Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1CF	29974	hgsc.bcm.edu	37	10	52619608	52619608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	A1CF	NM_138932	exon3	c.G93T	p.L31F	.	.	80	4	105	0	.	68
AAAS	8086	hgsc.bcm.edu	37	12	53701649	53701649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AAAS	NM_015665	exon15	c.A1396G	p.K466E	.	.	100	4	101	0	.	91
AASDH	132949	broad.mit.edu;bcgsc.ca	37	4	57204794	57204794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AASDH	NM_181806	exon15	c.C3071A	p.P1024Q	.	.	288	10	287	0	.	94
ABAT	18	hgsc.bcm.edu	37	16	8866644	8866644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABAT	NM_001127448	exon12	c.A824G	p.D275G	.	.	100	4	103	0	.	91
ABCA2	20	ucsc.edu;bcgsc.ca	37	9	139911383	139911383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA2	NM_212533	exon19	c.C2837T	p.A946V	.	.	30	4	49	0	.	90
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2339468	2339468	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA3	NM_001089	exon20	c.G2667A	p.E889E	.	.	67	16	110	0	.	1015
ABCA4	24	hgsc.bcm.edu	37	1	94520858	94520858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA4	NM_000350	exon16	c.C2396A	p.P799Q	.	.	64	4	69	0	.	162
ABCA9	10350	hgsc.bcm.edu;bcgsc.ca	37	17	67017907	67017907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA9	NM_080283	exon18	c.G2377A	p.G793R	.	.	57	4	62	0	.	95
ABCC12	94160	bcgsc.ca	37	16	48141321	48141321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC12	NM_033226	exon18	c.T2387C	p.L796P	.	.	185	7	260	1	.	93
ABCC2	1244	bcgsc.ca	37	10	101595918	101595918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC2	NM_000392	exon25	c.A3485G	p.H1162R	.	.	240	7	314	1	.	91
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101567952	101567952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC2	NM_000392	exon13	c.G1781A	p.S594N	.	.	115	39	160	0	.	91
ABCC3	8714	hgsc.bcm.edu	37	17	48750986	48750986	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC3	NM_003786	exon19	c.G2566T	p.E856X	.	.	87	4	138	0	.	93
ABCC9	10060	hgsc.bcm.edu;bcgsc.ca	37	12	21962812	21962812	+	Missense_Mutation	SNP	A	A	G	rs144125604		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC9	NM_005691	exon35	c.T4289C	p.M1430T	.	.	45	4	60	0	A|1.000;G|0.000	96
ABHD2	11057	bcgsc.ca	37	15	89734378	89734378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABHD2	NM_007011	exon13	c.A994G	p.R332G	.	.	50	4	51	0	.	227
ABL1	25	mdanderson.org	37	9	133759918	133759918	+	Silent	SNP	T	T	C	rs144838952	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABL1	NM_007313	exon11	c.T2298C	p.F766F	.	.	20	3	36	0	T|1.000;A|0.000	3810
ACACB	32	hgsc.bcm.edu	37	12	109660331	109660331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACACB	NM_001093	exon24	c.A3584G	p.D1195G	.	.	88	4	132	0	.	98
ACADL	33	bcgsc.ca	37	2	211060064	211060064	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACADL	NM_001608	exon10	c.985-2A>G	.	.	.	149	6	197	1	.	90
ACAP3	116983	hgsc.bcm.edu	37	1	1231249	1231249	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACAP3	NM_030649	exon18	c.A1572G	p.A524A	.	.	83	4	110	0	.	90
ACCS	84680	hgsc.bcm.edu	37	11	44089232	44089232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACCS	NM_032592	exon2	c.A55G	p.T19A	.	.	112	5	127	0	.	155
ACMSD	130013	broad.mit.edu;bcgsc.ca	37	2	135628620	135628620	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACMSD	NM_138326	exon7	c.C666T	p.F222F	.	.	257	8	331	0	.	91
ACN9	57001	broad.mit.edu;bcgsc.ca	37	7	96810515	96810515	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACN9	NM_020186	exon2	c.A366G	p.K122K	.	.	289	8	266	2	.	90
ACSBG1	23205	hgsc.bcm.edu	37	15	78474373	78474373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACSBG1	NM_015162	exon8	c.G1009T	p.D337Y	.	.	48	4	70	0	.	91
ACTN4	81	hgsc.bcm.edu	37	19	39214663	39214663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACTN4	NM_004924	exon14	c.C1638A	p.S546R	.	.	94	4	145	0	.	90
ACY3	91703	hgsc.bcm.edu	37	11	67410349	67410349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACY3	NM_080658	exon8	c.A806G	p.D269G	.	.	91	4	73	0	.	90
ADAM10	102	bcgsc.ca	37	15	58889781	58889781	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM10	NM_001110	exon16	c.C2212A	p.R738R	.	.	149	5	155	0	.	227
ADAM18	8749	bcgsc.ca	37	8	39506025	39506025	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM18	NM_014237	exon12	c.A1209G	p.E403E	.	.	174	6	273	1	.	228
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	39678655	39678655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM2	NM_001464	exon6	c.A379G	p.I127V	.	.	99	5	163	0	.	227
ADAM8	101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135087474	135087474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM8	NM_001164489	exon4	c.C287T	p.T96M	.	.	62	17	101	0	.	90
ADAM9	8754	hgsc.bcm.edu	37	8	38934925	38934925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM9	NM_003816	exon16	c.G1876A	p.G626R	.	.	85	4	173	0	.	227
ADAMTSL3	57188	bcgsc.ca	37	15	84558928	84558928	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAMTSL3	NM_207517	exon11	c.T1140C	p.C380C	.	.	162	5	211	0	.	1153
ADAMTSL3	57188	hgsc.bcm.edu	37	15	84561455	84561455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAMTSL3	NM_207517	exon13	c.A1282G	p.T428A	.	.	91	4	120	0	.	1153
ADAP1	11033	hgsc.bcm.edu	37	7	975141	975141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAP1	NM_006869	exon2	c.A83G	p.D28G	.	.	93	4	143	0	.	91
ADAT3	113179	hgsc.bcm.edu	37	19	1912939	1912939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAT3	NM_138422	exon2	c.A893G	p.Y298C	.	.	87	4	53	0	.	154
ADCK1	57143	hgsc.bcm.edu	37	14	78374194	78374194	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCK1	NM_020421	exon7	c.G790T	p.E264X	.	.	71	5	147	0	.	334
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41206291	41206291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCK4	NM_024876	exon11	c.G959T	p.R320L	.	.	77	29	109	0	.	319
ADCY10	55811	broad.mit.edu;bcgsc.ca	37	1	167849366	167849366	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCY10	NM_018417	exon11	c.A1203G	p.R401R	.	.	136	6	176	1	.	493
ADCY8	114	hgsc.bcm.edu	37	8	131833641	131833641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCY8	NM_001115	exon13	c.T2701C	p.S901P	.	.	97	4	88	0	.	157
ADRA1A	148	bcgsc.ca	37	8	26627747	26627747	+	Silent	SNP	G	G	A	rs141763415	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADRA1A	NM_000680	exon2	c.C1320T	p.T440T	.	.	83	4	223	1	G|1.000;T|0.000	587
AFF2	2334	hgsc.bcm.edu	37	X	148037651	148037651	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AFF2	NM_002025	exon11	c.C2076A	p.P692P	.	.	85	4	100	0	.	135
AFF3	3899	hgsc.bcm.edu;bcgsc.ca	37	2	100185316	100185316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AFF3	NM_001025108	exon18	c.A3055G	p.M1019V	.	.	121	6	125	0	.	230
AFP	174	bcgsc.ca	37	4	74316439	74316439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AFP	NM_001134	exon11	c.A1397G	p.E466G	.	.	218	6	254	1	.	91
AGAP3	116988	hgsc.bcm.edu	37	7	150814236	150814236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AGAP3	NM_001042535	exon3	c.A445G	p.T149A	.	.	100	4	121	0	.	92
AGFG2	3268	hgsc.bcm.edu	37	7	100161852	100161852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AGFG2	NM_006076	exon11	c.G1312T	p.G438W	.	.	93	4	117	0	.	90
AGXT	189	hgsc.bcm.edu;bcgsc.ca	37	2	241813425	241813425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AGXT	NM_000030	exon6	c.A626G	p.K209R	.	.	52	4	74	0	.	90
AHDC1	27245	hgsc.bcm.edu	37	1	27876114	27876114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AHDC1	NM_001029882	exon6	c.G2513A	p.G838D	.	.	99	4	170	0	.	90
AICDA	57379	hgsc.bcm.edu	37	12	8759503	8759503	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AICDA	NM_020661	exon2	c.T114C	p.S38S	.	.	57	4	71	0	.	229
AKAP4	8852	bcgsc.ca	37	X	49957908	49957908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AKAP4	NM_003886	exon5	c.C1456A	p.P486T	.	.	93	4	112	1	.	540
AKAP9	10142	broad.mit.edu;bcgsc.ca	37	7	91630847	91630847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AKAP9	NM_005751	exon8	c.T1616C	p.F539S	.	.	219	7	157	0	.	755
AKR1E2	83592	hgsc.bcm.edu	37	10	4879675	4879675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AKR1E2	NM_001040177	exon5	c.G484T	p.G162W	.	.	81	4	98	0	.	68
AKT2	208	hgsc.bcm.edu	37	19	40743931	40743931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AKT2	NM_001626	exon9	c.T776C	p.I259T	.	.	82	4	127	0	.	978
ALCAM	214	bcgsc.ca	37	3	105264167	105264167	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALCAM	NM_001627	exon9	c.G1092T	p.V364V	.	.	397	10	463	0	.	92
ALDH6A1	4329	hgsc.bcm.edu	37	14	74534081	74534081	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALDH6A1	NM_005589	exon9	c.1042+2T>C	.	.	.	73	4	63	0	.	90
ALDH7A1	501	ucsc.edu;bcgsc.ca	37	5	125887798	125887798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALDH7A1	NM_001182	exon14	c.C1232A	p.P411Q	.	.	65	6	90	1	.	227
ALDH9A1	223	hgsc.bcm.edu	37	1	165664622	165664622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALDH9A1	NM_000696	exon2	c.C194A	p.A65D	.	.	96	4	98	0	.	226
ALG13	79868	hgsc.bcm.edu;bcgsc.ca	37	X	110980011	110980011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALG13	NM_001099922	exon23	c.G2599T	p.G867C	.	.	166	7	262	0	.	130
ALPL	249	hgsc.bcm.edu;bcgsc.ca	37	1	21902359	21902359	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALPL	NM_000478	exon10	c.G1131T	p.A377A	.	.	108	5	129	0	.	94
AMN	81693	hgsc.bcm.edu	37	14	103396365	103396365	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AMN	NM_030943	exon9	c.C948A	p.P316P	.	.	76	4	114	0	.	90
ANAPC2	29882	hgsc.bcm.edu	37	9	140077667	140077667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANAPC2	NM_013366	exon6	c.T1196C	p.L399P	.	.	93	5	136	0	.	227
ANAPC2	29882	hgsc.bcm.edu	37	9	140082090	140082090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANAPC2	NM_013366	exon2	c.A583G	p.T195A	.	.	95	4	148	0	.	227
ANKRD13B	124930	hgsc.bcm.edu	37	17	27920706	27920706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANKRD13B	NM_152345	exon1	c.T67C	p.W23R	.	.	97	4	95	0	.	90
ANKRD17	26057	hgsc.bcm.edu;bcgsc.ca	37	4	74005966	74005966	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANKRD17	NM_032217	exon15	c.A2367G	p.P789P	.	.	84	4	89	0	.	234
ANKRD19P	138649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95584516	95584516	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	83	16	99	0	.	.
ANKRD30B	374860	broad.mit.edu	37	18	14791440	14791440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANKRD30B	NM_001145029	exon16	c.C1775A	p.P592H	.	.	924	13	1074	4	.	24
ANKRD61	100310846	bcgsc.ca	37	7	6075649	6075649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001271700	exon3	c.C889A	p.L297M	.	.	75	4	77	1	.	.
ANKS4B	257629	bcgsc.ca	37	16	21261886	21261886	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANKS4B	NM_145865	exon2	c.C999T	p.D333D	.	.	187	7	286	0	.	92
ANO10	55129	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	43621859	43621859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO10	NM_018075	exon5	c.A578G	p.K193R	.	.	30	4	38	0	.	92
ANO4	121601	bcgsc.ca	37	12	101504301	101504301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO4	NM_178826	exon22	c.A2164G	p.R722G	.	.	193	6	245	2	.	96
ANO6	196527	bcgsc.ca	37	12	45742054	45742054	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO6	NM_001204803	exon6	c.G652C	p.V218L	.	.	202	10	269	0	.	516
ANO6	196527	bcgsc.ca	37	12	45742056	45742056	+	Silent	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO6	NM_001204803	exon6	c.T654G	p.V218V	.	.	199	10	266	0	.	516
ANO6	196527	hgsc.bcm.edu;bcgsc.ca	37	12	45742051	45742051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO6	NM_001204803	exon6	c.A649T	p.I217L	.	.	213	16	275	0	.	516
ANXA10	11199	hgsc.bcm.edu	37	4	169060641	169060641	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANXA10	NM_007193	exon3	c.T105C	p.C35C	.	.	100	4	146	0	.	90
ANXA5	308	hgsc.bcm.edu;bcgsc.ca	37	4	122607464	122607464	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANXA5	NM_001154	exon3	c.C73A	p.R25R	.	.	80	4	124	0	.	91
AP1G1	164	bcgsc.ca	37	16	71823247	71823247	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AP1G1	NM_001030007	exon2	c.C136A	p.R46R	.	.	266	8	244	1	.	92
AP1G2	8906	bcgsc.ca	37	14	24033256	24033256	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AP1G2	NM_003917	exon11	c.C1090A	p.R364R	.	.	34	3	65	0	.	45
APAF1	317	hgsc.bcm.edu	37	12	99056270	99056270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APAF1	NM_181868	exon6	c.G747T	p.W249C	.	.	122	5	173	0	.	229
APBB1IP	54518	hgsc.bcm.edu	37	10	26825148	26825148	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APBB1IP	NM_019043	exon10	c.1044+2T>C	.	.	.	80	4	73	0	.	652
APCDD1	147495	ucsc.edu	37	18	10471827	10471827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APCDD1	NM_153000	exon3	c.G543T	p.W181C	.	.	43	4	75	0	.	90
APCS	325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	159558025	159558025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APCS	NM_001639	exon2	c.A199T	p.S67C	.	.	178	13	90	0	.	154
AQR	9716	hgsc.bcm.edu	37	15	35182513	35182513	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AQR	NM_014691	exon24	c.T2584C	p.L862L	.	.	97	4	147	0	.	135
AQR	9716	hgsc.bcm.edu	37	15	35212582	35212582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AQR	NM_014691	exon14	c.C1172A	p.P391H	.	.	89	4	92	0	.	135
ARHGAP11A	9824	bcgsc.ca	37	15	32929220	32929220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARHGAP11A	NM_014783	exon12	c.C2246A	p.P749Q	.	.	101	4	103	0	.	292
ARHGAP23	57636	bcgsc.ca	37	17	36634087	36634087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARHGAP23	NM_001199417	exon12	c.A2386G	p.M796V	.	.	250	7	329	0	.	205
ARHGEF15	22899	hgsc.bcm.edu	37	17	8221748	8221748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARHGEF15	NM_025014	exon10	c.A1748G	p.N583S	.	.	56	5	105	0	.	230
ARHGEF26	26084	hgsc.bcm.edu	37	3	153840716	153840716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARHGEF26	NM_001251962	exon2	c.T935C	p.L312S	.	.	95	4	160	0	.	47
ARHGEF7	8874	bcgsc.ca	37	13	111862342	111862342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARHGEF7	NM_001113511	exon5	c.G524T	p.R175L	.	.	144	6	196	1	.	232
ARID1B	57492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	157502170	157502170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARID1B	NM_020732	exon12	c.A3203G	p.E1068G	.	.	38	4	73	0	.	154
ARIH1	25820	hgsc.bcm.edu	37	15	72767267	72767267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARIH1	NM_005744	exon1	c.A287G	p.E96G	.	.	79	4	86	0	.	226
ARL5B	221079	hgsc.bcm.edu;bcgsc.ca	37	10	18963040	18963040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARL5B	NM_178815	exon5	c.C467A	p.S156Y	.	.	64	4	85	0	.	228
ARNTL	406	hgsc.bcm.edu	37	11	13408153	13408153	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARNTL	NM_001030272	exon19	c.C1728A	p.P576P	.	.	72	4	103	0	.	90
ARPC1B	10095	hgsc.bcm.edu	37	7	98988562	98988562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARPC1B	NM_005720	exon6	c.A547G	p.T183A	.	.	70	4	36	0	.	90
ARPC5	10092	bcgsc.ca	37	1	183599704	183599704	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARPC5	NM_001270439	exon3	c.T294C	p.V98V	.	.	159	6	137	0	.	90
ARR3	407	hgsc.bcm.edu	37	X	69496000	69496000	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARR3	NM_004312	exon6	c.C214T	p.R72X	.	.	99	4	166	0	.	156
ARSK	153642	hgsc.bcm.edu	37	5	94939217	94939217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARSK	NM_198150	exon8	c.C1598A	p.P533Q	.	.	73	4	74	0	.	91
ASB10	136371	hgsc.bcm.edu	37	7	150878505	150878505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ASB10	NM_001142459	exon3	c.G625T	p.G209C	.	.	94	4	120	0	.	226
ASPHD2	57168	bcgsc.ca	37	22	26830204	26830204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ASPHD2	NM_020437	exon2	c.C623T	p.A208V	.	.	46	4	99	0	.	69
ASXL3	80816	hgsc.bcm.edu	37	18	31326158	31326158	+	Missense_Mutation	SNP	G	G	T	rs117661115	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ASXL3	NM_030632	exon12	c.G6346T	p.A2116S	.	.	96	4	114	0	G|0.998;A|0.002	49
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29192785	29192785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATAD5	NM_024857	exon11	c.T3200C	p.I1067T	.	.	229	68	279	0	.	93
ATF2	1386	bcgsc.ca	37	2	175945423	175945423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATF2	NM_001880	exon13	c.C1256A	p.P419H	.	.	79	4	51	1	.	586
ATG9A	79065	hgsc.bcm.edu	37	2	220089453	220089453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATG9A	NM_001077198	exon8	c.C640A	p.R214S	.	.	98	4	164	0	.	91
ATM	472	bcgsc.ca	37	11	108128312	108128312	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATM	NM_000051	exon15	c.T2355C	p.R785R	.	.	187	6	172	0	.	3419
ATP11A	23250	hgsc.bcm.edu;bcgsc.ca	37	13	113512575	113512575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP11A	NM_032189	exon22	c.T2638C	p.S880P	.	.	121	5	168	0	.	138
ATP11C	286410	broad.mit.edu	37	X	138878585	138878585	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP11C	NM_001010986	exon12	c.C1062T	p.F354F	.	.	566	9	778	3	.	198
ATP1A1	476	hgsc.bcm.edu	37	1	116942136	116942136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP1A1	NM_001160233	exon18	c.G2543T	p.R848L	.	.	92	4	116	0	.	91
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	12	90015326	90015326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP2B1	NM_001001323	exon9	c.G1587T	p.L529F	.	.	81	4	115	0	.	516
ATP4A	495	hgsc.bcm.edu	37	19	36051450	36051450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP4A	NM_000704	exon6	c.T602C	p.L201P	.	.	48	4	65	0	.	91
ATP6V1G2	534	broad.mit.edu	37	6	31513934	31513934	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP6V1G2	NM_130463	exon2	c.G135A	p.E45E	.	.	515	6	393	2	.	90
ATP6V1G2	534	hgsc.bcm.edu;bcgsc.ca	37	6	31513188	31513188	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP6V1G2	NM_130463	exon3	c.C354A	p.A118A	.	.	58	4	56	0	.	90
ATP7B	540	hgsc.bcm.edu	37	13	52539142	52539142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP7B	NM_000053	exon5	c.G1735A	p.V579I	.	.	88	4	108	0	.	92
ATPAF2	91647	hgsc.bcm.edu	37	17	17921898	17921898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATPAF2	NM_145691	exon8	c.A835G	p.S279G	.	.	86	4	120	0	.	90
ATXN2L	11273	bcgsc.ca	37	16	28836944	28836944	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATXN2L	NM_145714	exon3	c.337-1G>T	.	.	.	175	6	227	1	.	92
ATXN7L2	127002	hgsc.bcm.edu	37	1	110032963	110032963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATXN7L2	NM_153340	exon9	c.G1307T	p.C436F	.	.	70	4	75	0	.	92
ATXN7L3	56970	mdanderson.org	37	17	42272036	42272036	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATXN7L3	NM_020218	exon11	c.T765C	p.L255L	.	.	19	3	50	0	.	68
AZI2	64343	hgsc.bcm.edu	37	3	28368437	28368437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AZI2	NM_022461	exon7	c.A652G	p.N218D	.	.	92	4	105	0	.	92
B3GALNT1	8706	bcgsc.ca	37	3	160804047	160804047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	B3GALNT1	NM_001038628	exon8	c.G496A	p.V166I	.	.	129	5	117	0	.	91
B4GALNT1	2583	broad.mit.edu	37	12	58023965	58023965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	B4GALNT1	NM_001478	exon6	c.T682A	p.S228T	.	.	749	16	575	0	.	514
BACE1	23621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117161738	117161739	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BACE1	NM_012104	exon7	c.970_971insG	p.L324fs	.	.	72	21	148	0	.	91
BACH2	60468	hgsc.bcm.edu	37	6	90661010	90661010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BACH2	NM_021813	exon7	c.G815T	p.R272M	.	.	95	4	135	0	.	231
BAI1	575	hgsc.bcm.edu;bcgsc.ca	37	8	143603470	143603470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BAI1	NM_001702	exon20	c.G3169A	p.G1057S	.	.	57	4	64	0	.	1129
BAI3	577	hgsc.bcm.edu	37	6	69666002	69666002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BAI3	NM_001704	exon7	c.A1282G	p.T428A	.	.	70	4	93	0	.	1148
BBS1	582	hgsc.bcm.edu;bcgsc.ca	37	11	66283057	66283057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BBS1	NM_024649	exon5	c.G479T	p.R160L	.	.	195	8	132	0	.	91
BCKDHA	593	bcgsc.ca	37	19	41919966	41919966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BCKDHA	NM_000709	exon4	c.T388C	p.F130L	.	.	63	4	86	1	.	90
BCKDHA	593	hgsc.bcm.edu	37	19	41916689	41916689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BCKDHA	NM_000709	exon2	c.G256A	p.G86S	.	.	95	4	117	0	.	90
BCKDK	10295	hgsc.bcm.edu	37	16	31123498	31123498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BCKDK	NM_005881	exon12	c.T1151C	p.L384P	.	.	90	4	90	0	.	765
BCOR	54880	hgsc.bcm.edu	37	X	39934379	39934379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BCOR	NM_001123385	exon4	c.C220A	p.R74S	.	.	91	6	98	0	.	229
BEND3	57673	hgsc.bcm.edu	37	6	107390471	107390471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BEND3	NM_001080450	exon5	c.C1924A	p.R642S	.	.	77	4	94	0	.	71
BHLHB9	80823	hgsc.bcm.edu	37	X	102004395	102004395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BHLHB9	NM_001142530	exon2	c.G472T	p.D158Y	.	.	110	5	145	0	.	132
BIRC2	329	hgsc.bcm.edu	37	11	102221307	102221307	+	Missense_Mutation	SNP	G	G	T	rs144530384	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BIRC2	NM_001256163	exon2	c.G722T	p.R241L	.	.	83	4	82	0	G|1.000;A|0.000	660
BIRC6	57448	hgsc.bcm.edu;bcgsc.ca	37	2	32678911	32678911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BIRC6	NM_016252	exon23	c.G4654T	p.G1552C	.	.	152	8	176	0	.	233
BMX	660	hgsc.bcm.edu;bcgsc.ca	37	X	15534284	15534284	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BMX	NM_001721	exon5	c.C375T	p.F125F	.	.	89	4	177	0	.	541
BNC2	54796	hgsc.bcm.edu	37	9	16552604	16552604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BNC2	NM_017637	exon5	c.A593G	p.K198R	.	.	77	5	164	0	.	92
BOC	91653	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	112987288	112987288	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BOC	NM_033254	exon5	c.C519T	p.S173S	.	.	68	16	65	0	.	157
BOD1L1	259282	hgsc.bcm.edu	37	4	13603749	13603749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_148894	exon10	c.G4775A	p.G1592D	.	.	95	4	123	0	.	.
