Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87051459	87051459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCB4	NM_018850	exon18	c.C2294T	p.S765F	.	.	274	64	195	0	.	96
ABCB7	22	ucsc.edu;bcgsc.ca	37	X	74288850	74288850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCB7	NM_004299	exon12	c.G1654T	p.V552L	.	.	31	4	39	0	.	131
ABCG8	64241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	44099245	44099245	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCG8	NM_022437	exon7	c.G1095T	p.T365T	.	.	75	31	61	0	.	94
ABI3BP	25890	bcgsc.ca	37	3	100484732	100484732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABI3BP	NM_015429	exon30	c.G2670A	p.M890I	.	.	233	6	249	0	.	138
ACADL	33	bcgsc.ca	37	2	211081203	211081203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ACADL	NM_001608	exon4	c.G404T	p.S135I	.	.	88	4	81	0	.	90
ACIN1	22985	broad.mit.edu;bcgsc.ca	37	14	23549881	23549881	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ACIN1	NM_001164814	exon6	c.G837A	p.E279E	.	.	135	5	134	1	.	156
ADAMTS7	11173	bcgsc.ca	37	15	79058509	79058509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADAMTS7	NM_014272	exon19	c.C3744A	p.S1248R	.	.	36	4	46	0	.	226
ADAMTS9	56999	bcgsc.ca	37	3	64536618	64536618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADAMTS9	NM_182920	exon31	c.T4819C	p.C1607R	.	.	62	4	72	0	.	230
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64582656	64582656	+	Silent	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADAMTS9	NM_182920	exon27	c.C4029G	p.T1343T	.	.	60	33	72	0	.	230
ADAMTSL5	339366	ucsc.edu	37	19	1507404	1507404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADAMTSL5	NM_213604	exon9	c.C689A	p.A230E	.	.	25	4	24	0	.	90
ADCY10	55811	broad.mit.edu	37	1	167874303	167874303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADCY10	NM_018417	exon2	c.T76C	p.Y26H	.	.	298	5	270	0	.	493
ADNP	23394	bcgsc.ca	37	20	49508289	49508289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADNP	NM_015339	exon5	c.A2962G	p.T988A	.	.	99	4	112	1	.	92
ADORA3	140	bcgsc.ca	37	1	112042749	112042749	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADORA3	NM_000677	exon2	c.A780G	p.P260P	.	.	85	4	93	0	.	156
AEBP1	165	bcgsc.ca	37	7	44152915	44152915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AEBP1	NM_001129	exon20	c.T2774C	p.I925T	.	.	66	5	108	0	.	90
AGBL5	60509	bcgsc.ca	37	2	27276385	27276385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AGBL5	NM_021831	exon3	c.C331T	p.R111C	.	.	49	4	39	0	.	154
AGTPBP1	23287	bcgsc.ca	37	9	88193925	88193925	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AGTPBP1	NM_015239	exon24	c.A3132G	p.T1044T	.	.	86	5	104	0	.	158
AGTPBP1	23287	bcgsc.ca	37	9	88204573	88204573	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AGTPBP1	NM_015239	exon20	c.A2472G	p.S824S	.	.	67	4	77	0	.	158
AGTPBP1	23287	bcgsc.ca	37	9	88207521	88207521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AGTPBP1	NM_015239	exon19	c.T2402C	p.V801A	.	.	229	7	225	0	.	158
ALAD	210	mdanderson.org	37	9	116152886	116152886	+	Silent	SNP	C	C	A	rs41305619	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALAD	NM_000031	exon6	c.G468T	p.A156A	.	.	11	8	13	0	C|0.997;T|0.003	90
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74279198	74279198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALB	NM_000477	exon8	c.G905T	p.C302F	.	.	69	30	62	0	.	96
ALDH2	217	bcgsc.ca	37	12	112228278	112228278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALDH2	NM_000690	exon6	c.C593T	p.P198L	.	.	110	5	151	1	.	228
ALDH3B2	222	ucsc.edu;bcgsc.ca	37	11	67433076	67433076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALDH3B2	NM_001031615	exon7	c.A386G	p.E129G	.	.	44	5	58	0	.	226
ALG8	79053	bcgsc.ca	37	11	77815436	77815436	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALG8	NM_024079	exon11	c.T1242C	p.H414H	.	.	47	5	67	0	.	93
ALKBH7	84266	ucsc.edu	37	19	6374916	6374916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALKBH7	NM_032306	exon4	c.G598T	p.V200L	.	.	43	4	35	0	.	90
ALMS1	7840	bcgsc.ca	37	2	73718589	73718589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALMS1	NM_015120	exon10	c.A9500G	p.H3167R	.	.	147	5	139	0	.	142
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46455063	46455063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AMBRA1	NM_001267782	exon16	c.C2946A	p.F982L	.	.	26	4	40	0	.	136
ANK3	288	bcgsc.ca	37	10	61830025	61830025	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANK3	NM_020987	exon37	c.A10614G	p.K3538K	.	.	124	6	141	1	.	107
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73990633	73990633	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD17	NM_032217	exon18	c.G3489A	p.Q1163Q	.	.	45	18	57	0	.	234
ANKRD17	26057	ucsc.edu;bcgsc.ca	37	4	73981584	73981584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD17	NM_032217	exon23	c.C4238T	p.P1413L	.	.	45	4	40	0	.	234
ANKRD18A	253650	bcgsc.ca	37	9	38610313	38610313	+	Missense_Mutation	SNP	C	C	T	rs111973173	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD18A	NM_147195	exon5	c.G697A	p.G233S	.	.	141	5	157	0	.	92
ANKRD2	26287	bcgsc.ca	37	10	99343359	99343359	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD2	NM_020349	exon9	c.G960T	p.V320V	.	.	56	4	70	1	.	90
ANKRD32	84250	bcgsc.ca	37	5	94024315	94024315	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD32	NM_032290	exon17	c.A2226G	p.R742R	.	.	102	5	91	0	.	92
ANKS1A	23294	bcgsc.ca	37	6	34962111	34962111	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKS1A	NM_015245	exon10	c.T1335C	p.S445S	.	.	116	5	168	0	.	94
ANO3	63982	bcgsc.ca	37	11	26656574	26656574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANO3	NM_031418	exon20	c.C2000T	p.P667L	.	.	78	4	97	0	.	93
ANO6	196527	bcgsc.ca	37	12	45782018	45782018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANO6	NM_001204803	exon12	c.C1303A	p.Q435K	.	.	98	5	105	0	.	516
ANTXR2	118429	bcgsc.ca	37	4	80976314	80976314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANTXR2	NM_001145794	exon6	c.A545G	p.E182G	.	.	91	5	98	0	.	23
ANTXR2	118429	bcgsc.ca	37	4	80977158	80977158	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANTXR2	NM_001145794	exon4	c.C306T	p.I102I	.	.	59	4	58	0	.	23
ANTXR2	118429	bcgsc.ca	37	4	80977164	80977164	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANTXR2	NM_001145794	exon4	c.C300A	p.G100G	.	.	58	4	56	0	.	23
ANXA10	11199	bcgsc.ca	37	4	169086461	169086461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANXA10	NM_007193	exon6	c.T464A	p.L155H	.	.	108	5	136	0	.	90
ANXA2P3	305	bcgsc.ca	37	10	66585931	66585931	+	RNA	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	55	4	40	0	.	.
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79494388	79494388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANXA3	NM_005139	exon3	c.G70T	p.A24S	.	.	27	13	43	0	.	90
AP4E1	23431	bcgsc.ca	37	15	51289622	51289622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AP4E1	NM_007347	exon18	c.T2446C	p.S816P	.	.	135	5	153	1	.	90
AP4E1	23431	bcgsc.ca	37	15	51294705	51294705	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AP4E1	NM_007347	exon21	c.A3260T	p.E1087V	.	.	100	5	109	0	.	90
AP5S1	55317	bcgsc.ca	37	20	3804623	3804623	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001204446	exon3	c.A282G	p.P94P	.	.	19	3	29	0	.	.
APC	324	bcgsc.ca	37	5	112178415	112178415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	APC	NM_001127510	exon17	c.A7124G	p.Q2375R	.	.	76	4	76	0	.	12026
ARHGAP11A	9824	bcgsc.ca	37	15	32929865	32929865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGAP11A	NM_014783	exon12	c.A2891G	p.D964G	.	.	80	4	110	0	.	292
ARHGAP19	84986	bcgsc.ca	37	10	99003912	99003912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGAP19	NM_032900	exon8	c.A998G	p.D333G	.	.	45	4	42	0	.	651
ARHGAP28	79822	bcgsc.ca	37	18	6851113	6851113	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGAP28	NM_001010000	exon3	c.A147G	p.T49T	.	.	73	4	76	0	.	91
ARHGAP42	143872	bcgsc.ca	37	11	100830660	100830660	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_152432	exon13	c.A1209G	p.Q403Q	.	.	81	4	91	0	.	.
ARHGAP44	9912	bcgsc.ca	37	17	12859987	12859987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGAP44	NM_014859	exon15	c.G1266T	p.M422I	.	.	47	4	67	0	.	90
ARHGEF10L	55160	bcgsc.ca	37	1	17975138	17975138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGEF10L	NM_018125	exon22	c.C2362T	p.P788S	.	.	56	4	68	0	.	292
ARHGEF11	9826	bcgsc.ca	37	1	156928562	156928562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGEF11	NM_198236	exon17	c.A1474G	p.K492E	.	.	90	4	78	0	.	233
ARHGEF40	55701	ucsc.edu	37	14	21546410	21546410	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGEF40	NM_018071	exon9	c.A2109G	p.G703G	.	.	56	5	49	1	.	228
ARHGEF4	50649	ucsc.edu;bcgsc.ca	37	2	131673441	131673441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGEF4	.	.	.	.	.	.	43	5	46	0	.	292
ARL13A	392509	bcgsc.ca	37	X	100240711	100240711	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARL13A	NM_001162490	exon4	c.A186G	p.L62L	.	.	51	4	73	0	.	131
ARMC2	84071	bcgsc.ca	37	6	109258150	109258150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARMC2	NM_032131	exon12	c.C1544A	p.S515Y	.	.	60	4	49	0	.	68
ARSK	153642	bcgsc.ca	37	5	94927303	94927303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARSK	NM_198150	exon6	c.T1070C	p.L357P	.	.	105	5	101	0	.	91
ASAH2	56624	bcgsc.ca	37	10	52003027	52003027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ASAH2	NM_001143974	exon3	c.G445A	p.G149R	.	.	131	7	112	0	.	90
ASCC1	51008	bcgsc.ca	37	10	73956621	73956621	+	Missense_Mutation	SNP	A	A	G	rs148373391		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ASCC1	NM_001198799	exon6	c.T521C	p.V174A	.	.	93	4	104	0	A|1.000;G|0.000	226
ASH1L	55870	bcgsc.ca	37	1	155451522	155451522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ASH1L	NM_018489	exon3	c.T1139C	p.V380A	.	.	119	5	66	0	.	234
ASPH	444	bcgsc.ca	37	8	62563658	62563658	+	Silent	SNP	T	T	C	rs151310807	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ASPH	NM_001164754	exon5	c.A441G	p.A147A	.	.	117	5	137	0	T|1.000;G|0.000	93
ASTE1	28990	bcgsc.ca	37	3	130743841	130743841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ASTE1	NM_014065	exon3	c.C310T	p.H104Y	.	.	95	6	90	0	.	90
ASXL2	55252	bcgsc.ca	37	2	25966395	25966395	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ASXL2	NM_018263	exon12	c.A2811G	p.G937G	.	.	152	7	250	0	.	23
ATAD2	29028	bcgsc.ca	37	8	124383484	124383484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATAD2	NM_014109	exon5	c.A631G	p.T211A	.	.	246	7	224	1	.	92
ATAD5	79915	bcgsc.ca	37	17	29206482	29206482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATAD5	NM_024857	exon18	c.A4054G	p.I1352V	.	.	85	4	106	0	.	93
ATG13	9776	bcgsc.ca	37	11	46677814	46677814	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATG13	NM_001142673	exon8	c.T490C	p.L164L	.	.	72	4	120	1	.	68
ATP10A	57194	ucsc.edu	37	15	25963544	25963544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP10A	NM_024490	exon8	c.C1366T	p.Q456X	.	.	37	4	26	0	.	139
ATP13A4	84239	bcgsc.ca	37	3	193153462	193153462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP13A4	NM_032279	exon24	c.A2744G	p.Y915C	.	.	52	4	56	0	.	92
ATP1A3	478	ucsc.edu;bcgsc.ca	37	19	42492480	42492480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP1A3	NM_001256214	exon3	c.A182G	p.D61G	.	.	39	4	27	0	.	92
ATP2C2	9914	bcgsc.ca	37	16	84474504	84474504	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP2C2	NM_014861	exon14	c.T1251C	p.L417L	.	.	64	4	98	1	.	91
ATP6V1C1	528	bcgsc.ca	37	8	104078677	104078677	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP6V1C1	NM_001695	exon12	c.1053+2T>A	.	.	.	53	5	45	0	.	90
ATP8A2	51761	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	25946367	25946367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP8A2	NM_016529	exon1	c.G17T	p.G6V	.	.	26	14	30	0	.	138
ATR	545	bcgsc.ca	37	3	142215272	142215272	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATR	NM_001184	exon34	c.T5829C	p.A1943A	.	.	95	5	132	0	.	1139
AUTS2	26053	bcgsc.ca	37	7	70240341	70240341	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AUTS2	NM_001127231	exon12	c.1831-2A>G	.	.	.	73	4	54	0	.	92
AXL	558	bcgsc.ca	37	19	41748838	41748838	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AXL	NM_021913	exon11	c.C1363T	p.L455L	.	.	66	5	87	0	.	1403
BACE1	23621	ucsc.edu;bcgsc.ca	37	11	117164684	117164684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BACE1	NM_012104	exon4	c.A608G	p.K203R	.	.	37	4	46	0	.	91
BACE2	25825	bcgsc.ca	37	21	42609623	42609623	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BACE2	NM_138992	exon3	c.A585G	p.G195G	.	.	118	5	133	0	.	92
BAIAP3	8938	bcgsc.ca	37	16	1396655	1396655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BAIAP3	NM_003933	exon27	c.A2717G	p.N906S	.	.	50	4	60	0	.	91
BAMBI	25805	broad.mit.edu	37	10	28971091	28971091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BAMBI	NM_012342	exon3	c.A544G	p.R182G	.	.	63	4	69	0	.	652
BAZ1B	9031	bcgsc.ca	37	7	72873888	72873888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BAZ1B	NM_032408	exon13	c.A3410G	p.K1137R	.	.	189	6	152	0	.	159
BBS9	27241	bcgsc.ca	37	7	33376085	33376085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BBS9	NM_014451	exon10	c.A1049G	p.D350G	.	.	72	4	63	1	.	230
BCAM	4059	bcgsc.ca	37	19	45315738	45315738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BCAM	NM_001013257	exon4	c.A437G	p.K146R	.	.	81	5	83	0	.	91
BCL6	604	bcgsc.ca	37	3	187449586	187449586	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BCL6	NM_001134738	exon3	c.G294A	p.R98R	.	.	68	4	79	0	.	848
BCO2	83875	bcgsc.ca	37	11	112072818	112072818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BCO2	NM_031938	exon8	c.T1099C	p.C367R	.	.	105	5	118	1	.	68
BICD1	636	bcgsc.ca	37	12	32480461	32480461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BICD1	NM_001714	exon5	c.A1072G	p.K358E	.	.	58	4	66	0	.	153
BPTF	2186	bcgsc.ca	37	17	65900835	65900835	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BPTF	NM_004459	exon11	c.T3069C	p.G1023G	.	.	129	5	175	1	.	94
BRD8	10902	ucsc.edu;bcgsc.ca	37	5	137504197	137504197	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BRD8	NM_001164326	exon9	c.T823C	p.L275L	.	.	41	4	57	0	.	91
BRE	9577	bcgsc.ca	37	2	28460114	28460114	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BRE	NM_199191	exon8	c.A726G	p.G242G	.	.	81	5	104	0	.	228
BRWD3	254065	bcgsc.ca	37	X	79991537	79991537	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BRWD3	NM_153252	exon9	c.T864C	p.A288A	.	.	136	5	179	0	.	134
BTBD2	55643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1997425	1997425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BTBD2	NM_017797	exon2	c.A445G	p.M149V	.	.	27	15	38	0	.	92
BTBD7	55727	bcgsc.ca	37	14	93723550	93723550	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BTBD7	NM_001002860	exon6	c.A1599G	p.L533L	.	.	76	5	71	0	.	91
BTRC	8945	bcgsc.ca	37	10	103294503	103294503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BTRC	NM_033637	exon10	c.A1183G	p.M395V	.	.	73	4	124	0	.	659
BUB1B	701	bcgsc.ca	37	15	40457305	40457305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BUB1B	NM_001211	exon2	c.A87G	p.V29V	.	.	60	4	55	0	.	1509
C10orf12	26148	bcgsc.ca	37	10	98741209	98741209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C10orf12	NM_015652	exon1	c.A62G	p.E21G	.	.	72	5	79	0	.	92
C11orf30	56946	bcgsc.ca	37	11	76175097	76175097	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C11orf30	NM_020193	exon7	c.A804G	p.T268T	.	.	83	4	81	0	.	232
C11orf80	79703	bcgsc.ca	37	11	66589181	66589181	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_024650	exon12	c.T1404C	p.G468G	.	.	49	4	40	0	.	.
C12orf50	160419	bcgsc.ca	37	12	88391939	88391939	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C12orf50	NM_152589	exon4	c.A162G	p.E54E	.	.	67	4	98	0	.	93
C15orf41	84529	bcgsc.ca	37	15	37001479	37001479	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C15orf41	NM_001130010	exon9	c.A600G	p.Q200Q	.	.	92	4	74	0	.	46
C17orf104	284071	bcgsc.ca	37	17	42745184	42745184	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C17orf104	NM_001145080	exon5	c.A1905G	p.Q635Q	.	.	65	4	59	0	.	22
C17orf96	100170841	bcgsc.ca	37	17	36829964	36829964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001130677	exon1	c.C785A	p.A262D	.	.	29	4	44	0	.	.
