	A	C	rs1064944	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HLA-DQA1	NM_002122	exon2	c.A295C	p.M99L	.	.	73	16	21	0	A|0.848;C|0.016;G|0.137	90
HLA-DQA1	3117	bcgsc.ca	37	6	32609312	32609312	+	Missense_Mutation	SNP	A	A	C	rs1129808	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HLA-DQA1	NM_002122	exon2	c.A308C	p.Y103S	.	.	64	15	20	0	A|0.542;C|0.458	90
HLA-DRB1	3123	bcgsc.ca	37	6	32549356	32549356	+	Silent	SNP	T	T	C	rs34555743	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HLA-DRB1	NM_002124	exon3	c.A630G	p.T210T	.	.	126	45	34	0	T|0.900;C|0.100	1
HLA-DRB1	3123	bcgsc.ca	37	6	32557423	32557423	+	Silent	SNP	G	G	T	rs9256943	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HLA-DRB1	NM_002124	exon1	c.C97A	p.R33R	.	.	185	30	76	17	G|0.691;T|0.309	1
HNRNPL	3191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39328060	39328060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HNRNPL	NM_001533	exon12	c.C1675G	p.L559V	.	.	172	68	69	0	.	22
HPS5	11234	broad.mit.edu	37	11	18327754	18327754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HPS5	NM_181507	exon7	c.A752G	p.D251G	.	.	191	5	69	0	.	133
HRC	3270	hgsc.bcm.edu	37	19	49657889	49657889	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HRC	NM_002152	exon1	c.A606G	p.E202E	.	.	171	10	72	0	.	91
HSPA5	3309	broad.mit.edu	37	9	128001425	128001425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HSPA5	NM_005347	exon5	c.A791G	p.E264G	.	.	474	8	144	0	.	230
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123508467	123508467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HYAL4	NM_012269	exon3	c.C140A	p.P47H	.	.	162	70	60	0	.	91
IFNA17	3451	ucsc.edu	37	9	21227622	21227622	+	Missense_Mutation	SNP	A	A	C	rs9298814	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IFNA17	NM_021268	exon1	c.T551G	p.I184R	.	.	905	297	162	10	A|0.719;C|0.281	90
IFNA17	3451	ucsc.edu	37	9	21227651	21227651	+	Silent	SNP	A	A	G	rs7025879		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IFNA17	NM_021268	exon1	c.T522C	p.S174S	.	.	841	273	145	12	A|0.753;G|0.247	90
IFNA17	3451	ucsc.edu	37	9	21227821	21227821	+	Missense_Mutation	SNP	T	T	C	rs141849715	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IFNA17	NM_021268	exon1	c.A352G	p.N118D	.	.	652	211	131	25	T|0.997;C|0.003	90
IFNL3	282617	ucsc.edu	37	19	39735106	39735106	+	Missense_Mutation	SNP	T	T	C	rs8103142	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_172139	exon2	c.A209G	p.K70R	.	.	103	45	49	13	T|0.752;C|0.248	.
IFT74	80173	bcgsc.ca	37	9	26978146	26978146	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IFT74	NM_001099222	exon3	c.A141G	p.R47R	.	.	110	5	58	0	.	515
IGF2R	3482	bcgsc.ca	37	6	160494243	160494243	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IGF2R	NM_000876	exon34	c.4691-2A>G	.	.	.	157	5	121	0	.	118
IKBKAP	8518	bcgsc.ca	37	9	111679859	111679859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IKBKAP	NM_003640	exon9	c.T832C	p.F278L	.	.	141	5	62	0	.	318
IL7R	3575	hgsc.bcm.edu	37	5	35874637	35874637	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IL7R	NM_002185	exon6	c.793delA	p.K265fs	.	.	848	9	167	1	.	157
IQCA1	79781	bcgsc.ca	37	2	237396664	237396664	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IQCA1	NM_001270585	exon4	c.T648C	p.A216A	.	.	158	5	69	0	.	23
IQCK	124152	bcgsc.ca	37	16	19745033	19745033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IQCK	NM_153208	exon4	c.A260G	p.E87G	.	.	81	4	42	0	.	91
IQGAP2	10788	bcgsc.ca	37	5	75973069	75973069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	IQGAP2	NM_006633	exon28	c.T3554C	p.V1185A	.	.	71	5	31	0	.	96
ITGA10	8515	hgsc.bcm.edu	37	1	145534989	145534990	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ITGA10	NM_003637	exon15	c.1892_1893insG	p.V631fs	.	.	172	10	54	0	.	231
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33657110	33657110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ITPR3	NM_002224	exon50	c.C6790A	p.L2264I	.	.	75	32	57	0	.	1085
KCNJ18	100134444	bcgsc.ca	37	17	21318969	21318969	+	Silent	SNP	C	C	T	rs79666990	bycluster;byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001194958	exon3	c.C315T	p.I105I	.	.	179	57	66	4	C|0.625;T|0.375	.
KCNJ18	100134444	bcgsc.ca	37	17	21319488	21319488	+	Silent	SNP	C	C	T	rs77176173	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001194958	exon3	c.C834T	p.S278S	.	.	173	27	68	0	C|0.989;T|0.011	.
KCNN2	3781	bcgsc.ca	37	5	113831605	113831605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KCNN2	NM_021614	exon8	c.T1466C	p.M489T	.	.	152	5	66	0	.	92
KCTD3	51133	hgsc.bcm.edu	37	1	215747171	215747171	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KCTD3	NM_016121	exon2	c.126delT	p.S42fs	.	.	1105	26	154	3	.	93
KDM2A	22992	bcgsc.ca	37	11	67020272	67020272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KDM2A	NM_012308	exon18	c.T2876C	p.L959P	.	.	88	6	52	1	.	661
KIAA0355	9710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34791740	34791740	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KIAA0355	NM_014686	exon2	c.A362C	p.Q121P	.	.	64	21	33	0	.	91
KIF19	124602	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	72344027	72344027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KIF19	NM_153209	exon9	c.A1036G	p.I346V	.	.	17	11	12	0	.	90
KLHL2	11275	broad.mit.edu	37	4	166141109	166141109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KLHL2	NM_001161521	exon2	c.A62G	p.K21R	.	.	874	12	168	0	.	226
KRT33B	3884	hgsc.bcm.edu	37	17	39525703	39525703	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KRT33B	NM_002279	exon1	c.C300T	p.C100C	.	.	112	10	40	0	.	90
KRTAP10-10	353333	broad.mit.edu	37	21	46057961	46057961	+	Silent	SNP	C	C	T	rs138286608		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KRTAP10-10	NM_181688	exon1	c.C627T	p.C209C	.	.	234	16	76	2	C|1.000;T|0.000	90
KRTAP10-4	386672	ucsc.edu	37	21	45994302	45994302	+	Missense_Mutation	SNP	T	T	C	rs201123486		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KRTAP10-4	NM_198687	exon1	c.T667C	p.S223P	.	.	298	91	77	7	.	90
KRTAP10-6	386674	ucsc.edu	37	21	46011315	46011315	+	Missense_Mutation	SNP	G	G	A	rs139053807		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KRTAP10-6	NM_198688	exon1	c.C1051T	p.R351C	.	.	139	55	54	3	G|0.980;A|0.020	90
KRTAP10-6	386674	ucsc.edu	37	21	46011324	46011324	+	Missense_Mutation	SNP	T	T	C	rs1785472	by2hit2allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KRTAP10-6	NM_198688	exon1	c.A1042G	p.M348V	.	.	151	64	50	2	.	90
KRTAP10-9	386676	ucsc.edu;bcgsc.ca	37	21	46047354	46047354	+	Missense_Mutation	SNP	A	A	G	rs62220927	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_198690	exon1	c.A266G	p.Y89C	.	.	197	89	37	0	A|0.897;G|0.103	.
KRTAP19-1	337882	bcgsc.ca	37	21	31852483	31852483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KRTAP19-1	NM_181607	exon1	c.A154G	p.S52G	.	.	162	16	42	0	.	68
KRTAP4-9	100132386	hgsc.bcm.edu	37	17	39261945	39261945	+	Missense_Mutation	SNP	C	C	A	rs142970341	by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001146041	exon1	c.C305A	p.P102H	.	.	49	19	4	0	C|0.991;A|0.009	.
KRTAP5-10	387273	bcgsc.ca	37	11	71276888	71276888	+	Silent	SNP	T	T	C	rs12793134		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KRTAP5-10	NM_001012710	exon1	c.T255C	p.G85G	.	.	87	13	40	0	T|0.998;C|0.002	91
KRTAP5-4	387267	bcgsc.ca	37	11	1643049	1643049	+	Missense_Mutation	SNP	A	A	C	rs200027081		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001012709	exon1	c.T275G	p.V92G	.	.	101	43	54	5	.	.