BOLL	66037	broad.mit.edu	37	2	198622119	198622119	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BOLL	NM_197970	exon8	c.C594T	p.T198T	.	.	451	9	329	0	.	92
BPIFA3	128861	bcgsc.ca	37	20	31814219	31814219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_178466	exon5	c.C544T	p.P182S	.	.	198	6	297	0	.	.
BPIFB1	92747	hgsc.bcm.edu	37	20	31889200	31889200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_033197	exon9	c.G909A	p.M303I	.	.	58	4	75	0	.	.
BRAF	673	bcgsc.ca	37	7	140476849	140476849	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BRAF	NM_004333	exon13	c.T1557C	p.Y519Y	.	.	155	5	180	0	.	92146
BRCA1	672	bcgsc.ca	37	17	41245811	41245811	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BRCA1	NM_007300	exon10	c.T1737C	p.A579A	.	.	294	7	398	0	.	3415
BTBD16	118663	hgsc.bcm.edu	37	10	124096039	124096039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BTBD16	NM_144587	exon15	c.T1294C	p.S432P	.	.	93	4	121	0	.	91
BUB1B	701	broad.mit.edu;bcgsc.ca	37	15	40504815	40504815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BUB1B	NM_001211	exon19	c.T2501C	p.V834A	.	.	177	7	204	0	.	1509
C10orf12	26148	bcgsc.ca	37	10	98744557	98744557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C10orf12	NM_015652	exon1	c.C3410A	p.P1137H	.	.	155	6	142	0	.	92
C10orf71	118461	hgsc.bcm.edu	37	10	50532329	50532329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C10orf71	NM_001135196	exon3	c.C1739T	p.P580L	.	.	86	4	133	0	.	90
C11orf58	10944	hgsc.bcm.edu	37	11	16774369	16774369	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf58	NM_014267	exon4	c.T246C	p.S82S	.	.	98	5	145	0	.	22
C11orf63	79864	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	122830087	122830087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf63	NM_024806	exon9	c.A2271G	p.I757M	.	.	135	11	231	1	.	93
C11orf88	399949	hgsc.bcm.edu;bcgsc.ca	37	11	111385715	111385715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf88	NM_001100388	exon1	c.C206A	p.P69H	.	.	65	5	74	0	.	226
C11orf94	143678	hgsc.bcm.edu;bcgsc.ca	37	11	45928125	45928125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001080446	exon3	c.C292A	p.L98I	.	.	82	4	87	0	.	.
C14orf2	9556	hgsc.bcm.edu	37	14	104379023	104379023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C14orf2	NM_001127393	exon5	c.C208T	p.P70S	.	.	66	4	72	0	.	90
C15orf54	400360	bcgsc.ca	37	15	39544440	39544440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C15orf54	NM_207445	exon2	c.T104C	p.L35S	.	.	194	6	260	0	.	492
C16orf80	29105	hgsc.bcm.edu	37	16	58150036	58150036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C16orf80	NM_013242	exon3	c.C185A	p.P62H	.	.	96	4	170	0	.	226
C17orf70	80233	hgsc.bcm.edu	37	17	79514378	79514378	+	Missense_Mutation	SNP	C	C	A	rs72854496	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C17orf70	NM_025161	exon5	c.G1730T	p.R577L	.	.	45	4	42	0	C|1.000;T|0.000	92
C1orf63	57035	bcgsc.ca	37	1	25573301	25573301	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C1orf63	NM_020317	exon2	c.C154A	p.R52R	.	.	178	6	217	0	.	91
C1R	715	bcgsc.ca	37	12	7244231	7244231	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	113	5	119	2	.	.
C20orf141	128653	hgsc.bcm.edu	37	20	2796266	2796266	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C20orf141	NM_080739	exon2	c.G343T	p.E115X	.	.	90	4	120	0	.	90
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20055874	20055874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C20orf26	NM_015585	exon5	c.T413C	p.L138P	.	.	140	42	218	0	.	94
C2CD3	26005	hgsc.bcm.edu	37	11	73796884	73796884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2CD3	NM_015531	exon21	c.G3689T	p.G1230V	.	.	116	5	178	0	.	75
C2orf44	80304	hgsc.bcm.edu;bcgsc.ca	37	2	24261602	24261602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2orf44	NM_025203	exon2	c.G763T	p.G255C	.	.	112	5	121	0	.	154
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219222293	219222293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2orf62	NM_198559	exon3	c.C155T	p.T52M	.	.	109	13	111	0	.	68
C3P1	388503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10157854	10157854	+	RNA	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C3P1	.	.	.	.	.	.	205	47	184	0	.	90
C5orf52	100190949	hgsc.bcm.edu	37	5	157102111	157102111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001145132	exon2	c.C224A	p.S75Y	.	.	90	4	157	0	.	.
C7orf43	55262	hgsc.bcm.edu	37	7	99754538	99754538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C7orf43	NM_018275	exon6	c.A923G	p.N308S	.	.	58	4	53	0	.	90
C8B	732	hgsc.bcm.edu	37	1	57399139	57399139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C8B	NM_000066	exon10	c.T1421C	p.V474A	.	.	88	5	100	0	.	92
C9orf117	286207	hgsc.bcm.edu	37	9	130473684	130473684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C9orf117	NM_001012502	exon4	c.T764C	p.L255P	.	.	70	4	121	0	.	90
C9orf156	51531	hgsc.bcm.edu	37	9	100667081	100667081	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C9orf156	NM_016481	exon5	c.C1260A	p.I420I	.	.	106	6	122	0	.	90
C9orf171	389799	hgsc.bcm.edu	37	9	135447860	135447860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	C9orf171,NS,carcinoma,+1	C9orf171	NM_207417	exon7	c.A926G	p.Q309R	.	.	43	3	85	2	.	157
C9orf84	158401	hgsc.bcm.edu	37	9	114480520	114480520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C9orf84	NM_173521	exon14	c.A1988G	p.H663R	.	.	80	4	133	0	.	92
CA5B	11238	hgsc.bcm.edu	37	X	15768181	15768181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CA5B	NM_007220	exon2	c.A35G	p.Q12R	.	.	87	3	169	0	.	130
CACFD1	11094	hgsc.bcm.edu	37	9	136328625	136328625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001242370	exon2	c.T142C	p.F48L	.	.	93	4	119	0	.	.
CACNA1D	776	hgsc.bcm.edu	37	3	53815596	53815596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNA1D	NM_000720	exon40	c.A4754G	p.N1585S	.	.	117	5	176	0	.	100
CACNA1E	777	hgsc.bcm.edu	37	1	181684513	181684513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNA1E	NM_001205293	exon9	c.C1211T	p.T404I	.	.	95	4	67	0	.	95
CACNA1H	8912	hgsc.bcm.edu	37	16	1261545	1261545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNA1H	NM_021098	exon23	c.A4415G	p.Q1472R	.	.	89	4	137	0	.	67
CACNA1H	8912	hgsc.bcm.edu	37	16	1270004	1270004	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNA1H	NM_021098	exon35	c.G6072A	p.L2024L	.	.	99	4	118	0	.	67
CACNB3	784	hgsc.bcm.edu	37	12	49221409	49221409	+	Silent	SNP	C	C	T	rs191174951	by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNB3	NM_000725	exon13	c.C1182T	p.P394P	.	.	51	4	91	0	C|0.999;A|0.000	90
CAD	790	hgsc.bcm.edu	37	2	27465209	27465209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAD	NM_004341	exon40	c.G6136T	p.G2046W	.	.	60	4	91	0	.	295
CADM1	23705	hgsc.bcm.edu;bcgsc.ca	37	11	115109361	115109361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CADM1	NM_014333	exon3	c.A283G	p.S95G	.	.	86	4	129	0	.	92
CAMK2G	818	hgsc.bcm.edu	37	10	75602229	75602229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAMK2G	NM_172169	exon11	c.G890T	p.R297L	.	.	91	5	110	0	.	358
CAMKK2	10645	hgsc.bcm.edu;bcgsc.ca	37	12	121701741	121701741	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAMKK2	NM_153500	exon6	c.T627C	p.R209R	.	.	76	4	62	0	.	450
CAMSAP2	23271	hgsc.bcm.edu	37	1	200817629	200817629	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_203459	exon11	c.T1732C	p.L578L	.	.	100	4	103	0	.	.
CAMSAP2	23271	hgsc.bcm.edu;bcgsc.ca	37	1	200708967	200708967	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_203459	exon1	c.T12C	p.A4A	.	.	184	8	175	0	.	.
CAPS2	84698	hgsc.bcm.edu;bcgsc.ca	37	12	75683540	75683540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAPS2	NM_032606	exon15	c.A1313G	p.K438R	.	.	98	4	107	0	.	92
CARNS1	57571	bcgsc.ca	37	11	67186698	67186698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CARNS1	NM_001166222	exon5	c.T836C	p.L279P	.	.	45	4	44	0	.	46
CARTPT	9607	hgsc.bcm.edu	37	5	71015234	71015234	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CARTPT	NM_004291	exon1	c.G114T	p.L38L	.	.	95	4	104	0	.	91
CASP8AP2	9994	hgsc.bcm.edu	37	6	90577355	90577355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CASP8AP2	NM_001137667	exon8	c.C4346T	p.P1449L	.	.	79	4	105	0	.	24
CBR4	84869	hgsc.bcm.edu	37	4	169931172	169931172	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBR4	NM_032783	exon1	c.C69A	p.A23A	.	.	93	4	116	0	.	90
CBS	875	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	44488625	44488625	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBS	NM_000071	exon4	c.G310T	p.E104X	.	.	150	54	226	1	.	90
CBX3	11335	hgsc.bcm.edu	37	7	26248156	26248156	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBX3	NM_016587	exon4	c.C311A	p.S104X	.	.	116	5	139	0	.	227
CBX7	23492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	39530449	39530449	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBX7	NM_175709	exon5	c.G555A	p.A185A	.	.	56	20	88	0	.	227
CCDC112	153733	broad.mit.edu	37	5	114607026	114607026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC112	NM_001040440	exon7	c.C1216A	p.Q406K	.	.	348	8	408	1	.	90
CCDC116	164592	hgsc.bcm.edu	37	22	21989356	21989356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC116	NM_152612	exon4	c.T1004C	p.L335P	.	.	60	6	103	0	.	92
CCDC13	152206	hgsc.bcm.edu	37	3	42754719	42754719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC13	NM_144719	exon14	c.A1808G	p.E603G	.	.	80	5	122	0	.	91
CCDC14	64770	hgsc.bcm.edu	37	3	123634090	123634090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC14	NM_022757	exon12	c.C2275A	p.Q759K	.	.	76	4	109	0	.	68
CCDC146	57639	ucsc.edu	37	7	76891617	76891617	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC146	NM_020879	exon9	c.T1166A	p.L389Q	.	.	40	4	84	1	.	70
CCDC164	92749	hgsc.bcm.edu;bcgsc.ca	37	2	26624926	26624926	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC164	NM_145038	exon1	c.C69T	p.L23L	.	.	64	4	122	0	.	92
CCDC18	343099	hgsc.bcm.edu	37	1	93677670	93677670	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC18	NM_206886	exon11	c.A1347G	p.A449A	.	.	98	4	142	0	.	138
CCDC22	28952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49105132	49105132	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC22	NM_014008	exon12	c.G1368T	p.L456L	.	.	174	35	260	0	.	130
CCDC61	729440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46498359	46498359	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC61	.	.	.	.	.	.	59	11	86	0	.	23
CCDC64B	146439	hgsc.bcm.edu	37	16	3078749	3078749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001103175	exon7	c.G1190T	p.G397V	.	.	118	6	143	0	.	.
CCL15	6359	ucsc.edu;bcgsc.ca	37	17	34325404	34325404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCL15	NM_032965	exon3	c.T160C	p.C54R	.	.	41	4	51	0	.	91
CCNB1IP1	57820	ucsc.edu;bcgsc.ca	37	14	20784551	20784551	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCNB1IP1	NM_182852	exon6	c.A132G	p.S44S	.	.	43	4	76	1	.	659
CCPG1	9236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55664085	55664085	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCPG1	NM_020739	exon6	c.G612A	p.K204K	.	.	204	34	271	0	.	91
CCR9	10803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45942794	45942794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCR9	NM_031200	exon3	c.A514G	p.I172V	.	.	72	20	106	0	.	660
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156280946	156280946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCT3	NM_005998	exon12	c.G1196A	p.R399H	.	.	157	23	141	0	.	92
CD163	9332	bcgsc.ca	37	12	7655128	7655128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD163	NM_203416	exon2	c.T79C	p.F27L	.	.	236	6	227	0	.	98
CD177	57126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43858024	43858024	+	RNA	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD177	.	.	.	.	.	.	99	28	146	1	.	22
CD22	933	hgsc.bcm.edu	37	19	35832318	35832318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD22	NM_001185100	exon8	c.T1580C	p.L527P	.	.	64	4	33	0	.	526
CD300C	10871	hgsc.bcm.edu;bcgsc.ca	37	17	72537867	72537867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD300C	NM_006678	exon4	c.T536C	p.F179S	.	.	55	4	76	0	.	90
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41924620	41924620	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD300LG	NM_001168323	exon1	c.G36A	p.L12L	.	.	94	22	106	0	.	90
CD320	51293	hgsc.bcm.edu	37	19	8370014	8370014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD320	NM_016579	exon2	c.A169T	p.T57S	.	.	75	4	67	0	.	90
CD48	962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160648872	160648872	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD48	NM_001778	exon4	c.G702A	p.V234V	.	.	136	44	134	0	.	90
CD97	976	ucsc.edu;bcgsc.ca	37	19	14512305	14512305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD97	NM_078481	exon10	c.A1005G	p.E335E	.	.	28	4	53	0	.	570
CDC16	8881	hgsc.bcm.edu	37	13	115002339	115002339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDC16	NM_003903	exon3	c.G169T	p.A57S	.	.	90	4	116	0	.	226
CDC42BPG	55561	hgsc.bcm.edu	37	11	64599915	64599915	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDC42BPG	NM_017525	exon27	c.G3072A	p.L1024L	.	.	75	4	120	0	.	528
CDH20	28316	bcgsc.ca	37	18	59212303	59212303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDH20	NM_031891	exon9	c.A1574G	p.N525S	.	.	64	4	96	0	.	155
CDH2	1000	hgsc.bcm.edu	37	18	25589802	25589802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDH2	NM_001792	exon5	c.G581T	p.R194L	.	.	61	4	85	0	.	525
CDHR2	54825	hgsc.bcm.edu	37	5	175995734	175995734	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDHR2	NM_017675	exon4	c.T180C	p.Y60Y	.	.	98	4	121	0	.	70
CDK6	1021	hgsc.bcm.edu	37	7	92300836	92300836	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDK6	NM_001259	exon5	c.G551A	p.W184X	.	.	137	6	92	0	.	1402
CEACAM1	634	bcgsc.ca	37	19	43032487	43032487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEACAM1	NM_001184816	exon1	c.C40T	p.P14S	.	.	73	4	107	0	.	515
CENPC1	1060	bcgsc.ca	37	4	68374776	68374776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CENPC1	NM_001812	exon10	c.C1660A	p.H554N	.	.	171	6	195	2	.	205
CEP128	145508	hgsc.bcm.edu;bcgsc.ca	37	14	80971326	80971326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP128	NM_152446	exon23	c.G3110T	p.G1037V	.	.	61	4	78	0	.	91
CEP152	22995	bcgsc.ca	37	15	49031121	49031121	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP152	NM_001194998	exon27	c.T4458C	p.G1486G	.	.	201	6	265	0	.	70
CEP63	80254	hgsc.bcm.edu;bcgsc.ca	37	3	134264444	134264444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP63	NM_001042383	exon7	c.G572T	p.R191L	.	.	78	4	105	0	.	493
CEP72	55722	bcgsc.ca	37	5	637890	637890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP72	NM_018140	exon7	c.A1163G	p.E388G	.	.	55	4	52	0	.	69
CERS3	204219	bcgsc.ca	37	15	101013199	101013199	+	Missense_Mutation	SNP	C	C	A	rs140343630		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_178842	exon10	c.G668T	p.W223L	.	.	95	5	110	1	C|1.000;A|0.000	.
CES1P2	0	bcgsc.ca	37	16	55762173	55762173	+	RNA	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	75	4	127	0	.	.
CHAT	1103	hgsc.bcm.edu	37	10	50833615	50833615	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHAT	NM_020549	exon6	c.C849A	p.P283P	.	.	71	4	108	0	.	514
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61765595	61765595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHD7	NM_017780	exon31	c.C6311T	p.A2104V	.	.	220	95	241	1	.	141
CHEK1	1111	broad.mit.edu;bcgsc.ca	37	11	125503100	125503100	+	Missense_Mutation	SNP	G	G	T	rs3731410	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHEK1	NM_001244846	exon6	c.G467T	p.R156L	.	.	326	9	239	0	G|0.997;A|0.003	1509
CHI3L2	1117	hgsc.bcm.edu;bcgsc.ca	37	1	111773369	111773369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHI3L2	NM_004000	exon3	c.G76A	p.A26T	.	.	60	4	77	0	.	514
CHIA	27159	hgsc.bcm.edu	37	1	111857977	111857977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHIA	NM_201653	exon6	c.G400T	p.G134W	.	.	91	4	133	0	.	91
CHRNA2	1135	hgsc.bcm.edu	37	8	27320754	27320754	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHRNA2	NM_000742	exon6	c.C1206T	p.H402H	.	.	37	4	79	0	.	91
CHST3	9469	mdanderson.org	37	10	73767186	73767186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHST3	NM_004273	exon3	c.C397T	p.R133C	.	.	10	2	19	0	.	90
CHST7	56548	hgsc.bcm.edu;bcgsc.ca	37	X	46433646	46433646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHST7	NM_019886	exon1	c.G280T	p.G94W	.	.	62	5	100	0	.	133
CHUK	1147	hgsc.bcm.edu	37	10	101964400	101964400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHUK	NM_001278	exon13	c.G1370T	p.R457I	.	.	115	5	104	0	.	961
CIT	11113	hgsc.bcm.edu	37	12	120151337	120151337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CIT	NM_001206999	exon34	c.C4423A	p.P1475T	.	.	119	5	149	0	.	399
CLIC1	1192	hgsc.bcm.edu	37	6	31698776	31698776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CLIC1	NM_001288	exon6	c.T569C	p.V190A	.	.	123	5	96	0	.	515
CLK2P	1197	bcgsc.ca	37	7	23625803	23625803	+	RNA	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	51	4	35	0	.	.
CLPTM1	1209	hgsc.bcm.edu	37	19	45489769	45489769	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CLPTM1	NM_001294	exon7	c.C729A	p.T243T	.	.	72	4	93	0	.	91
CLSTN2	64084	hgsc.bcm.edu;bcgsc.ca	37	3	140251313	140251313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CLSTN2	NM_022131	exon9	c.G1492T	p.G498C	.	.	91	5	122	0	.	157
CLUH	23277	hgsc.bcm.edu	37	17	2599486	2599486	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_015229	exon13	c.T2241C	p.A747A	.	.	99	6	158	0	.	.
CMIP	80790	hgsc.bcm.edu	37	16	81654516	81654516	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_198390	exon3	c.T462C	p.H154H	.	.	98	4	125	0	.	.