C19orf66	55337	ucsc.edu	37	19	10202881	10202881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_018381	exon8	c.T779C	p.L260P	.	.	43	4	42	0	.	.
C1orf216	127703	bcgsc.ca	37	1	36181781	36181781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C1orf216	NM_152374	exon2	c.G142A	p.G48R	.	.	74	4	107	0	.	69
C1orf63	57035	bcgsc.ca	37	1	25572984	25572984	+	Silent	SNP	T	T	C	rs34484514	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C1orf63	NM_020317	exon2	c.A471G	p.R157R	.	.	66	4	46	0	T|0.975;G|0.025	91
C2orf71	388939	bcgsc.ca	37	2	29296044	29296044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C2orf71	NM_001029883	exon1	c.G1084T	p.V362L	.	.	81	5	100	0	.	91
C3orf35	339883	bcgsc.ca	37	3	37476474	37476474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C3orf35	NM_178339	exon6	c.A366T	p.K122N	.	.	67	4	69	0	.	112
C5AR2	27202	ucsc.edu;bcgsc.ca	37	19	47844239	47844239	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001271750	exon2	c.G183A	p.G61G	.	.	38	4	42	0	.	.
C6orf132	647024	bcgsc.ca	37	6	42075308	42075308	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001164446	exon4	c.A342G	p.L114L	.	.	50	4	66	0	.	.
C6orf136	221545	ucsc.edu;bcgsc.ca	37	6	30619102	30619102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C6orf136	NM_001161376	exon4	c.T1166C	p.F389S	.	.	39	4	41	0	.	90
C6orf170	221322	broad.mit.edu	37	6	121615804	121615804	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C6orf170	NM_152730	exon11	c.A1143G	p.V381V	.	.	164	9	147	2	.	92
C8orf76	84933	bcgsc.ca	37	8	124250052	124250052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C8orf76	NM_032847	exon3	c.A343G	p.I115V	.	.	54	4	80	0	.	228
C9orf170	401535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	89763702	89763702	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C9orf170	NM_001001709	exon1	c.G57T	p.G19G	.	.	27	14	34	0	.	90
C9orf173	441476	bcgsc.ca	37	9	140145751	140145751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C9orf173	NM_001256701	exon1	c.G13A	p.D5N	.	.	70	4	74	0	.	46
C9orf40	55071	bcgsc.ca	37	9	77562978	77562978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C9orf40	NM_017998	exon2	c.G571T	p.D191Y	.	.	101	5	105	1	.	90
C9orf96	169436	bcgsc.ca	37	9	136245967	136245967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C9orf96	NM_153710	exon2	c.A148G	p.T50A	.	.	77	5	89	1	.	334
CACNA1F	778	bcgsc.ca	37	X	49088225	49088225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CACNA1F	NM_001256789	exon2	c.A190G	p.S64G	.	.	66	4	68	0	.	176
CAD	790	bcgsc.ca	37	2	27449453	27449453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CAD	NM_004341	exon14	c.A2092G	p.T698A	.	.	75	4	69	0	.	295
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	85984981	85984981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CADM2	NM_001167675	exon7	c.G765T	p.L255F	.	.	213	93	218	0	.	228
CASC5	57082	bcgsc.ca	37	15	40913530	40913530	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CASC5	NM_170589	exon11	c.A1146G	p.K382K	.	.	72	4	65	0	.	660
CASQ1	844	ucsc.edu;bcgsc.ca	37	1	160165795	160165795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CASQ1	NM_001231	exon6	c.A760G	p.N254D	.	.	45	5	57	0	.	90
CATSPERG	57828	ucsc.edu;bcgsc.ca	37	19	38827958	38827958	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CATSPERG	NM_021185	exon2	c.G84T	p.V28V	.	.	46	4	38	0	.	92
CBL	867	bcgsc.ca	37	11	119155678	119155678	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CBL	NM_005188	exon10	c.1432-1G>A	.	.	.	63	4	72	0	.	4020
CCDC148	130940	bcgsc.ca	37	2	159214965	159214965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CCDC148	NM_138803	exon2	c.T143C	p.L48P	.	.	69	4	82	0	.	70
CCDC155	147872	bcgsc.ca	37	19	49910191	49910191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CCDC155	NM_144688	exon10	c.G847A	p.E283K	.	.	71	5	55	0	.	69
CCDC84	338657	bcgsc.ca	37	11	118885742	118885742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CCDC84	NM_198489	exon9	c.A754G	p.I252V	.	.	109	5	157	0	.	91
CCDC88C	440193	bcgsc.ca	37	14	91739247	91739247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CCDC88C	NM_001080414	exon30	c.G5809T	p.A1937S	.	.	49	5	78	0	.	25
CCDC94	55702	ucsc.edu	37	19	4249305	4249305	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CCDC94	NM_018074	exon2	c.G105T	p.L35L	.	.	24	4	37	0	.	90
CD300LF	146722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72700898	72700898	+	Missense_Mutation	SNP	C	C	A	rs146550147		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CD300LF	NM_139018	exon2	c.G101T	p.G34V	.	.	84	35	90	0	C|1.000;A|0.000	23
CDCP1	64866	bcgsc.ca	37	3	45127438	45127438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CDCP1	NM_022842	exon9	c.G2203A	p.A735T	.	.	60	4	63	0	.	117
CDH7	1005	bcgsc.ca	37	18	63477012	63477012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CDH7	NM_004361	exon3	c.T283C	p.F95L	.	.	81	5	122	0	.	94
CELF1	10658	bcgsc.ca	37	11	47504366	47504366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CELF1	NM_001172639	exon9	c.A646G	p.K216E	.	.	117	6	124	0	.	92
CELSR1	9620	bcgsc.ca	37	22	46762988	46762988	+	Missense_Mutation	SNP	C	C	T	rs75983687	byfrequency	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	CELSR1,NS,NS,0	CELSR1	NM_014246	exon29	c.G8107A	p.V2703M	.	.	52	4	55	0	C|0.966;T|0.034	525
CENPO	79172	bcgsc.ca	37	2	25040637	25040637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CENPO	NM_024322	exon7	c.A865G	p.R289G	.	.	98	4	133	0	.	91
CEP192	55125	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13103583	13103583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CEP192	NM_032142	exon39	c.T6947C	p.V2316A	.	.	39	4	53	0	.	27
CEP63	80254	bcgsc.ca	37	3	134278188	134278188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CEP63	NM_025180	exon15	c.C1870A	p.P624T	.	.	66	4	78	0	.	493
CGB7	94027	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49558233	49558233	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CGB7	NM_033142	exon2	c.C48T	p.G16G	.	.	21	9	21	0	.	90
CHST15	51363	ucsc.edu;bcgsc.ca	37	10	125805726	125805726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CHST15	NM_001270764	exon2	c.G3T	p.M1I	.	.	19	4	31	0	.	91
CIR1	9541	bcgsc.ca	37	2	175252485	175252485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CIR1	NM_004882	exon2	c.T95C	p.I32T	.	.	88	4	104	0	.	153
CKAP5	9793	bcgsc.ca	37	11	46773033	46773033	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CKAP5	NM_001008938	exon39	c.C5185T	p.L1729L	.	.	45	4	49	0	.	92
CKMT2	1160	bcgsc.ca	37	5	80546994	80546994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CKMT2	NM_001825	exon3	c.T43C	p.S15P	.	.	56	4	64	0	.	90
CLASRP	11129	bcgsc.ca	37	19	45563703	45563703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CLASRP	NM_007056	exon9	c.A767G	p.E256G	.	.	77	4	115	1	.	154
CLEC17A	388512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14705334	14705334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CLEC17A	NM_207390	exon5	c.A283T	p.S95C	.	.	66	31	57	0	.	22
CLEC4D	338339	bcgsc.ca	37	12	8671603	8671603	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CLEC4D	NM_080387	exon4	c.233-2A>G	.	.	.	55	4	65	0	.	90
CMYA5	202333	bcgsc.ca	37	5	79039669	79039669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CMYA5	NM_153610	exon3	c.T10658C	p.L3553P	.	.	49	4	53	0	.	77
CNGA2	1260	ucsc.edu	37	X	150908161	150908161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CNGA2	NM_005140	exon4	c.G331A	p.G111R	.	.	40	4	43	0	.	193
CNIH3	149111	bcgsc.ca	37	1	224872532	224872532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CNIH3	NM_152495	exon3	c.T185C	p.F62S	.	.	158	7	109	0	.	90
CNNM1	26507	ucsc.edu;bcgsc.ca	37	10	101120689	101120689	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CNNM1	NM_020348	exon3	c.C1815A	p.I605I	.	.	41	5	35	0	.	68
CNTN1	1272	bcgsc.ca	37	12	41337944	41337944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CNTN1	NM_001256063	exon14	c.A1655G	p.E552G	.	.	88	4	90	0	.	1149
CNTRL	11064	bcgsc.ca	37	9	123917031	123917031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CNTRL	NM_007018	exon25	c.T4205C	p.M1402T	.	.	82	4	62	0	.	661
COBLL1	22837	bcgsc.ca	37	2	165551306	165551306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COBLL1	NM_014900	exon12	c.T2710C	p.S904P	.	.	51	4	47	0	.	93
COG3	83548	bcgsc.ca	37	13	46067491	46067491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COG3	NM_031431	exon12	c.G1197T	p.L399F	.	.	161	6	200	1	.	154
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33144048	33144048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL11A2	NM_080680	exon28	c.T2202A	p.H734Q	.	.	82	36	81	0	.	95
COL16A1	1307	bcgsc.ca	37	1	32134423	32134423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL16A1	NM_001856	exon50	c.A3229G	p.T1077A	.	.	81	5	107	0	.	98
COL19A1	1310	ucsc.edu;bcgsc.ca	37	6	70916914	70916914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL19A1	NM_001858	exon51	c.G3365T	p.R1122I	.	.	20	4	35	0	.	156
COL4A4	1286	bcgsc.ca	37	2	227963441	227963441	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL4A4	NM_000092	exon19	c.T1173C	p.G391G	.	.	57	5	76	0	.	142
COL4A5	1287	broad.mit.edu	37	X	107844710	107844710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL4A5	NM_000495	exon26	c.T2036C	p.L679P	.	.	64	4	83	0	.	133
COL6A5	256076	bcgsc.ca	37	3	130137772	130137772	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_153264	exon25	c.A4947G	p.R1649R	.	.	64	4	51	0	.	.
COPS2	9318	bcgsc.ca	37	15	49421700	49421700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COPS2	NM_001143887	exon11	c.A1123G	p.R375G	.	.	222	6	291	0	.	227
COPS3	8533	bcgsc.ca	37	17	17179468	17179468	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COPS3	NM_003653	exon2	c.A66G	p.T22T	.	.	83	4	80	0	.	226
CORIN	10699	bcgsc.ca	37	4	47788862	47788862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CORIN	NM_006587	exon3	c.A289G	p.I97V	.	.	80	4	116	0	.	91
CPLX4	339302	bcgsc.ca	37	18	56979993	56979993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CPLX4	NM_181654	exon2	c.A179G	p.D60G	.	.	60	5	73	0	.	91
CPT1B	1375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51010728	51010728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CPT1B	NM_001145135	exon12	c.C1362G	p.D454E	.	.	34	16	54	0	.	116
CSMD2	114784	bcgsc.ca	37	1	34089014	34089014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CSMD2	NM_052896	exon36	c.T5558C	p.F1853S	.	.	54	4	82	0	.	103
CST7	8530	ucsc.edu;bcgsc.ca	37	20	24939666	24939666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CST7	NM_003650	exon3	c.C346T	p.H116Y	.	.	37	4	40	0	.	91
CTBS	1486	bcgsc.ca	37	1	85020781	85020781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CTBS	NM_004388	exon7	c.G1059A	p.M353I	.	.	90	5	138	1	.	90
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	bycluster	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.C122T	p.T41I	.	.	111	53	121	0	.	24361
CUL2	8453	bcgsc.ca	37	10	35322157	35322157	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CUL2	NM_001198778	exon11	c.A1104G	p.K368K	.	.	34	4	52	0	.	229
CUZD1	50624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124605313	124605313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CUZD1	NM_022034	exon1	c.C47T	p.S16F	.	.	20	7	34	0	.	92
CXorf22	170063	bcgsc.ca	37	X	35959496	35959496	+	Silent	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CXorf22	NM_152632	exon3	c.T498A	p.T166T	.	.	85	4	57	0	.	131
CXorf23	256643	bcgsc.ca	37	X	19953958	19953958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CXorf23	NM_198279	exon9	c.A1832G	p.N611S	.	.	94	5	115	0	.	130
CYBASC3	220002	bcgsc.ca	37	11	61118614	61118614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CYBASC3	NM_001161454	exon7	c.A605G	p.N202S	.	.	57	4	68	0	.	90
CYP7A1	1581	bcgsc.ca	37	8	59411017	59411017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CYP7A1	NM_000780	exon2	c.A92T	p.E31V	.	.	58	4	59	0	.	91
DBI	1622	bcgsc.ca	37	2	120129835	120129835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DBI	NM_001178017	exon4	c.G388A	p.D130N	.	.	59	4	39	0	.	90
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167971772	167971772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCAF6	NM_001198956	exon8	c.C956T	p.T319I	.	.	237	64	234	0	.	516
DCHS2	54798	bcgsc.ca	37	4	155242156	155242156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCHS2	NM_017639	exon14	c.G3030T	p.K1010N	.	.	147	5	194	0	.	94
DCLK2	166614	bcgsc.ca	37	4	151170816	151170816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCLK2	NM_001040261	exon16	c.A2104G	p.T702A	.	.	61	4	75	1	.	300
DCN	1634	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	91558424	91558424	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCN	NM_001920	exon3	c.282delC	p.T94fs	.	.	145	60	206	0	.	555
DDHD1	80821	bcgsc.ca	37	14	53529892	53529892	+	Missense_Mutation	SNP	C	C	A	rs146473667	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DDHD1	NM_001160147	exon8	c.G1556T	p.R519L	.	.	34	4	39	0	C|1.000;T|0.000	92
DDX1	1653	bcgsc.ca	37	2	15739830	15739830	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DDX1	NM_004939	exon6	c.A297G	p.G99G	.	.	155	5	166	0	.	253
DENND2C	163259	bcgsc.ca	37	1	115138459	115138459	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DENND2C	NM_001256404	exon17	c.A2319G	p.L773L	.	.	58	4	76	0	.	229
DENND4A	10260	bcgsc.ca	37	15	66015242	66015242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DENND4A	NM_001144823	exon12	c.A1532G	p.K511R	.	.	116	5	134	1	.	229
DEPDC4	120863	ucsc.edu;bcgsc.ca	37	12	100660700	100660700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DEPDC4	NM_152317	exon1	c.C155T	p.T52I	.	.	19	4	37	0	.	90
DHRS7C	201140	ucsc.edu;bcgsc.ca	37	17	9683305	9683305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001220493	exon3	c.T318C	p.C106C	.	.	42	4	55	0	.	.