LAMA1	284217	bcgsc.ca	37	18	7040232	7040232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LAMA1	NM_005559	exon10	c.A1265G	p.K422R	.	.	65	4	31	0	.	149
LARP7	51574	hgsc.bcm.edu	37	4	113570754	113570754	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LARP7	NM_001267039	exon11	c.1227delA	p.L409fs	.	.	443	11	151	3	.	93
LCA5L	150082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40800132	40800132	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LCA5L	NM_152505	exon4	c.A288G	p.K96K	.	.	303	123	109	0	.	22
LCE1E	353135	bcgsc.ca	37	1	152760096	152760096	+	Silent	SNP	A	A	T	rs115864544	bycluster;byfrequency;by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LCE1E	NM_178353	exon2	c.A321T	p.G107G	.	.	496	174	97	4	A|0.901;T|0.099	90
LCE1E	353135	ucsc.edu;bcgsc.ca	37	1	152760093	152760093	+	Silent	SNP	T	T	C	rs112600788	bycluster;byfrequency;by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LCE1E	NM_178353	exon2	c.T318C	p.C106C	.	.	466	185	94	2	T|0.901;C|0.099	90
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169685155	169685155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LCP2	NM_005565	exon16	c.T986C	p.L329S	.	.	154	63	75	0	.	23
LHX2	9355	broad.mit.edu	37	9	126794968	126794968	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LHX2	NM_004789	exon5	c.T1203C	p.T401T	.	.	154	5	93	0	.	90
LILRA3	11026	broad.mit.edu	37	19	54803133	54803133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LILRA3	NM_006865	exon4	c.T544C	p.F182L	.	.	228	6	89	0	.	91
LILRB1	10859	ucsc.edu	37	19	55148031	55148031	+	Silent	SNP	T	T	C	rs637515		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LILRB1	NM_001081637	exon14	c.T1740C	p.P580P	.	.	190	56	77	0	.	137
LILRB1	10859	ucsc.edu	37	19	55148043	55148043	+	Silent	SNP	T	T	C	rs28414191	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LILRB1	NM_001081637	exon14	c.T1752C	p.S584S	.	.	203	56	76	3	T|0.956;C|0.044	137
LILRB1	10859	ucsc.edu	37	19	55148045	55148045	+	Missense_Mutation	SNP	G	G	A	rs28409473	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LILRB1	NM_001081637	exon14	c.G1754A	p.G585E	.	.	203	53	76	4	G|0.958;A|0.042	137
LIMS1	3987	ucsc.edu	37	2	109293130	109293130	+	Silent	SNP	A	A	G	rs2438733	bycluster;byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LIMS1	NM_001193485	exon7	c.A900G	p.A300A	.	.	571	98	137	0	A|0.500;G|0.500	522
LOC440563	0	bcgsc.ca	37	1	13183109	13183109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001136561	exon2	c.A764G	p.D255G	.	.	508	29	135	0	.	.
LOC645166	0	broad.mit.edu	37	1	148933289	148933289	+	RNA	SNP	A	A	G	rs9729175	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NR_027355	exon3	c.236-2A>G	.	.	.	125	22	28	0	A|0.939;G|0.061	.
LOC650368	0	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	33	4	11	0	.	.
LOC728323	0	broad.mit.edu	37	2	243037115	243037115	+	RNA	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	382	10	106	0	.	.
MAGEC1	9947	bcgsc.ca	37	X	140993913	140993913	+	Silent	SNP	C	C	G	rs176041	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MAGEC1	NM_005462	exon4	c.C723G	p.S241S	.	.	257	151	27	7	C|0.664;G|0.336	133
MAGEC1	9947	hgsc.bcm.edu	37	X	140994346	140994346	+	Silent	SNP	C	C	T	rs60520741	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MAGEC1	NM_005462	exon4	c.C1156T	p.L386L	.	.	713	37	105	0	C|0.992;G|0.008	133
MAGEC1	9947	ucsc.edu	37	X	140994037	140994037	+	Missense_Mutation	SNP	C	C	A	rs176045	bycluster;byfrequency;by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MAGEC1	NM_005462	exon4	c.C847A	p.L283I	.	.	171	69	18	1	C|0.567;A|0.433	133
MAML2	84441	broad.mit.edu	37	11	95825263	95825263	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MAML2	NM_032427	exon2	c.G1932A	p.Q644Q	.	.	313	12	89	0	.	850
MCF2L2	23101	bcgsc.ca	37	3	183041064	183041064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MCF2L2	NM_015078	exon6	c.A562G	p.T188A	.	.	222	18	107	3	.	293
METTL15	196074	ucsc.edu	37	11	28134974	28134974	+	Missense_Mutation	SNP	C	C	A	rs60970073	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	METTL15	NM_152636	exon3	c.C93A	p.N31K	.	.	556	196	123	12	C|0.526;A|0.474	91
METTL2B	55798	hgsc.bcm.edu	37	7	128140982	128140983	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	METTL2B	NM_018396	exon8	c.942_943del	p.314_315del	.	.	251	0	78	0	.	23
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	128140983	128140984	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	METTL2B	NM_018396	exon8	c.943_944insT	p.V315fs	.	.	254	41	79	0	.	23
MKI67	4288	hgsc.bcm.edu	37	10	129904535	129904535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MKI67	NM_002417	exon13	c.5569delA	p.I1857fs	.	.	1125	18	175	2	.	519
MLH3	27030	hgsc.bcm.edu	37	14	75483904	75483905	+	Nonsense_Mutation	INS	-	-	CTATGGGAAGAAAGAATAACTTCAATTAGCAATATGA	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLH3	NM_001040108	exon13	c.4243_4244insTCATATTGCTAATTGAAGTTATTCTTTCTTCCCATAG	p.I1415_K1416delinsSYCX	.	.	80	0	36	0	.	228
MLL3	58508	bcgsc.ca	37	7	151935910	151935910	+	Missense_Mutation	SNP	C	C	T	rs4024419	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLL3	NM_170606	exon15	c.G2534A	p.G845E	.	.	169	37	63	0	C|0.967;T|0.033	1398
MLL3	58508	broad.mit.edu;bcgsc.ca	37	7	151962169	151962169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLL3	NM_170606	exon8	c.C1138T	p.R380C	.	.	367	16	134	0	.	1398
MLLT1	4298	ucsc.edu;bcgsc.ca	37	19	6270619	6270619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLLT1	NM_005934	exon2	c.T164C	p.L55P	.	.	51	4	36	0	.	658
MLXIP	22877	ucsc.edu	37	12	122622017	122622017	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLXIP	NM_014938	exon12	c.T2034C	p.S678S	.	.	43	4	30	0	.	92
MOGAT2	80168	bcgsc.ca	37	11	75438594	75438594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MOGAT2	NM_025098	exon3	c.T385C	p.S129P	.	.	158	6	81	0	.	228
MPDZ	8777	bcgsc.ca	37	9	13122113	13122113	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MPDZ	NM_003829	exon37	c.A5010G	p.R1670R	.	.	146	5	50	0	.	231
MRPS16	51021	ucsc.edu	37	10	75008880	75008880	+	RNA	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MRPS16	.	.	.	.	.	.	92	1	23	0	.	90
MS4A1	931	bcgsc.ca	37	11	60229885	60229885	+	Missense_Mutation	SNP	C	C	T	rs143807889		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MS4A1	NM_152866	exon3	c.C38T	p.P13L	.	.	165	6	66	0	C|0.998;T|0.002	525
MS4A6A	64231	bcgsc.ca	37	11	59939678	59939678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MS4A6A	NM_152852	exon8	c.T700C	p.S234P	.	.	122	5	50	0	.	90
MSH4	4438	bcgsc.ca	37	1	76349310	76349310	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MSH4	NM_002440	exon15	c.A1911G	p.R637R	.	.	121	5	37	0	.	660
MST1L	11223	broad.mit.edu	37	1	17083807	17083807	+	Missense_Mutation	SNP	T	T	C	rs9286084		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001271733	exon15	c.A1990G	p.T664A	.	.	293	82	82	0	.	.