CMYA5	202333	hgsc.bcm.edu	37	5	79034137	79034137	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CMYA5	NM_153610	exon2	c.G9549T	p.L3183L	.	.	86	4	111	0	.	77
CNGA2	1260	bcgsc.ca	37	X	150908046	150908046	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNGA2	NM_005140	exon4	c.G216A	p.L72L	.	.	85	4	175	0	.	193
CNST	163882	hgsc.bcm.edu;bcgsc.ca	37	1	246784775	246784775	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNST	NM_152609	exon3	c.C424T	p.L142L	.	.	92	4	68	0	.	90
CNTD1	124817	hgsc.bcm.edu	37	17	40959859	40959859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNTD1	NM_173478	exon6	c.C799A	p.Q267K	.	.	86	5	110	0	.	90
CNTLN	54875	hgsc.bcm.edu;bcgsc.ca	37	9	17332673	17332673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNTLN	NM_017738	exon10	c.A1589G	p.K530R	.	.	137	6	244	0	.	91
CNTN5	53942	hgsc.bcm.edu	37	11	100141826	100141826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNTN5	NM_001243270	exon17	c.C2167T	p.P723S	.	.	70	4	89	0	.	366
COG3	83548	hgsc.bcm.edu	37	13	46085936	46085936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COG3	NM_031431	exon16	c.T1756C	p.S586P	.	.	91	5	105	0	.	154
COL11A2	1302	bcgsc.ca	37	6	33137843	33137843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL11A2	NM_080680	exon49	c.T3617C	p.L1206P	.	.	80	4	90	1	.	95
COL14A1	7373	bcgsc.ca	37	8	121312983	121312983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL14A1	NM_021110	exon36	c.T4327C	p.S1443P	.	.	245	7	213	0	.	543
COL19A1	1310	bcgsc.ca	37	6	70886456	70886456	+	Silent	SNP	G	G	T	rs149084573	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL19A1	NM_001858	exon42	c.G2667T	p.S889S	.	.	205	6	283	0	G|1.000;A|0.000	156
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu	37	1	86340972	86340972	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL24A1	NM_152890	exon34	c.A3072G	p.E1024E	.	.	108	5	220	0	.	94
COL27A1	85301	hgsc.bcm.edu	37	9	117068856	117068856	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL27A1	NM_032888	exon58	c.C4995A	p.T1665T	.	.	84	4	77	0	.	94
COL4A1	1282	hgsc.bcm.edu;bcgsc.ca	37	13	110831299	110831299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL4A1	NM_001845	exon31	c.C2429A	p.P810H	.	.	52	4	69	0	.	654
COL4A2	1284	hgsc.bcm.edu;bcgsc.ca	37	13	111144454	111144454	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL4A2	NM_001846	exon38	c.A3492G	p.G1164G	.	.	57	4	84	0	.	95
COMMD10	51397	ucsc.edu	37	5	115428350	115428350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COMMD10	NM_016144	exon4	c.C352G	p.Q118E	.	.	161	1	168	0	.	91
CPN1	1369	hgsc.bcm.edu	37	10	101824984	101824984	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPN1	NM_001308	exon4	c.C720A	p.T240T	.	.	87	4	96	0	.	227
CPN2	1370	hgsc.bcm.edu	37	3	194062557	194062557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPN2	NM_001080513	exon2	c.T875C	p.V292A	.	.	97	4	146	0	.	73
CPS1	1373	bcgsc.ca	37	2	211456566	211456566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPS1	NM_001122633	exon11	c.A977G	p.Q326R	.	.	135	5	167	0	.	162
CPSF1	29894	hgsc.bcm.edu	37	8	145622853	145622853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPSF1	NM_013291	exon22	c.A2234G	p.E745G	.	.	78	4	70	0	.	91
CPSF4L	642843	hgsc.bcm.edu;bcgsc.ca	37	17	71257927	71257927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPSF4L	NM_001129885	exon1	c.T31C	p.F11L	.	.	62	4	95	0	.	68
CREB5	9586	hgsc.bcm.edu	37	7	28547292	28547292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CREB5	NM_182898	exon4	c.C228A	p.S76R	.	.	119	4	162	0	.	92
CREBBP	1387	hgsc.bcm.edu;bcgsc.ca	37	16	3778391	3778391	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CREBBP	NM_004380	exon31	c.C6657A	p.A2219A	.	.	76	5	82	0	.	1807
CROCC	9696	hgsc.bcm.edu	37	1	17265407	17265407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CROCC	NM_014675	exon12	c.G1378A	p.V460I	.	.	80	4	129	0	.	137
CRYBA1	1411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27580737	27580737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CRYBA1	NM_005208	exon5	c.C437T	p.P146L	.	.	162	27	123	0	.	90
CRYBA2	1412	hgsc.bcm.edu	37	2	219856962	219856962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CRYBA2	NM_057094	exon3	c.G165T	p.W55C	.	.	84	4	87	0	.	90
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2967694	2967694	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD1	NM_033225	exon43	c.T6594C	p.D2198D	.	.	52	4	72	0	.	86
CSMD2	114784	hgsc.bcm.edu	37	1	34033348	34033348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD2	NM_052896	exon54	c.C8156A	p.P2719H	.	.	125	5	142	0	.	103
CSMD2	114784	hgsc.bcm.edu	37	1	34089068	34089068	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD2	NM_052896	exon37	c.5506-2A>G	.	.	.	113	5	136	0	.	103
CSMD2	114784	ucsc.edu	37	1	34312593	34312593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD2	NM_052896	exon6	c.A805G	p.T269A	.	.	31	4	43	0	.	103
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39184971	39184971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSRNP1	NM_033027	exon5	c.T1345C	p.F449L	.	.	88	5	124	0	.	230
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39185786	39185786	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSRNP1	NM_033027	exon4	c.C622A	p.R208R	.	.	90	6	146	0	.	230
CST1	1469	bcgsc.ca	37	20	23731304	23731304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CST1	NM_001898	exon1	c.C200A	p.P67Q	.	.	153	6	235	1	.	91
CTAGE7P	119437	bcgsc.ca	37	10	131906349	131906349	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	69	4	73	0	.	.
CTC1	80169	hgsc.bcm.edu	37	17	8138160	8138160	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTC1	NM_025099	exon9	c.T1524C	p.A508A	.	.	130	6	208	0	.	93
CTNNA3	29119	bcgsc.ca	37	10	68940120	68940120	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTNNA3	NM_001127384	exon7	c.C1002A	p.A334A	.	.	130	5	199	1	.	234
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266882	41266882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTNNB1	NM_001098209	exon5	c.A553G	p.R185G	.	.	148	45	212	1	.	24361
CTNNB1	1499	hgsc.bcm.edu;bcgsc.ca	37	3	41275034	41275034	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTNNB1	NM_001098209	exon9	c.T1200C	p.G400G	.	.	97	5	107	0	.	24361
CTSA	5476	bcgsc.ca	37	20	44523488	44523488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTSA	NM_000308	exon10	c.A950G	p.Q317R	.	.	127	5	170	1	.	91
CTSL1P8	1518	bcgsc.ca	37	9	90462184	90462184	+	RNA	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	26	4	31	0	.	.
CUBN	8029	hgsc.bcm.edu	37	10	17127716	17127716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CUBN	NM_001081	exon16	c.T1990C	p.F664L	.	.	87	4	152	0	.	166
CUL3	8452	hgsc.bcm.edu	37	2	225376256	225376256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CUL3	NM_001257198	exon6	c.A716G	p.Y239C	.	.	118	5	110	0	.	229
CUL4A	8451	bcgsc.ca	37	13	113897404	113897404	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CUL4A	NM_001008895	exon11	c.C1158T	p.F386F	.	.	158	6	222	0	.	651
CUX1	1523	hgsc.bcm.edu	37	7	101840082	101840082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CUX1	NM_001202543	exon15	c.C1424A	p.S475Y	.	.	146	6	162	0	.	160
CWF19L2	143884	hgsc.bcm.edu	37	11	107263571	107263571	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CWF19L2	NM_152434	exon11	c.A1668G	p.R556R	.	.	86	4	108	0	.	68
CXorf22	170063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	35989740	35989740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CXorf22	NM_152632	exon12	c.T2008G	p.L670V	.	.	78	25	130	0	.	131
CYB561D2	11068	hgsc.bcm.edu	37	3	50390719	50390719	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYB561D2	NM_007022	exon4	c.T213C	p.S71S	.	.	91	4	86	0	.	278
CYBB	1536	hgsc.bcm.edu	37	X	37665717	37665717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYBB	NM_000397	exon11	c.G1392T	p.Q464H	.	.	72	4	103	0	.	130
CYP1A1	1543	hgsc.bcm.edu	37	15	75015213	75015213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYP1A1	NM_000499	exon2	c.A226G	p.I76V	.	.	99	5	142	0	.	156
CYP2A6	1548	bcgsc.ca	37	19	41352807	41352807	+	Silent	SNP	A	A	G	rs55805386	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYP2A6	NM_000762	exon5	c.T804C	p.I268I	.	.	449	45	505	57	A|0.991;G|0.009	92
CYP2C8	1558	bcgsc.ca	37	10	96802695	96802695	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYP2C8	NM_000770	exon7	c.C1101A	p.P367P	.	.	195	6	170	0	.	90
CYP4B1	1580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	47264911	47264911	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYP4B1	NM_000779	exon1	c.G158A	p.W53X	.	.	70	25	137	0	.	92
DAGLB	221955	hgsc.bcm.edu;bcgsc.ca	37	7	6474496	6474496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DAGLB	NM_139179	exon4	c.T575C	p.V192A	.	.	114	6	190	0	.	70
DAO	1610	hgsc.bcm.edu	37	12	109278816	109278816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DAO	NM_001917	exon2	c.G34T	p.G12W	.	.	86	4	54	0	.	92
DCAF5	8816	bcgsc.ca	37	14	69521251	69521251	+	Missense_Mutation	SNP	G	G	T	rs148942004		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DCAF5	NM_003861	exon9	c.C2152A	p.Q718K	.	.	132	5	147	0	G|1.000;T|0.000	91
DCHS1	8642	hgsc.bcm.edu	37	11	6653382	6653382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DCHS1	NM_003737	exon6	c.G3361A	p.G1121R	.	.	112	5	128	0	.	73
DDHD1	80821	bcgsc.ca	37	14	53570425	53570425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDHD1	NM_001160147	exon2	c.T988C	p.S330P	.	.	166	6	221	0	.	92
DDR2	4921	hgsc.bcm.edu	37	1	162743270	162743270	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDR2	NM_001014796	exon15	c.T1740C	p.C580C	.	.	117	5	112	0	.	1464
DDX17	10521	hgsc.bcm.edu;broad.mit.edu	37	22	38897259	38897259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDX17	NM_006386	exon2	c.T314C	p.L105P	.	.	73	4	63	0	.	229
DDX42	11325	hgsc.bcm.edu	37	17	61889542	61889542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDX42	NM_203499	exon14	c.C1649A	p.P550Q	.	.	100	4	170	0	.	230
DDX6	1656	bcgsc.ca	37	11	118630713	118630713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDX6	NM_004397	exon8	c.A782G	p.E261G	.	.	157	5	210	0	.	659
DEF6	50619	hgsc.bcm.edu	37	6	35288753	35288753	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DEF6	NM_022047	exon10	c.1672+2T>A	.	.	.	93	4	134	0	.	227
DEGS2	123099	hgsc.bcm.edu	37	14	100613207	100613207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DEGS2	NM_206918	exon3	c.C863A	p.P288Q	.	.	75	4	114	0	.	90
DENND2C	163259	bcgsc.ca	37	1	115168404	115168404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DENND2C	NM_001256404	exon4	c.A202G	p.S68G	.	.	391	9	532	0	.	229
DENND4B	9909	broad.mit.edu	37	1	153907324	153907324	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DENND4B	NM_014856	exon18	c.A2685G	p.Q895Q	.	.	197	11	101	1	.	69
DENND4B	9909	hgsc.bcm.edu	37	1	153903278	153903278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DENND4B	NM_014856	exon26	c.G4170T	p.L1390F	.	.	100	4	49	0	.	69
DENND5B	160518	ucsc.edu	37	12	31568308	31568308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DENND5B	NM_144973	exon12	c.G2545A	p.D849N	.	.	39	4	50	1	.	24
DEPDC5	9681	bcgsc.ca	37	22	32275652	32275652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DEPDC5	NM_001242896	exon38	c.T3947C	p.L1316P	.	.	46	4	66	1	.	519
DGCR14	8220	hgsc.bcm.edu;bcgsc.ca	37	22	19126802	19126802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DGCR14	NM_022719	exon6	c.T692C	p.V231A	.	.	78	4	61	0	.	116
DHFRL1	200895	hgsc.bcm.edu	37	3	93779792	93779792	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DHFRL1	NM_001195643	exon2	c.A564G	p.X188X	.	.	125	5	122	0	.	90
DHPS	1725	bcgsc.ca	37	19	12790986	12790986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DHPS	NM_001930	exon2	c.C361A	p.Q121K	.	.	157	6	190	0	.	90
DIAPH1	1729	hgsc.bcm.edu	37	5	140953135	140953135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DIAPH1	NM_005219	exon16	c.C2282A	p.P761Q	.	.	94	5	133	0	.	91
DIRAS3	9077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68512864	68512864	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DIRAS3	NM_004675	exon2	c.C117T	p.R39R	.	.	106	30	147	0	.	848
DIS3L2	129563	hgsc.bcm.edu	37	2	232880358	232880358	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DIS3L2	NM_001257282	exon3	c.T187C	p.L63L	.	.	102	5	128	0	.	136
DKK3	27122	hgsc.bcm.edu;bcgsc.ca	37	11	11988502	11988502	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DKK3	NM_015881	exon6	c.A672G	p.R224R	.	.	129	6	232	0	.	721
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32490308	32490308	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DMD	NM_004006	exon22	c.C2922A	p.I974I	.	.	156	45	216	0	.	265
DMTF1	9988	bcgsc.ca	37	7	86823158	86823158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DMTF1	NM_001142327	exon16	c.A1768G	p.T590A	.	.	143	5	175	0	.	91
DMXL2	23312	bcgsc.ca	37	15	51837885	51837885	+	Silent	SNP	T	T	C	rs138021456		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DMXL2	NM_001174117	exon8	c.A825G	p.E275E	.	.	211	6	255	1	T|1.000;C|0.000	99
DNAH10	196385	bcgsc.ca	37	12	124341688	124341688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH10	NM_207437	exon36	c.C6170T	p.S2057L	.	.	94	5	124	0	.	95
DNAH12	201625	broad.mit.edu;bcgsc.ca	37	3	57496589	57496589	+	Missense_Mutation	SNP	T	T	C	rs201184189		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH12	NM_198564	exon5	c.A397G	p.R133G	.	.	197	6	259	0	T|0.999;C|0.000	47
DNAH14	127602	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225440023	225440023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH14	NM_001373	exon44	c.G6751A	p.E2251K	.	.	460	209	485	2	.	23
DNAH6	1768	hgsc.bcm.edu	37	2	84822786	84822786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH6	NM_001370	exon18	c.T2741C	p.L914P	.	.	93	4	54	0	.	69
DNAH6	1768	hgsc.bcm.edu;bcgsc.ca	37	2	84955003	84955003	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH6	NM_001370	exon61	c.C10183A	p.R3395R	.	.	91	4	103	0	.	69
DNAH9	1770	bcgsc.ca	37	17	11660879	11660879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH9	NM_001372	exon35	c.C6865A	p.P2289T	.	.	148	5	135	0	.	168
DNAJA3	9093	hgsc.bcm.edu	37	16	4500484	4500484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAJA3	NM_001135110	exon10	c.C1325T	p.T442I	.	.	66	4	72	0	.	291
DNAJB11	51726	bcgsc.ca	37	3	186289954	186289954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAJB11	NM_016306	exon2	c.A139G	p.K47E	.	.	92	5	124	1	.	227
DNAJC13	23317	hgsc.bcm.edu	37	3	132193831	132193831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAJC13	NM_015268	exon22	c.G2347T	p.E783X	.	.	86	4	102	0	.	272
DNAJC14	85406	hgsc.bcm.edu	37	12	56221087	56221087	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAJC14	NM_032364	exon2	c.C1356A	p.A452A	.	.	83	4	111	0	.	229
DNMT3B	1789	hgsc.bcm.edu	37	20	31367950	31367950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNMT3B	NM_175850	exon1	c.T29C	p.L10S	.	.	66	4	84	0	.	660
DOC2A	8448	hgsc.bcm.edu;bcgsc.ca	37	16	30020840	30020840	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOC2A	NM_003586	exon3	c.C301A	p.R101R	.	.	57	4	58	0	.	92
DOCK10	55619	hgsc.bcm.edu	37	2	225751231	225751231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK10	NM_014689	exon5	c.A434G	p.E145G	.	.	73	4	95	0	.	92
DOCK10	55619	hgsc.bcm.edu	37	2	225796364	225796364	+	Nonsense_Mutation	SNP	C	C	A	rs186136248	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK10	NM_014689	exon2	c.G145T	p.E49X	.	.	50	4	81	0	C|0.999;T|0.001	92
DOCK11	139818	bcgsc.ca	37	X	117676894	117676894	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK11	NM_144658	exon3	c.G225T	p.S75S	.	.	151	6	222	0	.	93
DOCK3	1795	hgsc.bcm.edu	37	3	51376393	51376393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK3	NM_004947	exon37	c.G3700A	p.E1234K	.	.	98	4	108	0	.	22
DOCK9	23348	hgsc.bcm.edu	37	13	99536145	99536145	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK9	NM_001130049	exon22	c.T2394C	p.G798G	.	.	72	4	73	0	.	90
DOPEY1	23033	bcgsc.ca	37	6	83819910	83819910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOPEY1	NM_015018	exon6	c.G558T	p.W186C	.	.	221	6	256	1	.	155
DPCR1	135656	broad.mit.edu	37	6	30918278	30918278	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPCR1	NM_080870	exon2	c.T2037C	p.P679P	.	.	594	6	611	0	.	90
DPP9	91039	hgsc.bcm.edu	37	19	4700261	4700261	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPP9	NM_139159	exon10	c.A1041G	p.K347K	.	.	94	5	87	0	.	91
DPT	1805	hgsc.bcm.edu	37	1	168670334	168670334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPT	NM_001937	exon3	c.G460T	p.G154C	.	.	94	5	98	0	.	187
DPY19L3	147991	hgsc.bcm.edu	37	19	32968497	32968497	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPY19L3	NM_001172774	exon17	c.G1767T	p.T589T	.	.	80	5	120	0	.	72
DPYSL2	1808	hgsc.bcm.edu	37	8	26439530	26439530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPYSL2	NM_001197293	exon2	c.C400A	p.Q134K	.	.	85	4	126	0	.	153
DRP2	1821	hgsc.bcm.edu	37	X	100513518	100513518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DRP2	NM_001939	exon22	c.A2611G	p.R871G	.	.	97	4	92	0	.	132
DSCAML1	57453	hgsc.bcm.edu	37	11	117392100	117392100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DSCAML1	NM_020693	exon6	c.A1138T	p.T380S	.	.	80	4	109	0	.	159
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117374691	117374691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DSCAML1	NM_020693	exon11	c.G2408A	p.R803H	.	.	134	40	194	0	.	159
DSE	29940	mdanderson.org	37	6	116757309	116757309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DSE	NM_001080976	exon6	c.C1678A	p.L560I	.	.	25	3	37	0	.	91
DST	667	hgsc.bcm.edu	37	6	56376052	56376052	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon54	c.A10854G	p.K3618K	.	.	132	6	164	0	.	523
DST	667	hgsc.bcm.edu;bcgsc.ca	37	6	56350122	56350122	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon69	c.C13326A	p.I4442I	.	.	106	5	150	0	.	523
DST	667	hgsc.bcm.edu;bcgsc.ca	37	6	56365936	56365936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon61	c.A11969G	p.E3990G	.	.	77	5	103	0	.	523
DVL1	1855	bcgsc.ca	37	1	1275868	1275868	+	Silent	SNP	C	C	A	rs112329571	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL1	NM_004421	exon6	c.G621T	p.T207T	.	.	126	5	175	1	C|1.000;T|0.000	658
DVL2	1856	hgsc.bcm.edu;bcgsc.ca	37	17	7132581	7132581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL2	NM_004422	exon8	c.T830C	p.F277S	.	.	79	4	115	0	.	659
DVL2	1856	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7133190	7133190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL2	NM_004422	exon5	c.T593C	p.L198P	.	.	50	4	93	0	.	659
DYNC1H1	1778	bcgsc.ca	37	14	102476663	102476663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1H1	NM_001376	exon31	c.G6272T	p.R2091L	.	.	183	6	232	0	.	98
DYNC1H1	1778	hgsc.bcm.edu	37	14	102446804	102446804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1H1	NM_001376	exon5	c.A878G	p.E293G	.	.	102	6	113	0	.	98
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102494143	102494143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1H1	NM_001376	exon47	c.C9236A	p.A3079E	.	.	59	14	88	0	.	98
DYNC1LI2	1783	hgsc.bcm.edu	37	16	66764024	66764024	+	Silent	SNP	G	G	T	rs145562779	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1LI2	NM_006141	exon8	c.C1032A	p.P344P	.	.	79	4	105	0	G|1.000;A|0.000	93
DYRK3	8444	hgsc.bcm.edu	37	1	206822049	206822049	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYRK3	NM_003582	exon3	c.T1506C	p.C502C	.	.	111	5	138	0	.	333
DZANK1	55184	bcgsc.ca	37	20	18407712	18407712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001099407	exon10	c.A953G	p.E318G	.	.	77	4	99	1	.	.
ECHS1	1892	hgsc.bcm.edu	37	10	135182430	135182430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ECHS1	NM_004092	exon4	c.C511A	p.P171T	.	.	109	6	135	0	.	90
ECSIT	51295	hgsc.bcm.edu	37	19	11625035	11625035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ECSIT	NM_001142464	exon3	c.T98C	p.V33A	.	.	65	4	82	0	.	91
EFHA2	286097	hgsc.bcm.edu	37	8	16921741	16921741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EFHA2	NM_181723	exon2	c.C530A	p.P177H	.	.	87	4	130	0	.	91
EFTUD2	9343	hgsc.bcm.edu;bcgsc.ca	37	17	42937415	42937415	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EFTUD2	NM_004247	exon19	c.1720-2A>G	.	.	.	116	5	145	0	.	91
EGF	1950	bcgsc.ca	37	4	110901276	110901276	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGF	NM_001963	exon14	c.T2202C	p.V734V	.	.	153	5	171	0	.	524
EGLN2	112398	hgsc.bcm.edu;bcgsc.ca	37	19	41306565	41306565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGLN2	NM_053046	exon2	c.G88A	p.G30S	.	.	96	4	108	0	.	228
EGR2	1959	hgsc.bcm.edu	37	10	64575711	64575711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGR2	NM_000399	exon1	c.C79A	p.P27T	.	.	122	5	178	0	.	92
EGR3	1960	hgsc.bcm.edu	37	8	22548215	22548215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGR3	NM_004430	exon2	c.G935A	p.R312Q	.	.	100	4	207	0	.	90
EHBP1	23301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62998523	62998523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EHBP1	NM_001142616	exon5	c.A308C	p.E103A	.	.	145	26	152	0	.	154
EI24	9538	broad.mit.edu	37	11	125448101	125448101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EI24	NM_001007277	exon6	c.G389T	p.W130L	.	.	705	13	589	6	.	91
EIF2A	83939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150285799	150285799	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF2A	NM_032025	exon8	c.G660A	p.K220K	.	.	61	19	60	0	.	22
EIF2AK4	440275	hgsc.bcm.edu	37	15	40301931	40301931	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF2AK4	NM_001013703	exon26	c.G3693A	p.V1231V	.	.	96	4	138	0	.	757
EIF4A3	9775	hgsc.bcm.edu;bcgsc.ca	37	17	78109863	78109863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF4A3	NM_014740	exon11	c.C1159A	p.R387S	.	.	58	4	81	0	.	227
EIF4G1	1981	hgsc.bcm.edu	37	3	184049840	184049840	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF4G1	NM_001194946	exon33	c.C4605A	p.L1535L	.	.	78	4	86	0	.	344
ELAVL1	1994	hgsc.bcm.edu	37	19	8056658	8056658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ELAVL1	NM_001419	exon2	c.G42T	p.R14S	.	.	111	5	150	0	.	90
ELF1	1997	bcgsc.ca	37	13	41515173	41515173	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ELF1	NM_172373	exon8	c.C1140A	p.T380T	.	.	166	6	228	0	.	227
ELL2	22936	broad.mit.edu	37	5	95233983	95233983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ELL2	NM_012081	exon8	c.A1486G	p.I496V	.	.	807	9	1008	0	.	90
ELOVL6	79071	hgsc.bcm.edu;bcgsc.ca	37	4	111119423	111119423	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ELOVL6	NM_001130721	exon2	c.C69T	p.I23I	.	.	78	5	140	0	.	91
EMILIN2	84034	hgsc.bcm.edu;bcgsc.ca	37	18	2891118	2891118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EMILIN2	NM_032048	exon4	c.G993T	p.E331D	.	.	78	5	88	0	.	93
ENC1	8507	hgsc.bcm.edu	37	5	73930624	73930624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ENC1	NM_003633	exon2	c.G1687T	p.D563Y	.	.	100	4	150	0	.	228
ENPP3	5169	hgsc.bcm.edu	37	6	131996238	131996238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ENPP3	NM_005021	exon9	c.T781C	p.Y261H	.	.	84	4	92	0	.	95
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132068028	132068028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ENPP3	NM_005021	exon25	c.A2560G	p.K854E	.	.	151	37	217	0	.	95
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41573037	41573037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EP300	NM_001429	exon31	c.A5322T	p.K1774N	.	.	85	6	78	0	.	2011
EP400	57634	hgsc.bcm.edu	37	12	132549272	132549272	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EP400	NM_015409	exon48	c.A8394G	p.P2798P	.	.	73	4	100	0	.	520
EPAS1	2034	hgsc.bcm.edu	37	2	46605102	46605102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPAS1	NM_001430	exon10	c.C1319A	p.T440K	.	.	100	4	141	0	.	227
EPB41L4B	54566	hgsc.bcm.edu	37	9	112013790	112013790	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPB41L4B	NM_019114	exon13	c.A1281G	p.A427A	.	.	121	5	135	0	.	92
EPHA5	2044	broad.mit.edu	37	4	66356134	66356134	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPHA5	NM_004439	exon5	c.C1363A	p.R455R	.	.	98	5	116	2	.	1430
EPHB2	2048	hgsc.bcm.edu	37	1	23110887	23110887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPHB2	NM_017449	exon3	c.G129T	p.W43C	.	.	97	4	151	0	.	1381
EPHX1	2052	hgsc.bcm.edu	37	1	226027000	226027000	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPHX1	NM_001136018	exon5	c.G675T	p.G225G	.	.	133	6	150	0	.	281
EPPK1	83481	hgsc.bcm.edu	37	8	144942463	144942463	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPPK1	NM_031308	exon1	c.C4959A	p.T1653T	.	.	152	6	146	0	.	25
EPS15L1	58513	hgsc.bcm.edu	37	19	16488025	16488025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPS15L1	NM_021235	exon22	c.C2288T	p.A763V	.	.	89	4	97	0	.	95
ERBB2	2064	hgsc.bcm.edu	37	17	37872839	37872839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERBB2	NM_004448	exon14	c.C1718A	p.S573X	.	.	73	4	132	0	.	9959
ERBB3	2065	hgsc.bcm.edu	37	12	56487950	56487950	+	Missense_Mutation	SNP	G	G	T	rs202048840	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERBB3	NM_001982	exon14	c.G1681T	p.G561C	.	.	52	4	68	0	G|0.999;A|0.001	1403
ERCC1	2067	hgsc.bcm.edu	37	19	45920105	45920105	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERCC1	NM_001983	exon6	c.C576A	p.A192A	.	.	77	4	111	0	.	659
ERCC2	2068	hgsc.bcm.edu	37	19	45871940	45871940	+	Missense_Mutation	SNP	G	G	T	rs142462393	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERCC2	NM_000400	exon5	c.C308A	p.P103Q	.	.	86	4	125	0	G|1.000;A|0.000	848
ERCC6L2	375748	hgsc.bcm.edu	37	9	98643510	98643510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001010895	exon2	c.G439A	p.G147R	.	.	79	4	96	0	.	.