DIS3L2	129563	bcgsc.ca	37	2	233075115	233075115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DIS3L2	NM_152383	exon10	c.G1204T	p.G402C	.	.	74	4	69	0	.	136
DIXDC1	85458	bcgsc.ca	37	11	111887428	111887428	+	Silent	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DIXDC1	.	.	.	.	.	.	60	4	72	0	.	91
DLX4	1748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	48046980	48046980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DLX4	NM_138281	exon1	c.C148T	p.P50S	.	.	26	12	33	0	.	90
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124377824	124377824	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH10	NM_207437	exon52	c.C8686T	p.L2896L	.	.	67	28	90	0	.	95
DNAH14	127602	bcgsc.ca	37	1	225155270	225155270	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH14	NM_144989	exon6	c.T636C	p.A212A	.	.	198	6	143	0	.	23
DNAH2	146754	bcgsc.ca	37	17	7673903	7673903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH2	NM_020877	exon25	c.A4127G	p.D1376G	.	.	52	4	43	0	.	102
DNAH2	146754	bcgsc.ca	37	17	7722077	7722077	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH2	NM_020877	exon69	c.G10653A	p.L3551L	.	.	51	4	47	0	.	102
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7734001	7734001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH2	NM_020877	exon78	c.A12071G	p.Y4024C	.	.	62	24	99	0	.	102
DNAH6	1768	bcgsc.ca	37	2	85008643	85008643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH6	NM_001370	exon65	c.G10730A	p.G3577E	.	.	90	4	113	0	.	69
DNAH8	1769	bcgsc.ca	37	6	38770980	38770980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH8	NM_001206927	exon22	c.T2927C	p.I976T	.	.	133	5	110	0	.	615
DNAJC13	23317	bcgsc.ca	37	3	132203513	132203513	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAJC13	NM_015268	exon29	c.T3264C	p.I1088I	.	.	66	4	66	0	.	272
DNALI1	7802	ucsc.edu;bcgsc.ca	37	1	38024944	38024944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNALI1	NM_003462	exon3	c.A310G	p.T104A	.	.	26	5	29	0	.	154
DNM3	26052	bcgsc.ca	37	1	172348198	172348198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNM3	NM_015569	exon18	c.T1934C	p.M645T	.	.	223	6	180	0	.	90
DNMBP	23268	bcgsc.ca	37	10	101656026	101656026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNMBP	NM_015221	exon10	c.C3049A	p.Q1017K	.	.	72	4	74	0	.	233
DNMBP	23268	bcgsc.ca	37	10	101659734	101659734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNMBP	NM_015221	exon7	c.A2644G	p.I882V	.	.	80	5	95	0	.	233
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	128850978	128850978	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DOCK1	NM_001380	exon22	c.C2172T	p.D724D	.	.	70	28	70	0	.	698
DOCK2	1794	bcgsc.ca	37	5	169144444	169144444	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DOCK2	NM_004946	exon21	c.G2088A	p.L696L	.	.	66	4	72	0	.	97
DOCK9	23348	bcgsc.ca	37	13	99575598	99575598	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DOCK9	NM_001130049	exon5	c.A447G	p.P149P	.	.	69	4	70	0	.	90
DOPEY1	23033	bcgsc.ca	37	6	83806723	83806723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DOPEY1	NM_015018	exon3	c.G27T	p.L9F	.	.	78	4	111	0	.	155
DPY19L4	286148	bcgsc.ca	37	8	95768263	95768263	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DPY19L4	NM_181787	exon7	c.612-1G>T	.	.	.	115	6	131	0	.	92
DSP	1832	bcgsc.ca	37	6	7562906	7562906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DSP	NM_004415	exon5	c.T619C	p.W207R	.	.	77	6	98	0	.	518
DTNA	1837	bcgsc.ca	37	18	32464703	32464703	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DTNA	NM_001390	exon21	c.A2226G	p.Q742Q	.	.	129	5	140	0	.	153
DUOXA2	405753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45408389	45408389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DUOXA2	NM_207581	exon3	c.C273A	p.S91R	.	.	43	26	41	0	.	226
DYNC1H1	1778	ucsc.edu	37	14	102478672	102478672	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DYNC1H1	NM_001376	exon34	c.C6879T	p.G2293G	.	.	32	4	41	0	.	98
DYNC2H1	79659	bcgsc.ca	37	11	103022927	103022927	+	Silent	SNP	A	A	G	rs202031200		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DYNC2H1	NM_001377	exon21	c.A3009G	p.G1003G	.	.	57	8	88	3	A|0.997;G|0.003	68
DYNC2H1	79659	bcgsc.ca	37	11	103075661	103075661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DYNC2H1	NM_001377	exon52	c.A8422G	p.M2808V	.	.	75	5	63	0	.	68
EDC4	23644	bcgsc.ca	37	16	67917569	67917569	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EDC4	NM_014329	exon28	c.T3948C	p.P1316P	.	.	57	4	70	0	.	92
EEF1A2	1917	ucsc.edu;mdanderson.org	37	20	62122018	62122018	+	Silent	SNP	C	C	A	rs139282309	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EEF1A2	NM_001958	exon6	c.G843T	p.A281A	.	.	17	10	13	0	C|1.000;T|0.000	90
EIF3A	8661	bcgsc.ca	37	10	120818744	120818744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EIF3A	NM_003750	exon11	c.A1609G	p.I537V	.	.	64	4	92	0	.	226
EIF3C	8663	hgsc.bcm.edu	37	16	28403104	28403104	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EIF3C	NM_003752	exon10	c.1012delC	p.L338fs	.	.	650	67	808	0	.	1
EIF3C	8663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	28734840	28734840	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EIF3C	NM_001199142	exon10	c.1008delG	p.E336fs	.	.	733	112	802	0	.	1
EIF3E	3646	bcgsc.ca	37	8	109215709	109215709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EIF3E	NM_001568	exon11	c.T1085C	p.M362T	.	.	190	6	247	0	.	188
EML2	24139	ucsc.edu;bcgsc.ca	37	19	46112992	46112992	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EML2	NM_001193268	exon22	c.T2482C	p.L828L	.	.	41	4	35	0	.	154
EML3	256364	bcgsc.ca	37	11	62376067	62376067	+	Missense_Mutation	SNP	T	T	C	rs141649608	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EML3	NM_153265	exon9	c.A1057G	p.I353V	.	.	42	4	72	0	T|1.000;A|0.000	91
EML5	161436	bcgsc.ca	37	14	89181447	89181447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EML5	NM_183387	exon9	c.G1280T	p.C427F	.	.	84	4	75	0	.	93
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41560092	41560092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EP300	NM_001429	exon22	c.A3764T	p.H1255L	.	.	217	98	232	0	.	2011
EPB41L5	57669	ucsc.edu;bcgsc.ca	37	2	120834553	120834553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EPB41L5	NM_020909	exon8	c.T512C	p.L171P	.	.	39	4	48	0	.	91
ERAP1	51752	bcgsc.ca	37	5	96129106	96129106	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ERAP1	NM_001198541	exon7	c.A1185G	p.K395K	.	.	137	5	144	0	.	70
ERCC6L2	375748	bcgsc.ca	37	9	98660132	98660132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001010895	exon3	c.T506C	p.V169A	.	.	96	5	100	0	.	.
ERCC8	1161	bcgsc.ca	37	5	60186761	60186761	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ERCC8	NM_000082	exon10	c.A996G	p.G332G	.	.	72	4	78	0	.	227
ERP27	121506	bcgsc.ca	37	12	15073950	15073950	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ERP27	NM_152321	exon4	c.A366G	p.E122E	.	.	134	5	146	0	.	153
EVI5L	115704	bcgsc.ca	37	19	7916410	7916410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EVI5L	NM_001159944	exon6	c.A844G	p.T282A	.	.	151	7	181	2	.	91
EXPH5	23086	bcgsc.ca	37	11	108384217	108384217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EXPH5	NM_015065	exon6	c.A2017G	p.T673A	.	.	118	5	103	0	.	95
EZR	7430	bcgsc.ca	37	6	159192432	159192432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EZR	NM_003379	exon8	c.T803C	p.V268A	.	.	55	4	61	0	.	70
FAM161B	145483	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74409115	74409115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM161B	NM_152445	exon4	c.A1418T	p.H473L	.	.	193	75	227	2	.	91
FAM169A	26049	bcgsc.ca	37	5	74100432	74100432	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM169A	NM_015566	exon9	c.800-2A>G	.	.	.	45	4	45	0	.	22
FAM188B	84182	bcgsc.ca	37	7	30880384	30880384	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM188B	NM_032222	exon9	c.T1365C	p.P455P	.	.	46	4	45	0	.	90
FAM206A	54942	bcgsc.ca	37	9	111701855	111701855	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_017832	exon6	c.T435C	p.V145V	.	.	141	5	150	0	.	.
FAM24B	196792	bcgsc.ca	37	10	124608943	124608943	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM24B	NM_152644	exon4	c.A105G	p.E35E	.	.	108	6	128	0	.	90
FAM76A	199870	bcgsc.ca	37	1	28081757	28081757	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM76A	NM_001143912	exon8	c.C753T	p.I251I	.	.	82	4	73	0	.	90
FAM83E	54854	ucsc.edu;bcgsc.ca	37	19	49113247	49113247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM83E	NM_017708	exon3	c.T644C	p.V215A	.	.	28	4	35	0	.	91
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	98896898	98896898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FARP1	NM_001001715	exon3	c.A325G	p.T109A	.	.	57	32	57	0	.	290
FASTKD5	60493	bcgsc.ca	37	20	3128159	3128159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FASTKD5	NM_021826	exon2	c.A1558T	p.T520S	.	.	61	4	83	1	.	90
FAT4	79633	bcgsc.ca	37	4	126239793	126239793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAT4	NM_024582	exon1	c.G2227T	p.G743W	.	.	129	5	141	0	.	108
FBN3	84467	broad.mit.edu	37	19	8154513	8154513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBN3	NM_032447	exon50	c.G6292A	p.G2098S	.	.	40	4	41	0	.	100
FBXL17	64839	bcgsc.ca	37	5	107703534	107703534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXL17	NM_001163315	exon2	c.C1114A	p.Q372K	.	.	63	5	65	0	.	226
FBXL4	26235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99322272	99322272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXL4	NM_012160	exon9	c.C1748A	p.S583Y	.	.	108	49	116	0	.	227
FBXO10	26267	bcgsc.ca	37	9	37512673	37512673	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXO10	NM_012166	exon11	c.T2742C	p.L914L	.	.	62	4	68	0	.	637
FBXO15	201456	bcgsc.ca	37	18	71807466	71807466	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXO15	NM_001142958	exon2	c.T198C	p.S66S	.	.	15	4	40	0	.	229
FBXO3	26273	bcgsc.ca	37	11	33772083	33772083	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXO3	NM_012175	exon9	c.932+2T>C	.	.	.	62	5	74	0	.	227
FBXW12	285231	bcgsc.ca	37	3	48415144	48415144	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXW12	NM_207102	exon4	c.T235C	p.L79L	.	.	78	4	70	0	.	226
FECH	2235	bcgsc.ca	37	18	55240486	55240486	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FECH	NM_001012515	exon3	c.T324C	p.P108P	.	.	86	4	104	0	.	90
FER1L5	90342	broad.mit.edu;mdanderson.org	37	2	97359397	97359397	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FER1L5	NM_001113382	exon31	c.G3528A	p.V1176V	.	.	25	12	18	0	.	23
FER1L6	654463	bcgsc.ca	37	8	125088494	125088494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FER1L6	NM_001039112	exon32	c.T4148C	p.I1383T	.	.	78	5	78	0	.	100
FLJ35282	0	bcgsc.ca	37	9	22747942	22747942	+	RNA	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	69	4	57	0	.	.
FMR1	2332	bcgsc.ca	37	X	147024653	147024653	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FMR1	NM_002024	exon14	c.A1278G	p.E426E	.	.	78	4	96	0	.	133
FOCAD	54914	bcgsc.ca	37	9	20781849	20781849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_017794	exon12	c.A1118G	p.E373G	.	.	80	4	91	0	.	.
FOXJ2	55810	bcgsc.ca	37	12	8203164	8203164	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FOXJ2	NM_018416	exon10	c.A1584G	p.P528P	.	.	48	4	55	0	.	230
FRMD4A	55691	bcgsc.ca	37	10	13735983	13735983	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FRMD4A	NM_018027	exon15	c.G1032T	p.T344T	.	.	35	4	65	0	.	229
FZD4	8322	ucsc.edu;bcgsc.ca	37	11	86662521	86662521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FZD4	NM_012193	exon2	c.A1277G	p.K426R	.	.	31	4	44	0	.	1145
GABRA2	2555	hgsc.bcm.edu;bcgsc.ca	37	4	46390684	46390684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GABRA2	NM_000807	exon2	c.C40A	p.L14I	.	.	309	139	302	1	.	94
GABRA2	2555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	46390679	46390679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GABRA2	NM_000807	exon2	c.45delT	p.F15fs	.	.	316	137	308	0	.	94
GALC	2581	bcgsc.ca	37	14	88416240	88416240	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GALC	NM_000153	exon12	c.A1287G	p.K429K	.	.	73	4	52	0	.	90
GANAB	23193	bcgsc.ca	37	11	62398512	62398512	+	Silent	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GANAB	NM_198335	exon11	c.T1206A	p.A402A	.	.	67	4	72	0	.	94
GART	2618	bcgsc.ca	37	21	34877938	34877938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GART	NM_001136005	exon20	c.C2655A	p.F885L	.	.	80	4	94	0	.	91
GAS2L1	10634	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29704470	29704470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GAS2L1	NM_152237	exon2	c.G375T	p.E125D	.	.	18	6	30	0	.	90
GDNF	2668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37815756	37815756	+	Silent	SNP	G	G	A	rs121918536	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GDNF	NM_001190468	exon3	c.C684T	p.I228I	.	.	93	25	112	0	.	90
GDPD2	54857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69644840	69644840	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GDPD2	NM_017711	exon2	c.C6T	p.A2A	.	.	45	43	46	0	.	132
GLB1L2	89944	bcgsc.ca	37	11	134241687	134241687	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GLB1L2	NM_138342	exon15	c.A1470G	p.R490R	.	.	29	4	48	0	.	25
GLDC	2731	bcgsc.ca	37	9	6605276	6605276	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GLDC	NM_000170	exon6	c.A716T	p.Y239F	.	.	60	4	80	0	.	92
GLTSCR1L	23506	bcgsc.ca	37	6	42796692	42796692	+	Silent	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_015349	exon5	c.T621A	p.I207I	.	.	77	4	85	0	.	.
GLUD1	2746	ucsc.edu;bcgsc.ca	37	10	88813145	88813145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GLUD1	NM_005271	exon12	c.A1511G	p.D504G	.	.	40	4	42	0	.	90
GMEB1	10691	bcgsc.ca	37	1	29030830	29030830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GMEB1	NM_006582	exon8	c.T887C	p.F296S	.	.	58	4	72	0	.	90
GPD1	2819	bcgsc.ca	37	12	50501490	50501490	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GPD1	NM_005276	exon6	c.C753T	p.T251T	.	.	134	6	156	0	.	90
GPR128	84873	bcgsc.ca	37	3	100387933	100387933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GPR128	NM_032787	exon15	c.T2120C	p.L707P	.	.	154	5	175	0	.	94
GPSM3	63940	bcgsc.ca	37	6	32159506	32159506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GPSM3	NM_022107	exon7	c.A325G	p.S109G	.	.	90	5	129	1	.	90
GRAMD1C	54762	bcgsc.ca	37	3	113588440	113588440	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GRAMD1C	NM_017577	exon3	c.259+2T>A	.	.	.	217	8	227	0	.	93
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	125819257	125819257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GRAMD3	NM_001146319	exon9	c.A883C	p.N295H	.	.	43	18	39	0	.	90
GSK3A	2931	bcgsc.ca	37	19	42744212	42744212	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	GSK3A,NS,carcinoma,0	GSK3A	NM_019884	exon2	c.C366A	p.I122I	.	.	51	4	91	1	.	981
GTF2H3	2967	bcgsc.ca	37	12	124135556	124135556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GTF2H3	NM_001516	exon5	c.A380G	p.Q127R	.	.	55	4	48	0	.	659
GTF3A	2971	ucsc.edu;bcgsc.ca	37	13	28009317	28009317	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_002097	exon8	c.A921G	p.K307K	.	.	38	4	58	0	.	.
GUCY1A2	2977	bcgsc.ca	37	11	106579386	106579386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GUCY1A2	NM_001256424	exon8	c.A1936G	p.I646V	.	.	52	4	56	0	.	589
HACL1	26061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15604875	15604875	+	Missense_Mutation	SNP	C	C	G	rs149555880	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HACL1	NM_012260	exon16	c.G1694C	p.R565P	.	.	259	132	327	0	C|1.000;T|0.000	90
HADHA	3030	bcgsc.ca	37	2	26437410	26437410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HADHA	NM_000182	exon9	c.A820G	p.T274A	.	.	88	4	128	0	.	91
HARBI1	283254	ucsc.edu	37	11	46637357	46637357	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HARBI1	NM_173811	exon2	c.T431G	p.V144G	.	.	44	6	44	1	.	90
HCAR1	27198	ucsc.edu;bcgsc.ca	37	12	123214801	123214801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HCAR1	NM_032554	exon1	c.G86A	p.G29D	.	.	43	4	41	0	.	156
HECA	51696	bcgsc.ca	37	6	139495545	139495545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HECA	NM_016217	exon3	c.G1336A	p.V446M	.	.	66	4	64	0	.	90
HELQ	113510	ucsc.edu;bcgsc.ca	37	4	84353404	84353404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HELQ	NM_133636	exon10	c.C2065A	p.P689T	.	.	39	4	45	0	.	155
HELZ	9931	bcgsc.ca	37	17	65199449	65199449	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HELZ	NM_014877	exon6	c.A358T	p.T120S	.	.	49	4	47	0	.	92
HERC1	8925	bcgsc.ca	37	15	63937732	63937732	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HERC1	NM_003922	exon56	c.T11028C	p.A3676A	.	.	64	5	100	0	.	666
HGF	3082	bcgsc.ca	37	7	81350157	81350157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HGF	NM_000601	exon10	c.A1175G	p.Y392C	.	.	133	5	110	0	.	516
HIPK4	147746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40895613	40895613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HIPK4	NM_144685	exon1	c.A197G	p.D66G	.	.	70	33	118	0	.	334
HIRA	7290	ucsc.edu	37	22	19393344	19393344	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HIRA	NM_003325	exon5	c.G362A	p.W121X	.	.	34	4	67	0	.	91
HIRIP3	8479	bcgsc.ca	37	16	30005799	30005799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HIRIP3	NM_003609	exon4	c.A667G	p.S223G	.	.	225	8	237	0	.	90
HIVEP1	3096	bcgsc.ca	37	6	12121112	12121112	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HIVEP1	NM_002114	exon4	c.C1084G	p.P362A	.	.	62	5	51	0	.	139
HIVEP2	3097	bcgsc.ca	37	6	143090924	143090924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HIVEP2	NM_006734	exon5	c.T4952C	p.F1651S	.	.	82	4	84	0	.	95
HLA-B	3106	bcgsc.ca	37	6	31324702	31324702	+	Missense_Mutation	SNP	C	C	T	rs1050486		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HLA-B	NM_005514	exon2	c.G106A	p.V36M	.	.	28	9	28	2	C|0.394;T|0.606	90
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118963906	118963907	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HMBS	NM_000190	exon14	c.999_1000del	p.333_334del	.	.	31	14	26	0	.	90
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186097385	186097385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HMCN1	NM_031935	exon83	c.C12866T	p.P4289L	.	.	57	23	37	0	.	113
HNRNPUL2	221092	bcgsc.ca	37	11	62487655	62487655	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HNRNPUL2	NM_001079559	exon10	c.G1620T	p.V540V	.	.	68	5	88	0	.	22
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62491884	62491884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HNRNPUL2	NM_001079559	exon2	c.A553C	p.S185R	.	.	88	42	122	0	.	22
HPS5	11234	bcgsc.ca	37	11	18332984	18332984	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HPS5	NM_181507	exon4	c.T234C	p.S78S	.	.	228	7	281	2	.	133
HSF1	3297	bcgsc.ca	37	8	145533149	145533149	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HSF1	NM_005526	exon3	c.C235A	p.R79R	.	.	65	4	61	0	.	46
HUS1B	135458	bcgsc.ca	37	6	656191	656191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HUS1B	NM_148959	exon1	c.T754C	p.C252R	.	.	67	4	76	0	.	227
ICAM5	7087	mdanderson.org	37	19	10402010	10402010	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ICAM5	NM_003259	exon2	c.C345A	p.R115R	.	.	36	14	39	1	.	153
IFT172	26160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27688641	27688641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IFT172	NM_015662	exon17	c.A1801C	p.T601P	.	.	67	33	75	0	.	154
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99491869	99491869	+	Missense_Mutation	SNP	C	C	G	rs45598038	bycluster;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IGF1R	NM_000875	exon20	c.C3654G	p.N1218K	.	.	31	14	27	0	.	1490
IGF2BP3	10643	bcgsc.ca	37	7	23401332	23401332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IGF2BP3	NM_006547	exon4	c.G314T	p.G105V	.	.	52	5	69	0	.	92
IGFN1	91156	bcgsc.ca	37	1	201181875	201181875	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IGFN1	NM_001164586	exon12	c.A7854G	p.R2618R	.	.	99	5	56	0	.	71
IL13RA2	3598	bcgsc.ca	37	X	114250303	114250303	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IL13RA2	NM_000640	exon3	c.T176A	p.L59Q	.	.	68	4	53	0	.	132
IL1RL2	8808	bcgsc.ca	37	2	102842463	102842463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IL1RL2	NM_003854	exon9	c.G1097T	p.W366L	.	.	82	7	133	0	.	92
IL21R	50615	bcgsc.ca	37	16	27454309	27454309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IL21R	NM_181079	exon6	c.A445G	p.T149A	.	.	57	5	105	0	.	660
IL7R	3575	bcgsc.ca	37	5	35876281	35876281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IL7R	NM_002185	exon8	c.C1073A	p.P358Q	.	.	58	4	71	0	.	157
INHBE	83729	ucsc.edu;bcgsc.ca	37	12	57849918	57849918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	INHBE	NM_031479	exon2	c.T340C	p.S114P	.	.	45	5	55	1	.	577
INO80D	54891	bcgsc.ca	37	2	206921005	206921005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	INO80D	NM_017759	exon4	c.T881C	p.F294S	.	.	110	6	83	0	.	91
INTS3	65123	bcgsc.ca	37	1	153724885	153724885	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	INTS3	NM_023015	exon8	c.859+1G>A	.	.	.	123	5	82	0	.	93
ITFG2	55846	bcgsc.ca	37	12	2927370	2927370	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ITFG2	NM_018463	exon4	c.C333A	p.I111I	.	.	48	4	69	0	.	90
ITGA2B	3674	bcgsc.ca	37	17	42456065	42456065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ITGA2B	NM_000419	exon19	c.T1892C	p.L631P	.	.	95	5	133	0	.	228
ITGB8	3696	bcgsc.ca	37	7	20449250	20449250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ITGB8	NM_002214	exon13	c.G2036T	p.S679I	.	.	54	4	63	0	.	227
ITM2A	9452	bcgsc.ca	37	X	78618984	78618984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ITM2A	NM_004867	exon2	c.T179C	p.L60P	.	.	118	6	144	0	.	131
ITPR1	3708	bcgsc.ca	37	3	4709082	4709082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ITPR1	NM_001099952	exon18	c.G1735T	p.G579C	.	.	59	4	58	0	.	710
ITPR2	3709	bcgsc.ca	37	12	26648134	26648134	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ITPR2	NM_002223	exon38	c.T5133C	p.G1711G	.	.	86	4	89	0	.	542
ITPR2	3709	bcgsc.ca	37	12	26703191	26703191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ITPR2	NM_002223	exon37	c.T5062C	p.F1688L	.	.	49	4	42	0	.	542
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	17950393	17950393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	JAK3	NM_000215	exon10	c.G1334A	p.R445Q	.	.	20	8	15	0	.	2418
KALRN	8997	bcgsc.ca	37	3	124378302	124378302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KALRN	NM_001024660	exon43	c.A6211G	p.K2071E	.	.	132	5	113	0	.	738
KAT6B	23522	ucsc.edu;bcgsc.ca	37	10	76603214	76603214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_012330	exon3	c.T599C	p.L200P	.	.	43	4	52	0	.	.