MUC17	140453	hgsc.bcm.edu	37	7	100678724	100678724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC17	NM_001040105	exon3	c.C4027A	p.P1343T	.	.	198	10	66	0	.	95
MUC17	140453	ucsc.edu	37	7	100677378	100677378	+	Missense_Mutation	SNP	C	C	A	rs143956720	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC17	NM_001040105	exon3	c.C2681A	p.T894K	.	.	217	49	60	3	C|0.958;A|0.042	95
MUC17	140453	ucsc.edu	37	7	100677625	100677625	+	Silent	SNP	G	G	A	rs115078078	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC17	NM_001040105	exon3	c.G2928A	p.S976S	.	.	327	61	96	8	G|0.964;A|0.036	95
MUC21	394263	bcgsc.ca	37	6	30955143	30955143	+	Silent	SNP	G	G	A	rs41288705	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC21	NM_001010909	exon2	c.G1191A	p.T397T	.	.	158	33	46	1	G|0.967;A|0.033	92
MUC21	394263	bcgsc.ca	37	6	30955154	30955154	+	Missense_Mutation	SNP	G	G	A	rs41284501	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC21	NM_001010909	exon2	c.G1202A	p.G401E	.	.	167	23	45	0	G|0.998;A|0.002	92
MUC21	394263	bcgsc.ca	37	6	30955182	30955182	+	Silent	SNP	C	C	T	rs41284503	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC21	NM_001010909	exon2	c.C1230T	p.S410S	.	.	173	28	45	0	C|0.995;T|0.005	92
MUC21	394263	ucsc.edu	37	6	30954558	30954558	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC21	NM_001010909	exon2	c.A606G	p.T202T	.	.	254	27	75	3	.	92
MUC2	4583	bcgsc.ca	37	11	1092554	1092554	+	Missense_Mutation	SNP	T	T	C	rs199676812		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC2	NM_002457	exon30	c.T4373C	p.I1458T	.	.	271	39	54	0	.	90
MUC2	4583	bcgsc.ca	37	11	1093644	1093644	+	Silent	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC2	NM_002457	exon30	c.G5463C	p.T1821T	.	.	130	15	67	1	.	90
MUC4	4585	bcgsc.ca	37	3	195512674	195512674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.T5777C	p.L1926P	.	.	188	38	53	2	.	90
MUC4	4585	bcgsc.ca	37	3	195512699	195512699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.G5752A	p.A1918T	.	.	202	21	50	0	.	90
MUC4	4585	broad.mit.edu	37	3	195511033	195511033	+	Missense_Mutation	SNP	A	A	G	rs200807157		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.T7418C	p.V2473A	.	.	219	47	45	1	.	90
MUC4	4585	broad.mit.edu	37	3	195511316	195511316	+	Missense_Mutation	SNP	A	A	T	rs79528160		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.T7135A	p.S2379T	.	.	225	33	63	3	A|0.500;T|0.500	90
MUC4	4585	broad.mit.edu	37	3	195513096	195513096	+	Silent	SNP	A	A	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.T5355A	p.A1785A	.	.	477	22	132	1	.	90
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195507026	195507026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.C11425A	p.L3809I	.	.	168	27	75	1	.	90
MUC4	4585	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	195510030	195510030	+	Silent	SNP	C	C	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.G8421C	p.S2807S	.	.	173	42	66	2	.	90
MUC4	4585	hgsc.bcm.edu	37	3	195507851	195507851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.G10600A	p.A3534T	.	.	397	17	108	0	.	90
MUC4	4585	hgsc.bcm.edu	37	3	195512959	195513102	+	In_Frame_Del	DEL	GAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGATGGCCTGACCTGTGGATGCCGAGGAAACGTCGGTGACAGGAAGACGGGTGGTGTCATCTGTGGAAGCTGAA	GAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGATGGCCTGACCTGTGGATGCCGAGGAAACGTCGGTGACAGGAAGACGGGTGGTGTCATCTGTGGAAGCTGAA	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	GAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGATGGCCTGACCTGTGGATGCCGAGGAAACGTCGGTGACAGGAAGACGGGTGGTGTCATCTGTGGAAGCTGAA	GAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAGGAAGAGGGATGGCCTGACCTGTGGATGCCGAGGAAACGTCGGTGACAGGAAGACGGGTGGTGTCATCTGTGGAAGCTGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.5349_5492del	p.1783_1831del	.	.	261	0	74	0	.	90
MUC4	4585	ucsc.edu;bcgsc.ca	37	3	195515353	195515353	+	Missense_Mutation	SNP	T	T	G	rs13065435	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.A3098C	p.E1033A	.	.	256	29	72	1	A|0.005;G|0.002;T|0.992	90
MUC6	4588	bcgsc.ca	37	11	1017200	1017200	+	Silent	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC6	NM_005961	exon31	c.C5601G	p.A1867A	.	.	932	69	152	5	.	23
MUC6	4588	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1016213	1016213	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC6	NM_005961	exon31	c.T6588C	p.P2196P	.	.	219	84	86	1	.	23
MUC6	4588	hgsc.bcm.edu	37	11	1016713	1016724	+	In_Frame_Del	DEL	TGTGGGTAGTGA	TGTGGGTAGTGA	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	TGTGGGTAGTGA	TGTGGGTAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC6	NM_005961	exon31	c.6077_6088del	p.2026_2030del	.	.	1099	0	172	0	.	23
MUC6	4588	hgsc.bcm.edu	37	11	1016851	1016851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC6	NM_005961	exon31	c.A5950G	p.M1984V	.	.	1978	89	186	0	.	23
MUC6	4588	hgsc.bcm.edu	37	11	1017892	1017894	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC6	NM_005961	exon31	c.4907_4909del	p.1636_1637del	.	.	1266	0	187	0	.	23
MUC7	4589	ucsc.edu	37	4	71347240	71347240	+	Missense_Mutation	SNP	T	T	C	rs145745951	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC7	NM_001145007	exon4	c.T779C	p.V260A	.	.	366	81	84	7	T|1.000;C|0.000	93
MXRA5	25878	ucsc.edu	37	X	3235547	3235547	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MXRA5	NM_015419	exon6	c.C6175T	p.L2059L	.	.	44	4	30	0	.	136
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15808930	15808930	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MYH11	NM_001040114	exon41	c.5643delA	p.K1881fs	.	.	93	39	50	0	.	666
MYH6	4624	ucsc.edu	37	14	23855645	23855645	+	Missense_Mutation	SNP	A	A	G	rs61742476	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MYH6	NM_002471	exon33	c.T4838C	p.V1613A	.	.	151	37	63	10	A|0.983;G|0.017	94
MYH6	4624	ucsc.edu	37	14	23855705	23855705	+	Missense_Mutation	SNP	T	T	A	rs61737004	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MYH6	NM_002471	exon33	c.A4778T	p.Q1593L	.	.	188	53	80	14	T|0.038;A|0.962	94
NBN	4683	hgsc.bcm.edu;broad.mit.edu	37	8	90965666	90965666	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NBN	NM_002485	exon11	c.1651delA	p.R551fs	.	.	969	7	149	0	.	1395
NBPF10	100132406	bcgsc.ca	37	1	145296403	145296403	+	Silent	SNP	C	C	T	rs4996269	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001039703	exon3	c.C325T	p.L109L	.	.	418	18	68	0	C|0.959;T|0.041	.
NBPF10	100132406	broad.mit.edu	37	1	145296448	145296448	+	Missense_Mutation	SNP	T	T	A	rs78828650	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001039703	exon3	c.T370A	p.Y124N	.	.	555	39	96	0	T|0.750;A|0.250	.
NBPF10	100132406	broad.mit.edu	37	1	145297661	145297661	+	Missense_Mutation	SNP	C	C	A	rs7530267	bycluster;by2hit2allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001039703	exon4	c.C536A	p.A179D	.	.	600	19	121	2	.	.
NBPF10	100132406	broad.mit.edu	37	1	145304529	145304529	+	Missense_Mutation	SNP	T	T	C	rs76272271	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001039703	exon10	c.T1462C	p.S488P	.	.	792	90	126	0	T|0.625;C|0.375	.
NBPF14	25832	bcgsc.ca	37	1	148004644	148004644	+	Silent	SNP	A	A	G	rs76568424		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NBPF14	NM_015383	exon22	c.T2670C	p.H890H	.	.	935	81	185	0	G|1.000;|0.000	91
NBPF14	25832	bcgsc.ca	37	1	148004649	148004649	+	Missense_Mutation	SNP	C	C	G	rs74731244		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NBPF14	NM_015383	exon22	c.G2665C	p.E889Q	.	.	926	79	182	0	G|1.000;|0.000	91
NBPF14	25832	bcgsc.ca	37	1	148004714	148004714	+	Missense_Mutation	SNP	G	G	A	rs201202391	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NBPF14	NM_015383	exon22	c.C2600T	p.S867L	.	.	500	64	92	0	G|0.988;A|0.013	91
NBPF14	25832	bcgsc.ca	37	1	148004732	148004732	+	Missense_Mutation	SNP	A	A	C	rs77570381		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NBPF14	NM_015383	exon22	c.T2582G	p.I861R	.	.	227	81	56	4	C|1.000;|0.000	91
NBPF14	25832	ucsc.edu;bcgsc.ca	37	1	148004749	148004749	+	Silent	SNP	C	C	T	rs77143638	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NBPF14	NM_015383	exon22	c.G2565A	p.L855L	.	.	134	45	31	0	C|0.986;T|0.014	91
NBPF1	55672	broad.mit.edu	37	1	16890518	16890518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	1558	15	182	0	.	.
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	71	5	11	0	C|0.500;T|0.500	.
NBPF22P	285622	broad.mit.edu	37	5	85592101	85592101	+	RNA	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	483	5	122	1	.	.
NBPF9	400818	bcgsc.ca	37	1	144828683	144828683	+	Missense_Mutation	SNP	C	C	G	rs3183413		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	1191	148	165	0	.	.