ERG	2078	bcgsc.ca	37	21	39775589	39775589	+	Missense_Mutation	SNP	T	T	C	rs201672509		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERG	NM_001243432	exon6	c.A452G	p.E151G	.	.	89	7	131	7	T|0.999;C|0.001	848
ERMP1	79956	hgsc.bcm.edu	37	9	5830996	5830996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERMP1	NM_024896	exon2	c.C371A	p.P124H	.	.	89	4	134	0	.	69
ESCO2	157570	hgsc.bcm.edu	37	8	27633887	27633887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ESCO2	NM_001017420	exon3	c.A62G	p.H21R	.	.	79	4	143	0	.	90
ESRP2	80004	hgsc.bcm.edu	37	16	68269764	68269764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ESRP2	NM_024939	exon1	c.C185A	p.P62Q	.	.	85	4	138	0	.	91
ETF1	2107	broad.mit.edu	37	5	137844391	137844391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ETF1	NM_004730	exon10	c.T1198C	p.S400P	.	.	432	9	311	0	.	229
ETF1	2107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137844000	137844000	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ETF1	NM_004730	exon11	c.C1308T	p.D436D	.	.	124	19	96	0	.	229
EVX2	344191	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176948256	176948256	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EVX2	NM_001080458	exon1	c.C249T	p.G83G	.	.	259	52	226	1	.	70
EXOC7	23265	hgsc.bcm.edu	37	17	74081819	74081819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EXOC7	NM_001145297	exon15	c.C1708A	p.P570T	.	.	91	4	127	0	.	90
EXOSC4	54512	hgsc.bcm.edu	37	8	145135446	145135446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EXOSC4	NM_019037	exon3	c.T680C	p.L227P	.	.	54	6	71	0	.	90
EYS	346007	hgsc.bcm.edu	37	6	66094343	66094343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EYS	NM_001142801	exon8	c.G1235A	p.C412Y	.	.	83	4	131	0	.	660
F12	2161	hgsc.bcm.edu	37	5	176833015	176833015	+	Silent	SNP	G	G	T	rs201132135	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	F12	NM_000505	exon3	c.C163A	p.R55R	.	.	87	4	127	0	.	90
FADS3	3995	bcgsc.ca	37	11	61646953	61646953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FADS3	NM_021727	exon3	c.T353C	p.L118P	.	.	62	7	117	5	.	46
FAHD2A	51011	hgsc.bcm.edu	37	2	96078508	96078508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAHD2A	NM_016044	exon7	c.T878C	p.L293P	.	.	98	4	105	0	.	91
FAM129B	64855	hgsc.bcm.edu;bcgsc.ca	37	9	130272586	130272586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM129B	NM_022833	exon9	c.T1000C	p.C334R	.	.	66	4	108	0	.	68
FAM155B	27112	hgsc.bcm.edu;bcgsc.ca	37	X	68725240	68725240	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM155B	NM_015686	exon1	c.C115A	p.R39R	.	.	55	4	54	0	.	131
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62067708	62067708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM161A	NM_032180	exon3	c.C431T	p.S144L	.	.	159	76	200	0	.	136
FAM169B	283777	bcgsc.ca	37	15	99023837	99023837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_182562	exon4	c.A176G	p.K59R	.	.	56	4	56	0	.	.
FAM179B	23116	hgsc.bcm.edu	37	14	45465036	45465036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM179B	NM_015091	exon2	c.A2134G	p.R712G	.	.	110	5	148	0	.	93
FAM188A	80013	hgsc.bcm.edu	37	10	15821138	15821138	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM188A	NM_024948	exon15	c.C1191A	p.V397V	.	.	69	4	112	0	.	228
FAM189A2	9413	hgsc.bcm.edu	37	9	72003281	72003281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM189A2	NM_004816	exon10	c.A1064G	p.E355G	.	.	94	4	140	0	.	90
FAM193A	8603	bcgsc.ca	37	4	2661553	2661553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM193A	NM_001256667	exon9	c.A716G	p.D239G	.	.	57	5	61	0	.	93
FAM200B	285550	bcgsc.ca	37	4	15689031	15689031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001145191	exon2	c.A431G	p.E144G	.	.	166	6	224	0	.	.
FAM212A	389119	hgsc.bcm.edu	37	3	49841899	49841899	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_203370	exon2	c.C343T	p.Q115X	.	.	83	4	124	0	.	.
FAM220A	84792	hgsc.bcm.edu	37	7	6370275	6370275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001037163	exon2	c.C511A	p.P171T	.	.	118	5	139	0	.	.
FANCM	57697	hgsc.bcm.edu;bcgsc.ca	37	14	45633698	45633698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FANCM	NM_020937	exon10	c.G1718T	p.R573L	.	.	80	4	128	0	.	569
FASN	2194	hgsc.bcm.edu	37	17	80046286	80046286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FASN	NM_004104	exon16	c.C2573T	p.S858L	.	.	40	4	54	0	.	90
FAT2	2196	broad.mit.edu	37	5	150934032	150934032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAT2	NM_001447	exon4	c.T3836C	p.V1279A	.	.	188	7	252	0	.	96
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92533159	92533159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAT3	NM_001008781	exon9	c.T6980C	p.V2327A	.	.	56	23	78	1	.	73
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616016	92616016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAT3	NM_001008781	exon23	c.T12394C	p.Y4132H	.	.	76	22	130	0	.	73
FBXL22	283807	hgsc.bcm.edu;bcgsc.ca	37	15	63889776	63889776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXL22	NM_203373	exon1	c.A185G	p.K62R	.	.	83	4	80	0	.	90
FBXO33	254170	hgsc.bcm.edu	37	14	39900875	39900875	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXO33	NM_203301	exon1	c.T492C	p.T164T	.	.	70	4	94	0	.	658
FBXO33	254170	hgsc.bcm.edu	37	14	39900902	39900902	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXO33	NM_203301	exon1	c.G465A	p.G155G	.	.	83	4	110	0	.	658
FBXO41	150726	hgsc.bcm.edu	37	2	73496418	73496418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXO41	NM_001080410	exon1	c.C341T	p.P114L	.	.	60	4	129	0	.	638
FBXW2	26190	hgsc.bcm.edu	37	9	123526956	123526956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXW2	NM_012164	exon8	c.C1246A	p.L416M	.	.	96	4	105	0	.	227
FBXW2	26190	hgsc.bcm.edu;bcgsc.ca	37	9	123526947	123526947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXW2	NM_012164	exon8	c.G1255A	p.E419K	.	.	95	5	115	0	.	227
FDPS	2224	hgsc.bcm.edu;bcgsc.ca	37	1	155289468	155289468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FDPS	NM_001135821	exon9	c.T913C	p.F305L	.	.	88	4	118	0	.	90
FEM1A	55527	hgsc.bcm.edu;bcgsc.ca	37	19	4792961	4792961	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FEM1A	NM_018708	exon1	c.C1095A	p.T365T	.	.	53	5	37	0	.	90
FER1L6	654463	bcgsc.ca	37	8	125022875	125022875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FER1L6	NM_001039112	exon14	c.T1742C	p.V581A	.	.	194	6	191	0	.	100
FGD5	152273	hgsc.bcm.edu	37	3	14958766	14958766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FGD5	NM_152536	exon12	c.T3416C	p.V1139A	.	.	84	4	121	0	.	231
FGG	2266	bcgsc.ca	37	4	155533050	155533050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FGG	NM_000509	exon4	c.A308G	p.N103S	.	.	105	4	134	1	.	90
FGL1	2267	bcgsc.ca	37	8	17722124	17722124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FGL1	NM_201553	exon9	c.G916A	p.D306N	.	.	72	4	137	0	.	90
FGL2	10875	hgsc.bcm.edu;bcgsc.ca	37	7	76828978	76828978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FGL2	NM_006682	exon1	c.A133G	p.S45G	.	.	89	4	112	0	.	92
FKBP11	51303	bcgsc.ca	37	12	49315866	49315866	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FKBP11	NM_016594	exon6	c.G507T	p.L169L	.	.	160	6	237	1	.	226
FKBP5	2289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35604882	35604882	+	Silent	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FKBP5	NM_001145775	exon4	c.T159G	p.V53V	.	.	117	40	204	0	.	227
FLNC	2318	hgsc.bcm.edu	37	7	128494726	128494726	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FLNC	NM_001458	exon41	c.C6987A	p.A2329A	.	.	95	4	113	0	.	141
FLRT1	23769	hgsc.bcm.edu;bcgsc.ca	37	11	63884020	63884020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FLRT1	NM_013280	exon2	c.A281G	p.N94S	.	.	61	5	65	0	.	90
FLVCR1	28982	bcgsc.ca	37	1	213062598	213062598	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FLVCR1	NM_014053	exon8	c.A1524G	p.T508T	.	.	176	6	170	1	.	90
FMNL1	752	hgsc.bcm.edu	37	17	43314685	43314685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FMNL1	NM_005892	exon8	c.T761C	p.V254A	.	.	97	4	120	0	.	91
FMO3	2328	hgsc.bcm.edu;bcgsc.ca	37	1	171076816	171076816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FMO3	NM_006894	exon4	c.A322G	p.T108A	.	.	143	6	156	0	.	187
FNBP1L	54874	broad.mit.edu	37	1	94012502	94012502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FNBP1L	NM_001164473	exon13	c.C1378A	p.R460S	.	.	276	7	374	0	.	227
FNDC1	84624	hgsc.bcm.edu	37	6	159618551	159618551	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FNDC1	NM_032532	exon2	c.C198A	p.T66T	.	.	96	4	134	0	.	138
FOCAD	54914	hgsc.bcm.edu;bcgsc.ca	37	9	20907148	20907148	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017794	exon24	c.2626-1G>T	.	.	.	64	4	80	0	.	.
FOXL1	2300	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612739	86612739	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXL1	NM_005250	exon1	c.A410C	p.N137T	.	.	93	12	63	1	.	227
FOXL1	2300	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612753	86612753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXL1	NM_005250	exon1	c.A424G	p.K142E	.	.	67	11	52	1	.	227
FOXR1	283150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118842683	118842683	+	Silent	SNP	C	C	A	rs145283417	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXR1	NM_181721	exon1	c.C42A	p.L14L	.	.	25	13	73	0	C|0.999;A|0.001	228
FOXR2	139628	hgsc.bcm.edu;bcgsc.ca	37	X	55650629	55650629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXR2	NM_198451	exon1	c.C485A	p.P162Q	.	.	86	5	154	0	.	227
FREM1	158326	bcgsc.ca	37	9	14740188	14740188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FREM1	NM_144966	exon37	c.G6299T	p.R2100L	.	.	84	4	121	1	.	138
FRMD6	122786	bcgsc.ca	37	14	52178291	52178291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FRMD6	NM_001267046	exon8	c.A757G	p.M253V	.	.	135	5	190	0	.	524
FRMPD1	22844	hgsc.bcm.edu	37	9	37737222	37737222	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FRMPD1	NM_014907	exon14	c.C1531A	p.R511R	.	.	106	5	122	0	.	159
FTX	100302692	bcgsc.ca	37	X	73326142	73326142	+	RNA	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	73	4	80	0	.	.
FUCA1	2517	hgsc.bcm.edu;bcgsc.ca	37	1	24186295	24186295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FUCA1	NM_000147	exon4	c.C761A	p.P254H	.	.	73	4	90	0	.	153
FUT8	2530	hgsc.bcm.edu	37	14	66083023	66083023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FUT8	NM_178155	exon5	c.G414T	p.K138N	.	.	86	4	115	0	.	91
G3BP2	9908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	76573877	76573877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	G3BP2	NM_012297	exon9	c.C874T	p.R292C	.	.	35	4	34	0	.	153
GAB1	2549	hgsc.bcm.edu;bcgsc.ca	37	4	144378898	144378898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAB1	NM_207123	exon7	c.G1651T	p.G551C	.	.	87	4	112	0	.	1146
GABBR1	2550	bcgsc.ca	37	6	29598286	29598286	+	Silent	SNP	G	G	T	rs146482908	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABBR1	NM_001470	exon4	c.C424A	p.R142R	.	.	76	4	73	0	G|1.000;A|0.000	521
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161300201	161300201	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABRA1	NM_001127643	exon6	c.C334A	p.R112R	.	.	133	42	167	0	.	93
GABRB3	2562	hgsc.bcm.edu;bcgsc.ca	37	15	26812847	26812847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABRB3	NM_021912	exon7	c.T716C	p.L239S	.	.	80	4	103	0	.	518
GAK	2580	hgsc.bcm.edu	37	4	843758	843758	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAK	NM_005255	exon27	c.G3756A	p.V1252V	.	.	84	4	94	0	.	568
GALK2	2585	hgsc.bcm.edu	37	15	49611880	49611880	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GALK2	NM_002044	exon9	c.T1047C	p.C349C	.	.	100	4	135	0	.	160
GALNS	2588	hgsc.bcm.edu	37	16	88909227	88909227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GALNS	NM_000512	exon2	c.G131A	p.G44D	.	.	84	4	92	0	.	153
GALNT1	2589	bcgsc.ca	37	18	33243680	33243680	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GALNT1	NM_020474	exon2	c.A228G	p.K76K	.	.	144	5	225	0	.	92
GALNTL6	442117	hgsc.bcm.edu	37	4	173730515	173730515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GALNTL6	NM_001034845	exon6	c.A557G	p.H186R	.	.	94	4	138	0	.	137
GAPVD1	26130	bcgsc.ca	37	9	128088783	128088783	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAPVD1	NM_015635	exon10	c.A1947G	p.E649E	.	.	164	5	226	0	.	93
GAS2L1	10634	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29706429	29706429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAS2L1	NM_152237	exon3	c.G634T	p.V212L	.	.	174	73	130	1	.	90
GAS2L1	10634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29706428	29706428	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAS2L1	NM_152237	exon3	c.634-1G>T	.	.	.	173	72	129	0	.	90
GBGT1	26301	hgsc.bcm.edu	37	9	136029419	136029419	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GBGT1	NM_021996	exon7	c.C589A	p.R197R	.	.	99	4	114	0	.	90
GBGT1	26301	hgsc.bcm.edu	37	9	136031411	136031411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GBGT1	NM_021996	exon4	c.C179A	p.P60H	.	.	83	4	149	0	.	90
GBP7	388646	hgsc.bcm.edu	37	1	89607318	89607318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GBP7	NM_207398	exon9	c.T1379C	p.L460P	.	.	100	4	148	0	.	92
GCN1L1	10985	hgsc.bcm.edu	37	12	120572406	120572406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GCN1L1	NM_006836	exon52	c.A7133G	p.H2378R	.	.	95	5	145	0	.	94
GCN1L1	10985	hgsc.bcm.edu	37	12	120600885	120600885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GCN1L1	NM_006836	exon19	c.A2027G	p.H676R	.	.	92	4	108	0	.	94
GCNT2	2651	hgsc.bcm.edu	37	6	10621632	10621632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GCNT2	NM_145649	exon4	c.C974T	p.A325V	.	.	87	4	90	0	.	92
GDPD3	79153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30124047	30124047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GDPD3	NM_024307	exon3	c.G250A	p.V84M	.	.	40	13	52	0	.	90
GEN1	348654	broad.mit.edu	37	2	17959317	17959317	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GEN1	NM_182625	exon12	c.A1251G	p.E417E	.	.	488	11	495	0	.	359
GFM2	84340	hgsc.bcm.edu;bcgsc.ca	37	5	74028915	74028915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GFM2	NM_032380	exon16	c.C1519A	p.H507N	.	.	84	4	108	0	.	90
GHDC	84514	bcgsc.ca	37	17	40342322	40342322	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GHDC	NM_001142623	exon9	c.C1344A	p.T448T	.	.	194	6	243	1	.	90
GIPC1	10755	hgsc.bcm.edu;bcgsc.ca	37	19	14589371	14589371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GIPC1	NM_202468	exon8	c.A859G	p.M287V	.	.	107	6	149	0	.	226
GLT8D1	55830	hgsc.bcm.edu	37	3	52730329	52730329	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GLT8D1	NM_152932	exon6	c.C453A	p.T151T	.	.	90	4	128	0	.	90
GLTSCR2	29997	hgsc.bcm.edu	37	19	48259071	48259071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GLTSCR2	NM_015710	exon10	c.A1288G	p.T430A	.	.	94	4	134	0	.	514
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120181981	120181981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GLUD2	NM_012084	exon1	c.G443A	p.G148E	.	.	147	38	246	0	.	131
GMPPA	29926	hgsc.bcm.edu;bcgsc.ca	37	2	220366718	220366718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GMPPA	NM_205847	exon5	c.C388T	p.H130Y	.	.	65	6	115	0	.	90
GNB2L1	10399	hgsc.bcm.edu	37	5	180668513	180668513	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GNB2L1	NM_006098	exon3	c.T408C	p.G136G	.	.	76	5	76	0	.	227
GNLY	10578	hgsc.bcm.edu;bcgsc.ca	37	2	85922521	85922521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GNLY	NM_006433	exon2	c.C131T	p.P44L	.	.	84	4	78	0	.	90
GOLGA4	2803	bcgsc.ca	37	3	37366836	37366836	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GOLGA4	NM_001172713	exon15	c.T3525C	p.L1175L	.	.	305	8	282	2	.	93
GOLGA8S	653061	bcgsc.ca	37	15	23605382	23605382	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	52	4	71	0	.	.
GOPC	57120	hgsc.bcm.edu	37	6	117884507	117884507	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GOPC	NM_020399	exon9	c.A1299G	p.G433G	.	.	96	4	129	0	.	676
GOT1	2805	bcgsc.ca	37	10	101162451	101162451	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GOT1	NM_002079	exon8	c.C988A	p.R330R	.	.	196	7	261	0	.	90
GPAM	57678	bcgsc.ca	37	10	113928147	113928147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPAM	NM_020918	exon11	c.A1030G	p.I344V	.	.	139	5	173	0	.	92
GPBAR1	151306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219127770	219127770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPBAR1	NM_170699	exon2	c.G323T	p.G108V	.	.	122	21	109	0	.	23
GPC1	2817	bcgsc.ca	37	2	241398466	241398466	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPC1	NM_002081	exon2	c.T186C	p.C62C	.	.	127	5	203	1	.	153
GPN1	11321	hgsc.bcm.edu	37	2	27852779	27852779	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPN1	NM_007266	exon2	c.G207T	p.L69L	.	.	121	5	148	0	.	159
GPR112	139378	broad.mit.edu;bcgsc.ca	37	X	135494441	135494441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR112	NM_153834	exon24	c.T8953C	p.F2985L	.	.	353	9	494	2	.	183
GPR123	84435	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134910585	134910585	+	Silent	SNP	C	C	T	rs62624493	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR123	NM_001083909	exon3	c.C111T	p.V37V	.	.	36	8	35	0	C|0.725;G|0.275	90
GPR1	2825	hgsc.bcm.edu;bcgsc.ca	37	2	207041152	207041152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR1	NM_001098199	exon3	c.C820A	p.H274N	.	.	83	4	127	0	.	90
GPR132	29933	hgsc.bcm.edu	37	14	105517772	105517772	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR132	NM_013345	exon4	c.T702C	p.A234A	.	.	99	4	152	0	.	92
GPR20	2843	hgsc.bcm.edu	37	8	142366956	142366956	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR20	NM_005293	exon2	c.C1068A	p.P356P	.	.	73	5	57	0	.	91
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91700499	91700499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR68	NM_001177676	exon2	c.G896A	p.R299H	.	.	32	11	40	0	.	91
GPR84	53831	hgsc.bcm.edu	37	12	54757304	54757304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR84	NM_020370	exon2	c.T332C	p.L111P	.	.	98	4	96	0	.	523
GPSM1	26086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139250846	139250846	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPSM1	NM_001145638	exon13	c.C1665T	p.I555I	.	.	65	19	76	0	.	90
GPSM2	29899	bcgsc.ca	37	1	109466761	109466761	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPSM2	NM_013296	exon14	c.G1740T	p.S580S	.	.	240	8	300	0	.	227
GREB1L	80000	hgsc.bcm.edu;bcgsc.ca	37	18	19079688	19079688	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001142966	exon22	c.3392-2A>G	.	.	.	67	4	77	0	.	.