KCNA7	3743	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49573841	49573841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCNA7	NM_031886	exon2	c.C850T	p.R284C	.	.	28	7	33	0	.	90
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	19554731	19554731	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCNH8	NM_144633	exon13	c.C2349T	p.P783P	.	.	99	31	130	0	.	524
KCNQ2	3785	bcgsc.ca	37	20	62038586	62038586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCNQ2	NM_172107	exon17	c.G2030A	p.R677Q	.	.	31	4	48	0	.	92
KCTD21	283219	bcgsc.ca	37	11	77885556	77885556	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCTD21	NM_001029859	exon2	c.A45G	p.T15T	.	.	64	4	73	0	.	69
KCTD5	54442	ucsc.edu;bcgsc.ca	37	16	2732726	2732726	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCTD5	NM_018992	exon1	c.G177A	p.R59R	.	.	43	4	61	0	.	90
KDR	3791	bcgsc.ca	37	4	55961042	55961042	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KDR	NM_002253	exon21	c.C2898A	p.I966I	.	.	91	5	95	0	.	2298
KIAA0020	9933	bcgsc.ca	37	9	2831285	2831285	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA0020	NM_014878	exon6	c.A576G	p.E192E	.	.	150	6	151	0	.	91
KIAA0317	9870	bcgsc.ca	37	14	75139874	75139874	+	Silent	SNP	C	C	T	rs202100309	byfrequency	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA0317	NM_001039479	exon10	c.G1206A	p.V402V	.	.	58	4	57	0	C|0.998;T|0.002	525
KIAA0317	9870	bcgsc.ca	37	14	75140740	75140740	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA0317	NM_001039479	exon9	c.A1155G	p.T385T	.	.	46	4	51	0	.	525
KIAA0825	285600	bcgsc.ca	37	5	93820596	93820596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA0825	NM_001145678	exon6	c.T1010C	p.L337P	.	.	82	4	113	0	.	91
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105557965	105557965	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA1033	NM_015275	exon31	c.G3234A	p.E1078E	.	.	77	31	106	0	.	91
KIAA1109	84162	bcgsc.ca	37	4	123227051	123227051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA1109	NM_015312	exon55	c.C9692T	p.S3231F	.	.	30	4	39	0	.	80
KIAA1239	57495	broad.mit.edu;bcgsc.ca	37	4	37440708	37440708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001144990	exon6	c.C992A	p.S331Y	.	.	96	7	56	0	.	.
KIAA1279	26128	bcgsc.ca	37	10	70775646	70775646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA1279	NM_015634	exon7	c.A1340G	p.H447R	.	.	65	5	74	0	.	91
KIAA1462	57608	bcgsc.ca	37	10	30336737	30336737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA1462	NM_020848	exon2	c.A5G	p.Y2C	.	.	48	4	63	0	.	72
KIAA1522	57648	bcgsc.ca	37	1	33237679	33237679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA1522	NM_020888	exon6	c.G2899T	p.A967S	.	.	73	5	62	0	.	90
KIF1B	23095	bcgsc.ca	37	1	10338159	10338159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIF1B	NM_183416	exon12	c.G1135T	p.A379S	.	.	76	4	92	0	.	93
KLHL7	55975	bcgsc.ca	37	7	23165419	23165419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KLHL7	NM_001172428	exon5	c.G482A	p.G161D	.	.	118	5	146	0	.	90
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53071186	53071186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KRT1	NM_006121	exon5	c.G1042T	p.D348Y	.	.	57	26	64	0	.	92
KRT76	51350	bcgsc.ca	37	12	53165996	53165996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KRT76	NM_015848	exon5	c.T1019C	p.L340P	.	.	61	4	102	0	.	154
KRTAP16-1	100505753	bcgsc.ca	37	17	39464221	39464221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001146182	exon1	c.T1285C	p.C429R	.	.	89	6	104	0	.	.
KTN1	3895	bcgsc.ca	37	14	56085979	56085979	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KTN1	NM_004986	exon5	c.T912C	p.V304V	.	.	95	5	103	0	.	1147
LAMA4	3910	ucsc.edu;bcgsc.ca	37	6	112513042	112513042	+	Missense_Mutation	SNP	C	C	A	rs147695488	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LAMA4	NM_001105206	exon6	c.G514T	p.G172C	.	.	44	4	41	0	C|0.999;T|0.001	140
LARP4B	23185	bcgsc.ca	37	10	888918	888918	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LARP4B	NM_015155	exon7	c.C600A	p.I200I	.	.	71	4	118	0	.	92
LARS2	23395	ucsc.edu	37	3	45533135	45533135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LARS2	NM_015340	exon13	c.G1366A	p.G456S	.	.	45	4	46	0	.	92
LDHB	3945	bcgsc.ca	37	12	21807559	21807559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LDHB	NM_002300	exon2	c.A47G	p.E16G	.	.	109	6	122	0	.	290
LEPRE1	64175	bcgsc.ca	37	1	43228083	43228083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LEPRE1	NM_001146289	exon2	c.A529G	p.M177V	.	.	73	4	90	0	.	94
LGALS2	3957	bcgsc.ca	37	22	37966414	37966414	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LGALS2	NM_006498	exon4	c.A255G	p.T85T	.	.	65	4	57	0	.	154
LINC00661	126536	broad.mit.edu;ucsc.edu	37	19	16131404	16131404	+	RNA	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	29	15	58	0	.	.
LINGO1	84894	bcgsc.ca	37	15	77907856	77907856	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LINGO1	NM_032808	exon2	c.G393T	p.L131L	.	.	65	4	60	0	.	24
LIPA	3988	ucsc.edu;bcgsc.ca	37	10	91007405	91007405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LIPA	NM_000235	exon2	c.A1G	p.M1V	.	.	37	4	51	0	.	90
LMF2	91289	bcgsc.ca	37	22	50942790	50942790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LMF2	NM_033200	exon12	c.T1697C	p.F566S	.	.	33	4	44	0	.	153
LMTK2	22853	bcgsc.ca	37	7	97821314	97821314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LMTK2	NM_014916	exon11	c.T1537C	p.S513P	.	.	69	5	47	0	.	1381
LOC100132707	0	ucsc.edu	37	7	154739743	154739743	+	RNA	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	31	4	21	0	.	.
LOC146880	0	bcgsc.ca	37	17	62750229	62750229	+	RNA	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	65	4	95	0	.	.
LOC728613	0	bcgsc.ca	37	5	1615333	1615333	+	RNA	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	45	4	36	0	.	.
LOC729020	0	bcgsc.ca	37	10	105005842	105005842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001143909	exon1	c.G89T	p.G30V	.	.	97	5	138	1	.	.
LPO	4025	ucsc.edu;bcgsc.ca	37	17	56329584	56329584	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LPO	NM_006151	exon8	c.C822T	p.C274C	.	.	46	4	50	0	.	91
LRP1B	53353	bcgsc.ca	37	2	141665644	141665644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LRP1B	NM_018557	exon22	c.A3322G	p.R1108G	.	.	121	6	91	0	.	311
LRRC16B	90668	ucsc.edu	37	14	24523939	24523939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LRRC16B	NM_138360	exon6	c.A382G	p.N128D	.	.	25	4	30	0	.	139
LRRC37A6P	387646	bcgsc.ca	37	10	27537101	27537101	+	RNA	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	67	4	83	0	.	.
LRRFIP1	9208	bcgsc.ca	37	2	238672462	238672462	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LRRFIP1	NM_001137552	exon11	c.A2106G	p.K702K	.	.	75	6	72	0	.	153
LTBP2	4053	bcgsc.ca	37	14	74971555	74971555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LTBP2	NM_000428	exon30	c.G4379A	p.S1460N	.	.	43	4	61	0	.	92
LUM	4060	bcgsc.ca	37	12	91502450	91502450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LUM	NM_002345	exon2	c.G307A	p.E103K	.	.	77	4	78	0	.	514
MACF1	23499	ucsc.edu;bcgsc.ca	37	1	39818706	39818706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MACF1	NM_012090	exon40	c.A5041G	p.N1681D	.	.	46	4	47	0	.	165
MAGEB16	139604	bcgsc.ca	37	X	35820618	35820618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAGEB16	NM_001099921	exon2	c.C305T	p.T102I	.	.	58	4	48	0	.	66
MAGI1	9223	bcgsc.ca	37	3	65415449	65415449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAGI1	NM_001033057	exon12	c.A1913G	p.Q638R	.	.	138	6	124	1	.	661
MALSU1	115416	bcgsc.ca	37	7	23340563	23340563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_138446	exon2	c.C362T	p.T121I	.	.	107	5	134	0	.	.
MAP3K5	4217	bcgsc.ca	37	6	137018402	137018402	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAP3K5	NM_005923	exon5	c.A930G	p.T310T	.	.	60	4	70	0	.	982
MAPKAPK2	9261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	206902164	206902166	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAPKAPK2	NM_004759	exon2	c.389_391del	p.130_131del	.	.	62	15	74	0	.	1214
MAPRE2	10982	bcgsc.ca	37	18	32681924	32681924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAPRE2	NM_014268	exon4	c.G411T	p.E137D	.	.	140	5	158	0	.	227
MAT2B	27430	bcgsc.ca	37	5	162940671	162940671	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAT2B	NM_013283	exon3	c.A369G	p.E123E	.	.	95	6	94	0	.	91
MBTPS1	8720	bcgsc.ca	37	16	84102021	84102021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MBTPS1	NM_003791	exon15	c.A1994T	p.Y665F	.	.	70	4	65	0	.	92
MC2R	4158	bcgsc.ca	37	18	13884808	13884808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MC2R	NM_000529	exon2	c.T710C	p.L237P	.	.	52	4	58	0	.	95
MDH1B	130752	bcgsc.ca	37	2	207610394	207610394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MDH1B	NM_001039845	exon9	c.A1360G	p.K454E	.	.	65	5	77	0	.	94
MED12	9968	ucsc.edu;bcgsc.ca	37	X	70349266	70349266	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MED12	NM_005120	exon26	c.T3678C	p.A1226A	.	.	47	4	75	0	.	272
MFSD2A	84879	bcgsc.ca	37	1	40430958	40430958	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MFSD2A	NM_001136493	exon4	c.G468A	p.Q156Q	.	.	75	4	76	0	.	92
MFSD7	84179	bcgsc.ca	37	4	680004	680004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MFSD7	NM_032219	exon3	c.T382C	p.F128L	.	.	69	4	104	1	.	90
MFSD9	84804	bcgsc.ca	37	2	103343393	103343393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MFSD9	NM_032718	exon4	c.T338C	p.L113P	.	.	158	6	160	0	.	155
MGAT4A	11320	bcgsc.ca	37	2	99291552	99291552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MGAT4A	NM_012214	exon4	c.A349G	p.K117E	.	.	86	4	71	0	.	91
MIER1	57708	bcgsc.ca	37	1	67391826	67391826	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MIER1	NM_001077700	exon2	c.T69C	p.Y23Y	.	.	129	6	141	0	.	91
MINA	84864	bcgsc.ca	37	3	97666233	97666233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MINA	NM_001042533	exon8	c.T1121C	p.L374P	.	.	51	4	49	0	.	91
MIR620	693205	hgsc.bcm.edu	37	12	116586417	116586420	+	RNA	DEL	TATA	TATA	-	rs113328518		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	TATA	TATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	76	0	65	0	TATA|0.500;-|0.500	.
MIR620	693205	ucsc.edu	37	12	116586413	116586413	+	RNA	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	85	56	76	0	.	.
MKLN1	4289	bcgsc.ca	37	7	131096093	131096093	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MKLN1	NM_013255	exon7	c.A732G	p.Q244Q	.	.	211	7	183	1	.	135
MLL3	58508	bcgsc.ca	37	7	151921543	151921543	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MLL3	NM_170606	exon19	c.C3135A	p.P1045P	.	.	223	6	179	2	.	1398
MLL	4297	bcgsc.ca	37	11	118367044	118367044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MLL	NM_001197104	exon20	c.T5626C	p.C1876R	.	.	67	4	83	0	.	1255
MLL4	8085	bcgsc.ca	37	19	36212537	36212537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MLL4	NM_014727	exon3	c.C2288A	p.P763Q	.	.	33	4	31	0	.	697
MLXIP	22877	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122614579	122614579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MLXIP	NM_014938	exon6	c.T830C	p.L277P	.	.	66	31	62	1	.	92
MME	4311	bcgsc.ca	37	3	154860083	154860083	+	Missense_Mutation	SNP	C	C	A	rs201534959	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MME	NM_007287	exon12	c.C1152A	p.S384R	.	.	60	4	90	1	.	516
MMRN1	22915	bcgsc.ca	37	4	90856609	90856609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MMRN1	NM_007351	exon6	c.A1778G	p.E593G	.	.	80	4	69	0	.	94
MOB2	81532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1491556	1491556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001172223	exon5	c.G653A	p.R218Q	.	.	61	24	86	0	.	.
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24705683	24705683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MPP6	NM_016447	exon9	c.G927C	p.M309I	.	.	87	40	76	0	.	90
MRGPRF	116535	ucsc.edu;bcgsc.ca	37	11	68773098	68773098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MRGPRF	NM_001098515	exon3	c.G680A	p.R227Q	.	.	60	5	61	0	.	90
MROH5	389690	bcgsc.ca	37	8	142451264	142451264	+	RNA	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	57	4	73	0	.	.
MROH7	374977	bcgsc.ca	37	1	55119581	55119581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001039464	exon3	c.A982G	p.T328A	.	.	95	6	81	0	.	.
MROH8	140699	bcgsc.ca	37	20	35772186	35772186	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	107	5	110	0	.	.