NBPF9	400818	bcgsc.ca	37	1	144828688	144828688	+	Silent	SNP	C	C	T	rs3183414		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	1203	147	168	0	.	.
NBPF9	400818	bcgsc.ca	37	1	144828707	144828707	+	Missense_Mutation	SNP	G	G	T	rs1065068	alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	1183	126	160	4	.	.
NBPF9	400818	broad.mit.edu;ucsc.edu	37	1	144828583	144828583	+	Silent	SNP	G	G	A	rs76717388		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	552	119	109	0	G|0.500;A|0.500	.
NCF1	653361	broad.mit.edu	37	7	74193718	74193718	+	Silent	SNP	C	C	T	rs79234723		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NCF1	NM_000265	exon4	c.C345T	p.L115L	.	.	274	20	107	0	C|0.500;T|0.500	91
NCOR1P1	149934	bcgsc.ca	37	20	26084228	26084228	+	RNA	SNP	G	G	A	rs75212180	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	392	102	117	1	G|0.500;A|0.500	.
NCOR1P1	149934	ucsc.edu;bcgsc.ca	37	20	26084172	26084172	+	RNA	SNP	C	C	T	rs77925113	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	560	134	134	4	C|0.500;T|0.500	.
NCOR1P1	149934	ucsc.edu;bcgsc.ca	37	20	26084251	26084251	+	RNA	SNP	C	C	T	rs61752036	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	370	105	109	0	C|0.400;T|0.600	.
ND4	0	broad.mit.edu	37	MT	11120	11120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	ENST00000361381	exon1	c.T361C	p.F121L	.	.	226	10	20	0	.	.
NEFH	4744	hgsc.bcm.edu	37	22	29885573	29885574	+	In_Frame_Ins	INS	-	-	CCTGAGAAGGCCAAGTCC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NEFH	NM_021076	exon4	c.1944_1945insCCTGAGAAGGCCAAGTCC	p.S648delinsSPEKAKS	.	.	135	20	46	0	.	90
NLGN4X	57502	bcgsc.ca	37	X	5827262	5827262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NLGN4X	NM_181332	exon4	c.A644G	p.D215G	.	.	164	7	59	0	.	195
NLRP12	91662	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54313461	54313461	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NLRP12	NM_144687	exon3	c.C1452T	p.D484D	.	.	120	47	60	1	.	211
NLRP5	126206	bcgsc.ca	37	19	56527127	56527127	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NLRP5	NM_153447	exon4	c.A528G	p.Q176Q	.	.	226	8	82	0	.	162
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	117768410	117768410	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NOS1	NM_000620	exon2	c.C465T	p.P155P	.	.	55	22	25	0	.	154
NQO1	1728	hgsc.bcm.edu	37	16	69748929	69748932	+	Frame_Shift_Del	DEL	GCTC	GCTC	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	GCTC	GCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NQO1	NM_000903	exon4	c.352_355del	p.118_119del	.	.	65	0	26	0	.	90
NR1I3	9970	bcgsc.ca	37	1	161200665	161200665	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NR1I3	NM_001077482	exon8	c.A882G	p.Q294Q	.	.	209	9	88	0	.	188
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	107824934	107824934	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NRCAM	NM_001037132	exon18	c.C2160T	p.R720R	.	.	106	39	42	0	.	156
NRD1	4898	hgsc.bcm.edu	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NRD1	NM_002525	exon2	c.A449T	p.E150V	.	.	298	18	111	0	T|0.024;A|0.976	90
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	.	.	129	4	53	0	.	90
OR13C2	392376	ucsc.edu;bcgsc.ca	37	9	107367431	107367431	+	Missense_Mutation	SNP	A	A	T	rs61735925	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR13C2	NM_001004481	exon1	c.T478A	p.S160T	.	.	390	134	90	8	A|0.158;T|0.842	69
OR13C5	138799	ucsc.edu	37	9	107361346	107361346	+	Missense_Mutation	SNP	C	C	T	rs61747458		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR13C5	NM_001004482	exon1	c.G349A	p.V117M	.	.	387	130	86	24	C|0.024;T|0.976	72
OR1E1	8387	broad.mit.edu;ucsc.edu	37	17	3300970	3300970	+	Silent	SNP	C	C	G	rs61735439	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR1E1	NM_003553	exon1	c.G735C	p.L245L	.	.	166	59	57	0	C|0.987;G|0.013	68
OR1E1	8387	ucsc.edu	37	17	3300946	3300946	+	Silent	SNP	T	T	C	rs404983	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR1E1	NM_003553	exon1	c.A759G	p.G253G	.	.	176	66	62	3	T|0.991;C|0.009	68
OR1E2	8388	broad.mit.edu	37	17	3336543	3336543	+	Missense_Mutation	SNP	C	C	A	rs379147	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR1E2	NM_003554	exon1	c.G593T	p.C198F	.	.	203	11	76	0	C|0.016;A|0.984	131
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	248263611	248263611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2L13	NM_175911	exon3	c.G934T	p.E312X	.	.	110	27	32	0	.	70
OR2T12	127064	ucsc.edu	37	1	248458419	248458419	+	Silent	SNP	G	G	C	rs35294053	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2T12	NM_001004692	exon1	c.C462G	p.G154G	.	.	568	102	83	3	G|0.833;C|0.167	71
OR2T2	401992	broad.mit.edu;bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	rs199823862		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	TGCTGCG	TGCTGCG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2T2	NM_001004136	exon1	c.607_613del	p.203_205del	.	.	1114	22	159	0	.	23
OR2T27	403239	ucsc.edu	37	1	248813827	248813827	+	Missense_Mutation	SNP	T	T	C	rs61834488	bycluster;byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2T27	NM_001001824	exon1	c.A359G	p.Y120C	.	.	953	243	151	22	T|0.333;C|0.667	47
OR2T33	391195	bcgsc.ca	37	1	248436328	248436328	+	Silent	SNP	A	A	G	rs76620291	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2T33	NM_001004695	exon1	c.T789C	p.H263H	.	.	678	305	141	28	A|1.000;|0.000	114
OR2T4	127074	hgsc.bcm.edu	37	1	248525404	248525404	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2T4	NM_001004696	exon1	c.C522T	p.L174L	.	.	1540	68	172	0	.	68
OR2T4	127074	hgsc.bcm.edu	37	1	248525411	248525411	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2T4	NM_001004696	exon1	c.T529G	p.S177A	.	.	1529	62	174	0	.	68
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525285	248525285	+	Missense_Mutation	SNP	T	T	C	rs28637620	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2T4	NM_001004696	exon1	c.T403C	p.F135L	.	.	1526	425	143	4	T|0.865;C|0.135	68
OR4C3	256144	bcgsc.ca	37	11	48346513	48346513	+	Silent	SNP	T	T	C	rs78206553	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR4C3	NM_001004702	exon1	c.T21C	p.L7L	.	.	505	82	126	1	T|0.914;C|0.086	69
OR4C3	256144	bcgsc.ca	37	11	48346523	48346523	+	Missense_Mutation	SNP	C	C	T	rs72911451	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR4C3	NM_001004702	exon1	c.C31T	p.L11F	.	.	523	79	127	1	C|0.946;T|0.054	69
OR4C3	256144	bcgsc.ca	37	11	48346551	48346551	+	Missense_Mutation	SNP	C	C	A	rs77470587	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR4C3	NM_001004702	exon1	c.C59A	p.A20E	.	.	555	78	130	1	C|0.960;A|0.040	69
OR4C3	256144	hgsc.bcm.edu	37	11	48347124	48347144	+	In_Frame_Del	DEL	AAGTTGCCTGCACCAATACGT	AAGTTGCCTGCACCAATACGT	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	AAGTTGCCTGCACCAATACGT	AAGTTGCCTGCACCAATACGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR4C3	NM_001004702	exon1	c.632_652del	p.211_218del	.	.	643	0	135	0	.	69
OR4C46	119749	ucsc.edu	37	11	51516144	51516144	+	Missense_Mutation	SNP	A	A	G	rs75742800	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR4C46	NM_001004703	exon1	c.A863G	p.K288R	.	.	149	62	34	3	A|0.250;G|0.750	69
OR51F1	256892	hgsc.bcm.edu	37	11	4790868	4790874	+	Frame_Shift_Del	DEL	TTTCACG	TTTCACG	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	TTTCACG	TTTCACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR51F1	NM_001004752	exon1	c.274_280del	p.92_94del	.	.	135	0	55	0	.	70
OR52I2	143502	ucsc.edu	37	11	4608262	4608262	+	Missense_Mutation	SNP	A	A	C	rs79116379		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR52I2	NM_001005170	exon1	c.A220C	p.I74L	.	.	551	293	136	64	A|0.500;C|0.500	91
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55761412	55761412	+	Silent	SNP	C	C	T	rs144082157	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR5F1	NM_003697	exon1	c.G690A	p.S230S	.	.	127	52	31	0	C|0.999;T|0.001	70
OR6B3	150681	ucsc.edu	37	2	240985347	240985347	+	Missense_Mutation	SNP	G	G	A	rs61730684	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR6B3	NM_173351	exon1	c.C143T	p.T48I	.	.	172	70	74	20	G|0.122;A|0.878	68
OSCAR	126014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54602893	54602893	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OSCAR	NM_130771	exon4	c.71-1G>T	.	.	.	117	50	44	0	.	68
PABPC4L	132430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	135121534	135121534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001114734	exon2	c.G815T	p.G272V	.	.	195	87	62	0	.	.