GRID2IP	392862	hgsc.bcm.edu;bcgsc.ca	37	7	6561059	6561059	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001145118	exon7	c.1084+1G>A	.	.	.	97	5	144	0	.	.
GRIK1	2897	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	30971254	30971254	+	Silent	SNP	G	G	T	rs113829116	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIK1	NM_175611	exon8	c.C1102A	p.R368R	.	.	45	4	48	0	T|0.000;C|0.999	137
GRIN1	2902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140036523	140036523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIN1	NM_000832	exon2	c.C317T	p.P106L	.	.	191	32	287	0	.	187
GRIN2A	2903	hgsc.bcm.edu	37	16	9934644	9934644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIN2A	NM_000833	exon8	c.G1511T	p.R504L	.	.	72	4	109	0	.	349
GRIP2	80852	bcgsc.ca	37	3	14552726	14552726	+	RNA	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIP2	.	.	.	.	.	.	134	5	176	0	.	69
GRIP2	80852	bcgsc.ca	37	3	14562010	14562010	+	RNA	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIP2	.	.	.	.	.	.	99	5	166	0	.	69
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14548375	14548375	+	RNA	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIP2	.	.	.	.	.	.	77	28	124	1	.	69
GRIPAP1	56850	hgsc.bcm.edu;bcgsc.ca	37	X	48855662	48855662	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIPAP1	NM_020137	exon3	c.C159T	p.S53S	.	.	137	6	175	0	.	227
GRM4	2914	bcgsc.ca	37	6	34059756	34059756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRM4	NM_001256811	exon3	c.C640A	p.R214S	.	.	142	7	217	3	.	525
GSG1	83445	hgsc.bcm.edu	37	12	13238130	13238130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GSG1	NM_001080555	exon7	c.C794T	p.T265I	.	.	99	4	172	0	.	90
GSG2	83903	hgsc.bcm.edu	37	17	3628016	3628016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GSG2	NM_031965	exon1	c.G787T	p.G263W	.	.	75	4	110	0	.	297
GSPT1	2935	broad.mit.edu	37	16	11980771	11980771	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GSPT1	NM_002094	exon8	c.A975G	p.K325K	.	.	457	9	453	0	.	206
GSS	2937	bcgsc.ca	37	20	33524792	33524792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GSS	NM_000178	exon7	c.A643G	p.R215G	.	.	210	7	291	2	.	93
GTF3C2	2976	hgsc.bcm.edu	37	2	27551011	27551011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GTF3C2	NM_001521	exon18	c.C2302T	p.P768S	.	.	100	4	98	0	.	92
GTSE1	51512	hgsc.bcm.edu;bcgsc.ca	37	22	46704834	46704834	+	Silent	SNP	G	G	T	rs200502529	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GTSE1	NM_016426	exon4	c.G756T	p.A252A	.	.	64	4	112	0	G|0.999;A|0.001	187
GUSB	2990	hgsc.bcm.edu;bcgsc.ca	37	7	65435344	65435344	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GUSB	NM_000181	exon9	c.C1401A	p.I467I	.	.	89	5	82	0	.	90
GUSBP11	91316	ucsc.edu	37	22	23982593	23982593	+	RNA	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	63	7	96	1	.	.
GZF1	64412	hgsc.bcm.edu;bcgsc.ca	37	20	23345335	23345335	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GZF1	NM_022482	exon1	c.G315T	p.R105R	.	.	93	4	123	0	.	91
HADHA	3030	hgsc.bcm.edu	37	2	26453120	26453120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HADHA	NM_000182	exon7	c.A616G	p.S206G	.	.	82	4	108	0	.	91
HAUS5	23354	bcgsc.ca	37	19	36109867	36109867	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HAUS5	NM_015302	exon13	c.G1095A	p.L365L	.	.	53	4	89	1	.	68
HDAC6	10013	bcgsc.ca	37	X	48681652	48681652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HDAC6	NM_006044	exon25	c.C2843A	p.P948Q	.	.	63	4	83	1	.	230
HEATR4	399671	hgsc.bcm.edu	37	14	73969702	73969702	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HEATR4	NM_203309	exon10	c.T2002C	p.L668L	.	.	88	4	84	0	.	91
HECW2	57520	hgsc.bcm.edu	37	2	197172805	197172805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HECW2	NM_020760	exon11	c.G2439A	p.W813X	.	.	89	4	68	0	.	668
HELB	92797	hgsc.bcm.edu	37	12	66698763	66698763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HELB	NM_033647	exon2	c.G440T	p.W147L	.	.	100	5	164	0	.	515
HELB	92797	hgsc.bcm.edu	37	12	66725244	66725244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HELB	NM_033647	exon12	c.T2981C	p.M994T	.	.	85	4	81	0	.	515
HELB	92797	hgsc.bcm.edu	37	12	66731843	66731843	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HELB	NM_033647	exon13	c.C3225A	p.P1075P	.	.	98	4	140	0	.	515
HEPHL1	341208	hgsc.bcm.edu	37	11	93844139	93844139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HEPHL1	NM_001098672	exon18	c.C3116T	p.A1039V	.	.	91	4	111	0	.	71
HERC2	8924	bcgsc.ca	37	15	28362240	28362240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HERC2	NM_004667	exon87	c.G13333T	p.G4445W	.	.	231	7	360	1	.	234
HERC6	55008	hgsc.bcm.edu	37	4	89356960	89356960	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HERC6	NM_017912	exon18	c.T2334C	p.P778P	.	.	103	4	129	0	.	658
HES1	3280	mdanderson.org	37	3	193855688	193855688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HES1	NM_005524	exon4	c.C509A	p.P170Q	.	.	15	3	22	1	.	659
HGFAC	3083	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	3443800	3443800	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HGFAC	NM_001528	exon1	c.G72C	p.L24L	.	.	22	4	27	0	.	514
HHIPL2	79802	hgsc.bcm.edu	37	1	222717113	222717113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HHIPL2	NM_024746	exon2	c.A740G	p.D247G	.	.	87	4	101	0	.	69
HIATL1	84641	hgsc.bcm.edu	37	9	97218607	97218607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIATL1	NM_032558	exon10	c.T1114C	p.S372P	.	.	84	4	112	0	.	92
HIC1	3090	hgsc.bcm.edu	37	17	1960974	1960974	+	Silent	SNP	C	C	T	rs77393586		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIC1	NM_001098202	exon2	c.C1047T	p.R349R	.	.	11	8	2	0	C|0.839;T|0.161	135
HIPK1	204851	hgsc.bcm.edu;bcgsc.ca	37	1	114499248	114499248	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIPK1	NM_152696	exon6	c.1408-1G>T	.	.	.	60	4	95	0	.	361
HIST1H2BA	255626	hgsc.bcm.edu	37	6	25727451	25727451	+	Silent	SNP	G	G	T	rs145569895	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIST1H2BA	NM_170610	exon1	c.G315T	p.P105P	.	.	125	6	124	0	G|1.000;C|0.000	204
HIVEP1	3096	bcgsc.ca	37	6	12123682	12123682	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIVEP1	NM_002114	exon4	c.T3654C	p.H1218H	.	.	74	4	85	0	.	139
HMGN1	3150	hgsc.bcm.edu	37	21	40717157	40717157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HMGN1	NM_004965	exon5	c.G170T	p.G57V	.	.	117	4	151	0	.	658
HNRNPL	3191	hgsc.bcm.edu;bcgsc.ca	37	19	39336338	39336338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HNRNPL	NM_001533	exon4	c.T662C	p.V221A	.	.	66	4	79	0	.	22
HNRNPUL2	221092	hgsc.bcm.edu	37	11	62488867	62488867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HNRNPUL2	NM_001079559	exon9	c.A1511G	p.D504G	.	.	90	4	132	0	.	22
HOOK1	51361	bcgsc.ca	37	1	60338576	60338576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HOOK1	NM_015888	exon22	c.G2126T	p.R709L	.	.	206	7	266	1	.	154
HOXB7	3217	bcgsc.ca	37	17	46688212	46688212	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HOXB7	NM_004502	exon1	c.C69A	p.T23T	.	.	110	5	129	0	.	90
HPS1	3257	hgsc.bcm.edu	37	10	100182230	100182230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HPS1	NM_000195	exon17	c.G1639A	p.V547M	.	.	89	4	87	0	.	91
HPS5	11234	bcgsc.ca	37	11	18333465	18333465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HPS5	NM_181507	exon3	c.A215G	p.H72R	.	.	181	7	219	2	.	133
HS3ST5	222537	hgsc.bcm.edu	37	6	114383915	114383915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HS3ST5	NM_153612	exon1	c.G95T	p.G32V	.	.	100	4	125	0	.	92
HSD3B7	80270	hgsc.bcm.edu;bcgsc.ca	37	16	30997766	30997766	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSD3B7	NM_025193	exon4	c.T345C	p.A115A	.	.	123	6	96	0	.	90
HSP90AB4P	664618	ucsc.edu	37	15	58984987	58984987	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	40	4	60	0	.	.
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	122930222	122930222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSPA8	NM_006597	exon5	c.A1079G	p.N360S	.	.	122	12	146	0	.	654
HSPG2	3339	hgsc.bcm.edu	37	1	22170757	22170757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSPG2	NM_005529	exon65	c.T8500C	p.S2834P	.	.	105	5	184	0	.	141
HSPG2	3339	hgsc.bcm.edu	37	1	22175467	22175467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSPG2	NM_005529	exon58	c.G7504A	p.V2502M	.	.	97	4	130	0	.	141
HTRA4	203100	hgsc.bcm.edu	37	8	38845473	38845473	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTRA4	NM_153692	exon9	c.C1287T	p.H429H	.	.	46	4	87	0	.	90
HTT	3064	hgsc.bcm.edu	37	4	3241606	3241606	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon67	c.G9249T	p.L3083L	.	.	92	4	91	0	.	281
HTT	3064	hgsc.bcm.edu;bcgsc.ca	37	4	3131704	3131704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon13	c.G1797T	p.Q599H	.	.	99	6	100	0	.	281
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3225849	3225849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon56	c.G7756T	p.A2586S	.	.	98	35	98	0	.	281
ICMT	23463	broad.mit.edu;ucsc.edu	37	1	6292060	6292060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ICMT	NM_012405	exon4	c.G574T	p.E192X	.	.	182	44	157	2	.	650
IDE	3416	hgsc.bcm.edu	37	10	94291601	94291601	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IDE	NM_004969	exon4	c.G565T	p.E189X	.	.	76	5	114	0	.	92
IFIT2	3433	hgsc.bcm.edu;bcgsc.ca	37	10	91066851	91066851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFIT2	NM_001547	exon2	c.T1138C	p.F380L	.	.	91	4	96	0	.	92
IFNAR2	3455	broad.mit.edu;ucsc.edu	37	21	34617294	34617294	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFNAR2	NM_207585	exon4	c.C136T	p.R46X	.	.	185	41	158	3	.	90
IFT122	55764	hgsc.bcm.edu;bcgsc.ca	37	3	129238004	129238004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFT122	NM_052985	exon29	c.C3599A	p.P1200Q	.	.	93	5	145	0	.	92
IFT172	26160	hgsc.bcm.edu	37	2	27679376	27679376	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFT172	NM_015662	exon31	c.3371+2T>C	.	.	.	106	5	120	0	.	154
IFT172	26160	hgsc.bcm.edu	37	2	27703934	27703934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFT172	NM_015662	exon8	c.T764C	p.V255A	.	.	83	4	117	0	.	154
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65621487	65621487	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGDCC3	NM_004884	exon15	c.2206-1G>T	.	.	.	46	16	51	0	.	93
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca	37	6	160450671	160450671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGF2R	NM_000876	exon7	c.C866A	p.P289Q	.	.	125	5	168	0	.	118
IGSF22	283284	hgsc.bcm.edu	37	11	18732375	18732375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGSF22	NM_173588	exon16	c.A2399G	p.E800G	.	.	132	6	137	0	.	140
IGSF3	3321	ucsc.edu	37	1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	rs76151115	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGSF3	NM_001542	exon8	c.G2039A	p.R680Q	.	.	85	14	102	5	C|0.990;T|0.010	92
IKBKAP	8518	hgsc.bcm.edu	37	9	111685163	111685163	+	Missense_Mutation	SNP	G	G	A	rs202179488	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKBKAP	NM_003640	exon6	c.C511T	p.H171Y	.	.	100	4	110	0	G|0.999;C|0.001	318
IKBKAP	8518	hgsc.bcm.edu;bcgsc.ca	37	9	111665171	111665171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKBKAP	NM_003640	exon16	c.T1802C	p.V601A	.	.	120	6	175	0	.	318
IKZF3	22806	bcgsc.ca;mdanderson.org	37	17	37922726	37922726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKZF3	NM_012481	exon8	c.G847T	p.D283Y	.	.	19	3	29	0	.	971
IL12RB1	3594	hgsc.bcm.edu	37	19	18183013	18183013	+	Silent	SNP	C	C	A	rs144647048	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IL12RB1	NM_153701	exon9	c.G930T	p.S310S	.	.	95	4	118	0	C|1.000;T|0.000	91
IL17REL	400935	hgsc.bcm.edu	37	22	50438927	50438927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IL17REL	NM_001001694	exon6	c.A314G	p.D105G	.	.	85	4	91	0	.	23
IL1R1	3554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102791944	102791944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IL1R1	NM_000877	exon10	c.A1142G	p.D381G	.	.	557	109	555	0	.	523
IMPDH1	3614	hgsc.bcm.edu	37	7	128034563	128034563	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IMPDH1	NM_000883	exon15	c.A1641G	p.A547A	.	.	91	4	96	0	.	230
INTS8	55656	bcgsc.ca	37	8	95839950	95839950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	INTS8	NM_017864	exon4	c.G447T	p.W149C	.	.	283	8	133	0	.	90
IPO11	51194	bcgsc.ca	37	5	61846249	61846249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IPO11	NM_001134779	exon25	c.C2426A	p.P809Q	.	.	244	6	205	1	.	227
IPO5	3843	bcgsc.ca	37	13	98658395	98658395	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IPO5	NM_002271	exon17	c.A1563G	p.K521K	.	.	79	4	75	1	.	228
IPP	3652	bcgsc.ca	37	1	46206906	46206906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IPP	NM_001145349	exon3	c.A391G	p.K131E	.	.	133	5	199	0	.	91
IQCE	23288	hgsc.bcm.edu	37	7	2644523	2644523	+	Silent	SNP	G	G	A	rs201471152	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IQCE	NM_152558	exon19	c.G1641A	p.V547V	.	.	91	4	111	0	G|0.999;T|0.000	226
IRF6	3664	hgsc.bcm.edu;bcgsc.ca	37	1	209974642	209974642	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IRF6	NM_006147	exon3	c.C117T	p.P39P	.	.	79	4	101	0	.	92
IRS4	8471	bcgsc.ca	37	X	107978982	107978982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IRS4	NM_003604	exon1	c.T593C	p.I198T	.	.	67	4	113	1	.	623
IRS4	8471	hgsc.bcm.edu	37	X	107979422	107979422	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IRS4	NM_003604	exon1	c.G153T	p.P51P	.	.	121	6	173	0	.	623
ITGAL	3683	bcgsc.ca	37	16	30495525	30495525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITGAL	NM_002209	exon9	c.C947T	p.T316I	.	.	52	4	61	0	.	994
ITGB8	3696	bcgsc.ca	37	7	20449543	20449543	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITGB8	NM_002214	exon14	c.C2233A	p.R745R	.	.	251	7	345	0	.	227
ITGB8	3696	hgsc.bcm.edu	37	7	20444277	20444277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITGB8	NM_002214	exon11	c.T1714C	p.C572R	.	.	100	6	136	0	.	227
ITIH2	3698	hgsc.bcm.edu	37	10	7751027	7751027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITIH2	NM_002216	exon4	c.T235C	p.S79P	.	.	91	4	107	0	.	93
ITIH4	3700	bcgsc.ca	37	3	52848071	52848071	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITIH4	NM_002218	exon23	c.G2643A	p.E881E	.	.	78	4	171	0	.	46
ITIH4	3700	bcgsc.ca	37	3	52860028	52860028	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITIH4	NM_001166449	exon6	c.T633C	p.A211A	.	.	282	7	375	2	.	46
ITPR1	3708	hgsc.bcm.edu	37	3	4730230	4730230	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR1	NM_001099952	exon31	c.C3727T	p.Q1243X	.	.	97	4	139	0	.	710
ITPR1	3708	hgsc.bcm.edu	37	3	4735176	4735176	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR1	NM_001099952	exon33	c.G4005T	p.L1335L	.	.	98	4	122	0	.	710
ITPR1	3708	hgsc.bcm.edu	37	3	4747895	4747895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR1	NM_001099952	exon37	c.G4675A	p.V1559I	.	.	86	4	135	0	.	710
ITPR1	3708	hgsc.bcm.edu	37	3	4774886	4774886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR1	NM_001168272	exon42	c.G5290T	p.G1764C	.	.	52	4	59	0	.	710
ITPR2	3709	hgsc.bcm.edu	37	12	26732975	26732975	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR2	NM_002223	exon33	c.T4494A	p.N1498K	.	.	124	5	99	0	.	542
JMY	133746	bcgsc.ca	37	5	78610669	78610669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	JMY	NM_152405	exon9	c.G2654T	p.R885M	.	.	254	8	316	0	.	227
JMY	133746	hgsc.bcm.edu	37	5	78533050	78533050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	JMY	NM_152405	exon1	c.A577G	p.I193V	.	.	121	4	206	0	.	227
KAL1	3730	hgsc.bcm.edu	37	X	8565289	8565289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KAL1	NM_000216	exon4	c.C327A	p.F109L	.	.	94	4	156	0	.	134
KANK4	163782	hgsc.bcm.edu	37	1	62739434	62739434	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KANK4	NM_181712	exon3	c.C1342A	p.R448R	.	.	113	5	140	0	.	74
KANSL3	55683	hgsc.bcm.edu	37	2	97302719	97302719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001115016	exon2	c.A154G	p.S52G	.	.	101	5	161	0	.	.
KAT2B	8850	hgsc.bcm.edu;bcgsc.ca	37	3	20153102	20153102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KAT2B	NM_003884	exon6	c.G866A	p.C289Y	.	.	73	4	86	0	.	228
KAT6A	7994	hgsc.bcm.edu	37	8	41790607	41790607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001099412	exon18	c.T5131C	p.F1711L	.	.	72	4	185	0	.	.
KBTBD3	143879	hgsc.bcm.edu;bcgsc.ca	37	11	105924774	105924774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KBTBD3	NM_152433	exon3	c.G642A	p.M214I	.	.	92	4	88	0	.	91
KBTBD7	84078	hgsc.bcm.edu	37	13	41768100	41768100	+	Missense_Mutation	SNP	G	G	T	rs138677495	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KBTBD7	NM_032138	exon1	c.C294A	p.S98R	.	.	99	4	153	0	G|1.000;A|0.000	91
KCNA10	3744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111061042	111061042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNA10	NM_005549	exon1	c.A368G	p.D123G	.	.	29	5	42	0	.	156
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5153812	5153812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNA5	NM_002234	exon1	c.C499T	p.R167C	.	.	63	26	98	0	.	715
KCNAB1	7881	hgsc.bcm.edu;bcgsc.ca	37	3	155838515	155838515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNAB1	NM_172160	exon1	c.T115C	p.S39P	.	.	137	6	197	0	.	94
KCNH4	23415	hgsc.bcm.edu;bcgsc.ca	37	17	40321671	40321671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNH4	NM_012285	exon9	c.G1414A	p.G472R	.	.	66	4	73	0	.	153
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133153569	133153569	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNQ3	NM_004519	exon10	c.G1272A	p.L424L	.	.	105	50	85	0	.	138
KCNQ4	9132	hgsc.bcm.edu	37	1	41285131	41285131	+	Missense_Mutation	SNP	T	T	C	rs80358276	bycluster;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNQ4	NM_004700	exon5	c.T821C	p.L274P	.	.	137	6	237	0	.	90
KDM2A	22992	hgsc.bcm.edu	37	11	67017960	67017960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDM2A	NM_012308	exon17	c.A2459G	p.Q820R	.	.	85	4	107	0	.	661
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7749921	7749921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDM6B	NM_001080424	exon8	c.C574T	p.R192W	.	.	63	26	73	0	.	205
KDSR	2531	hgsc.bcm.edu;bcgsc.ca	37	18	61034244	61034244	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDSR	NM_002035	exon1	c.G108A	p.V36V	.	.	134	6	226	0	.	227
KIAA0141	9812	bcgsc.ca	37	5	141304203	141304203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA0141	NM_001142603	exon2	c.C89A	p.P30Q	.	.	77	4	112	0	.	91
KIAA0196	9897	hgsc.bcm.edu	37	8	126093910	126093910	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA0196	NM_014846	exon5	c.C511A	p.R171R	.	.	121	5	114	0	.	92
KIAA0368	23392	hgsc.bcm.edu	37	9	114172333	114172333	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA0368	NM_001080398	exon24	c.A3072G	p.K1024K	.	.	122	5	109	0	.	68
KIAA0430	9665	bcgsc.ca	37	16	15730092	15730092	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA0430	NM_014647	exon3	c.T252C	p.R84R	.	.	156	6	228	1	.	90
KIAA1033	23325	hgsc.bcm.edu;bcgsc.ca	37	12	105534742	105534742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1033	NM_015275	exon17	c.G1626T	p.L542F	.	.	103	5	162	0	.	91
KIAA1109	84162	hgsc.bcm.edu	37	4	123274969	123274969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1109	NM_015312	exon80	c.G14102T	p.G4701V	.	.	87	4	132	0	.	80
KIAA1407	57577	hgsc.bcm.edu	37	3	113737567	113737567	+	Missense_Mutation	SNP	C	C	A	rs76418892	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1407	NM_020817	exon8	c.G1121T	p.R374L	.	.	81	4	93	0	C|0.991;T|0.009	92
KIAA1429	25962	hgsc.bcm.edu;bcgsc.ca	37	8	95531221	95531221	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1429	NM_015496	exon9	c.A2505G	p.E835E	.	.	68	4	64	0	.	92
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138554406	138554406	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1549	NM_020910	exon14	c.C4653T	p.D1551D	.	.	194	31	161	0	.	369
KIAA2022	340533	hgsc.bcm.edu	37	X	73960460	73960460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA2022	NM_001008537	exon3	c.G3932T	p.R1311L	.	.	77	5	127	0	.	183
KIDINS220	57498	hgsc.bcm.edu	37	2	8919191	8919191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIDINS220	NM_020738	exon19	c.C2449A	p.Q817K	.	.	81	4	137	0	.	93
KIF18B	146909	hgsc.bcm.edu	37	17	43005599	43005599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF18B	NM_001264573	exon13	c.C2107A	p.P703T	.	.	79	4	127	0	.	70
KIF18B	146909	hgsc.bcm.edu;bcgsc.ca	37	17	43012257	43012257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF18B	NM_001264573	exon4	c.T518C	p.L173P	.	.	56	5	57	0	.	70
KIF19	124602	hgsc.bcm.edu;bcgsc.ca	37	17	72324604	72324604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF19	NM_153209	exon2	c.A80G	p.E27G	.	.	49	4	78	0	.	90
KIF1A	547	bcgsc.ca	37	2	241715325	241715325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF1A	NM_001244008	exon11	c.A901G	p.T301A	.	.	154	7	209	3	.	91
KIF20A	10112	hgsc.bcm.edu	37	5	137518950	137518950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF20A	NM_005733	exon8	c.T925C	p.Y309H	.	.	84	4	83	0	.	90
KLC2	64837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66031564	66031564	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLC2	NM_022822	exon8	c.G990T	p.L330L	.	.	142	18	118	0	.	90
KLC3	147700	hgsc.bcm.edu	37	19	45850019	45850019	+	Missense_Mutation	SNP	C	C	A	rs76874841	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLC3	NM_177417	exon3	c.C476A	p.P159Q	.	.	65	4	102	0	C|0.998;G|0.002	91
KLF12	11278	hgsc.bcm.edu;bcgsc.ca	37	13	74420058	74420058	+	Silent	SNP	C	C	A	rs200955639	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLF12	NM_007249	exon4	c.G576T	p.S192S	.	.	137	7	166	0	C|0.999;T|0.000	91
KLHDC7A	127707	hgsc.bcm.edu	37	1	18807714	18807714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHDC7A	NM_152375	exon1	c.C239T	p.P80L	.	.	97	4	125	0	.	93
KLHL10	317719	hgsc.bcm.edu	37	17	39998458	39998458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHL10	NM_152467	exon2	c.A578G	p.D193G	.	.	87	4	121	0	.	227
KLHL20	27252	bcgsc.ca	37	1	173754311	173754311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHL20	NM_014458	exon12	c.G1756T	p.G586W	.	.	192	7	157	1	.	187
KLHL2	11275	bcgsc.ca	37	4	166239079	166239079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHL2	NM_001161521	exon14	c.A1723G	p.T575A	.	.	288	7	350	3	.	226
KLHL31	401265	hgsc.bcm.edu	37	6	53516499	53516499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHL31	NM_001003760	exon3	c.C1802A	p.P601H	.	.	88	5	133	0	.	23
KLHL33	123103	hgsc.bcm.edu	37	14	20898426	20898426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001109997	exon2	c.T409C	p.F137L	.	.	95	4	116	0	.	.