MRPL21	219927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	68664055	68664055	+	Silent	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MRPL21	NM_181514	exon4	c.G324C	p.V108V	.	.	69	30	77	0	.	90
MTMR1	8776	ucsc.edu;bcgsc.ca	37	X	149905905	149905905	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MTMR1	NM_003828	exon11	c.A1434G	p.G478G	.	.	39	4	64	0	.	131
MTMR4	9110	bcgsc.ca	37	17	56590247	56590247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MTMR4	NM_004687	exon3	c.C59A	p.P20H	.	.	76	4	84	0	.	91
MTMR6	9107	bcgsc.ca	37	13	25839991	25839991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MTMR6	NM_004685	exon5	c.T557C	p.F186S	.	.	48	4	53	0	.	94
MUC16	94025	bcgsc.ca	37	19	9056983	9056983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MUC16	NM_024690	exon3	c.A30463T	p.T10155S	.	.	85	5	117	0	.	566
MUC4	4585	broad.mit.edu	37	3	195506746	195506746	+	Missense_Mutation	SNP	G	G	A	rs192522651		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MUC4	NM_018406	exon2	c.C11705T	p.A3902V	.	.	5	2	12	0	G|0.950;A|0.050	90
MX2	4600	bcgsc.ca	37	21	42749764	42749764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MX2	NM_002463	exon3	c.T298C	p.C100R	.	.	56	4	84	0	.	92
MX2	4600	bcgsc.ca	37	21	42749789	42749789	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MX2	NM_002463	exon3	c.G323C	p.R108P	.	.	53	4	58	0	.	92
MYEF2	50804	bcgsc.ca	37	15	48451104	48451104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MYEF2	NM_016132	exon7	c.G733T	p.G245C	.	.	111	6	111	1	.	523
MYH2	4620	bcgsc.ca	37	17	10426471	10426471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MYH2	NM_017534	exon39	c.T5609C	p.L1870P	.	.	165	5	203	1	.	194
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16701447	16701447	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MYO10	NM_012334	exon25	c.A3057G	p.R1019R	.	.	61	28	57	0	.	3
NAA35	60560	ucsc.edu;bcgsc.ca	37	9	88622288	88622288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NAA35	NM_024635	exon14	c.G1132A	p.D378N	.	.	41	4	60	0	.	92
NCAPD3	23310	bcgsc.ca	37	11	134022868	134022868	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NCAPD3	NM_015261	exon35	c.C4468A	p.R1490R	.	.	63	4	105	0	.	229
NCBP1	4686	bcgsc.ca	37	9	100410458	100410458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NCBP1	NM_002486	exon8	c.A850G	p.M284V	.	.	76	4	77	0	.	90
NCKAP1	10787	bcgsc.ca	37	2	183793556	183793556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NCKAP1	NM_205842	exon29	c.A3043G	p.T1015A	.	.	237	7	231	0	.	92
NCOA2	10499	bcgsc.ca	37	8	71060544	71060544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NCOA2	NM_006540	exon12	c.G2569A	p.G857R	.	.	61	4	78	0	.	639
NCOA4	8031	bcgsc.ca	37	10	51585147	51585147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NCOA4	NM_001145261	exon9	c.T1294C	p.C432R	.	.	96	5	111	1	.	1042
NCOR1	9611	bcgsc.ca	37	17	15965529	15965529	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NCOR1	NM_001190440	exon35	c.T5325C	p.P1775P	.	.	63	4	54	0	.	229
NCOR1	9611	bcgsc.ca	37	17	16055285	16055285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NCOR1	NM_001190440	exon7	c.A817G	p.K273E	.	.	100	5	92	0	.	229
ND3	0	bcgsc.ca	37	MT	10390	10390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	ENST00000361227	exon1	c.T332C	p.L111S	.	.	401	53	147	0	.	.
NDEL1	81565	bcgsc.ca	37	17	8363347	8363347	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NDEL1	NM_001025579	exon8	c.A813G	p.A271A	.	.	59	4	79	0	.	90
NDRG2	57447	bcgsc.ca	37	14	21486623	21486623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NDRG2	NM_201537	exon13	c.T854C	p.F285S	.	.	63	5	90	0	.	154
NDRG2	57447	bcgsc.ca	37	14	21487889	21487889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NDRG2	NM_201537	exon10	c.G625A	p.G209R	.	.	123	5	138	0	.	154
NEBL	10529	bcgsc.ca	37	10	21076133	21076133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NEBL	NM_006393	exon27	c.C2866A	p.L956I	.	.	119	5	158	0	.	92
NEDD4	4734	bcgsc.ca	37	15	56208699	56208699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NEDD4	NM_198400	exon1	c.G331T	p.D111Y	.	.	84	4	76	0	.	723
NEGR1	257194	bcgsc.ca	37	1	72400857	72400857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NEGR1	NM_173808	exon2	c.T314C	p.I105T	.	.	61	4	107	0	.	92
NEIL2	252969	bcgsc.ca	37	8	11643531	11643531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NEIL2	NM_001135746	exon5	c.T748C	p.S250P	.	.	54	4	83	0	.	659
NEK10	152110	bcgsc.ca	37	3	27332230	27332230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NEK10	NM_199347	exon20	c.G1621T	p.G541C	.	.	87	5	75	0	.	695
NEK4	6787	bcgsc.ca	37	3	52802544	52802544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NEK4	NM_003157	exon2	c.T170C	p.L57S	.	.	61	4	76	0	.	358
NEO1	4756	bcgsc.ca	37	15	73536719	73536719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NEO1	NM_001172623	exon9	c.A1486G	p.M496V	.	.	40	4	50	0	.	116
NFE2L1	4779	ucsc.edu;bcgsc.ca	37	17	46135846	46135846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NFE2L1	NM_003204	exon6	c.G1162T	p.A388S	.	.	44	4	39	0	.	91
NIPAL1	152519	bcgsc.ca	37	4	48027183	48027183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NIPAL1	NM_207330	exon2	c.C145A	p.L49M	.	.	87	4	105	0	.	68
NIPSNAP3A	25934	bcgsc.ca	37	9	107521579	107521579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NIPSNAP3A	NM_015469	exon6	c.A704G	p.N235S	.	.	117	5	151	0	.	90
NKAIN4	128414	bcgsc.ca	37	20	61878955	61878955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NKAIN4	NM_152864	exon4	c.A446G	p.H149R	.	.	105	5	106	0	.	68
NLRX1	79671	broad.mit.edu;bcgsc.ca	37	11	119050855	119050855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NLRX1	NM_024618	exon7	c.A2125G	p.T709A	.	.	73	6	59	0	.	92
NME5	8382	bcgsc.ca	37	5	137474341	137474341	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NME5	NM_003551	exon2	c.G129A	p.Q43Q	.	.	63	4	72	0	.	115
NOC2L	26155	bcgsc.ca	37	1	880913	880913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOC2L	NM_015658	exon17	c.G2038A	p.G680R	.	.	81	4	110	0	.	92
NOL6	65083	ucsc.edu;bcgsc.ca	37	9	33468068	33468068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOL6	NM_022917	exon11	c.A1384G	p.T462A	.	.	45	6	55	0	.	92
NOL9	79707	bcgsc.ca	37	1	6604898	6604898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOL9	NM_024654	exon5	c.A965G	p.H322R	.	.	81	4	81	0	.	515
NOTCH1	4851	ucsc.edu	37	9	139391101	139391101	+	Missense_Mutation	SNP	T	T	C	rs201045092		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOTCH1	NM_017617	exon34	c.A7090G	p.S2364G	.	.	44	4	30	0	.	5459
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917704	26917704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOVA1	NM_002515	exon5	c.C985A	p.L329I	.	.	20	11	26	0	.	229
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89069054	89069054	+	Silent	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOX4	NM_016931	exon17	c.G1575C	p.R525R	.	.	417	181	455	0	.	515
NPAT	4863	bcgsc.ca	37	11	108043254	108043254	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NPAT	NM_002519	exon13	c.T2457C	p.S819S	.	.	97	6	111	0	.	117
NR6A1	2649	ucsc.edu;bcgsc.ca	37	9	127300557	127300557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NR6A1	NM_033334	exon6	c.A638G	p.Q213R	.	.	46	4	55	0	.	189
NRK	203447	bcgsc.ca	37	X	105124205	105124205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NRK	NM_198465	exon3	c.A137G	p.K46R	.	.	68	4	66	0	.	630
NRXN2	9379	ucsc.edu;bcgsc.ca	37	11	64434897	64434897	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NRXN2	NM_015080	exon9	c.A1623G	p.G541G	.	.	49	5	49	1	.	232
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562164	176562164	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NSD1	NM_022455	exon2	c.G60A	p.V20V	.	.	56	18	63	0	.	188
NSUN2	54888	broad.mit.edu	37	5	6623327	6623327	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NSUN2	NM_017755	exon5	c.G537A	p.K179K	.	.	46	7	96	2	.	91
NUDC	10726	bcgsc.ca	37	1	27268257	27268257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NUDC	NM_006600	exon4	c.A377G	p.E126G	.	.	112	5	131	0	.	91
NWD1	284434	ucsc.edu;bcgsc.ca	37	19	16874716	16874716	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NWD1	NM_001007525	exon9	c.T2211C	p.L737L	.	.	35	4	37	0	.	7
NXF1	10482	bcgsc.ca	37	11	62561852	62561852	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NXF1	NM_006362	exon19	c.A1638G	p.R546R	.	.	65	4	59	0	.	228
OAS3	4940	bcgsc.ca	37	12	113382379	113382379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OAS3	NM_006187	exon3	c.C559A	p.L187M	.	.	31	4	38	0	.	1
OBFC1	79991	bcgsc.ca	37	10	105652012	105652012	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OBFC1	NM_024928	exon9	c.754-2A>G	.	.	.	50	4	45	0	.	69
OBSCN	84033	bcgsc.ca	37	1	228557668	228557668	+	Missense_Mutation	SNP	G	G	T	rs199654965	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OBSCN	NM_001271223	exon102	c.G22864T	p.G7622C	.	.	47	4	51	0	.	403
ODF2	4957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131256871	131256871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ODF2	NM_153435	exon17	c.A2027C	p.E676A	.	.	38	14	52	0	.	69
OGFOD1	55239	bcgsc.ca	37	16	56496530	56496530	+	Silent	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OGFOD1	NM_018233	exon4	c.T432A	p.A144A	.	.	28	4	38	0	.	69
OLA1	29789	bcgsc.ca	37	2	174943694	174943694	+	Splice_Site	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OLA1	NM_013341	exon11	c.1089+2T>A	.	.	.	163	5	166	2	.	132
OPN4	94233	bcgsc.ca	37	10	88416007	88416007	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OPN4	NM_033282	exon2	c.G240T	p.V80V	.	.	136	5	151	0	.	69
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576688	158576688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR10Z1	NM_001004478	exon1	c.C460T	p.L154F	.	.	171	44	135	0	.	70
OR1J1	347168	bcgsc.ca	37	9	125239654	125239654	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR1J1	NM_001004451	exon1	c.G552A	p.L184L	.	.	86	4	101	0	.	70
OR1L3	26735	bcgsc.ca	37	9	125438078	125438078	+	Missense_Mutation	SNP	G	G	T	rs200264223	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR1L3	NM_001005234	exon1	c.G670T	p.A224S	.	.	95	6	110	0	G|0.999;A|0.001	69
OR1L8	138881	bcgsc.ca	37	9	125330294	125330294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR1L8	NM_001004454	exon1	c.C463A	p.L155I	.	.	83	4	94	1	.	70
OR2T2	401992	broad.mit.edu;bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	rs199823862		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	TGCTGCG	TGCTGCG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR2T2	NM_001004136	exon1	c.607_613del	p.203_205del	.	.	337	11	270	0	.	23
OR2T27	403239	broad.mit.edu;mdanderson.org	37	1	248814007	248814007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR2T27	NM_001001824	exon1	c.A179T	p.Y60F	.	.	212	25	181	0	.	47
OR5B2	390190	bcgsc.ca	37	11	58190571	58190571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR5B2	NM_001005566	exon1	c.C164T	p.T55I	.	.	59	5	77	0	.	71
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158670099	158670099	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR6K2	NM_001005279	exon1	c.C344G	p.T115R	.	.	103	56	90	0	.	69
OR7D2	162998	bcgsc.ca	37	19	9297137	9297137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR7D2	NM_175883	exon1	c.A680G	p.K227R	.	.	74	4	77	0	.	71
OR8H1	219469	bcgsc.ca	37	11	56057849	56057849	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR8H1	NM_001005199	exon1	c.T690C	p.T230T	.	.	128	6	109	0	.	71
OTOP2	92736	bcgsc.ca	37	17	72923773	72923773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OTOP2	NM_178160	exon5	c.T523C	p.F175L	.	.	38	5	50	0	.	134
PADI4	23569	ucsc.edu;bcgsc.ca	37	1	17674442	17674442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PADI4	NM_012387	exon10	c.A1054G	p.M352V	.	.	31	4	29	0	.	70
PAICS	10606	bcgsc.ca	37	4	57325635	57325635	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PAICS	NM_001079525	exon10	c.A1230G	p.R410R	.	.	179	5	197	0	.	68
PAK1IP1	55003	bcgsc.ca	37	6	10704773	10704773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PAK1IP1	NM_017906	exon6	c.A530G	p.E177G	.	.	75	4	78	0	.	68
PAK1IP1	55003	bcgsc.ca	37	6	10707714	10707714	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PAK1IP1	NM_017906	exon8	c.T807C	p.G269G	.	.	112	7	128	0	.	68
PAPSS1	9061	ucsc.edu	37	4	108566015	108566015	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PAPSS1	NM_005443	exon10	c.T1449C	p.P483P	.	.	34	4	32	0	.	94
PAQR4	124222	bcgsc.ca	37	16	3021270	3021270	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PAQR4	NM_152341	exon2	c.T279C	p.P93P	.	.	37	4	44	0	.	68
PARP6	56965	bcgsc.ca;mdanderson.org	37	15	72541589	72541589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PARP6	NM_020214	exon19	c.T1558C	p.S520P	.	.	26	5	29	0	.	522
PATL1	219988	ucsc.edu;bcgsc.ca	37	11	59423998	59423998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PATL1	NM_152716	exon6	c.T697C	p.S233P	.	.	45	4	54	0	.	1
PC	5091	bcgsc.ca	37	11	66616537	66616537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PC	NM_000920	exon22	c.A3370G	p.K1124E	.	.	40	4	64	0	.	228
PCDH19	57526	ucsc.edu	37	X	99551551	99551551	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDH19	NM_001184880	exon6	c.T3171C	p.N1057N	.	.	29	4	20	0	.	110
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30726038	30726038	+	Silent	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDH7	NM_032457	exon1	c.T2994A	p.S998S	.	.	64	22	42	0	.	229
PCDHAC2	56134	ucsc.edu;bcgsc.ca	37	5	140389242	140389242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDHAC2	NM_018899	exon4	c.T2744C	p.V915A	.	.	51	4	55	0	.	26
PCDHB1	29930	bcgsc.ca	37	5	140432800	140432800	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDHB1	NM_013340	exon1	c.A1745T	p.E582V	.	.	78	4	86	0	.	90
PCDP1	0	bcgsc.ca	37	2	120383176	120383176	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001271049	exon15	c.A1428G	p.R476R	.	.	57	4	64	0	.	.
PCNT	5116	bcgsc.ca	37	21	47864704	47864704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCNT	NM_006031	exon46	c.A9937G	p.I3313V	.	.	52	4	52	0	.	141
PDE4A	5141	bcgsc.ca	37	19	10577809	10577809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDE4A	NM_001111307	exon15	c.C2173A	p.Q725K	.	.	40	4	41	0	.	523
PDHX	8050	bcgsc.ca	37	11	34969131	34969131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDHX	NM_003477	exon3	c.A320G	p.D107G	.	.	81	4	102	0	.	226
PDLIM7	9260	ucsc.edu;bcgsc.ca	37	5	176916491	176916491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDLIM7	NM_005451	exon9	c.C772T	p.R258C	.	.	43	4	39	0	.	153
PDP2	57546	ucsc.edu;bcgsc.ca	37	16	66918397	66918397	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDP2	NM_020786	exon2	c.A210G	p.E70E	.	.	48	4	45	0	.	91
PDZD4	57595	ucsc.edu	37	X	153074040	153074040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDZD4	NM_032512	exon2	c.A71G	p.K24R	.	.	34	4	56	0	.	193
PEX3	8504	bcgsc.ca	37	6	143810345	143810345	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PEX3	NM_003630	exon12	c.T1104C	p.P368P	.	.	81	4	115	0	.	91
PFKFB2	5208	bcgsc.ca	37	1	207240845	207240845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PFKFB2	NM_001018053	exon9	c.G634A	p.D212N	.	.	79	4	53	0	.	91
PGR	5241	bcgsc.ca	37	11	100962595	100962595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PGR	NM_000926	exon3	c.A1802T	p.Y601F	.	.	54	4	63	0	.	652
PHKA2	5256	bcgsc.ca	37	X	18943873	18943873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PHKA2	NM_000292	exon15	c.G1482T	p.L494F	.	.	45	4	56	0	.	131
PHKB	5257	bcgsc.ca	37	16	47621648	47621648	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PHKB	NM_000293	exon9	c.C844T	p.L282L	.	.	62	4	80	0	.	154
PHRF1	57661	ucsc.edu;bcgsc.ca	37	11	609443	609443	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PHRF1	NM_020901	exon14	c.A3984G	p.E1328E	.	.	22	4	25	0	.	22
PIAS1	8554	bcgsc.ca	37	15	68445978	68445978	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PIAS1	NM_016166	exon7	c.T879C	p.L293L	.	.	64	5	72	0	.	637
PIGM	93183	bcgsc.ca	37	1	160000521	160000521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PIGM	NM_145167	exon1	c.C1009A	p.L337I	.	.	71	4	47	0	.	228
PIKFYVE	200576	bcgsc.ca	37	2	209153485	209153485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PIKFYVE	NM_015040	exon7	c.T854C	p.L285P	.	.	127	5	158	0	.	583
PLCE1	51196	ucsc.edu	37	10	95849120	95849120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLCE1	NM_001165979	exon1	c.T269C	p.L90P	.	.	44	4	64	0	.	229
PLCG2	5336	bcgsc.ca	37	16	81942163	81942163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLCG2	NM_002661	exon17	c.A1700G	p.E567G	.	.	59	4	65	0	.	892
PLCH1	23007	bcgsc.ca	37	3	155286030	155286030	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLCH1	NM_001130960	exon6	c.T819C	p.L273L	.	.	145	5	248	0	.	151
PLEKHA1	59338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124166157	124166157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHA1	NM_001195608	exon6	c.G310T	p.V104L	.	.	139	62	149	0	.	226
PLEKHA5	54477	bcgsc.ca	37	12	19500033	19500033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHA5	NM_001256470	exon24	c.T2815C	p.C939R	.	.	81	4	94	0	.	227
PLEKHF1	79156	ucsc.edu;bcgsc.ca	37	19	30164931	30164931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHF1	NM_024310	exon2	c.T185C	p.L62P	.	.	26	4	35	0	.	226
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151161944	151161944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHG1	NM_001029884	exon17	c.T4070G	p.L1357R	.	.	65	26	94	0	.	92
PLXNB3	5365	ucsc.edu;bcgsc.ca	37	X	153039372	153039372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLXNB3	NM_001163257	exon21	c.T3407A	p.V1136E	.	.	15	4	28	0	.	130
PMCHL2	5370	broad.mit.edu;ucsc.edu	37	5	70671812	70671812	+	RNA	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	47	17	60	0	.	.