PCBP4	57060	ucsc.edu	37	3	51993912	51993912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCBP4	NM_033008	exon7	c.A515G	p.E172G	.	.	42	4	25	0	.	226
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182753	140182753	+	Silent	SNP	C	C	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCDHA3	NM_031497	exon1	c.C1971G	p.P657P	.	.	106	48	50	0	.	98
PCDHA4	56144	ucsc.edu	37	5	140187048	140187048	+	Silent	SNP	G	G	C	rs3822349	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCDHA4	NM_031500	exon1	c.G276C	p.R92R	.	.	65	24	13	1	G|0.926;C|0.074	96
PCDHB16	57717	hgsc.bcm.edu	37	5	140563708	140563708	+	Missense_Mutation	SNP	G	G	A	rs17844651	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCDHB16	NM_020957	exon1	c.G1574A	p.R525Q	.	.	117	17	39	0	G|0.567;A|0.433	92
PCDHB8	56128	ucsc.edu	37	5	140559103	140559103	+	Silent	SNP	T	T	C	rs61748923	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCDHB8	NM_019120	exon1	c.T1488C	p.D496D	.	.	121	55	45	15	T|0.408;C|0.592	131
PCLO	27445	hgsc.bcm.edu	37	7	82595385	82595385	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCLO	NM_014510	exon4	c.3719delA	p.K1240fs	.	.	1577	13	197	1	.	29
PCMTD1	115294	broad.mit.edu	37	8	52733037	52733037	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCMTD1	NM_052937	exon6	c.G948A	p.E316E	.	.	948	71	156	0	.	68
PCNT	5116	bcgsc.ca	37	21	47783510	47783510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCNT	NM_006031	exon14	c.A2270G	p.E757G	.	.	131	5	60	0	.	141
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47773060	47773060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCNT	NM_006031	exon10	c.A1499G	p.D500G	.	.	92	25	56	0	.	141
PCNXL3	399909	broad.mit.edu;bcgsc.ca	37	11	65404248	65404259	+	In_Frame_Del	DEL	CCTCAGCCTCAG	CCTCAGCCTCAG	-	rs142310983		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CCTCAGCCTCAG	CCTCAGCCTCAG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCNXL3	NM_032223	exon35	c.5904_5915del	p.1968_1972del	.	.	47	10	25	0	CCTCAGCCTCAG|0.985;-|0.015	46
PCP4L1	654790	hgsc.bcm.edu	37	1	161254154	161254156	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001102566	exon3	c.90_92del	p.30_31del	.	.	761	0	150	1	.	.
PDE4DIP	9659	ucsc.edu	37	1	144855866	144855866	+	Silent	SNP	A	A	G	rs72473741		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PDE4DIP	NM_014644	exon41	c.T6687C	p.G2229G	.	.	98	27	19	3	.	663
PDPR	55066	ucsc.edu	37	16	70161263	70161263	+	Missense_Mutation	SNP	T	T	C	rs2549532	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PDPR	NM_017990	exon4	c.T328C	p.Y110H	.	.	324	129	112	24	T|0.563;C|0.437	135
PDS5B	23047	hgsc.bcm.edu	37	13	33344887	33344888	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PDS5B	NM_015032	exon33	c.4160_4161insA	p.P1387fs	.	.	604	0	129	0	.	94
PELP1	27043	broad.mit.edu;bcgsc.ca	37	17	4577867	4577867	+	Missense_Mutation	SNP	G	G	A	rs199877885		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PELP1	NM_014389	exon13	c.C1520T	p.P507L	.	.	119	47	55	1	G|0.996;A|0.004	24
PEX10	5192	ucsc.edu;bcgsc.ca	37	1	2337963	2337963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PEX10	NM_153818	exon5	c.T932C	p.L311P	.	.	56	5	30	0	.	90
PHLPP2	23035	bcgsc.ca	37	16	71697812	71697812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PHLPP2	NM_015020	exon12	c.T1975C	p.F659L	.	.	162	6	76	0	.	91
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	77569480	77569480	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PHTF2	NM_001127357	exon12	c.C1499A	p.S500X	.	.	495	183	126	0	.	23
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126733602	126733602	+	Silent	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PLXNA1	NM_032242	exon13	c.C2805A	p.A935A	.	.	87	37	31	0	.	93
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152225435	152225435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PNMA3	NM_013364	exon2	c.A23G	p.D8G	.	.	117	104	40	0	.	600
PNPLA7	375775	bcgsc.ca	37	9	140441325	140441325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PNPLA7	NM_001098537	exon4	c.A230G	p.K77R	.	.	69	5	50	0	.	91
POLR2E	5434	hgsc.bcm.edu	37	19	1094065	1094117	+	Frame_Shift_Del	DEL	GGTCGTGGCACAGCTGCAGAGAGAAAGAACCAGCTGACCCCAGGGCAGAGAGA	GGTCGTGGCACAGCTGCAGAGAGAAAGAACCAGCTGACCCCAGGGCAGAGAGA	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	GGTCGTGGCACAGCTGCAGAGAGAAAGAACCAGCTGACCCCAGGGCAGAGAGA	GGTCGTGGCACAGCTGCAGAGAGAAAGAACCAGCTGACCCCAGGGCAGAGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	POLR2E	NM_002695	exon2	c.58_70del	p.20_24del	.	.	78	0	28	0	.	90
POLR2M	81488	broad.mit.edu	37	15	58001460	58001460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_015532	exon2	c.T662C	p.L221P	.	.	148	5	56	0	.	.
POM121L10P	646074	ucsc.edu	37	22	25041555	25041555	+	RNA	SNP	G	G	A	rs86008		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	215	76	61	11	G|0.750;A|0.250	.
POM121L9P	29774	broad.mit.edu	37	22	24659809	24659809	+	RNA	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	30	4	9	0	.	.
PPARGC1B	133522	bcgsc.ca	37	5	149221893	149221893	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PPARGC1B	NM_133263	exon10	c.A2769G	p.E923E	.	.	150	5	55	0	.	186
PPIAL4G	644591	ucsc.edu	37	1	143767643	143767643	+	Missense_Mutation	SNP	T	T	C	rs78862507	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001123068	exon1	c.A206G	p.H69R	.	.	746	359	78	0	T|0.667;C|0.333	.
PRAM1	84106	broad.mit.edu;bcgsc.ca	37	19	8563661	8563661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_032152	exon2	c.A1031G	p.K344R	.	.	84	6	66	0	.	.
PRAME	23532	ucsc.edu	37	22	22890788	22890788	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PRAME	NM_206954	exon6	c.T1231C	p.L411L	.	.	43	4	20	0	.	515
PRAMEF1	65121	ucsc.edu	37	1	12854162	12854162	+	Missense_Mutation	SNP	C	C	T	rs199893374		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PRAMEF1	NM_023013	exon3	c.C386T	p.T129M	.	.	353	67	99	6	.	22
PRAMEF2	65122	ucsc.edu	37	1	12921539	12921539	+	Missense_Mutation	SNP	T	T	G	rs142594496	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PRAMEF2	NM_023014	exon4	c.T1330G	p.F444V	.	.	212	64	67	0	T|0.972;G|0.028	68
PRAMEF4	400735	ucsc.edu	37	1	12942138	12942138	+	Missense_Mutation	SNP	C	C	G	rs75888855		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PRAMEF4	NM_001009611	exon3	c.G412C	p.E138Q	.	.	44	15	20	3	C|0.500;G|0.500	45
PRAMEF4	400735	ucsc.edu	37	1	12943038	12943038	+	Missense_Mutation	SNP	A	A	C	rs3121081		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PRAMEF4	NM_001009611	exon2	c.T178G	p.S60A	.	.	204	78	55	1	T|0.852;G|0.148	45
PRB1	5542	hgsc.bcm.edu	37	12	11506288	11506288	+	Missense_Mutation	SNP	T	T	C	rs140825288		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PRB1	NM_199353	exon4	c.A350G	p.K117R	.	.	617	35	152	0	T|1.000;C|0.000	90
PROSER1	80209	broad.mit.edu	37	13	39587288	39587288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_025138	exon11	c.A2101G	p.T701A	.	.	156	5	40	0	.	.