KLHL38	340359	bcgsc.ca	37	8	124658197	124658197	+	Silent	SNP	G	G	T	rs200081099		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHL38	NM_001081675	exon3	c.C1528A	p.R510R	.	.	538	12	265	1	G|0.999;T|0.001	68
KLK7	5650	hgsc.bcm.edu	37	19	51485084	51485084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLK7	NM_139277	exon3	c.C160T	p.H54Y	.	.	54	4	136	0	.	650
KNDC1	85442	bcgsc.ca	37	10	135027168	135027168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KNDC1	NM_152643	exon25	c.A4463G	p.H1488R	.	.	89	6	144	1	.	229
KRT16	3868	hgsc.bcm.edu;bcgsc.ca	37	17	39766790	39766790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT16	NM_005557	exon6	c.A1073G	p.E358G	.	.	83	4	98	0	.	91
KRT27	342574	hgsc.bcm.edu	37	17	38936687	38936687	+	Silent	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT27	NM_181537	exon3	c.T549A	p.L183L	.	.	82	4	123	0	.	90
KRT75	9119	hgsc.bcm.edu	37	12	52826983	52826983	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT75	NM_004693	exon2	c.G552T	p.L184L	.	.	69	4	100	0	.	90
KRT79	338785	hgsc.bcm.edu	37	12	53217754	53217754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT79	NM_175834	exon6	c.C1063A	p.L355M	.	.	87	4	140	0	.	72
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46020985	46020985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_198689	exon2	c.C449A	p.P150H	.	.	437	120	630	0	.	.
KRTAP5-1	387264	broad.mit.edu	37	11	1606164	1606164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRTAP5-1	NM_001005922	exon1	c.A316C	p.K106Q	.	.	77	9	150	6	.	44
KRTAP9-9	81870	hgsc.bcm.edu	37	17	39411917	39411917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_030975	exon1	c.A280G	p.T94A	.	.	100	5	148	0	.	.
KRTCAP2	200185	broad.mit.edu	37	1	155142286	155142286	+	Silent	SNP	G	G	T	rs199976320	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRTCAP2	NM_173852	exon4	c.C349A	p.R117R	.	.	757	9	590	1	G|0.999;A|0.000	90
KTN1	3895	broad.mit.edu	37	14	56115518	56115518	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KTN1	NM_001079521	exon21	c.2299-2A>G	.	.	.	293	6	302	1	.	1147
L3MBTL3	84456	bcgsc.ca	37	6	130460812	130460812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	L3MBTL3	NM_032438	exon23	c.A2257G	p.S753G	.	.	81	4	114	1	.	96
LAMB4	22798	hgsc.bcm.edu	37	7	107706357	107706357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LAMB4	NM_007356	exon21	c.G2686T	p.D896Y	.	.	81	5	65	0	.	140
LAMB4	22798	hgsc.bcm.edu;bcgsc.ca	37	7	107720067	107720067	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LAMB4	NM_007356	exon15	c.T1866C	p.I622I	.	.	49	4	74	0	.	140
LAMC1	3915	hgsc.bcm.edu	37	1	183086467	183086467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LAMC1	NM_002293	exon9	c.G1577T	p.W526L	.	.	87	5	93	0	.	252
LARP4	113251	hgsc.bcm.edu	37	12	50822725	50822725	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LARP4	NM_001170808	exon3	c.A174G	p.A58A	.	.	86	4	85	0	.	91
LCA5L	150082	bcgsc.ca	37	21	40795192	40795192	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LCA5L	NM_152505	exon5	c.T547C	p.L183L	.	.	147	5	171	0	.	22
LCN2	3934	hgsc.bcm.edu	37	9	130911932	130911932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LCN2	NM_005564	exon1	c.A128G	p.Q43R	.	.	99	5	110	0	.	90
LDLRAD3	143458	hgsc.bcm.edu	37	11	36250861	36250861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LDLRAD3	NM_174902	exon6	c.A952G	p.S318G	.	.	90	4	127	0	.	90
LGALS9C	654346	broad.mit.edu	37	17	18387196	18387196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LGALS9C	NM_001040078	exon2	c.C47T	p.P16L	.	.	976	8	1255	3	.	69
LGI2	55203	hgsc.bcm.edu	37	4	25005815	25005815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LGI2	NM_018176	exon8	c.G896T	p.G299V	.	.	89	4	152	0	.	90
LGR5	8549	hgsc.bcm.edu	37	12	71976289	71976289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LGR5	NM_003667	exon17	c.C1606A	p.L536I	.	.	114	5	161	0	.	527
LHX5	64211	hgsc.bcm.edu	37	12	113901182	113901182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LHX5	NM_022363	exon5	c.T1022C	p.F341S	.	.	88	6	118	0	.	90
LINC00475	158314	ucsc.edu	37	9	94903873	94903873	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	32	4	44	0	.	.
LIPT2	387787	hgsc.bcm.edu	37	11	74203187	74203187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LIPT2	NM_001144869	exon2	c.C689A	p.P230H	.	.	95	4	117	0	.	68
LLGL2	3993	hgsc.bcm.edu	37	17	73570325	73570325	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LLGL2	NM_004524	exon23	c.T2937C	p.A979A	.	.	96	4	113	0	.	251
LMBR1L	55716	bcgsc.ca	37	12	49494188	49494188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LMBR1L	NM_018113	exon15	c.T1223C	p.V408A	.	.	86	4	111	0	.	227
LOC392232	0	bcgsc.ca	37	8	73152903	73152903	+	RNA	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NR_033867	exon5	c.629+2T>C	.	.	.	102	40	110	1	.	.
LOC727924	0	bcgsc.ca	37	15	22298248	22298248	+	RNA	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	562	83	794	1	.	.
LOXHD1	125336	hgsc.bcm.edu	37	18	44190747	44190747	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_144612	exon6	c.C751T	p.L251L	.	.	79	4	83	0	.	.
LPA	4018	bcgsc.ca	37	6	160966472	160966472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPA	NM_005577	exon34	c.G5398T	p.A1800S	.	.	54	4	100	0	.	74
LPAR3	23566	hgsc.bcm.edu;bcgsc.ca	37	1	85331068	85331068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPAR3	NM_012152	exon2	c.G736T	p.G246W	.	.	71	4	118	0	.	502
LPIN3	64900	hgsc.bcm.edu;bcgsc.ca	37	20	39986061	39986061	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPIN3	NM_022896	exon16	c.C2013A	p.I671I	.	.	65	5	66	0	.	93
LPO	4025	hgsc.bcm.edu;bcgsc.ca	37	17	56344752	56344752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPO	NM_006151	exon12	c.A1736G	p.Q579R	.	.	62	4	88	0	.	91
LPP	4026	hgsc.bcm.edu	37	3	188327323	188327323	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPP	NM_005578	exon6	c.G804T	p.R268R	.	.	89	4	119	0	.	659
LPP	4026	hgsc.bcm.edu;bcgsc.ca	37	3	188592145	188592145	+	Missense_Mutation	SNP	G	G	T	rs9830664	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPP	NM_005578	exon11	c.G1717T	p.G573C	.	.	79	4	67	0	G|0.998;A|0.002	659
LPPR5	0	hgsc.bcm.edu	37	1	99418828	99418828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001037317	exon3	c.G419T	p.G140V	.	.	79	4	91	0	.	.
LRCH4	4034	hgsc.bcm.edu	37	7	100175328	100175328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRCH4	NM_002319	exon9	c.A1075G	p.S359G	.	.	72	4	67	0	.	136
LRIF1	55791	bcgsc.ca	37	1	111490716	111490716	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRIF1	NM_018372	exon4	c.C2175A	p.T725T	.	.	221	6	245	1	.	93
LRMP	4033	broad.mit.edu	37	12	25259975	25259975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRMP	NM_001204126	exon19	c.T1247C	p.V416A	.	.	620	8	693	0	.	228
LRP1	4035	hgsc.bcm.edu	37	12	57584700	57584700	+	Silent	SNP	C	C	T	rs200381805		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1	NM_002332	exon43	c.C7144T	p.L2382L	.	.	67	4	57	0	C|0.999;T|0.000	596
LRP1	4035	hgsc.bcm.edu	37	12	57592334	57592334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1	NM_002332	exon60	c.C9557A	p.T3186N	.	.	84	4	65	0	.	596
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57573622	57573622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1	NM_002332	exon30	c.C5024G	p.T1675R	.	.	72	16	89	0	.	596
LRP1B	53353	hgsc.bcm.edu;bcgsc.ca	37	2	141777526	141777526	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1B	NM_018557	exon12	c.T1935C	p.S645S	.	.	84	5	100	0	.	311
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141773444	141773444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1B	NM_018557	exon13	c.G2011T	p.D671Y	.	.	238	72	322	0	.	311
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170044602	170044602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP2	NM_004525	exon49	c.A9206T	p.H3069L	.	.	196	49	318	0	.	175
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46896443	46896443	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP4	NM_002334	exon28	c.C4137A	p.V1379V	.	.	114	31	134	0	.	94
LRRC32	2615	bcgsc.ca	37	11	76372026	76372026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRC32	NM_005512	exon3	c.T611C	p.L204P	.	.	50	4	62	0	.	90
LRRC43	254050	hgsc.bcm.edu;bcgsc.ca	37	12	122669301	122669301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRC43	NM_001098519	exon2	c.G386T	p.R129L	.	.	144	6	192	0	.	135
LRRC7	57554	hgsc.bcm.edu	37	1	70504859	70504859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRC7	NM_020794	exon19	c.C3238A	p.P1080T	.	.	93	4	121	0	.	163
LRRFIP2	9209	hgsc.bcm.edu	37	3	37107332	37107332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRFIP2	NM_006309	exon24	c.G1668T	p.Q556H	.	.	137	6	167	0	.	91
LRRTM2	26045	bcgsc.ca	37	5	138209029	138209029	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_015564	exon2	c.C1221A	p.T407T	.	.	194	6	243	1	.	.
LSM10	84967	bcgsc.ca	37	1	36859460	36859460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LSM10	NM_032881	exon2	c.A271G	p.T91A	.	.	167	6	235	2	.	68
LSS	4047	hgsc.bcm.edu	37	21	47647541	47647541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LSS	NM_001145436	exon3	c.A244G	p.T82A	.	.	89	4	149	0	.	90
LSS	4047	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	47616149	47616149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LSS	NM_001001438	exon18	c.G1703T	p.R568L	.	.	41	4	72	0	.	90
LTBP1	4052	hgsc.bcm.edu	37	2	33526595	33526595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LTBP1	NM_206943	exon22	c.A3365G	p.D1122G	.	.	94	4	118	0	.	230
LTK	4058	hgsc.bcm.edu	37	15	41801262	41801262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LTK	NM_002344	exon8	c.C1063A	p.P355T	.	.	163	7	238	0	.	1377
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	24759781	24759781	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LUZP2	NM_001252010	exon4	c.C266G	p.S89C	.	.	183	55	251	1	.	92
LY96	23643	hgsc.bcm.edu	37	8	74941217	74941217	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LY96	NM_015364	exon5	c.T411C	p.A137A	.	.	94	4	84	0	.	90
LYG2	254773	hgsc.bcm.edu;bcgsc.ca	37	2	99870712	99870712	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LYG2	NM_175735	exon2	c.C12A	p.S4S	.	.	57	5	73	0	.	91
MACF1	23499	bcgsc.ca	37	1	39919426	39919426	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MACF1	NM_012090	exon85	c.A14613G	p.A4871A	.	.	226	7	271	1	.	165
MADD	8567	hgsc.bcm.edu	37	11	47307982	47307982	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MADD	NM_130470	exon15	c.2552-2A>G	.	.	.	69	4	102	0	.	682
MAMDC2	256691	hgsc.bcm.edu	37	9	72728033	72728033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAMDC2	NM_153267	exon5	c.T628C	p.F210L	.	.	96	4	120	0	.	91
MAN1B1	11253	bcgsc.ca	37	9	139992289	139992289	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAN1B1	NM_016219	exon5	c.A630G	p.G210G	.	.	137	6	183	4	.	91
MAN2B2	23324	bcgsc.ca	37	4	6611775	6611775	+	Silent	SNP	C	C	A	rs148857397	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAN2B2	NM_015274	exon13	c.C2257A	p.R753R	.	.	126	5	202	0	C|1.000;T|0.000	92
MANEA	79694	hgsc.bcm.edu	37	6	96034523	96034523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MANEA	NM_024641	exon2	c.G208A	p.E70K	.	.	96	3	111	0	.	155
MAP2K2	5605	bcgsc.ca	37	19	4123816	4123816	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP2K2	NM_030662	exon1	c.C57A	p.A19A	.	.	85	4	73	1	.	510
MAP2K7	5609	hgsc.bcm.edu	37	19	7975215	7975215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP2K7	NM_145185	exon4	c.G404T	p.W135L	.	.	96	4	135	0	.	1450
MAP3K11	4296	hgsc.bcm.edu	37	11	65373551	65373551	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP3K11	NM_002419	exon7	c.G1605A	p.L535L	.	.	58	4	48	0	.	980
MAP3K4	4216	hgsc.bcm.edu	37	6	161508771	161508771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP3K4	NM_006724	exon10	c.G2608A	p.A870T	.	.	92	4	129	0	.	548
MAP7D1	55700	hgsc.bcm.edu	37	1	36636731	36636731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP7D1	NM_018067	exon2	c.A206G	p.E69G	.	.	77	4	119	0	.	138
MAST4	375449	hgsc.bcm.edu	37	5	66459398	66459398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAST4	NM_001164664	exon29	c.G4391A	p.R1464H	.	.	62	4	88	0	.	647
MAT1A	4143	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82039957	82039957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAT1A	NM_000429	exon5	c.C521A	p.P174H	.	.	70	19	100	0	.	90
MAZ	4150	hgsc.bcm.edu	37	16	29820871	29820871	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAZ	NM_001042539	exon5	c.G1290T	p.T430T	.	.	125	5	141	0	.	136
MBD1	4152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47803368	47803368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MBD1	NM_001204137	exon4	c.G226T	p.A76S	.	.	131	28	166	0	.	228
MBD4	8930	bcgsc.ca	37	3	129151405	129151405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MBD4	NM_003925	exon7	c.G1606A	p.G536R	.	.	206	6	250	0	.	228
MBLAC1	255374	bcgsc.ca	37	7	99725583	99725583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MBLAC1	NM_203397	exon2	c.G565A	p.V189M	.	.	151	6	155	0	.	135
MBTPS1	8720	hgsc.bcm.edu	37	16	84097002	84097002	+	Missense_Mutation	SNP	A	A	G	rs138967616		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MBTPS1	NM_003791	exon19	c.T2480C	p.I827T	.	.	121	5	143	0	A|1.000;G|0.000	92
MC2R	4158	hgsc.bcm.edu	37	18	13884772	13884772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MC2R	NM_000529	exon2	c.C746A	p.P249H	.	.	94	4	171	0	.	95
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	21	47680812	47680812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCM3AP	NM_003906	exon15	c.A3476G	p.Q1159R	.	.	54	4	122	0	.	291
MCM8	84515	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	5974231	5974231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCM8	NM_032485	exon18	c.T2320C	p.S774P	.	.	88	8	111	1	.	227
MCTP1	79772	hgsc.bcm.edu	37	5	94275844	94275844	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCTP1	NM_024717	exon5	c.G1117T	p.G373X	.	.	82	4	124	0	.	92
MDGA2	161357	hgsc.bcm.edu	37	14	47613426	47613426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MDGA2	NM_001113498	exon4	c.A647G	p.E216G	.	.	112	5	146	0	.	95
MED15	51586	bcgsc.ca	37	22	20891420	20891420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MED15	NM_015889	exon2	c.A85G	p.K29E	.	.	137	5	196	0	.	211
MED24	9862	bcgsc.ca	37	17	38175800	38175800	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MED24	NM_014815	exon26	c.A2952G	p.K984K	.	.	66	4	94	0	.	187
MEGF8	1954	bcgsc.ca	37	19	42847672	42847672	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MEGF8	NM_001271938	exon9	c.G1557T	p.A519A	.	.	178	6	251	0	.	23
MEIS3	56917	hgsc.bcm.edu	37	19	47920594	47920594	+	Missense_Mutation	SNP	G	G	T	rs200901098	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MEIS3	NM_001009813	exon2	c.C26A	p.P9Q	.	.	99	4	121	0	G|0.999;A|0.000	90
MEOX1	4222	hgsc.bcm.edu	37	17	41720883	41720883	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MEOX1	NM_004527	exon2	c.G615T	p.A205A	.	.	87	4	113	0	.	90
METTL16	79066	hgsc.bcm.edu	37	17	2323799	2323799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	METTL16	NM_024086	exon10	c.A1154G	p.K385R	.	.	74	4	50	0	.	228
MEX3D	399664	hgsc.bcm.edu	37	19	1556545	1556545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MEX3D	NM_203304	exon2	c.G973A	p.E325K	.	.	89	4	75	0	.	658
MFGE8	4240	hgsc.bcm.edu	37	15	89442944	89442944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MFGE8	NM_005928	exon7	c.C969A	p.Y323X	.	.	97	4	125	0	.	91
MFHAS1	9258	bcgsc.ca	37	8	8749465	8749465	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MFHAS1	NM_004225	exon1	c.T1104C	p.G368G	.	.	48	4	86	0	.	90
MFSD7	84179	hgsc.bcm.edu	37	4	678289	678289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MFSD7	NM_032219	exon6	c.G823A	p.A275T	.	.	79	4	125	0	.	90
MGA	23269	hgsc.bcm.edu	37	15	41989188	41989188	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MGA	NM_001080541	exon3	c.G1980T	p.V660V	.	.	86	4	88	0	.	522
MGAT1	4245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180219412	180219412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MGAT1,NS,carcinoma,-1	MGAT1	NM_001114617	exon3	c.G560T	p.R187L	.	.	91	30	110	0	.	91
MIA3	375056	bcgsc.ca	37	1	222802845	222802845	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MIA3	NM_198551	exon4	c.T2283C	p.P761P	.	.	183	6	166	1	.	98
MID1	4281	hgsc.bcm.edu	37	X	10450648	10450648	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MID1	NM_001193278	exon5	c.G1038T	p.L346L	.	.	22	4	43	0	.	229
MINK1	50488	hgsc.bcm.edu	37	17	4793904	4793904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MINK1	NM_170663	exon14	c.G1440T	p.Q480H	.	.	64	4	72	0	.	943
MLL	4297	hgsc.bcm.edu;bcgsc.ca	37	11	118377325	118377325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLL	NM_001197104	exon27	c.C10718T	p.P3573L	.	.	51	4	104	0	.	1255
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36229093	36229093	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLL4	NM_014727	exon36	c.7872+1G>T	.	.	.	46	16	123	0	.	697
MLLT10	8028	hgsc.bcm.edu	37	10	21884283	21884283	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLLT10	NM_001195626	exon4	c.C319T	p.L107L	.	.	98	5	128	0	.	658
MLLT1	4298	hgsc.bcm.edu;bcgsc.ca	37	19	6222582	6222582	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLLT1	NM_005934	exon6	c.T660C	p.R220R	.	.	71	5	58	0	.	658
MMP14	4323	hgsc.bcm.edu	37	14	23314461	23314461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MMP14	NM_004995	exon9	c.T1303C	p.Y435H	.	.	49	4	40	0	.	226
MMP19	4327	hgsc.bcm.edu	37	12	56234506	56234506	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MMP19	NM_001272101	exon4	c.C465A	p.R155R	.	.	89	4	98	0	.	227
MOB3A	126308	hgsc.bcm.edu	37	19	2076903	2076903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_130807	exon4	c.G531A	p.M177I	.	.	147	6	99	0	.	.
MOCOS	55034	hgsc.bcm.edu;bcgsc.ca	37	18	33775243	33775243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MOCOS	NM_017947	exon2	c.G166T	p.G56C	.	.	99	4	92	0	.	91
MROH1	727957	bcgsc.ca	37	8	145235181	145235181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001099280	exon6	c.A401G	p.H134R	.	.	59	4	83	2	.	.