PMS2	5395	bcgsc.ca	37	7	6029503	6029503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PMS2	NM_000535	exon10	c.T1072C	p.S358P	.	.	73	6	121	1	.	1083
PNLDC1	154197	bcgsc.ca	37	6	160227016	160227016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PNLDC1	NM_173516	exon7	c.T430C	p.S144P	.	.	55	4	59	0	.	90
PNMA3	29944	bcgsc.ca	37	X	152226167	152226167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PNMA3	NM_013364	exon2	c.A755G	p.K252R	.	.	78	4	94	0	.	600
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108131857	108131857	+	Silent	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PNPLA8	NM_001256008	exon7	c.T1680A	p.P560P	.	.	147	56	115	0	.	135
POF1B	79983	bcgsc.ca	37	X	84558492	84558492	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	POF1B	NM_024921	exon15	c.A1569G	p.E523E	.	.	125	6	141	0	.	130
POLH	5429	bcgsc.ca	37	6	43565521	43565521	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	POLH	NM_006502	exon5	c.A579G	p.G193G	.	.	94	5	122	3	.	290
POLR1A	25885	bcgsc.ca	37	2	86258688	86258688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	POLR1A	NM_015425	exon30	c.A4343G	p.E1448G	.	.	92	6	128	0	.	93
POLR2B	5431	bcgsc.ca	37	4	57852572	57852572	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	POLR2B	NM_000938	exon2	c.A72G	p.E24E	.	.	53	4	62	0	.	92
POLR2B	5431	bcgsc.ca	37	4	57860651	57860651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	POLR2B	NM_000938	exon4	c.A325G	p.M109V	.	.	75	4	99	1	.	92
PON2	5445	bcgsc.ca	37	7	95041002	95041002	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PON2	NM_000305	exon5	c.T457C	p.L153L	.	.	208	6	203	0	.	90
POTEA	340441	bcgsc.ca	37	8	43147764	43147764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	POTEA	NM_001005365	exon1	c.G137T	p.W46L	.	.	67	4	113	0	.	91
PPAT	5471	bcgsc.ca	37	4	57267046	57267046	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPAT	NM_002703	exon8	c.T918C	p.C306C	.	.	92	5	121	0	.	90
PPIL6	285755	bcgsc.ca	37	6	109721302	109721302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPIL6	NM_001111298	exon8	c.G838A	p.G280R	.	.	148	5	214	0	.	90
PPIP5K2	23262	ucsc.edu	37	5	102503843	102503843	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPIP5K2	NM_015216	exon18	c.C2130T	p.D710D	.	.	193	1	239	0	.	92
PPP1R10	5514	bcgsc.ca	37	6	30571557	30571557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPP1R10	NM_002714	exon15	c.G1572T	p.E524D	.	.	67	4	77	0	.	660
PPP2R2C	5522	bcgsc.ca	37	4	6349700	6349700	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPP2R2C	NM_181876	exon6	c.T663C	p.L221L	.	.	59	4	85	0	.	1084
PPP2R5E	5529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	63858560	63858560	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPP2R5E	NM_006246	exon10	c.G929A	p.W310X	.	.	88	34	122	0	.	658
PRDM11	56981	bcgsc.ca	37	11	45246290	45246290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PRDM11	NM_001256695	exon7	c.G1265T	p.R422L	.	.	109	6	96	0	.	91
PRDM15	63977	bcgsc.ca	37	21	43279762	43279762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PRDM15	NM_022115	exon9	c.G970A	p.E324K	.	.	33	4	33	0	.	90
PRDM15	63977	ucsc.edu;bcgsc.ca	37	21	43291640	43291640	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PRDM15	NM_022115	exon4	c.G504A	p.A168A	.	.	42	4	31	0	.	90
PRMT3	10196	bcgsc.ca	37	11	20486085	20486085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PRMT3	NM_005788	exon13	c.T1340C	p.M447T	.	.	59	4	86	0	.	90
PRRC2C	23215	bcgsc.ca	37	1	171535393	171535393	+	Missense_Mutation	SNP	A	A	G	rs111726709		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_015172	exon21	c.A6133G	p.S2045G	.	.	211	6	172	0	A|0.500;G|0.500	.
PRRG4	79056	bcgsc.ca	37	11	32874859	32874859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PRRG4	NM_024081	exon6	c.A467G	p.E156G	.	.	80	4	67	0	.	90
PSAP	5660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73610968	73610968	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PSAP	NM_002778	exon1	c.T11A	p.L4H	.	.	56	32	54	0	.	91
PSENEN	55851	bcgsc.ca	37	19	36237659	36237659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PSENEN	NM_172341	exon4	c.T217C	p.S73P	.	.	58	4	61	0	.	228
PSG10P	653492	ucsc.edu	37	19	43341449	43341449	+	RNA	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	154	66	196	0	.	.
PSMC3	5702	ucsc.edu	37	11	47447822	47447822	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PSMC3	NM_002804	exon1	c.G9T	p.L3L	.	.	29	4	56	0	.	94
PSMD1	5707	bcgsc.ca	37	2	231941836	231941836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PSMD1	NM_002807	exon9	c.G1031T	p.R344L	.	.	158	6	184	0	.	92
PTGFR	5737	bcgsc.ca	37	1	79002129	79002129	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PTGFR	NM_000959	exon3	c.T837C	p.S279S	.	.	81	5	69	0	.	527
PTPN7	5778	ucsc.edu	37	1	202124709	202124709	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PTPN7	NM_002832	exon5	c.G735T	p.R245R	.	.	42	4	51	0	.	227
PTPRK	5796	bcgsc.ca	37	6	128330385	128330385	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PTPRK	NM_001135648	exon14	c.C2223T	p.I741I	.	.	68	4	77	0	.	231
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80933705	80933705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001145026	exon17	c.G2620A	p.V874I	.	.	62	26	80	0	.	.
PVRIG	79037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	99818613	99818613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PVRIG	NM_024070	exon6	c.C720A	p.C240X	.	.	102	30	100	0	.	24
QRICH2	84074	ucsc.edu	37	17	74288410	74288410	+	Missense_Mutation	SNP	C	C	T	rs80109605		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	QRICH2	NM_032134	exon4	c.G1900A	p.G634S	.	.	39	7	66	1	.	94
RAB3IP	117177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70149324	70149324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RAB3IP	NM_175623	exon2	c.T184G	p.S62A	.	.	106	37	84	0	.	227
RAD51AP1	10635	bcgsc.ca	37	12	4665646	4665646	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RAD51AP1	NM_001130862	exon9	c.G900A	p.K300K	.	.	65	4	71	0	.	227
RALA	5898	bcgsc.ca	37	7	39730071	39730071	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RALA	NM_005402	exon3	c.A205T	p.T69S	.	.	55	4	49	0	.	847
RALGAPB	57148	bcgsc.ca	37	20	37168585	37168585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RALGAPB	NM_020336	exon17	c.A2546G	p.D849G	.	.	62	4	56	0	.	92
RALGPS1	9649	ucsc.edu;bcgsc.ca	37	9	129975267	129975267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RALGPS1	NM_014636	exon17	c.G1491T	p.M497I	.	.	38	4	63	0	.	227
RAPGEF6	51735	ucsc.edu;bcgsc.ca	37	5	130788807	130788807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RAPGEF6	NM_001164387	exon22	c.T3155C	p.I1052T	.	.	44	4	77	0	.	661
RASGRP1	10125	bcgsc.ca	37	15	38794589	38794589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RASGRP1	NM_005739	exon12	c.G1462A	p.G488R	.	.	74	4	49	0	.	697
RBBP9	10741	bcgsc.ca	37	20	18470447	18470447	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RBBP9	NM_006606	exon5	c.G522A	p.L174L	.	.	86	4	87	0	.	227
RBFOX2	23543	bcgsc.ca	37	22	36157308	36157308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RBFOX2	NM_001082578	exon9	c.A905G	p.N302S	.	.	71	4	80	0	.	90
RBPMS	11030	ucsc.edu	37	8	30361898	30361898	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RBPMS	NM_006867	exon5	c.A342G	p.P114P	.	.	25	4	64	1	.	91
RECQL	5965	bcgsc.ca	37	12	21629855	21629855	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RECQL	NM_032941	exon9	c.A939G	p.K313K	.	.	88	4	107	0	.	228
RELN	5649	bcgsc.ca	37	7	103179742	103179742	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	RELN,NS,carcinoma,0	RELN	NM_173054	exon45	c.G6963T	p.T2321T	.	.	43	4	52	0	.	574
RFC1	5981	bcgsc.ca	37	4	39347082	39347082	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RFC1	NM_002913	exon3	c.T147C	p.R49R	.	.	133	6	160	0	.	230
RGS12	6002	ucsc.edu;bcgsc.ca	37	4	3432244	3432244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RGS12	NM_002926	exon17	c.T3676C	p.S1226P	.	.	36	4	60	0	.	226
RGS14	10636	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176798894	176798894	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RGS14	NM_006480	exon15	c.C1519A	p.R507R	.	.	19	7	35	0	.	226
RGS6	9628	bcgsc.ca	37	14	72925026	72925026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RGS6	NM_001204424	exon5	c.T283C	p.F95L	.	.	98	6	112	0	.	227
RICTOR	253260	bcgsc.ca	37	5	38960507	38960507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RICTOR	NM_152756	exon20	c.C1844A	p.S615Y	.	.	178	6	177	0	.	849
RIPK1	8737	bcgsc.ca	37	6	3085613	3085613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RIPK1	NM_003804	exon5	c.C809T	p.A270V	.	.	66	4	70	0	.	1044
RMDN2	151393	bcgsc.ca	37	2	38156570	38156570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001170792	exon2	c.T150A	p.N50K	.	.	79	4	81	0	.	.
RNF135	84282	ucsc.edu;bcgsc.ca	37	17	29326154	29326154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RNF135	NM_032322	exon5	c.G1244T	p.W415L	.	.	34	4	47	0	.	227
RNF168	165918	bcgsc.ca	37	3	196199242	196199242	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RNF168	NM_152617	exon6	c.A1164G	p.R388R	.	.	155	6	181	0	.	90
RNF168	165918	bcgsc.ca	37	3	196199316	196199316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RNF168	NM_152617	exon6	c.A1090G	p.T364A	.	.	142	7	124	0	.	90
RNF168	165918	bcgsc.ca	37	3	196214326	196214326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RNF168	NM_152617	exon3	c.A502G	p.M168V	.	.	487	11	542	2	.	90
RNU6-71	100873774	bcgsc.ca	37	6	56600025	56600025	+	RNA	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	66	4	90	0	.	.
ROBO3	64221	bcgsc.ca	37	11	124747504	124747504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ROBO3	NM_022370	exon20	c.G2936A	p.R979K	.	.	71	4	86	0	.	113
RPAIN	84268	bcgsc.ca	37	17	5329349	5329349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPAIN	NM_001160266	exon4	c.C372A	p.S124R	.	.	59	4	67	0	.	44
RPF2	84154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111318428	111318428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPF2	NM_032194	exon5	c.G277A	p.G93S	.	.	95	36	122	0	.	92
RPGRIP1L	23322	bcgsc.ca	37	16	53698792	53698792	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPGRIP1L	NM_001127897	exon10	c.A1233G	p.K411K	.	.	60	4	46	0	.	91
RPP30	10556	bcgsc.ca	37	10	92655651	92655651	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPP30	NM_006413	exon9	c.A594G	p.R198R	.	.	184	6	195	1	.	226
RPS6KA5	9252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91338575	91338575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPS6KA5	NM_004755	exon17	c.C2252G	p.T751S	.	.	224	108	215	0	.	979
RRP9	9136	bcgsc.ca	37	3	51969239	51969239	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RRP9	NM_004704	exon11	c.G1008A	p.E336E	.	.	76	4	103	0	.	154
RSPH10B	222967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	5967916	5967916	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RSPH10B	NM_173565	exon20	c.A2343G	p.E781E	.	.	465	135	667	0	.	23
RSPO2	340419	ucsc.edu;bcgsc.ca	37	8	109094801	109094801	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RSPO2	NM_178565	exon2	c.A66G	p.Q22Q	.	.	39	4	53	0	.	231
RSU1P2	100133308	bcgsc.ca	37	10	45632500	45632500	+	RNA	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	44	4	51	0	.	.
RTEL1-TNFRSF6B	100533107	ucsc.edu	37	20	62329993	62329993	+	RNA	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	34	4	25	0	.	.
RUFY2	55680	bcgsc.ca	37	10	70138399	70138399	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RUFY2	NM_001042417	exon12	c.A1132T	p.T378S	.	.	73	4	94	0	.	91
RUFY3	22902	bcgsc.ca	37	4	71634349	71634349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RUFY3	NM_001130709	exon5	c.T847C	p.C283R	.	.	92	5	155	0	.	90
RXFP2	122042	bcgsc.ca	37	13	32351582	32351582	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RXFP2	NM_001166058	exon8	c.C711T	p.F237F	.	.	91	5	97	0	.	90
RYR3	6263	bcgsc.ca	37	15	34065816	34065816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RYR3	NM_001243996	exon64	c.G9137T	p.R3046M	.	.	60	4	50	0	.	520
SALL2	6297	bcgsc.ca	37	14	21993646	21993646	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SALL2	NM_005407	exon2	c.C216A	p.P72P	.	.	149	6	152	1	.	92
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	76754127	76754127	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SALL3	NM_171999	exon2	c.C2136T	p.C712C	.	.	21	9	33	0	.	155
SAMD9L	219285	bcgsc.ca	37	7	92762295	92762295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SAMD9L	NM_152703	exon5	c.T2990A	p.L997Q	.	.	111	5	61	0	.	94
SARDH	1757	bcgsc.ca	37	9	136597663	136597663	+	Missense_Mutation	SNP	C	C	A	rs199762648	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SARDH	NM_007101	exon3	c.G392T	p.R131L	.	.	66	4	76	0	.	90
SBSN	374897	bcgsc.ca	37	19	36015617	36015617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SBSN	NM_001166034	exon3	c.G1745T	p.W582L	.	.	54	4	45	0	.	91
SCARF2	91179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20784723	20784723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SCARF2	NM_182895	exon6	c.G1195A	p.G399R	.	.	22	14	19	0	.	341
SCFD2	152579	bcgsc.ca	37	4	54140035	54140035	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SCFD2	NM_152540	exon4	c.C1269T	p.A423A	.	.	46	4	51	0	.	93
SCN7A	6332	bcgsc.ca	37	2	167313586	167313586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SCN7A	NM_002976	exon10	c.A1084G	p.I362V	.	.	74	4	52	0	.	67
SCN9A	6335	bcgsc.ca	37	2	167129141	167129141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SCN9A	NM_002977	exon17	c.A3086G	p.N1029S	.	.	109	4	120	0	.	181
SCUBE2	57758	bcgsc.ca	37	11	9047328	9047328	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SCUBE2	NM_020974	exon20	c.A2604G	p.S868S	.	.	136	5	133	0	.	92
SDR42E1	93517	bcgsc.ca	37	16	82032833	82032833	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SDR42E1	NM_145168	exon3	c.T1065C	p.H355H	.	.	84	4	114	0	.	90
SEC14L2	23541	bcgsc.ca	37	22	30818303	30818303	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SEC14L2	NM_012429	exon12	c.T1119C	p.H373H	.	.	72	4	88	0	.	90
SEC23IP	11196	bcgsc.ca	37	10	121675375	121675375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SEC23IP	NM_007190	exon8	c.G1518T	p.L506F	.	.	128	5	158	0	.	93
SECISBP2	79048	bcgsc.ca	37	9	91943603	91943603	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SECISBP2	NM_024077	exon5	c.A603G	p.K201K	.	.	136	5	161	0	.	93
SENP7	57337	bcgsc.ca	37	3	101046534	101046534	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SENP7	NM_020654	exon23	c.G2991A	p.L997L	.	.	149	5	128	0	.	661
SERPINA4	5267	bcgsc.ca	37	14	95033413	95033413	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SERPINA4	NM_006215	exon3	c.T756C	p.H252H	.	.	51	4	65	0	.	230
SERPINA5	5104	bcgsc.ca	37	14	95056419	95056419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SERPINA5	NM_000624	exon4	c.C661A	p.Q221K	.	.	59	6	76	0	.	652
SERPINB13	5275	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61255920	61255920	+	Missense_Mutation	SNP	G	G	A	rs139825462		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SERPINB13	NM_012397	exon2	c.G19A	p.V7I	.	.	128	68	156	1	G|1.000;A|0.000	227
SERPINI2	5276	bcgsc.ca	37	3	167183421	167183421	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SERPINI2	NM_001012303	exon5	c.T549C	p.P183P	.	.	87	5	109	1	.	228
SERTAD4	56256	bcgsc.ca	37	1	210414979	210414979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SERTAD4	NM_019605	exon4	c.A368G	p.E123G	.	.	111	5	69	0	.	92
SESN3	143686	bcgsc.ca	37	11	94918472	94918472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SESN3	NM_144665	exon5	c.T710C	p.L237P	.	.	91	4	66	0	.	90
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30977205	30977205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SETD1A	NM_014712	exon8	c.G2003T	p.R668L	.	.	113	48	113	0	.	93
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198267360	198267360	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SF3B1	NM_012433	exon14	c.A1997C	p.K666T	.	.	128	58	120	0	.	140
SH3BGRL	6451	ucsc.edu;bcgsc.ca	37	X	80457736	80457736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SH3BGRL	NM_003022	exon1	c.T37C	p.S13P	.	.	16	4	17	0	.	131
SHCBP1L	81626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182873386	182873386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SHCBP1L	NM_030933	exon8	c.G1516A	p.E506K	.	.	111	24	75	0	.	91
SHPRH	257218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146264776	146264776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SHPRH	NM_173082	exon9	c.G1741T	p.V581F	.	.	178	70	231	1	.	92
SIGLEC1	6614	ucsc.edu;bcgsc.ca	37	20	3682281	3682281	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SIGLEC1	NM_023068	exon6	c.T1236C	p.P412P	.	.	36	4	36	0	.	167
SIM1	6492	bcgsc.ca	37	6	100896364	100896364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SIM1	NM_005068	exon6	c.T734C	p.L245P	.	.	53	4	57	0	.	94
SIPA1L1	26037	bcgsc.ca	37	14	72055861	72055861	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SIPA1L1	NM_015556	exon2	c.A1272G	p.E424E	.	.	133	5	190	0	.	156
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54637586	54637586	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SKIV2L2	NM_015360	exon7	c.T768C	p.Y256Y	.	.	102	42	99	0	.	92
SLC11A1	6556	ucsc.edu	37	2	219251953	219251953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC11A1	NM_000578	exon6	c.G571A	p.G191R	.	.	48	4	46	0	.	93
SLC12A1	6557	bcgsc.ca	37	15	48593527	48593527	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC12A1	NM_001184832	exon26	c.C3112A	p.R1038R	.	.	46	4	37	0	.	24
SLC12A7	10723	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1094302	1094302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC12A7	NM_006598	exon2	c.C186A	p.S62R	.	.	60	20	123	2	.	138
SLC14A2	8170	ucsc.edu	37	18	43223115	43223115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC14A2	NM_001242692	exon10	c.T1145C	p.M382T	.	.	43	4	53	1	.	93
SLC17A9	63910	ucsc.edu	37	20	61596970	61596970	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC17A9	NM_022082	exon10	c.C954T	p.G318G	.	.	37	4	42	0	.	92
SLC25A18	83733	bcgsc.ca	37	22	18072911	18072911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC25A18	NM_031481	exon11	c.G857A	p.C286Y	.	.	88	5	82	0	.	90
SLC25A18	83733	bcgsc.ca	37	22	18072975	18072975	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC25A18	NM_031481	exon11	c.A921G	p.G307G	.	.	83	4	91	0	.	90
SLC25A52	147407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29339767	29339767	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001034172	exon1	c.C888T	p.I296I	.	.	131	46	132	0	.	.