PRR14L	253143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32111160	32111160	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PRR14L	NM_173566	exon4	c.A2665C	p.T889P	.	.	438	208	123	0	.	91
PSD3	23362	bcgsc.ca	37	8	18729748	18729748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PSD3	NM_015310	exon3	c.T626C	p.F209S	.	.	120	5	75	0	.	93
PTK7	5754	bcgsc.ca	37	6	43126697	43126697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PTK7	NM_001270398	exon18	c.T2888C	p.V963A	.	.	59	5	28	0	.	1493
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114380291	114380291	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PTPN22	NM_015967	exon13	c.T1731C	p.Y577Y	.	.	162	60	63	0	.	227
RAB33A	9363	bcgsc.ca	37	X	129318540	129318540	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RAB33A	NM_004794	exon2	c.A540G	p.T180T	.	.	197	7	57	0	.	227
RAD51AP2	729475	hgsc.bcm.edu	37	2	17697199	17697199	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RAD51AP2	NM_001099218	exon1	c.2484delA	p.K828fs	.	.	579	14	140	4	.	23
RAD51B	5890	bcgsc.ca	37	14	68331831	68331831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RAD51B	NM_133509	exon5	c.A427G	p.T143A	.	.	72	4	63	0	.	660
RANBP2	5903	broad.mit.edu	37	2	109365492	109365492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RANBP2	NM_006267	exon9	c.T1180C	p.S394P	.	.	1936	14	180	0	.	675
RANBP2	5903	broad.mit.edu	37	2	109367729	109367729	+	Missense_Mutation	SNP	G	G	A	rs2556291	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RANBP2	NM_006267	exon10	c.G1283A	p.R428Q	.	.	1200	24	132	0	G|0.500;A|0.500	675
RBMX	27316	hgsc.bcm.edu	37	X	135960247	135960248	+	Splice_Site	INS	-	-	A	rs35488933		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RBMX	NM_002139	exon5	c.217-2->T	.	.	.	296	0	57	0	.	131
RBMXL3	139804	hgsc.bcm.edu	37	X	114425207	114425208	+	In_Frame_Ins	INS	-	-	GGAGGCCGCTCGCCCGACACCCACAGT	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001145346	exon1	c.1203_1204insGGAGGCCGCTCGCCCGACACCCACAGT	p.S401delinsSGGRSPDTHS	.	.	74	0	8	0	.	.
RDH11	51109	bcgsc.ca	37	14	68151921	68151921	+	Missense_Mutation	SNP	C	C	T	rs199680188	alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RDH11	NM_016026	exon6	c.G665A	p.G222D	.	.	34	4	33	0	C|0.999;G|0.000	91
RERE	473	broad.mit.edu	37	1	8420609	8420609	+	Silent	SNP	T	T	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RERE	NM_001042681	exon18	c.A2958C	p.P986P	.	.	63	19	27	7	.	515
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39310299	39310299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RFC1	NM_002913	exon13	c.G1842T	p.W614C	.	.	563	248	141	0	.	230
RFPL2	10739	ucsc.edu	37	22	32586854	32586854	+	Missense_Mutation	SNP	C	C	T	rs136467	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RFPL2	NM_001098527	exon5	c.G1042A	p.V348I	.	.	223	80	65	0	C|0.575;T|0.425	91
RFPL2	10739	ucsc.edu	37	22	32586875	32586875	+	Missense_Mutation	SNP	G	G	A	rs136468	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RFPL2	NM_001098527	exon5	c.C1021T	p.R341C	.	.	238	93	69	6	G|0.561;A|0.439	91
RFPL2	10739	ucsc.edu	37	22	32586878	32586878	+	Silent	SNP	A	A	G	rs136469	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RFPL2	NM_001098527	exon5	c.T1018C	p.L340L	.	.	245	95	71	7	A|0.589;G|0.411	91
RFX2	5990	ucsc.edu	37	19	6008120	6008120	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RFX2	NM_000635	exon10	c.C1131T	p.C377C	.	.	51	4	28	0	.	156
RGPD3	653489	broad.mit.edu	37	2	107040572	107040572	+	Missense_Mutation	SNP	T	T	C	rs3870235		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RGPD3	NM_001144013	exon20	c.A3851G	p.H1284R	.	.	979	167	175	4	.	23
RGPD8	727851	bcgsc.ca	37	2	113147684	113147684	+	Missense_Mutation	SNP	T	T	A	rs2056812	alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001164463	exon20	c.A2838T	p.L946F	.	.	1267	45	183	1	.	.
RGS6	9628	bcgsc.ca	37	14	72944995	72944995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RGS6	NM_001204424	exon12	c.A812G	p.Q271R	.	.	156	5	95	0	.	227
RNU6-71	100873774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56470829	56470829	+	RNA	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	258	94	78	0	.	.
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10467681	10467686	+	In_Frame_Del	DEL	TCCTTC	TCCTTC	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	TCCTTC	TCCTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RP1L1	NM_178857	exon4	c.3922_3927del	p.1308_1309del	.	.	260	14	106	0	.	139
RRBP1	6238	ucsc.edu	37	20	17601442	17601442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RRBP1	NM_004587	exon17	c.T2126C	p.L709P	.	.	31	4	26	0	.	92
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RRN3	NM_018427	exon1	c.C25T	p.R9C	.	.	53	4	30	1	G|0.997;A|0.003	91
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237774079	237774079	+	Silent	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RYR2	NM_001035	exon36	c.G4701T	p.S1567S	.	.	181	52	67	0	.	158
SDHAP1	255812	broad.mit.edu	37	3	195698262	195698262	+	RNA	SNP	C	C	G	rs78216694	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	526	71	140	0	C|1.000;|0.000	.
SDHAP1	255812	broad.mit.edu	37	3	195698264	195698264	+	RNA	SNP	T	T	C	rs52815337	bycluster	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	529	70	141	0	T|0.333;C|0.667	.
SDHAP1	255812	ucsc.edu	37	3	195711042	195711042	+	RNA	SNP	C	C	G	rs56383352		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	114	28	60	15	.	.
SDHAP2	727956	broad.mit.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs77981248		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	187	21	81	0	A|0.500;G|0.500	.
SDHAP2	727956	ucsc.edu	37	3	195395399	195395399	+	RNA	SNP	G	G	A	rs62287990	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	525	122	155	36	G|0.731;A|0.269	.
SDHAP2	727956	ucsc.edu	37	3	195395402	195395402	+	RNA	SNP	C	C	A	rs2688572	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	543	143	158	36	C|0.500;A|0.500	.
SEL1L	6400	bcgsc.ca	37	14	81954276	81954276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SEL1L	NM_005065	exon15	c.T1406C	p.L469P	.	.	63	4	46	0	.	227
SENP1	29843	bcgsc.ca	37	12	48457562	48457562	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SENP1	NM_001267594	exon13	c.A1338G	p.E446E	.	.	187	6	73	0	.	660
SERPINC1	462	bcgsc.ca	37	1	173878830	173878830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SERPINC1	NM_000488	exon5	c.A1013G	p.E338G	.	.	163	7	40	0	.	227
SERTAD3	29946	ucsc.edu	37	19	40947983	40947983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SERTAD3	NM_013368	exon2	c.T5C	p.V2A	.	.	25	4	21	0	.	90
SFTPA2	729238	ucsc.edu	37	10	81319214	81319214	+	Missense_Mutation	SNP	G	G	T	rs35576782		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001098668	exon3	c.C26A	p.T9N	.	.	444	158	135	33	.	.
SIRPA	140885	bcgsc.ca	37	20	1896060	1896060	+	Missense_Mutation	SNP	T	T	C	rs114499682	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SIRPA	NM_001040022	exon3	c.T395C	p.V132A	.	.	279	55	92	1	T|0.684;C|0.317	227
SIRPA	140885	ucsc.edu;bcgsc.ca	37	20	1895984	1895984	+	Missense_Mutation	SNP	C	C	A	rs17855615	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SIRPA	NM_001040022	exon3	c.C319A	p.R107S	.	.	531	80	144	0	C|0.700;A|0.300	227
SIRPA	140885	ucsc.edu;bcgsc.ca	37	20	1895990	1895990	+	Missense_Mutation	SNP	G	G	A	rs201545978		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SIRPA	NM_001040022	exon3	c.G325A	p.G109S	.	.	514	78	142	0	.	227
SLC25A12	8604	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172693690	172693690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC25A12	NM_003705	exon6	c.A553G	p.I185V	.	.	479	198	127	1	.	90
SLC25A21	89874	broad.mit.edu	37	14	37154060	37154060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC25A21	NM_030631	exon8	c.A674G	p.N225S	.	.	193	6	79	0	.	91
SLC2A3	6515	ucsc.edu	37	12	8082367	8082367	+	Silent	SNP	T	T	C	rs17847967	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC2A3	NM_006931	exon6	c.A774G	p.L258L	.	.	398	163	97	0	T|0.846;C|0.154	94
SLC35G5	83650	ucsc.edu	37	8	11189535	11189535	+	Missense_Mutation	SNP	T	T	C	rs12681991	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_054028	exon1	c.T920C	p.L307P	.	.	141	35	61	24	T|0.557;C|0.443	.