MRPL39	54148	bcgsc.ca	37	21	26978920	26978920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRPL39	NM_017446	exon2	c.A121G	p.T41A	.	.	71	4	99	1	.	90
MRPS16	51021	ucsc.edu	37	10	75008873	75008873	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRPS16	.	.	.	.	.	.	25	1	24	0	.	90
MRPS28	28957	hgsc.bcm.edu	37	8	80942312	80942312	+	Silent	SNP	G	G	T	rs147337080	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRPS28	NM_014018	exon1	c.C172A	p.R58R	.	.	89	4	58	0	G|0.997;A|0.003	90
MRPS5	64969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95756225	95756225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRPS5	NM_031902	exon11	c.G974A	p.R325Q	.	.	87	24	122	0	.	92
MRS2	57380	bcgsc.ca	37	6	24405469	24405469	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRS2	NM_020662	exon2	c.G264T	p.V88V	.	.	87	4	100	1	.	68
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10603489	10603489	+	Missense_Mutation	SNP	G	G	A	rs199557491		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRVI1	NM_130385	exon19	c.C2285T	p.A762V	.	.	76	33	126	0	G|0.999;A|0.001	25
MS4A13	503497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60292725	60292725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MS4A13	NM_001012417	exon5	c.A232T	p.I78F	.	.	373	126	408	0	.	90
MSI1	4440	bcgsc.ca	37	12	120795696	120795696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MSI1	NM_002442	exon8	c.G457T	p.G153W	.	.	85	5	140	1	.	577
MTDH	92140	hgsc.bcm.edu	37	8	98656988	98656988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MTDH	NM_178812	exon1	c.C254T	p.P85L	.	.	32	4	28	0	.	91
MTOR	2475	hgsc.bcm.edu	37	1	11186822	11186822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MTOR	NM_004958	exon46	c.C6383T	p.P2128L	.	.	93	4	125	0	.	1439
MTR	4548	bcgsc.ca	37	1	236995270	236995270	+	Silent	SNP	A	A	G	rs141861479	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MTR	NM_000254	exon13	c.A1080G	p.L360L	.	.	174	6	212	0	A|0.999;G|0.001	92
MUC17	140453	hgsc.bcm.edu	37	7	100675798	100675798	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MUC17	NM_001040105	exon3	c.T1101C	p.T367T	.	.	83	4	70	0	.	95
MUC6	4588	bcgsc.ca	37	11	1016779	1016779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MUC6	NM_005961	exon31	c.C6022T	p.H2008Y	.	.	3390	133	3702	91	.	23
MYBBP1A	10514	hgsc.bcm.edu	37	17	4458458	4458458	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYBBP1A	NM_014520	exon1	c.G162A	p.T54T	.	.	77	4	82	0	.	92
MYBPC1	4604	hgsc.bcm.edu	37	12	102067212	102067212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYBPC1	NM_206819	exon25	c.C2621T	p.P874L	.	.	92	4	113	0	.	94
MYH14	79784	hgsc.bcm.edu	37	19	50794172	50794172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH14	NM_001145809	exon36	c.A4994G	p.E1665G	.	.	99	4	151	0	.	23
MYH14	79784	hgsc.bcm.edu;bcgsc.ca	37	19	50792838	50792838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH14	NM_001145809	exon35	c.A4898G	p.Q1633R	.	.	70	4	82	0	.	23
MYH6	4624	hgsc.bcm.edu	37	14	23866382	23866382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH6	NM_002471	exon17	c.C2047A	p.P683T	.	.	93	4	110	0	.	94
MYH7	4625	bcgsc.ca	37	14	23902852	23902852	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH7	NM_000257	exon3	c.T90C	p.P30P	.	.	92	5	111	1	.	94
MYH7	4625	hgsc.bcm.edu	37	14	23890225	23890225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH7	NM_000257	exon26	c.G3278T	p.R1093M	.	.	100	5	160	0	.	94
MYO18A	399687	hgsc.bcm.edu	37	17	27438814	27438814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO18A	NM_078471	exon16	c.T2666C	p.V889A	.	.	68	4	81	0	.	22
MYO18B	84700	bcgsc.ca	37	22	26299624	26299624	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO18B	NM_032608	exon31	c.G4974A	p.L1658L	.	.	102	5	162	0	.	142
MYO19	80179	broad.mit.edu;bcgsc.ca	37	17	34869300	34869300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO19	NM_001163735	exon12	c.A866G	p.D289G	.	.	234	7	263	0	.	23
MYO6	4646	hgsc.bcm.edu;bcgsc.ca	37	6	76542624	76542624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO6	NM_004999	exon6	c.T457A	p.S153T	.	.	84	4	109	0	.	92
MYO9A	4649	bcgsc.ca	37	15	72338429	72338429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO9A	NM_006901	exon2	c.A476G	p.E159G	.	.	125	5	162	1	.	93
NACAD	23148	hgsc.bcm.edu	37	7	45125286	45125286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001146334	exon2	c.T493C	p.S165P	.	.	80	4	78	0	.	.
NADK	65220	hgsc.bcm.edu	37	1	1685559	1685559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NADK	NM_001198994	exon12	c.G1467T	p.M489I	.	.	117	4	190	0	.	44
NADKD1	133686	hgsc.bcm.edu	37	5	36217963	36217963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NADKD1	NM_001085411	exon6	c.G668T	p.R223M	.	.	103	5	164	0	.	92
NAV1	89796	bcgsc.ca	37	1	201789020	201789020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NAV1	NM_020443	exon30	c.G5594T	p.R1865L	.	.	124	5	152	0	.	228
NAV3	89795	hgsc.bcm.edu	37	12	78513068	78513068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NAV3	NM_014903	exon15	c.G3092T	p.G1031V	.	.	83	4	98	0	.	279
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36239245	36239245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NBEA	NM_015678	exon55	c.G8323A	p.V2775I	.	.	177	53	282	0	.	144
NBEAL2	23218	hgsc.bcm.edu;bcgsc.ca	37	3	47046023	47046023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NBEAL2	NM_015175	exon38	c.G6237T	p.L2079F	.	.	74	4	139	0	.	69
NBPF10	100132406	broad.mit.edu	37	1	145299805	145299805	+	Missense_Mutation	SNP	A	A	C	rs61814629		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001039703	exon6	c.A854C	p.E285A	.	.	167	7	142	2	A|0.999;G|0.001	.
NBPF10	100132406	broad.mit.edu	37	1	145299809	145299809	+	Missense_Mutation	SNP	G	G	A	rs61814630		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001039703	exon6	c.G858A	p.M286I	.	.	166	8	143	2	.	.
NCK2	8440	hgsc.bcm.edu	37	2	106498261	106498261	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCK2	NM_001004720	exon3	c.G704A	p.W235X	.	.	91	5	118	0	.	415
NCOA3	8202	broad.mit.edu;bcgsc.ca	37	20	46265318	46265320	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	AAG	AAG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCOA3	NM_001174088	exon12	c.2218_2220del	p.740_740del	.	.	205	28	197	0	.	229
NCOA3	8202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46264392	46264392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCOA3	NM_001174088	exon11	c.T1469G	p.I490S	.	.	143	37	143	0	.	229
ND3	0	bcgsc.ca	37	MT	10197	10197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	ENST00000361227	exon1	c.G139A	p.A47T	.	.	11	11	10	0	.	.
NDEL1	81565	hgsc.bcm.edu;bcgsc.ca	37	17	8347657	8347657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDEL1	NM_001025579	exon2	c.C68A	p.S23Y	.	.	88	4	120	0	.	90
NDST1	3340	hgsc.bcm.edu	37	5	149927823	149927823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDST1	NM_001543	exon12	c.T2189C	p.F730S	.	.	104	5	133	0	.	136
NDUFAF1	51103	hgsc.bcm.edu;bcgsc.ca	37	15	41687071	41687071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDUFAF1	NM_016013	exon3	c.T745C	p.W249R	.	.	71	4	95	0	.	91
NDUFV3	4731	bcgsc.ca	37	21	44323899	44323899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDUFV3	NM_021075	exon3	c.G777T	p.L259F	.	.	108	4	142	0	.	92
NEB	4703	bcgsc.ca	37	2	152580789	152580789	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEB	NM_004543	exon8	c.C597A	p.T199T	.	.	229	8	256	0	.	145
NEB	4703	broad.mit.edu	37	2	152512694	152512694	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEB	NM_004543	exon49	c.C6468A	p.T2156T	.	.	516	8	575	0	.	145
NEBL	10529	hgsc.bcm.edu	37	10	21104614	21104614	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEBL	NM_006393	exon22	c.C2181A	p.T727T	.	.	92	4	139	0	.	92
NEDD4L	23327	hgsc.bcm.edu;bcgsc.ca	37	18	56002763	56002763	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEDD4L	NM_001144967	exon13	c.A1119G	p.E373E	.	.	115	5	110	0	.	658
NEIL1	79661	hgsc.bcm.edu;bcgsc.ca	37	15	75647049	75647049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEIL1	NM_001256552	exon9	c.T1250C	p.L417P	.	.	66	4	82	0	.	659
NEU4	129807	mdanderson.org	37	2	242755838	242755838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEU4	NM_001167599	exon2	c.C196A	p.R66S	.	.	10	2	23	0	.	44
NF1	4763	bcgsc.ca	37	17	29533369	29533369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NF1	NM_001128147	exon12	c.C1372A	p.P458T	.	.	230	7	309	0	.	3353
NFE2	4778	hgsc.bcm.edu	37	12	54686181	54686181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NFE2	NM_001261461	exon4	c.A1099G	p.T367A	.	.	121	5	130	0	.	226
NFX1	4799	hgsc.bcm.edu	37	9	33364038	33364038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NFX1	NM_147133	exon20	c.G2904T	p.E968D	.	.	136	5	173	0	.	91
NGLY1	55768	hgsc.bcm.edu	37	3	25778936	25778936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NGLY1	NM_018297	exon6	c.C892A	p.P298T	.	.	45	4	52	0	.	135
NHSL1	57224	hgsc.bcm.edu	37	6	138745873	138745873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NHSL1	NM_020464	exon7	c.C4178T	p.P1393L	.	.	105	5	136	0	.	68
NID2	22795	hgsc.bcm.edu	37	14	52509008	52509008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NID2	NM_007361	exon7	c.T1640C	p.V547A	.	.	82	5	137	0	.	158
NINL	22981	hgsc.bcm.edu	37	20	25498459	25498459	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NINL	NM_025176	exon3	c.T207C	p.G69G	.	.	99	4	147	0	.	94
NIPBL	25836	broad.mit.edu	37	5	37024766	37024766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NIPBL	NM_015384	exon30	c.T5654C	p.I1885T	.	.	854	10	771	0	.	293
NLGN3	54413	bcgsc.ca	37	X	70387073	70387073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NLGN3	NM_181303	exon7	c.C1126T	p.P376S	.	.	182	6	273	1	.	131
NLRC5	84166	hgsc.bcm.edu	37	16	57113154	57113154	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NLRC5	NM_032206	exon44	c.T5187C	p.A1729A	.	.	100	4	141	0	.	159
NLRP1	22861	bcgsc.ca	37	17	5418322	5418322	+	Silent	SNP	G	G	T	rs202212177	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NLRP1	NM_033004	exon17	c.C4174A	p.R1392R	.	.	67	5	113	0	.	274
NLRP14	338323	hgsc.bcm.edu	37	11	7091661	7091661	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NLRP14	NM_176822	exon11	c.T3120C	p.S1040S	.	.	96	4	139	0	.	295
NLRX1	79671	bcgsc.ca	37	11	119050572	119050572	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NLRX1	NM_024618	exon7	c.C1842T	p.P614P	.	.	89	5	118	0	.	92
NOD1	10392	bcgsc.ca	37	7	30492471	30492471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NOD1	NM_006092	exon6	c.A562G	p.T188A	.	.	127	6	182	1	.	229
NOL4	8715	hgsc.bcm.edu;bcgsc.ca	37	18	31523052	31523052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NOL4	NM_003787	exon9	c.A1519G	p.R507G	.	.	65	4	89	0	.	93
NOP14-AS1	317648	ucsc.edu	37	4	2940485	2940485	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	65	2	97	1	.	.
NOTCH3	4854	hgsc.bcm.edu	37	19	15281634	15281634	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NOTCH3	NM_000435	exon26	c.C4739A	p.S1580X	.	.	58	4	108	0	.	855
NPC1	4864	hgsc.bcm.edu	37	18	21120466	21120466	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NPC1	NM_000271	exon17	c.C2550A	p.I850I	.	.	69	4	114	0	.	92
NR1D1	9572	hgsc.bcm.edu	37	17	38252091	38252091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NR1D1	NM_021724	exon5	c.T854C	p.V285A	.	.	97	4	115	0	.	226
NR2C1	7181	bcgsc.ca	37	12	95445551	95445551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NR2C1	NM_001032287	exon8	c.G952T	p.G318C	.	.	129	5	190	0	.	187
NR2F2	7026	hgsc.bcm.edu	37	15	96877485	96877485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NR2F2	NM_021005	exon2	c.G623T	p.G208V	.	.	112	5	135	0	.	228
NRXN3	9369	hgsc.bcm.edu	37	14	80130289	80130289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NRXN3	NM_004796	exon14	c.A2494G	p.T832A	.	.	93	4	115	0	.	587
NSD1	64324	hgsc.bcm.edu;bcgsc.ca	37	5	176722361	176722361	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NSD1	NM_022455	exon23	c.T7992C	p.S2664S	.	.	96	5	139	0	.	188
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176722236	176722236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NSD1	NM_022455	exon23	c.A7867C	p.S2623R	.	.	110	39	151	0	.	188
NTRK2	4915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87339221	87339221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NTRK2	NM_001018065	exon8	c.C803T	p.A268V	.	.	140	35	188	0	.	1404
NTRK3	4916	hgsc.bcm.edu;bcgsc.ca	37	15	88679734	88679734	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NTRK3	NM_001243101	exon8	c.G729C	p.W243C	.	.	75	4	134	0	.	3538
NUDT5	11164	hgsc.bcm.edu;bcgsc.ca	37	10	12219892	12219892	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	NUDT5,NS,NS,-1	NUDT5	NM_014142	exon5	c.G189T	p.A63A	.	.	48	4	57	0	.	92
NUMBL	9253	hgsc.bcm.edu	37	19	41183191	41183191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	NUMBL,NS,carcinoma,+1	NUMBL	NM_004756	exon7	c.C676A	p.R226S	.	.	57	3	103	0	.	637
NUP153	9972	bcgsc.ca	37	6	17675175	17675175	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP153	NM_005124	exon5	c.T813C	p.A271A	.	.	108	5	87	0	.	637
NUP188	23511	hgsc.bcm.edu;bcgsc.ca	37	9	131765691	131765691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP188	NM_015354	exon38	c.G4392T	p.K1464N	.	.	46	4	67	0	.	207
NUP210	23225	hgsc.bcm.edu	37	3	13413453	13413453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP210	NM_024923	exon13	c.C1667T	p.P556L	.	.	94	5	130	0	.	256
NUP214	8021	hgsc.bcm.edu	37	9	134049687	134049687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP214	NM_005085	exon22	c.G3139A	p.G1047S	.	.	93	4	153	0	.	1131
NUP88	4927	hgsc.bcm.edu	37	17	5317451	5317451	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP88	NM_002532	exon3	c.C471A	p.T157T	.	.	66	4	62	0	.	204
NVL	4931	hgsc.bcm.edu	37	1	224475675	224475675	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NVL	NM_002533	exon14	c.G1596T	p.L532L	.	.	70	4	66	0	.	92
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226378371	226378371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020864	exon3	c.C506T	p.T169I	.	.	67	14	86	0	.	.
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226447056	226447056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020864	exon4	c.A923G	p.K308R	.	.	117	27	114	0	.	.
OAS1	4938	hgsc.bcm.edu;bcgsc.ca	37	12	113357204	113357204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OAS1	NM_016816	exon6	c.A1049G	p.N350S	.	.	92	5	93	0	.	70
OBFC1	79991	hgsc.bcm.edu	37	10	105652001	105652001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OBFC1	NM_024928	exon8	c.A763G	p.K255E	.	.	93	4	77	0	.	69
OBSL1	23363	hgsc.bcm.edu	37	2	220422083	220422083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OBSL1	NM_001173431	exon12	c.T4048C	p.F1350L	.	.	38	4	54	0	.	71
OCSTAMP	128506	hgsc.bcm.edu	37	20	45174433	45174433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_080721	exon2	c.T580C	p.S194P	.	.	92	5	108	0	.	.
OGDH	4967	bcgsc.ca	37	7	44714815	44714815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OGDH	NM_002541	exon8	c.A974G	p.E325G	.	.	162	5	238	2	.	228
OGDHL	55753	hgsc.bcm.edu;bcgsc.ca	37	10	50948862	50948862	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OGDHL	NM_018245	exon16	c.T2034C	p.H678H	.	.	47	4	67	0	.	69
OLFML1	283298	bcgsc.ca	37	11	7509628	7509628	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OLFML1	NM_198474	exon2	c.C400A	p.R134R	.	.	147	5	143	1	.	70
OR10A3	26496	hgsc.bcm.edu;bcgsc.ca	37	11	7960614	7960614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR10A3	NM_001003745	exon1	c.G454T	p.G152W	.	.	129	6	117	0	.	69
OR10G8	219869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	123901212	123901212	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR10G8	NM_001004464	exon1	c.A883T	p.K295X	.	.	201	63	284	0	.	92
OR13D1	286365	hgsc.bcm.edu	37	9	107457666	107457666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR13D1	NM_001004484	exon1	c.T964C	p.Y322H	.	.	90	4	137	0	.	70
OR1A2	26189	bcgsc.ca	37	17	3101529	3101529	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR1A2	NM_012352	exon1	c.C717A	p.T239T	.	.	218	6	280	0	.	70
OR2AG2	338755	broad.mit.edu;bcgsc.ca	37	11	6789972	6789972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR2AG2	NM_001004490	exon1	c.T217C	p.F73L	.	.	119	6	183	1	.	71
OR2M7	391196	bcgsc.ca	37	1	248486994	248486994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR2M7	NM_001004691	exon1	c.C877A	p.R293S	.	.	350	8	311	1	.	70
OR4F15	390649	bcgsc.ca	37	15	102358623	102358623	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR4F15	NM_001001674	exon1	c.C234A	p.A78A	.	.	205	7	260	1	.	68
OR4K14	122740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20483233	20483233	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR4K14	NM_001004712	exon1	c.G120T	p.L40L	.	.	224	78	296	0	.	115
OR52A1	23538	hgsc.bcm.edu	37	11	5173434	5173434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR52A1	NM_012375	exon1	c.A166G	p.S56G	.	.	112	5	132	0	.	114
OR5M10	390167	bcgsc.ca	37	11	56344766	56344766	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001004741	exon1	c.G432T	p.L144L	.	.	277	7	372	1	.	.
OR6C4	341418	hgsc.bcm.edu	37	12	55945361	55945361	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR6C4	NM_001005494	exon1	c.T351C	p.S117S	.	.	120	6	137	0	.	68
OR6F1	343169	hgsc.bcm.edu	37	1	247875382	247875382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR6F1	NM_001005286	exon1	c.C676A	p.L226I	.	.	97	4	95	0	.	68
OR8B12	219858	bcgsc.ca	37	11	124413440	124413440	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR8B12	NM_001005195	exon1	c.C111A	p.T37T	.	.	135	5	170	0	.	70
OR8B8	26493	hgsc.bcm.edu	37	11	124310838	124310838	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR8B8	NM_012378	exon1	c.G144A	p.L48L	.	.	84	4	148	0	.	69
OR8G5	219865	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	124134976	124134976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001005198	exon1	c.G254A	p.G85E	.	.	123	34	137	0	.	.
ORM2	5005	bcgsc.ca	37	9	117095359	117095359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ORM2	NM_000608	exon6	c.A551G	p.E184G	.	.	3118	189	4050	4	.	90
OSBPL11	114885	bcgsc.ca	37	3	125298741	125298741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OSBPL11	NM_022776	exon3	c.A377G	p.N126S	.	.	213	7	232	0	.	135
OSBPL1A	114876	hgsc.bcm.edu	37	18	21776115	21776115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	OSBPL1A,NS,carcinoma,+1	OSBPL1A	NM_080597	exon18	c.A1651G	p.S551G	.	.	38	2	41	1	.	94
OSBPL5	114879	hgsc.bcm.edu	37	11	3143580	3143580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OSBPL5	NM_145638	exon4	c.A298G	p.K100E	.	.	80	4	107	0	.	113
OSCP1	127700	hgsc.bcm.edu	37	1	36883746	36883746	+	Silent	SNP	C	C	T	rs142047873	by1000genomes	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OSCP1	NM_145047	exon10	c.G1134A	p.E378E	.	.	95	4	102	0	C|0.999;T|0.000	4
OTOR	56914	hgsc.bcm.edu	37	20	16730645	16730645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	OTOR,brain,glioma,-1	OTOR	NM_020157	exon3	c.T353C	p.V118A	.	.	62	3	89	0	.	206
OXA1L	5018	hgsc.bcm.edu;bcgsc.ca	37	14	23237290	23237290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OXA1L	NM_005015	exon3	c.G529T	p.G177W	.	.	68	4	113	0	.	204
P2RX3	5024	hgsc.bcm.edu;bcgsc.ca	37	11	57115686	57115686	+	Missense_Mutation	SNP	G	G	T	rs115850675	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P2RX3	NM_002559	exon5	c.G434T	p.R145L	.	.	68	5	57	0	G|0.996;A|0.004	68
P2RX4	5025	hgsc.bcm.edu	37	12	121648016	121648016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P2RX4	NM_001261398	exon1	c.A49G	p.T17A	.	.	93	4	72	0	.	68
P2RY2	5029	hgsc.bcm.edu	37	11	72946264	72946264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P2RY2	NM_176071	exon3	c.G1060T	p.G354C	.	.	94	4	127	0	.	503
P4HB	5034	hgsc.bcm.edu;bcgsc.ca	37	17	79817083	79817083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P4HB	NM_000918	exon2	c.A326G	p.D109G	.	.	82	6	116	0	.	46
PABPC1	26986	bcgsc.ca	37	8	101730010	101730010	+	Missense_Mutation	SNP	T	T	C	rs201501488	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PABPC1	NM_002568	exon3	c.A494G	p.D165G	.	.	483	14	496	3	T|0.984;C|0.016	68
PABPC1	26986	bcgsc.ca	37	8	101730043	101730043	+	Missense_Mutation	SNP	G	G	C	rs113614781	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PABPC1	NM_002568	exon3	c.C461G	p.A154G	.	.	644	20	633	5	G|0.839;C|0.161	68
PABPC1	26986	bcgsc.ca	37	8	101730064	101730064	+	Missense_Mutation	SNP	G	G	A	rs72681442	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PABPC1	NM_002568	exon3	c.C440T	p.T147M	.	.	670	20	654	5	G|0.901;A|0.099	68
PABPC1	26986	bcgsc.ca	37	8	101730073	101730073	+	Missense_Mutation	SNP	T	T	C	rs72681443	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PABPC1	NM_002568	exon3	c.A431G	p.H144R	.	.	671	20	644	5	T|0.853;C|0.147	68
PABPN1	8106	hgsc.bcm.edu	37	14	23790983	23790983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PABPN1	NM_004643	exon1	c.C305T	p.P102L	.	.	102	5	176	0	.	70
PACSIN3	29763	hgsc.bcm.edu	37	11	47199984	47199984	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PACSIN3	NM_016223	exon10	c.C1092A	p.T364T	.	.	87	4	155	0	.	68
PADI4	23569	hgsc.bcm.edu;bcgsc.ca	37	1	17674451	17674451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PADI4	NM_012387	exon10	c.G1063T	p.G355C	.	.	65	4	119	0	.	70
PAK6	56924	hgsc.bcm.edu	37	15	40565184	40565184	+	Missense_Mutation	SNP	A	A	G	rs140245743		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAK6	NM_001128629	exon6	c.A1474G	p.I492V	.	.	70	4	66	0	A|1.000;G|0.000	996
PALD1	27143	bcgsc.ca	37	10	72292825	72292825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_014431	exon7	c.G869T	p.R290L	.	.	256	8	343	0	.	.