SLC26A8	116369	bcgsc.ca	37	6	35945009	35945009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC26A8	NM_052961	exon9	c.T1145C	p.L382P	.	.	81	5	86	0	.	92
SLC2A11	66035	ucsc.edu	37	22	24217359	24217359	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC2A11	NM_030807	exon5	c.G358T	p.G120X	.	.	26	4	38	0	.	91
SLC2A12	154091	bcgsc.ca	37	6	134350049	134350049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC2A12	NM_145176	exon2	c.T914C	p.L305S	.	.	100	5	133	0	.	91
SLC30A5	64924	bcgsc.ca	37	5	68399832	68399832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC30A5	NM_024055	exon4	c.A317G	p.D106G	.	.	136	5	218	2	.	226
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44223037	44223037	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC35B2	NM_178148	exon4	c.C705T	p.Y235Y	.	.	63	28	77	0	.	91
SLC52A2	79581	bcgsc.ca	37	8	145583601	145583601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_024531	exon3	c.G449T	p.G150V	.	.	72	4	142	0	.	.
SLC6A17	388662	bcgsc.ca	37	1	110719263	110719263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC6A17	NM_001010898	exon6	c.A766G	p.S256G	.	.	64	5	117	1	.	92
SLC8A2	6543	bcgsc.ca	37	19	47944618	47944618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC8A2	NM_015063	exon5	c.C1843A	p.Q615K	.	.	59	4	104	0	.	94
SLFN11	91607	bcgsc.ca	37	17	33687326	33687326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLFN11	NM_152270	exon3	c.C1134A	p.S378R	.	.	70	4	76	0	.	159
SLITRK2	84631	bcgsc.ca	37	X	144904029	144904029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLITRK2	NM_001144005	exon5	c.G86A	p.C29Y	.	.	59	4	51	0	.	136
SLMO2	51012	bcgsc.ca	37	20	57611608	57611608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLMO2	NM_016045	exon5	c.C383A	p.A128D	.	.	92	5	80	0	.	45
SMARCA4	6597	ucsc.edu;bcgsc.ca	37	19	11118594	11118594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SMARCA4	NM_003072	exon14	c.A2018G	p.Q673R	.	.	28	4	22	0	.	1523
SMC5	23137	bcgsc.ca	37	9	72912988	72912988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SMC5	NM_015110	exon9	c.T1160C	p.L387P	.	.	58	4	69	0	.	229
SMIM14	201895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39553765	39553765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_174921	exon5	c.C281T	p.P94L	.	.	205	88	251	1	.	.
SNAPC4	6621	bcgsc.ca	37	9	139281996	139281996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SNAPC4	NM_003086	exon12	c.G1266T	p.Q422H	.	.	61	4	68	0	.	90
SNF8	11267	bcgsc.ca	37	17	47010628	47010628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SNF8	NM_007241	exon6	c.T503C	p.L168P	.	.	120	6	94	1	.	90
SNX31	169166	bcgsc.ca	37	8	101642575	101642575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SNX31	NM_152628	exon4	c.T301C	p.F101L	.	.	30	4	45	0	.	68
SORL1	6653	bcgsc.ca	37	11	121414362	121414362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SORL1	NM_003105	exon13	c.C1791A	p.F597L	.	.	48	4	60	0	.	228
SP2	6668	ucsc.edu;bcgsc.ca	37	17	46005144	46005144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SP2	NM_003110	exon7	c.A1796G	p.H599R	.	.	34	4	45	0	.	90
SPAG9	9043	ucsc.edu;bcgsc.ca	37	17	49072464	49072464	+	Missense_Mutation	SNP	C	C	A	rs201501137	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPAG9	NM_001130528	exon18	c.G2180T	p.R727L	.	.	39	4	52	0	C|0.999;T|0.000	659
SPARCL1	8404	ucsc.edu;bcgsc.ca	37	4	88412785	88412785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPARCL1	NM_004684	exon5	c.A1276G	p.R426G	.	.	46	4	79	0	.	91
SPEN	23013	bcgsc.ca	37	1	16256795	16256795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPEN	NM_015001	exon11	c.A4060G	p.S1354G	.	.	81	5	91	0	.	298
SPG11	80208	bcgsc.ca	37	15	44867143	44867143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPG11	NM_025137	exon31	c.A5963G	p.K1988R	.	.	60	5	64	0	.	95
SPNS3	201305	bcgsc.ca	37	17	4337450	4337450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPNS3	NM_182538	exon1	c.T188A	p.F63Y	.	.	69	4	65	0	.	153
SPPL2A	84888	bcgsc.ca	37	15	51017462	51017462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPPL2A	NM_032802	exon12	c.T1205C	p.L402P	.	.	162	5	199	0	.	90
SPRYD3	84926	bcgsc.ca	37	12	53461430	53461430	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPRYD3	NM_032840	exon9	c.901+2T>C	.	.	.	59	4	58	0	.	90
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158605719	158605719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPTA1	NM_003126	exon38	c.G5416C	p.E1806Q	.	.	72	55	48	0	.	142
SPTAN1	6709	bcgsc.ca	37	9	131345557	131345557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPTAN1	NM_003127	exon15	c.A2008G	p.K670E	.	.	49	4	59	0	.	158
SPTB	6710	bcgsc.ca	37	14	65268099	65268099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPTB	NM_001024858	exon6	c.G667T	p.D223Y	.	.	30	4	54	0	.	100
SPTBN1	6711	ucsc.edu	37	2	54856228	54856228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPTBN1	NM_003128	exon14	c.T1957C	p.W653R	.	.	40	4	83	1	.	140
SPTLC1	10558	bcgsc.ca	37	9	94821562	94821562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPTLC1	NM_006415	exon7	c.A589G	p.K197E	.	.	63	4	87	0	.	154
SRGAP1	57522	bcgsc.ca	37	12	64377737	64377737	+	Silent	SNP	T	T	C	rs148921790	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SRGAP1	NM_020762	exon2	c.T78C	p.A26A	.	.	56	4	44	0	T|1.000;A|0.000	653
ST18	9705	ucsc.edu;bcgsc.ca	37	8	53085085	53085085	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ST18	NM_014682	exon10	c.C336A	p.S112S	.	.	30	4	28	0	.	95
STAB2	55576	bcgsc.ca	37	12	104060113	104060113	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STAB2	NM_017564	exon19	c.T2067C	p.P689P	.	.	57	4	63	0	.	104
STAG3	10734	bcgsc.ca	37	7	99779808	99779808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STAG3	NM_012447	exon3	c.C212T	p.T71I	.	.	94	6	78	0	.	543
STARD8	9754	bcgsc.ca	37	X	67942365	67942365	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STARD8	NM_001142503	exon12	c.A2676G	p.A892A	.	.	63	4	74	0	.	196
STC1	6781	ucsc.edu	37	8	23709762	23709762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STC1	NM_003155	exon2	c.A254G	p.D85G	.	.	44	4	87	0	.	94
STEAP4	79689	bcgsc.ca	37	7	87912447	87912447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STEAP4	NM_001205315	exon4	c.A493G	p.R165G	.	.	217	7	187	1	.	90
STK31	56164	bcgsc.ca	37	7	23808624	23808624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STK31	NM_031414	exon12	c.T1427C	p.V476A	.	.	61	4	72	0	.	338
STON1-GTF2A1L	286749	bcgsc.ca	37	2	48906553	48906553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STON1-GTF2A1L	NM_172311	exon11	c.C3521A	p.A1174E	.	.	208	6	218	0	.	27
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81737182	81737182	+	Silent	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STON2	NM_001256430	exon7	c.T2445G	p.L815L	.	.	34	11	46	0	.	95
STRN	6801	bcgsc.ca	37	2	37082439	37082439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STRN	NM_003162	exon15	c.G1894T	p.A632S	.	.	146	5	162	1	.	91
SUCLA2	8803	bcgsc.ca	37	13	48547420	48547420	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SUCLA2	NM_003850	exon5	c.C642A	p.I214I	.	.	107	5	111	0	.	226
SVEP1	79987	bcgsc.ca	37	9	113169462	113169462	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SVEP1	NM_153366	exon38	c.G8418A	p.V2806V	.	.	232	7	277	0	.	75
SYNE2	23224	bcgsc.ca	37	14	64488045	64488045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SYNE2	NM_182914	exon36	c.T5164C	p.S1722P	.	.	60	6	64	0	.	164
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62550920	62550920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SYT16	NM_031914	exon5	c.G1441T	p.G481W	.	.	71	26	81	0	.	23
TACC2	10579	bcgsc.ca	37	10	123970218	123970218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TACC2	NM_206862	exon9	c.A6278G	p.D2093G	.	.	61	4	67	0	.	296
TADA2A	6871	bcgsc.ca	37	17	35827610	35827610	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TADA2A	NM_001488	exon12	c.A876G	p.A292A	.	.	56	4	62	0	.	230
TAF15	8148	bcgsc.ca	37	17	34165489	34165489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TAF15	NM_139215	exon11	c.C845A	p.P282Q	.	.	47	4	58	0	.	723
TAS2R1	50834	bcgsc.ca	37	5	9629363	9629363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TAS2R1	NM_019599	exon1	c.T782C	p.F261S	.	.	97	5	76	0	.	93
TBC1D17	79735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50387721	50387721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TBC1D17	NM_024682	exon12	c.G1249A	p.V417I	.	.	80	39	87	0	.	90
TCEANC	170082	bcgsc.ca	37	X	13680660	13680660	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TCEANC	NM_152634	exon4	c.T123C	p.A41A	.	.	88	4	91	0	.	41
TCF12	6938	bcgsc.ca	37	15	57524976	57524976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TCF12	NM_207036	exon11	c.C892A	p.H298N	.	.	145	5	154	0	.	1085
TCF20	6942	bcgsc.ca	37	22	42565866	42565866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TCF20	NM_181492	exon3	c.G5786A	p.C1929Y	.	.	24	4	28	0	.	95
TENM3	55714	bcgsc.ca	37	4	183245229	183245229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001080477	exon1	c.A56G	p.K19R	.	.	51	4	48	0	.	.
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183267884	183267884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001080477	exon2	c.C313T	p.L105F	.	.	71	31	92	0	.	.
TENM4	26011	bcgsc.ca	37	11	78433747	78433747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001098816	exon24	c.C3766T	p.P1256S	.	.	46	4	35	0	.	.
TESK2	10420	bcgsc.ca	37	1	45887473	45887473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TESK2	NM_007170	exon3	c.A268G	p.T90A	.	.	60	4	66	0	.	624
TFAP2B	7021	bcgsc.ca	37	6	50803874	50803874	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TFAP2B	NM_003221	exon4	c.A702G	p.P234P	.	.	46	4	78	0	.	90
TFCP2	7024	ucsc.edu;bcgsc.ca	37	12	51500323	51500323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TFCP2	NM_001173452	exon8	c.T902C	p.F301S	.	.	32	4	50	0	.	91
TGFBRAP1	9392	ucsc.edu	37	2	105889372	105889372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TGFBRAP1	NM_004257	exon10	c.C1912A	p.Q638K	.	.	44	4	58	0	.	91
THOC5	8563	bcgsc.ca	37	22	29927949	29927949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	THOC5	NM_001002878	exon9	c.T718C	p.S240P	.	.	70	4	63	0	.	585
THOC7	80145	bcgsc.ca	37	3	63825369	63825369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	THOC7	NM_025075	exon2	c.T100C	p.F34L	.	.	70	4	83	0	.	92
THRB	7068	bcgsc.ca	37	3	24185146	24185146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	THRB	NM_000461	exon7	c.A584G	p.N195S	.	.	113	7	165	1	.	227
TIE1	7075	bcgsc.ca	37	1	43774662	43774662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TIE1	NM_005424	exon8	c.A1048G	p.I350V	.	.	105	7	102	0	.	1404
TIMELESS	8914	bcgsc.ca	37	12	56811534	56811534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TIMELESS	NM_003920	exon29	c.A3593G	p.K1198R	.	.	215	7	237	2	.	159
TIMELESS	8914	bcgsc.ca	37	12	56823999	56823999	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TIMELESS	NM_003920	exon10	c.C976A	p.R326R	.	.	94	6	150	0	.	159
TLN2	83660	bcgsc.ca	37	15	63088333	63088333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TLN2	NM_015059	exon44	c.T5891C	p.L1964S	.	.	61	4	90	0	.	573
TLN2	83660	bcgsc.ca	37	15	63127994	63127994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TLN2	NM_015059	exon53	c.C7187A	p.S2396Y	.	.	81	4	114	0	.	573
TM9SF2	9375	bcgsc.ca	37	13	100193830	100193830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TM9SF2	NM_004800	exon9	c.T926C	p.V309A	.	.	136	5	196	0	.	91
TMEM189-UBE2V1	387522	ucsc.edu	37	20	48699382	48699382	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMEM189-UBE2V1	NM_199203	exon8	c.G1036T	p.E346X	.	.	35	4	51	0	.	454
TMEM260	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57070549	57070549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_017799	exon4	c.G361A	p.A121T	.	.	174	67	223	0	.	.
TMEM70	54968	bcgsc.ca	37	8	74893393	74893393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMEM70	NM_017866	exon3	c.T320C	p.V107A	.	.	89	4	101	1	.	91
TMPO	7112	bcgsc.ca	37	12	98941414	98941414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMPO	NM_001032283	exon9	c.G1143T	p.R381S	.	.	133	5	148	0	.	93
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	98938066	98938066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMPO	NM_001032283	exon5	c.G722A	p.G241E	.	.	112	57	117	0	.	93
TMSB10	9168	bcgsc.ca	37	2	85133149	85133149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMSB10	NM_021103	exon2	c.A8G	p.D3G	.	.	60	4	81	0	.	514
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29659790	29659790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMTC1	NM_001193451	exon18	c.G2638A	p.D880N	.	.	119	47	149	0	.	90
TMTC2	160335	bcgsc.ca	37	12	83379795	83379795	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMTC2	NM_152588	exon8	c.T2040C	p.H680H	.	.	83	5	94	0	.	92
TP53BP1	7158	bcgsc.ca	37	15	43749328	43749328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TP53BP1	NM_001141980	exon12	c.A1478G	p.E493G	.	.	78	4	81	0	.	294
TP53BP2	7159	bcgsc.ca	37	1	223986000	223986000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TP53BP2	NM_001031685	exon12	c.A1865G	p.Q622R	.	.	181	6	123	0	.	229
TPGS2	25941	bcgsc.ca	37	18	34376837	34376837	+	Silent	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_015476	exon7	c.A834C	p.G278G	.	.	147	21	123	2	.	.