SLC39A5	283375	ucsc.edu	37	12	56629409	56629409	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC39A5	NM_173596	exon8	c.A870G	p.S290S	.	.	111	1	61	1	.	92
SLC4A10	57282	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162627522	162627522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC4A10	NM_001178016	exon3	c.C121T	p.R41C	.	.	137	55	58	1	.	229
SLC9B1	150159	broad.mit.edu	37	4	103826800	103826800	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001100874	exon11	c.T1203C	p.S401S	.	.	448	19	101	0	.	.
SLCO1B3	28234	hgsc.bcm.edu	37	12	21028267	21028267	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLCO1B3	NM_019844	exon9	c.826delT	p.F276fs	.	.	568	10	128	2	.	155
SMC2	10592	bcgsc.ca	37	9	106882312	106882312	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SMC2	NM_006444	exon16	c.T2001C	p.A667A	.	.	80	4	49	0	.	210
SMURF1	57154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98655111	98655111	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SMURF1	NM_020429	exon4	c.267delA	p.K89fs	.	.	251	89	94	0	.	661
SON	6651	ucsc.edu	37	21	34923319	34923319	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SON	NM_032195	exon3	c.A1782G	p.L594L	.	.	120	5	53	0	.	97
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	.	.	796	0	171	0	.	.
SPDYE1	285955	broad.mit.edu;bcgsc.ca	37	7	44047000	44047000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SPDYE1	NM_175064	exon5	c.C766T	p.P256S	.	.	380	17	133	1	.	91
ST18	9705	hgsc.bcm.edu	37	8	53062482	53062482	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ST18	NM_014682	exon16	c.1862delA	p.N621fs	.	.	922	12	159	2	.	95
STAM2	10254	bcgsc.ca	37	2	152989719	152989719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	STAM2	NM_005843	exon10	c.A938G	p.K313R	.	.	93	5	41	0	.	187
STEAP1B	256227	ucsc.edu	37	7	22533119	22533119	+	Missense_Mutation	SNP	C	C	G	rs200585731	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001164460	exon3	c.G421C	p.V141L	.	.	283	82	98	22	C|0.959;G|0.041	.
STK11	6794	ucsc.edu	37	19	1220491	1220491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	STK11	NM_000455	exon4	c.T584C	p.L195P	.	.	46	4	32	0	.	5227
STXBP1	6812	bcgsc.ca	37	9	130413906	130413906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	STXBP1	NM_001032221	exon2	c.A62G	p.K21R	.	.	131	5	48	0	.	91
SULT1A1	6817	ucsc.edu	37	16	28617514	28617514	+	Missense_Mutation	SNP	C	C	T	rs9282861	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SULT1A1	NM_177534	exon6	c.G638A	p.R213H	.	.	316	50	106	13	C|0.776;T|0.224	90
SYCP1	6847	hgsc.bcm.edu	37	1	115469133	115469134	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SYCP1	NM_003176	exon23	c.1875_1876insA	p.L625fs	.	.	972	0	146	0	.	91
SYCP1	6847	hgsc.bcm.edu	37	1	115527421	115527421	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SYCP1	NM_003176	exon30	c.2635delA	p.K879fs	.	.	406	9	120	1	.	91
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115524051	115524051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SYCP1	NM_003176	exon29	c.C2477T	p.S826L	.	.	215	96	74	0	.	91
SYCP3	50511	hgsc.bcm.edu	37	12	102122900	102122901	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SYCP3	NM_153694	exon8	c.644_645insA	p.I215fs	.	.	899	0	161	0	.	90
SYNDIG1L	646658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74876039	74876039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SYNDIG1L	NM_001105579	exon2	c.G409A	p.E137K	.	.	88	54	72	0	.	68
TBX18	9096	bcgsc.ca	37	6	85454024	85454024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TBX18	NM_001080508	exon6	c.A959G	p.D320G	.	.	138	5	97	0	.	73
TBX22	50945	bcgsc.ca	37	X	79282311	79282311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TBX22	NM_016954	exon5	c.A742G	p.T248A	.	.	66	4	44	0	.	628
TCEAL5	340543	broad.mit.edu	37	X	102529084	102529084	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TCEAL5	NM_001012979	exon3	c.A408G	p.Q136Q	.	.	903	31	127	0	.	175
TCEB3B	51224	ucsc.edu	37	18	44561516	44561516	+	Silent	SNP	C	C	G	rs61733488	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TCEB3B	NM_016427	exon1	c.G120C	p.T40T	.	.	251	77	84	6	C|0.467;G|0.533	156
TCEB3C	162699	hgsc.bcm.edu	37	18	44555459	44555460	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TCEB3C	NM_145653	exon1	c.755_756insG	p.A252fs	.	.	279	16	76	0	.	68
TCHH	7062	broad.mit.edu	37	1	152082449	152082449	+	Missense_Mutation	SNP	T	T	C	rs199978971		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TCHH	NM_007113	exon3	c.A3244G	p.K1082E	.	.	440	42	102	3	.	72
TCHH	7062	broad.mit.edu	37	1	152082500	152082500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TCHH	NM_007113	exon3	c.G3193A	p.G1065R	.	.	489	14	103	0	.	72
TGFB2	7042	broad.mit.edu	37	1	218607734	218607734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TGFB2	NM_001135599	exon5	c.C782T	p.P261L	.	.	191	6	66	0	.	710
THBS3	7059	bcgsc.ca	37	1	155170914	155170914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	THBS3	NM_007112	exon12	c.T1411C	p.C471R	.	.	300	9	100	0	.	222
TLR1	7096	ucsc.edu	37	4	38798856	38798856	+	Missense_Mutation	SNP	C	C	T	rs200506989		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TLR1	NM_003263	exon4	c.G1597A	p.G533R	.	.	259	101	77	8	C|0.999;T|0.000	524
TMEM109	79073	bcgsc.ca	37	11	60687323	60687323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TMEM109	NM_024092	exon2	c.T158C	p.V53A	.	.	115	5	62	0	.	90
TMEM143	55260	bcgsc.ca	37	19	48845788	48845788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TMEM143	NM_018273	exon6	c.A974G	p.K325R	.	.	51	5	37	0	.	90
TMEM164	84187	bcgsc.ca	37	X	109416600	109416600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TMEM164	NM_032227	exon7	c.T815C	p.I272T	.	.	138	6	42	0	.	193
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	83358835	83358835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TMTC2	NM_152588	exon5	c.C1631G	p.A544G	.	.	498	193	131	0	.	92
TMTC3	160418	bcgsc.ca	37	12	88588676	88588676	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TMTC3	NM_181783	exon14	c.A1995G	p.P665P	.	.	147	5	45	0	.	91
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72168474	72168474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	TNPO1,NS,carcinoma,+1	TNPO1	NM_002270	exon7	c.C605T	p.A202V	.	.	223	100	96	0	.	228
TPR	7175	broad.mit.edu	37	1	186303476	186303476	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TPR	NM_003292	exon36	c.A5163G	p.T1721T	.	.	639	10	109	0	.	228
TPTE2P6	374491	broad.mit.edu	37	13	25161397	25161397	+	RNA	SNP	C	C	G	rs3874227	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	444	55	125	0	C|0.917;G|0.083	.
TRIM41	90933	hgsc.bcm.edu	37	5	180651182	180651187	+	In_Frame_Del	DEL	GGAGGA	GGAGGA	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	GGAGGA	GGAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRIM41	NM_201627	exon1	c.183_188del	p.61_63del	.	.	54	21	24	0	.	226
TRIM52	84851	hgsc.bcm.edu	37	5	180687428	180687428	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRIM52	NM_032765	exon1	c.G387A	p.E129E	.	.	184	5	59	0	.	90
TRIM52	84851	hgsc.bcm.edu	37	5	180687440	180687440	+	Silent	SNP	T	T	C	rs80005177	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRIM52	NM_032765	exon1	c.A375G	p.E125E	.	.	181	23	56	0	T|0.991;C|0.009	90
TRIOBP	11078	bcgsc.ca	37	22	38120429	38120429	+	Silent	SNP	T	T	C	rs6000868	bycluster;byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRIOBP	NM_001039141	exon7	c.T1866C	p.D622D	.	.	353	28	96	0	T|0.625;C|0.375	136
TRIT1	54802	broad.mit.edu;bcgsc.ca	37	1	40313736	40313736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRIT1	NM_017646	exon6	c.A737G	p.D246G	.	.	200	6	83	0	.	91
TRMT10C	54931	broad.mit.edu;bcgsc.ca	37	3	101283980	101283980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_017819	exon2	c.A355G	p.T119A	.	.	182	8	62	0	.	.
TRMT1L	81627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	185089286	185089287	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRMT1L	NM_030934	exon15	c.2067_2068insT	p.L689fs	.	.	410	101	84	0	.	92
TRNAU1AP	54952	bcgsc.ca	37	1	28904033	28904033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRNAU1AP	NM_017846	exon9	c.T749C	p.V250A	.	.	107	5	46	0	.	90
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33598060	33598060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRPC4AP	NM_015638	exon12	c.C1441G	p.L481V	.	.	277	107	106	0	.	91
TRPM2	7226	bcgsc.ca	37	21	45838339	45838339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRPM2	NM_003307	exon22	c.T3362C	p.L1121P	.	.	95	5	54	0	.	92
TRRAP	8295	broad.mit.edu	37	7	98581801	98581801	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRRAP	NM_001244580	exon60	c.G9120A	p.A3040A	.	.	183	4	62	0	.	923
TSC22D2	9819	hgsc.bcm.edu	37	3	150128513	150128513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TSC22D2	NM_014779	exon1	c.C1376T	p.P459L	.	.	40	19	7	0	.	91
TTC18	118491	bcgsc.ca	37	10	75107969	75107969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TTC18	NM_145170	exon5	c.T374C	p.V125A	.	.	108	5	40	0	.	92
TTC37	9652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94839530	94839530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TTC37	NM_014639	exon31	c.G3205A	p.E1069K	.	.	154	63	86	0	.	94
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	.	.	390	28	132	13	G|0.998;A|0.002	90
TUBA3E	112714	ucsc.edu	37	2	130949553	130949553	+	Missense_Mutation	SNP	A	A	G	rs1052422	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TUBA3E	NM_207312	exon5	c.T1204C	p.W402R	.	.	153	61	56	10	A|0.657;G|0.343	69
TUBA3E	112714	ucsc.edu	37	2	130951848	130951848	+	Silent	SNP	T	T	C	rs62165073	bycluster;byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TUBA3E	NM_207312	exon4	c.A567G	p.L189L	.	.	291	92	91	5	T|0.375;C|0.625	69
TUBA3E	112714	ucsc.edu	37	2	130952718	130952718	+	Silent	SNP	G	G	A	rs3853852	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TUBA3E	NM_207312	exon3	c.C309T	p.Y103Y	.	.	244	43	94	3	G|0.637;A|0.363	69
TUBA3E	112714	ucsc.edu	37	2	130952725	130952725	+	Missense_Mutation	SNP	C	C	T	rs74378236	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TUBA3E	NM_207312	exon3	c.G302A	p.S101N	.	.	238	62	87	0	C|0.500;T|0.500	69
UGT2A3	79799	bcgsc.ca	37	4	69817450	69817450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	UGT2A3	NM_024743	exon1	c.T29C	p.F10S	.	.	97	5	36	0	.	92
UGT2B28	54490	ucsc.edu	37	4	70160342	70160342	+	Missense_Mutation	SNP	T	T	C	rs72552704	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	UGT2B28	NM_053039	exon6	c.T1405C	p.C469R	.	.	339	123	55	6	T|0.865;C|0.135	91
UGT2B28	54490	ucsc.edu;bcgsc.ca	37	4	70160343	70160343	+	Missense_Mutation	SNP	G	G	C	rs72552705	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	UGT2B28	NM_053039	exon6	c.G1406C	p.C469S	.	.	333	120	53	4	G|0.867;C|0.133	91
ULK2	9706	bcgsc.ca	37	17	19699590	19699590	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ULK2	NM_001142610	exon19	c.A1815G	p.T605T	.	.	87	5	40	0	.	334
URB1	9875	bcgsc.ca	37	21	33687390	33687390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_014825	exon39	c.T6655C	p.S2219P	.	.	114	5	68	0	.	.
USP8	9101	broad.mit.edu	37	15	50773738	50773738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	USP8	NM_001128610	exon11	c.A1279G	p.S427G	.	.	201	5	82	1	.	658
VWF	7450	ucsc.edu	37	12	6132936	6132936	+	Silent	SNP	A	A	G	rs4021576	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	VWF	NM_000552	exon25	c.T3240C	p.Y1080Y	.	.	107	23	41	0	A|0.980;G|0.020	163
WARS	7453	bcgsc.ca	37	14	100813151	100813151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	WARS	NM_004184	exon7	c.A758G	p.K253R	.	.	80	4	69	0	.	153
WASH2P	375260	ucsc.edu	37	2	114356239	114356239	+	RNA	SNP	T	T	C	rs77485924		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	101	39	36	6	T|0.500;C|0.500	.
WHAMMP3	339005	broad.mit.edu;bcgsc.ca	37	15	23191550	23191550	+	RNA	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	160	7	47	0	.	.
ZAN	7455	bcgsc.ca	37	7	100349919	100349919	+	Missense_Mutation	SNP	T	T	C	rs200193075		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZAN	.	.	.	.	.	.	429	64	135	8	T|0.996;C|0.004	142
ZAN	7455	bcgsc.ca	37	7	100350095	100350095	+	Silent	SNP	T	T	C	rs221824	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZAN	.	.	.	.	.	.	511	26	136	0	T|0.981;C|0.019	142
ZC2HC1B	153918	bcgsc.ca	37	6	144258805	144258805	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001013623	exon7	c.T618C	p.A206A	.	.	77	4	72	0	.	.
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	.	.	376	6	73	0	.	515
ZC3H13	23091	hgsc.bcm.edu	37	13	46549613	46549614	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZC3H13	NM_015070	exon12	c.2272_2273del	p.758_758del	.	.	714	16	159	5	.	92
ZFP106	64397	hgsc.bcm.edu	37	15	42742957	42742957	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZFP106	NM_022473	exon2	c.1444delT	p.S482fs	.	.	598	12	145	2	.	515
ZFP1	162239	bcgsc.ca	37	16	75204196	75204196	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZFP1	NM_153688	exon4	c.T1188C	p.S396S	.	.	72	5	31	0	.	92
ZNF292	23036	bcgsc.ca	37	6	87969974	87969974	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF292	NM_015021	exon8	c.T6627C	p.A2209A	.	.	105	5	69	0	.	72
ZNF429	353088	bcgsc.ca	37	19	21713401	21713401	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF429	NM_001001415	exon3	c.T141C	p.V47V	.	.	172	6	89	0	.	516
ZNF468	90333	ucsc.edu	37	19	53344118	53344118	+	Missense_Mutation	SNP	C	C	G	rs10419826	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF468	NM_001008801	exon4	c.G1429C	p.G477R	.	.	190	82	45	3	C|0.485;G|0.515	92
ZNF470	388566	broad.mit.edu	37	19	57089092	57089092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF470	NM_001001668	exon6	c.A1295G	p.K432R	.	.	78	5	22	0	.	92
ZNF516	9658	broad.mit.edu	37	18	74154011	74154011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF516	NM_014643	exon3	c.T1000C	p.Y334H	.	.	83	4	41	0	.	69
ZNF527	84503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37879212	37879212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF527	NM_032453	exon5	c.G261T	p.W87C	.	.	240	92	88	0	.	70
ZNF705A	440077	ucsc.edu	37	12	8329833	8329833	+	Missense_Mutation	SNP	G	G	A	rs11043758	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF705A	NM_001004328	exon5	c.G557A	p.R186H	.	.	236	77	70	14	G|0.506;A|0.494	90
ZNF717	100131827	bcgsc.ca	37	3	75786620	75786620	+	Silent	SNP	G	G	A	rs144106206		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001128223	exon5	c.C2154T	p.F718F	.	.	79	13	36	0	.	.
ZNF717	100131827	bcgsc.ca	37	3	75786662	75786662	+	Missense_Mutation	SNP	A	A	T	rs202184453		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001128223	exon5	c.T2112A	p.N704K	.	.	81	17	35	0	.	.
ZNF98	148198	broad.mit.edu	37	19	22575421	22575421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF98	NM_001098626	exon4	c.G616A	p.G206R	.	.	681	19	142	0	.	24
ZNF98	148198	mdanderson.org	37	19	22575596	22575596	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF98	NM_001098626	exon4	c.A441G	p.T147T	.	.	750	51	148	3	.	24
LILRA6	79168	broad.mit.edu	37	19	54744854	54744855	+	Nonsense_Mutation	DNP	GG	GG	AA	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	GG	GG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	p.Q270*	.	.	.	.	.	.	.	
FLG2	388698	ucsc.edu	37	1	152324315	152324316	+	Missense_Mutation	DNP	AG	AG	GT	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	p.HY1982QH	.	.	.	.	.	.	.	
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525290	248525291	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	p.V137L	.	.	.	.	.	.	.	
SIMC1	375484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	175772304	175772305	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	p.FR825LS	.	.	.	.	.	.	.	
C5orf60	285679	broad.mit.edu	37	5	179071892	179071893	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CA	CA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	p.V44I	.	.	.	.	.	.	.	
CTD-2089O24.1	0	bcgsc.ca	37	5	110284399	110284400	+	RNA	DNP	CT	CT	TC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	.	.	.	.	.	.	.	