TPH2	121278	bcgsc.ca	37	12	72366426	72366426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TPH2	NM_173353	exon6	c.C736A	p.L246M	.	.	56	5	67	0	.	93
TRAIP	10293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49867199	49867199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAIP	NM_005879	exon13	c.G1087A	p.E363K	.	.	19	11	31	0	.	849
TRAK1	22906	bcgsc.ca	37	3	42229637	42229637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAK1	NM_001265608	exon5	c.C581A	p.P194Q	.	.	56	4	66	0	.	91
TRAK2	66008	broad.mit.edu;bcgsc.ca	37	2	202245315	202245315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAK2	NM_015049	exon16	c.C2696T	p.A899V	.	.	98	39	119	2	.	90
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202245316	202245316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAK2	NM_015049	exon16	c.G2695C	p.A899P	.	.	99	42	118	0	.	90
TRAP1	10131	bcgsc.ca	37	16	3713466	3713466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAP1	NM_016292	exon14	c.T1667C	p.V556A	.	.	75	5	106	0	.	226
TRAPPC11	60684	bcgsc.ca	37	4	184629643	184629643	+	Silent	SNP	A	A	G	rs113269326	byfrequency	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_021942	exon29	c.A3273G	p.P1091P	.	.	112	6	123	0	A|0.997;G|0.003	.
TRIM37	4591	bcgsc.ca	37	17	57126554	57126554	+	Silent	SNP	C	C	T	rs2136373	bycluster;byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRIM37	NM_015294	exon15	c.G1515A	p.Q505Q	.	.	71	4	82	0	C|0.995;A|0.005	660
TRIOBP	11078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38120914	38120914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRIOBP	NM_001039141	exon7	c.A2351G	p.N784S	.	.	138	69	148	0	.	136
TRIP11	9321	bcgsc.ca	37	14	92488006	92488006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRIP11	NM_004239	exon4	c.A482G	p.D161G	.	.	63	4	62	0	.	1400
TRIT1	54802	bcgsc.ca	37	1	40315871	40315871	+	Missense_Mutation	SNP	G	G	T	rs34889376	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRIT1	NM_017646	exon5	c.C623A	p.T208K	.	.	57	4	88	0	G|0.996;A|0.004	91
TRMT1	55621	bcgsc.ca	37	19	13218572	13218572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRMT1	NM_001136035	exon13	c.G1499A	p.R500H	.	.	48	4	53	0	.	92
TRMU	55687	bcgsc.ca	37	22	46746318	46746318	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRMU	NM_018006	exon5	c.C609A	p.I203I	.	.	54	4	66	0	.	23
TRPA1	8989	bcgsc.ca	37	8	72951124	72951124	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRPA1	NM_007332	exon19	c.T2271C	p.D757D	.	.	54	4	37	0	.	230
TRPC5	7224	bcgsc.ca	37	X	111097155	111097155	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRPC5	NM_012471	exon4	c.C1080A	p.I360I	.	.	65	4	77	0	.	130
TRPC7	57113	bcgsc.ca	37	5	135692877	135692877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001167576	exon2	c.A199G	p.K67E	.	.	50	4	77	0	.	.
TRPM4	54795	bcgsc.ca	37	19	49693986	49693986	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRPM4	NM_001195227	exon16	c.A2166G	p.L722L	.	.	53	4	79	0	.	91
TRPM6	140803	bcgsc.ca	37	9	77386638	77386638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRPM6	NM_017662	exon25	c.A3517G	p.I1173V	.	.	72	4	77	0	.	335
TRPM7	54822	bcgsc.ca	37	15	50884183	50884183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRPM7	NM_017672	exon26	c.A4249G	p.T1417A	.	.	93	4	106	0	.	392
TRPM7	54822	bcgsc.ca	37	15	50904824	50904824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRPM7	NM_017672	exon16	c.T1973C	p.I658T	.	.	59	4	35	0	.	392
TRUB2	26995	bcgsc.ca	37	9	131076148	131076148	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRUB2	NM_015679	exon5	c.C399A	p.L133L	.	.	35	4	55	0	.	91
TTC17	55761	bcgsc.ca	37	11	43418322	43418322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTC17	NM_018259	exon6	c.T727C	p.Y243H	.	.	81	4	93	0	.	95
TTC27	55622	bcgsc.ca	37	2	32875219	32875219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTC27	NM_017735	exon5	c.A559G	p.R187G	.	.	170	6	198	0	.	90
TTC37	9652	bcgsc.ca	37	5	94852988	94852988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTC37	NM_014639	exon21	c.A2153G	p.K718R	.	.	57	4	39	0	.	94
TTK	7272	bcgsc.ca	37	6	80741219	80741219	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTK	NM_003318	exon14	c.G1557T	p.S519S	.	.	138	7	194	0	.	1299
TTN	7273	bcgsc.ca	37	2	179407656	179407656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTN	NM_001267550	exon348	c.T96925C	p.S32309P	.	.	67	5	55	0	.	636
TTN	7273	bcgsc.ca	37	2	179474257	179474257	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTN	NM_001267550	exon273	c.A51780G	p.K17260K	.	.	78	4	96	0	.	636
TTN	7273	bcgsc.ca	37	2	179476169	179476169	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTN	NM_001267550	exon269	c.A50787G	p.R16929R	.	.	68	4	55	0	.	636
TTN	7273	bcgsc.ca	37	2	179540653	179540653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTN	NM_001267550	exon148	c.C34448A	p.A11483D	.	.	79	4	69	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560596	179560596	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTN	NM_001267550	exon114	c.T31203C	p.Y10401Y	.	.	190	85	236	0	.	636
TTYH1	57348	bcgsc.ca	37	19	54941999	54941999	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTYH1	NM_020659	exon9	c.T948C	p.T316T	.	.	49	4	94	0	.	90
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	.	.	172	8	178	7	G|0.998;A|0.002	90
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_145301	exon3	c.G152A	p.C51Y	.	.	318	16	379	18	.	.
TXLNG2P	246126	bcgsc.ca	37	Y	21761666	21761666	+	RNA	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	72	4	63	0	.	.
TXNDC16	57544	ucsc.edu;bcgsc.ca	37	14	52981605	52981605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TXNDC16	NM_020784	exon8	c.A598G	p.S200G	.	.	47	4	50	0	.	22
UBR1	197131	bcgsc.ca	37	15	43269046	43269046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UBR1	NM_174916	exon39	c.T4238C	p.F1413S	.	.	87	4	91	0	.	91
UBR4	23352	bcgsc.ca	37	1	19503084	19503084	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UBR4	NM_020765	exon21	c.2773+2T>C	.	.	.	92	4	88	0	.	612
UBR5	51366	bcgsc.ca	37	8	103309737	103309737	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UBR5	NM_015902	exon27	c.T3522C	p.C1174C	.	.	132	5	128	0	.	761
UGT2B10	7365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69682095	69682095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UGT2B10	.	.	.	.	.	.	241	97	236	0	.	65
UIMC1	51720	bcgsc.ca	37	5	176397799	176397799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UIMC1	NM_016290	exon4	c.A301G	p.S101G	.	.	51	4	55	0	.	208
ULK4	54986	bcgsc.ca	37	3	41746747	41746747	+	Silent	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ULK4	NM_017886	exon26	c.A2685T	p.I895I	.	.	55	4	87	0	.	297
UNC13B	10497	bcgsc.ca	37	9	35399281	35399281	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UNC13B	NM_006377	exon33	c.G3951T	p.T1317T	.	.	86	5	112	0	.	157
UNC13B	10497	bcgsc.ca	37	9	35403556	35403556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UNC13B	NM_006377	exon38	c.A4450G	p.S1484G	.	.	98	5	100	1	.	157
UNC13C	440279	bcgsc.ca	37	15	54916047	54916047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UNC13C	NM_001080534	exon30	c.T6254C	p.V2085A	.	.	76	4	81	0	.	51
UNK	85451	ucsc.edu;bcgsc.ca	37	17	73808351	73808351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UNK	NM_001080419	exon3	c.C473T	p.S158F	.	.	48	4	61	0	.	68
USP13	8975	bcgsc.ca	37	3	179483596	179483596	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	USP13	NM_003940	exon19	c.G2373A	p.E791E	.	.	67	4	62	0	.	659
USP16	10600	bcgsc.ca	37	21	30426159	30426159	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	USP16	NM_006447	exon17	c.T2230C	p.L744L	.	.	62	4	94	0	.	659
USP19	10869	bcgsc.ca	37	3	49150011	49150011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	USP19	NM_001199161	exon18	c.A2557G	p.T853A	.	.	57	4	102	0	.	663
USP40	55230	bcgsc.ca	37	2	234465502	234465502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	USP40	NM_018218	exon4	c.A581G	p.Q194R	.	.	83	5	122	0	.	455
USP48	84196	bcgsc.ca	37	1	22050446	22050446	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	USP48	NM_032236	exon12	c.T1593C	p.S531S	.	.	57	4	73	0	.	659
USP54	159195	bcgsc.ca	37	10	75283406	75283406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	USP54	NM_152586	exon15	c.A2297G	p.E766G	.	.	105	5	95	1	.	721
USP9X	8239	bcgsc.ca	37	X	40988360	40988360	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	USP9X	NM_001039591	exon3	c.A204G	p.P68P	.	.	80	4	88	0	.	563
UTP20	27340	bcgsc.ca	37	12	101715365	101715365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UTP20	NM_014503	exon25	c.T2999C	p.V1000A	.	.	81	4	75	0	.	155
VEPH1	79674	bcgsc.ca	37	3	156983441	156983441	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VEPH1	NM_001167912	exon13	c.A2139G	p.Q713Q	.	.	93	5	94	0	.	155
VEZF1	7716	hgsc.bcm.edu	37	17	56056601	56056601	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VEZF1	NM_007146	exon5	c.A1050G	p.Q350Q	.	.	112	10	84	0	.	136
VIL1	7429	bcgsc.ca	37	2	219303441	219303441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VIL1	NM_007127	exon18	c.A2221G	p.I741V	.	.	32	4	48	0	.	91
VPS13A	23230	bcgsc.ca	37	9	79983016	79983016	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VPS13A	NM_001018038	exon62	c.T8517C	p.D2839D	.	.	67	5	69	0	.	161
VPS13B	157680	bcgsc.ca	37	8	100286536	100286536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VPS13B	NM_152564	exon18	c.A2626G	p.I876V	.	.	82	4	74	0	.	301
VPS13D	55187	bcgsc.ca	37	1	12516053	12516053	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VPS13D	NM_015378	exon66	c.12334-1G>T	.	.	.	20	3	44	0	.	95
VWDE	221806	bcgsc.ca	37	7	12397029	12397029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VWDE	NM_001135924	exon17	c.T3387A	p.F1129L	.	.	70	4	82	0	.	68
VWDE	221806	bcgsc.ca	37	7	12410304	12410304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VWDE	NM_001135924	exon11	c.G1774T	p.V592F	.	.	56	4	45	0	.	68
WDFY3	23001	bcgsc.ca	37	4	85741247	85741247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDFY3	NM_014991	exon12	c.A1684G	p.T562A	.	.	71	4	88	0	.	93
WDR18	57418	ucsc.edu;bcgsc.ca	37	19	990892	990892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR18	NM_024100	exon5	c.T638C	p.L213P	.	.	49	5	75	0	.	91
WDR3	10885	bcgsc.ca	37	1	118479390	118479390	+	Splice_Site	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR3	NM_006784	exon4	c.382-2A>T	.	.	.	56	4	91	0	.	91
WDR36	134430	bcgsc.ca	37	5	110456282	110456282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR36	NM_139281	exon18	c.C2161A	p.Q721K	.	.	67	4	81	0	.	92
WDR49	151790	bcgsc.ca	37	3	167254709	167254709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR49	NM_178824	exon7	c.C847T	p.H283Y	.	.	68	4	66	0	.	155
WDR52	55779	bcgsc.ca	37	3	113145058	113145058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR52	NM_001164496	exon4	c.A320G	p.E107G	.	.	145	5	174	0	.	90
WDR76	79968	bcgsc.ca	37	15	44136164	44136164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR76	NM_024908	exon8	c.C944T	p.P315L	.	.	138	5	139	0	.	90
WDR78	79819	bcgsc.ca	37	1	67337124	67337124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR78	NM_207014	exon6	c.T869C	p.M290T	.	.	88	5	119	0	.	92
WWP2	11060	ucsc.edu;bcgsc.ca	37	16	69973316	69973316	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WWP2	NM_001270454	exon23	c.G2513C	p.C838S	.	.	25	4	36	0	.	658
XIAP	331	bcgsc.ca	37	X	123040975	123040975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIAP	NM_001204401	exon7	c.A1438G	p.K480E	.	.	75	4	113	0	.	1084
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168100450	168100450	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIRP2	NM_152381	exon9	c.T2548C	p.L850L	.	.	135	55	173	0	.	104
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104420	168104420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIRP2	NM_152381	exon9	c.G6518T	p.G2173V	.	.	116	55	124	0	.	104
XPO4	64328	bcgsc.ca	37	13	21381713	21381713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XPO4	NM_022459	exon13	c.A1700G	p.E567G	.	.	79	4	77	0	.	272
ZBBX	79740	bcgsc.ca	37	3	167035303	167035303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZBBX	NM_024687	exon13	c.C1066A	p.Q356K	.	.	127	6	144	0	.	92
ZBTB38	253461	ucsc.edu;bcgsc.ca	37	3	141162187	141162187	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZBTB38	NM_001080412	exon8	c.C957T	p.S319S	.	.	46	5	42	0	.	25
ZC3H12D	340152	ucsc.edu	37	6	149777874	149777874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_207360	exon4	c.T608C	p.L203P	.	.	36	4	63	0	.	.
ZC3H14	79882	bcgsc.ca	37	14	89061262	89061262	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZC3H14	NM_207662	exon1	c.A192G	p.E64E	.	.	66	4	85	0	.	93
ZCCHC2	54877	bcgsc.ca	37	18	60230281	60230281	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZCCHC2	NM_017742	exon9	c.C1590A	p.T530T	.	.	121	6	145	0	.	432
ZCCHC5	203430	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77913190	77913190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZCCHC5	NM_152694	exon2	c.C728A	p.T243N	.	.	38	35	39	1	.	131
ZEB1	6935	bcgsc.ca	37	10	31810683	31810683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZEB1	NM_001174096	exon7	c.T2423C	p.V808A	.	.	119	7	123	0	.	518
ZFHX4	79776	bcgsc.ca	37	8	77764800	77764800	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZFHX4	NM_024721	exon10	c.A5643G	p.E1881E	.	.	77	5	77	0	.	98
ZFP30	22835	bcgsc.ca	37	19	38134240	38134240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZFP30	NM_014898	exon5	c.A161G	p.D54G	.	.	62	4	81	0	.	90
ZGLP1	100125288	bcgsc.ca	37	19	10416114	10416114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZGLP1	NM_001103167	exon3	c.G650T	p.W217L	.	.	62	4	63	0	.	23
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20567272	20567272	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZMYM2	NM_001190964	exon4	c.G60A	p.G20G	.	.	123	54	99	0	.	685
ZMYND19	116225	bcgsc.ca	37	9	140482250	140482250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZMYND19	NM_138462	exon3	c.G137A	p.G46E	.	.	59	4	82	0	.	91
ZNF160	90338	ucsc.edu;bcgsc.ca	37	19	53572755	53572755	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF160	NM_001102603	exon7	c.T1032C	p.N344N	.	.	61	6	58	0	.	90
ZNF197	10168	ucsc.edu;bcgsc.ca	37	3	44684049	44684049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF197	NM_006991	exon6	c.A1427G	p.H476R	.	.	40	5	40	0	.	230
ZNF222	7673	bcgsc.ca	37	19	44536175	44536175	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF222	NM_001129996	exon4	c.T468C	p.P156P	.	.	81	5	111	0	.	93
ZNF23	7571	bcgsc.ca	37	16	71483162	71483162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF23	NM_145911	exon6	c.A766G	p.M256V	.	.	105	5	111	1	.	90
ZNF24	7572	bcgsc.ca	37	18	32920201	32920201	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF24	NM_006965	exon2	c.A414G	p.G138G	.	.	104	5	94	0	.	90
ZNF398	57541	bcgsc.ca	37	7	148876849	148876849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF398	NM_170686	exon6	c.A1885G	p.T629A	.	.	46	4	38	0	.	91
ZNF43	7594	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21990784	21990784	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF43	NM_001256653	exon4	c.A2082G	p.K694K	.	.	13	6	17	0	.	154
ZNF507	22847	bcgsc.ca	37	19	32847545	32847545	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF507	NM_001136156	exon4	c.A2151G	p.R717R	.	.	47	4	61	0	.	230
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22363944	22363944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF676	NM_001001411	exon3	c.C575A	p.T192N	.	.	55	29	46	0	.	90
ZNF699	374879	bcgsc.ca	37	19	9406972	9406972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF699	NM_198535	exon5	c.A1108G	p.K370E	.	.	46	4	36	0	.	68
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57133787	57133787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF71	NM_021216	exon3	c.G1132T	p.G378C	.	.	78	30	118	0	.	91
ZNF773	374928	bcgsc.ca	37	19	58018185	58018185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF773	NM_198542	exon4	c.A722G	p.H241R	.	.	77	4	54	0	.	91
ZNF7	7553	bcgsc.ca	37	8	146054862	146054862	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF7	NM_003416	exon3	c.4-1G>T	.	.	.	125	5	187	0	.	94
ZNF793	390927	bcgsc.ca	37	19	38028151	38028151	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF793	NM_001013659	exon8	c.C591T	p.F197F	.	.	47	4	47	0	.	68
ZNF83	55769	bcgsc.ca	37	19	53117514	53117514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF83	NM_018300	exon3	c.T304C	p.F102L	.	.	122	5	135	0	.	91
ZSCAN5A	79149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56735066	56735066	+	Silent	SNP	T	T	C	rs199886337		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZSCAN5A	NM_024303	exon3	c.A522G	p.P174P	.	.	32	16	44	0	T|0.999;C|0.001	155
ZSWIM4	65249	ucsc.edu	37	19	13919725	13919725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZSWIM4	NM_023072	exon4	c.A788G	p.E263G	.	.	48	5	76	0	.	90
AC116050.1	0	bcgsc.ca	37	2	91800789	91800790	+	RNA	DNP	CC	CC	AA	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	.	.	.	.	.	