PALLD	23022	bcgsc.ca	37	4	169846120	169846120	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PALLD	NM_001166108	exon20	c.C3249T	p.Y1083Y	.	.	129	5	166	0	.	94
PALM2-AKAP2	445815	hgsc.bcm.edu;bcgsc.ca	37	9	112899145	112899145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PALM2-AKAP2	NM_007203	exon8	c.A1321G	p.R441G	.	.	93	4	130	0	.	475
PALMD	54873	hgsc.bcm.edu	37	1	100154877	100154877	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PALMD	NM_017734	exon7	c.C1061A	p.S354X	.	.	91	4	92	0	.	71
PAN2	9924	bcgsc.ca	37	12	56717695	56717695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAN2	NM_001127460	exon14	c.A2080G	p.K694E	.	.	134	5	89	0	.	702
PANK4	55229	hgsc.bcm.edu	37	1	2451799	2451799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PANK4	NM_018216	exon5	c.A661G	p.T221A	.	.	82	4	104	0	.	158
PAPLN	89932	hgsc.bcm.edu	37	14	73720573	73720573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAPLN	NM_173462	exon11	c.G1125T	p.E375D	.	.	94	4	145	0	.	70
PAQR5	54852	bcgsc.ca	37	15	69696003	69696003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAQR5	NM_001104554	exon9	c.A835G	p.R279G	.	.	147	6	178	1	.	70
PARD3	56288	bcgsc.ca	37	10	34739296	34739296	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARD3	NM_001184788	exon5	c.T663C	p.S221S	.	.	153	5	196	0	.	92
PARD3B	117583	hgsc.bcm.edu	37	2	205912377	205912377	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARD3B	NM_205863	exon4	c.A468G	p.S156S	.	.	75	4	130	0	.	140
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419215	122419215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARP14	NM_017554	exon6	c.A1814G	p.N605S	.	.	79	4	92	0	.	525
PARP16	54956	hgsc.bcm.edu	37	15	65578651	65578651	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARP16	NM_017851	exon1	c.G114T	p.S38S	.	.	78	4	68	0	.	522
PARVB	29780	hgsc.bcm.edu	37	22	44564512	44564512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARVB	NM_001003828	exon14	c.T1148C	p.L383P	.	.	94	4	177	0	.	226
PAWR	5074	hgsc.bcm.edu;bcgsc.ca	37	12	80007382	80007382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAWR	NM_002583	exon4	c.C656A	p.P219H	.	.	98	6	137	0	.	90
PAX3	5077	hgsc.bcm.edu	37	2	223066865	223066865	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAX3	NM_181457	exon8	c.C1218A	p.P406P	.	.	81	4	115	0	.	1821
PAXIP1	22976	hgsc.bcm.edu;bcgsc.ca	37	7	154738503	154738503	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAXIP1	NM_007349	exon18	c.A2943G	p.T981T	.	.	49	4	44	0	.	228
PCDH20	64881	hgsc.bcm.edu	37	13	61987996	61987996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDH20	NM_022843	exon2	c.G236T	p.G79V	.	.	83	4	102	0	.	581
PCDHAC2	56134	hgsc.bcm.edu;bcgsc.ca	37	5	140347691	140347691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHAC2	NM_031883	exon1	c.C1340A	p.P447Q	.	.	87	5	151	0	.	26
PCDHGA2	56113	hgsc.bcm.edu	37	5	140719523	140719523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGA2	NM_018915	exon1	c.A985G	p.T329A	.	.	98	4	149	0	.	71
PCDHGA6	56109	hgsc.bcm.edu;bcgsc.ca	37	5	140754660	140754660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGA6	NM_018919	exon1	c.T1010C	p.I337T	.	.	98	6	151	0	.	67
PCDHGA7	56108	hgsc.bcm.edu	37	5	140762724	140762724	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_032087	exon1	c.T258C	p.T86T	.	.	97	4	160	0	.	.
PCDHGB4	8641	hgsc.bcm.edu	37	5	140768682	140768682	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_032098	exon1	c.G1231T	p.E411X	.	.	83	4	92	0	.	.
PCDHGC3	5098	mdanderson.org	37	5	140857266	140857266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGC3	NM_032402	exon1	c.A1583G	p.E528G	.	.	16	3	23	0	.	24
PCDHGC5	56097	ucsc.edu;bcgsc.ca	37	5	140871104	140871104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGC5	NM_018929	exon1	c.C2297A	p.P766H	.	.	42	4	99	0	.	25
PCSK1	5122	broad.mit.edu	37	5	95728928	95728928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCSK1	NM_000439	exon14	c.C2039A	p.P680Q	.	.	708	9	971	0	.	92
PCSK2	5126	hgsc.bcm.edu	37	20	17462588	17462588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCSK2	NM_002594	exon12	c.C1790T	p.A597V	.	.	75	4	126	0	.	157
PCSK5	5125	hgsc.bcm.edu	37	9	78749051	78749051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCSK5	NM_006200	exon10	c.A1235G	p.Q412R	.	.	72	4	73	0	.	93
PDE1C	5137	bcgsc.ca	37	7	32109944	32109944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDE1C	NM_001191056	exon1	c.C62A	p.P21Q	.	.	207	6	260	0	.	94
PDE4DIP	9659	bcgsc.ca	37	1	144859918	144859918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDE4DIP	NM_014644	exon38	c.G6166T	p.G2056W	.	.	142	5	231	1	.	663
PDE6A	5145	hgsc.bcm.edu;bcgsc.ca	37	5	149278051	149278051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDE6A	NM_000440	exon10	c.G1282T	p.G428C	.	.	57	4	52	0	.	92
PDE6C	5146	bcgsc.ca	37	10	95400279	95400279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDE6C	NM_006204	exon13	c.T1702C	p.F568L	.	.	106	5	147	2	.	94
PDS5A	23244	broad.mit.edu;bcgsc.ca	37	4	39839583	39839583	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001100399	exon32	c.G3903A	p.V1301V	.	.	281	8	296	1	.	.
PDXDC1	23042	hgsc.bcm.edu;bcgsc.ca	37	16	15127208	15127208	+	Silent	SNP	C	C	A	rs151129728	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDXDC1	NM_015027	exon19	c.C1764A	p.L588L	.	.	72	4	86	0	C|1.000;T|0.000	91
PDZD2	23037	hgsc.bcm.edu	37	5	32098708	32098708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDZD2	NM_178140	exon22	c.C8186A	p.S2729Y	.	.	65	4	67	0	.	563
PDZD8	118987	broad.mit.edu	37	10	119043558	119043558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDZD8	NM_173791	exon5	c.A2686G	p.R896G	.	.	454	5	431	1	.	90
PDZRN3	23024	bcgsc.ca	37	3	73433669	73433669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDZRN3	NM_015009	exon10	c.A2048G	p.K683R	.	.	70	4	140	0	.	232
PEX7	5191	hgsc.bcm.edu	37	6	137193356	137193356	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PEX7	NM_000288	exon8	c.T768C	p.S256S	.	.	92	5	100	0	.	90
PGD	5226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10471547	10471547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PGD	NM_002631	exon7	c.A592T	p.I198F	.	.	134	48	175	0	.	91
PGM1	5236	hgsc.bcm.edu	37	1	64114221	64114221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PGM1	NM_001172818	exon8	c.G1232T	p.W411L	.	.	59	4	70	0	.	228
PGM5	5239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71144546	71144546	+	Missense_Mutation	SNP	C	C	G	rs190312271	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PGM5	NM_021965	exon11	c.C1678G	p.R560G	.	.	104	34	140	1	C|0.999;T|0.001	92
PHC1	1911	hgsc.bcm.edu	37	12	9086863	9086863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHC1	NM_004426	exon10	c.A2042G	p.E681G	.	.	84	4	57	0	.	154
PHF19	26147	hgsc.bcm.edu;bcgsc.ca	37	9	123636996	123636996	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHF19	NM_015651	exon2	c.A24G	p.P8P	.	.	63	4	58	0	.	136
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71915637	71915637	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHKA1	NM_001172436	exon4	c.G375A	p.V125V	.	.	886	223	1273	1	.	134
PHLDB2	90102	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111604197	111604197	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHLDB2	NM_001134437	exon3	c.C1354T	p.L452L	.	.	66	18	73	1	.	96
PHLDB3	653583	hgsc.bcm.edu	37	19	43998856	43998856	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHLDB3	NM_198850	exon9	c.C1147T	p.Q383X	.	.	96	4	157	0	.	68
PHRF1	57661	hgsc.bcm.edu	37	11	607103	607103	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHRF1	NM_020901	exon14	c.C1644A	p.S548S	.	.	85	4	93	0	.	22
PIANP	196500	hgsc.bcm.edu	37	12	6804636	6804636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001244014	exon5	c.A787G	p.M263V	.	.	84	4	135	0	.	.
PICALM	8301	hgsc.bcm.edu	37	11	85701369	85701369	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PICALM	NM_007166	exon13	c.T1332C	p.S444S	.	.	100	4	131	0	.	659
PICK1	9463	hgsc.bcm.edu	37	22	38465060	38465060	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PICK1	NM_012407	exon6	c.C370A	p.R124R	.	.	92	4	111	0	.	226
PIGO	84720	bcgsc.ca	37	9	35094307	35094307	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PIGO	NM_001201484	exon4	c.T561C	p.P187P	.	.	94	4	92	1	.	290
PIKFYVE	200576	bcgsc.ca	37	2	209150545	209150545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PIKFYVE	NM_015040	exon6	c.T709C	p.S237P	.	.	184	6	221	0	.	583
PIP4K2A	5305	hgsc.bcm.edu	37	10	22880591	22880591	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PIP4K2A	NM_005028	exon4	c.C459A	p.A153A	.	.	120	6	125	0	.	665
PIWIL3	440822	hgsc.bcm.edu	37	22	25153957	25153957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PIWIL3	NM_001008496	exon4	c.G273T	p.Q91H	.	.	122	5	156	0	.	93
PIWIL4	143689	bcgsc.ca	37	11	94354095	94354095	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PIWIL4	NM_152431	exon20	c.G2496T	p.L832L	.	.	85	6	114	0	.	91
PKD1L1	168507	bcgsc.ca	37	7	47944859	47944859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon11	c.T1586C	p.V529A	.	.	281	7	391	2	.	145
PKD1L1	168507	hgsc.bcm.edu	37	7	47870945	47870945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon42	c.A6343G	p.S2115G	.	.	92	4	129	0	.	145
PKD1L1	168507	hgsc.bcm.edu	37	7	47874578	47874578	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon39	c.C6114A	p.T2038T	.	.	84	4	109	0	.	145
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47898327	47898327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon27	c.A4306G	p.K1436E	.	.	77	4	80	0	.	145
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47947753	47947753	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon9	c.C1323A	p.A441A	.	.	75	4	75	0	.	145
PKHD1L1	93035	bcgsc.ca	37	8	110523062	110523062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKHD1L1	NM_177531	exon71	c.T11452C	p.F3818L	.	.	214	7	232	2	.	145
PKHD1L1	93035	hgsc.bcm.edu	37	8	110457403	110457403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKHD1L1	NM_177531	exon38	c.G5305T	p.G1769X	.	.	59	4	62	0	.	145
PKNOX2	63876	broad.mit.edu;bcgsc.ca	37	11	125280755	125280755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKNOX2	NM_022062	exon9	c.C799A	p.Q267K	.	.	126	5	124	0	.	93
PLA2G2F	64600	hgsc.bcm.edu	37	1	20466705	20466705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLA2G2F	NM_022819	exon2	c.G163A	p.G55S	.	.	64	4	108	0	.	91
PLA2G4C	8605	hgsc.bcm.edu	37	19	48609797	48609797	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLA2G4C	NM_001159322	exon2	c.C51A	p.T17T	.	.	121	5	200	0	.	92
PLA2G6	8398	hgsc.bcm.edu	37	22	38536052	38536052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLA2G6	NM_003560	exon5	c.G734T	p.R245L	.	.	73	4	73	0	.	91
PLAU	5328	hgsc.bcm.edu	37	10	75671984	75671984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLAU	NM_002658	exon4	c.T97C	p.C33R	.	.	93	4	94	0	.	118
PLCXD2	257068	hgsc.bcm.edu	37	3	111432801	111432801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLCXD2	NM_001185106	exon3	c.C692A	p.P231Q	.	.	52	4	98	0	.	227
PLEC	5339	hgsc.bcm.edu	37	8	144996328	144996328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEC	NM_201380	exon32	c.A8072G	p.E2691G	.	.	48	4	50	0	.	141
PLEK	5341	hgsc.bcm.edu;bcgsc.ca	37	2	68607861	68607861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEK	NM_002664	exon3	c.T205C	p.F69L	.	.	95	5	111	0	.	91
PLEKHA5	54477	hgsc.bcm.edu	37	12	19489449	19489449	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHA5	NM_001256470	exon21	c.G2449T	p.E817X	.	.	87	4	72	0	.	227
PLEKHD1	400224	hgsc.bcm.edu	37	14	69967627	69967627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHD1	NM_001161498	exon4	c.A373G	p.T125A	.	.	60	4	64	0	.	68
PLEKHG1	57480	hgsc.bcm.edu;bcgsc.ca	37	6	151152098	151152098	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHG1	NM_001029884	exon16	c.A1851G	p.T617T	.	.	62	4	114	0	.	92
PLEKHG2	64857	hgsc.bcm.edu	37	19	39913584	39913584	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHG2	NM_022835	exon18	c.C1890T	p.P630P	.	.	94	4	141	0	.	274
PLXNB1	5364	hgsc.bcm.edu	37	3	48465517	48465517	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB1	NM_001130082	exon3	c.G504A	p.V168V	.	.	88	4	91	0	.	293
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50720691	50720691	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB2	NM_012401	exon19	c.G3039A	p.R1013R	.	.	90	20	122	0	.	211
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153032892	153032892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB3	NM_001163257	exon4	c.G679T	p.A227S	.	.	66	10	50	0	.	130
PLXND1	23129	hgsc.bcm.edu	37	3	129279245	129279245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXND1	NM_015103	exon31	c.G5061C	p.K1687N	.	.	117	5	197	0	.	90
PMAIP1	5366	hgsc.bcm.edu	37	18	57569926	57569926	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PMAIP1	NM_021127	exon2	c.C106T	p.L36L	.	.	79	4	82	0	.	658
PMFBP1	83449	hgsc.bcm.edu	37	16	72163129	72163129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PMFBP1	NM_031293	exon13	c.A1786G	p.R596G	.	.	84	4	103	0	.	92
PMFBP1	83449	hgsc.bcm.edu	37	16	72184647	72184647	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PMFBP1	NM_031293	exon5	c.T496C	p.L166L	.	.	94	4	111	0	.	92
PML	5371	hgsc.bcm.edu	37	15	74327563	74327563	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PML	NM_033239	exon8	c.C1761A	p.S587S	.	.	94	4	159	0	.	1083
PNLIPRP2	5408	bcgsc.ca	37	10	118383592	118383592	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PNLIPRP2	.	.	.	.	.	.	65	4	90	0	.	67
PNPLA8	50640	bcgsc.ca	37	7	108142948	108142948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PNPLA8	NM_001256008	exon4	c.G1345T	p.G449C	.	.	135	6	108	1	.	135
POLB	5423	hgsc.bcm.edu	37	8	42214709	42214709	+	Missense_Mutation	SNP	A	A	G	rs200554507		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POLB	NM_002690	exon8	c.A445G	p.R149G	.	.	99	4	181	0	A|0.999;G|0.001	1084
POLK	51426	bcgsc.ca	37	5	74872612	74872612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POLK	NM_016218	exon6	c.A548G	p.E183G	.	.	394	10	507	0	.	229
POLR2I	5438	hgsc.bcm.edu;bcgsc.ca	37	19	36605106	36605106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POLR2I	NM_006233	exon4	c.C236A	p.P79Q	.	.	123	7	129	0	.	90
POPDC2	64091	hgsc.bcm.edu;bcgsc.ca	37	3	119378819	119378819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POPDC2	NM_022135	exon1	c.A452G	p.E151G	.	.	76	5	96	0	.	90
POU4F1	5457	hgsc.bcm.edu	37	13	79175920	79175920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POU4F1	NM_006237	exon2	c.A890G	p.K297R	.	.	91	4	126	0	.	515
PPFIA3	8541	broad.mit.edu;bcgsc.ca	37	19	49636569	49636569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPFIA3	NM_003660	exon9	c.G1102A	p.A368T	.	.	163	27	155	1	.	226
PPFIA3	8541	hgsc.bcm.edu	37	19	49632641	49632641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPFIA3	NM_003660	exon5	c.G512T	p.R171L	.	.	112	4	133	0	.	226
PPM1H	57460	bcgsc.ca	37	12	63328356	63328356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPM1H	NM_020700	exon1	c.T161C	p.V54A	.	.	69	6	122	3	.	637
PPM1N	147699	hgsc.bcm.edu	37	19	46003767	46003767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001080401	exon3	c.C1111A	p.L371M	.	.	91	4	108	0	.	.
PPOX	5498	hgsc.bcm.edu	37	1	161138329	161138329	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPOX	NM_000309	exon6	c.C579A	p.T193T	.	.	94	4	106	0	.	91
PPP4R1	9989	hgsc.bcm.edu;bcgsc.ca	37	18	9557375	9557375	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPP4R1	NM_001042388	exon15	c.A2034G	p.K678K	.	.	78	4	94	0	.	227
PRAMEF19	645414	broad.mit.edu;bcgsc.ca	37	1	13475005	13475005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001099790	exon3	c.G1124A	p.R375H	.	.	909	227	1324	1	.	.
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69104651	69104651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PREX2	NM_024870	exon37	c.G4495A	p.A1499T	.	.	68	17	73	0	.	390
PRF1	5551	hgsc.bcm.edu;bcgsc.ca	37	10	72357906	72357906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRF1	NM_001083116	exon3	c.G1571T	p.R524M	.	.	79	6	88	0	.	578
PRKCH	5583	hgsc.bcm.edu;bcgsc.ca	37	14	61920071	61920071	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKCH	NM_006255	exon7	c.G960T	p.S320S	.	.	112	5	114	0	.	1063
PRKD1	5587	hgsc.bcm.edu;bcgsc.ca	37	14	30068321	30068321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKD1	NM_002742	exon15	c.C2078T	p.A693V	.	.	70	4	101	0	.	1534
PRKDC	5591	bcgsc.ca	37	8	48710835	48710835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKDC	.	.	.	.	.	.	200	6	201	0	.	1515
PRKDC	5591	hgsc.bcm.edu	37	8	48707064	48707064	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKDC	NM_001081640	exon75	c.10458-2A>T	.	.	.	73	4	81	0	.	1515
PROC	5624	bcgsc.ca	37	2	128183805	128183805	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PROC	NM_000312	exon7	c.678+2T>C	.	.	.	154	7	250	2	.	90
PROC	5624	hgsc.bcm.edu	37	2	128186178	128186178	+	Silent	SNP	C	C	A	rs121918141	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PROC	NM_000312	exon9	c.C1042A	p.R348R	.	.	67	4	131	0	.	90
PROM2	150696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95950732	95950732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PROM2	NM_001165977	exon15	c.C1744T	p.R582W	.	.	136	46	199	1	.	91
PRPF19	27339	hgsc.bcm.edu	37	11	60666657	60666657	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRPF19	NM_014502	exon11	c.C948A	p.A316A	.	.	77	4	111	0	.	91
PRPF4	9128	bcgsc.ca	37	9	116038905	116038905	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRPF4	NM_004697	exon2	c.A108G	p.E36E	.	.	200	6	315	1	.	93
PRPF4	9128	hgsc.bcm.edu	37	9	116053881	116053881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRPF4	NM_004697	exon14	c.G1510A	p.G504R	.	.	78	4	135	0	.	93
PRPF8	10594	bcgsc.ca	37	17	1579562	1579562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRPF8	NM_006445	exon17	c.T2491C	p.S831P	.	.	86	4	83	1	.	525
PRR14L	253143	bcgsc.ca	37	22	32109025	32109025	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRR14L	NM_173566	exon4	c.C4800A	p.P1600P	.	.	137	5	182	0	.	91
PRR14L	253143	hgsc.bcm.edu	37	22	32084215	32084215	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRR14L	NM_173566	exon9	c.6108-2A>G	.	.	.	80	4	100	0	.	91
PSAP	5660	hgsc.bcm.edu	37	10	73585601	73585601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSAP	NM_002778	exon7	c.T770C	p.M257T	.	.	88	4	102	0	.	91
PSD2	84249	hgsc.bcm.edu;bcgsc.ca	37	5	139189371	139189371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSD2	NM_032289	exon2	c.C346A	p.P116T	.	.	113	5	64	0	.	91
PSG9	5678	hgsc.bcm.edu	37	19	43766182	43766182	+	Missense_Mutation	SNP	C	C	A	rs149244305	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PSG9,arm,malignant_melanoma,0	PSG9	NM_002784	exon3	c.G539T	p.W180L	.	.	122	4	242	0	.	92
PSMA4	5685	broad.mit.edu	37	15	78841155	78841155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSMA4	NM_001102667	exon9	c.G655C	p.E219Q	.	.	329	7	435	0	.	90
PSMG1	8624	hgsc.bcm.edu;bcgsc.ca	37	21	40553799	40553799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSMG1	NM_203433	exon2	c.T140C	p.V47A	.	.	89	6	94	0	.	68
PTK2	5747	hgsc.bcm.edu;bcgsc.ca	37	8	141753415	141753415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTK2	NM_005607	exon20	c.G1715T	p.R572L	.	.	91	4	76	0	.	1517
PTPDC1	138639	bcgsc.ca	37	9	96827014	96827014	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPDC1	.	.	.	.	.	.	46	4	78	0	.	227
PTPN13	5783	hgsc.bcm.edu	37	4	87690933	87690933	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPN13	NM_080685	exon29	c.G4516T	p.E1506X	.	.	93	4	81	0	.	230
PTPN21	11099	hgsc.bcm.edu;bcgsc.ca	37	14	88974267	88974267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPN21	NM_007039	exon4	c.G448A	p.A150T	.	.	79	4	95	0	.	230
PTPRD	5789	bcgsc.ca	37	9	8524950	8524950	+	Silent	SNP	G	G	T	rs201210585	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRD	NM_130392	exon7	c.C654A	p.S218S	.	.	50	5	90	0	G|0.999;A|0.001	912
PTPRF	5792	hgsc.bcm.edu;bcgsc.ca	37	1	44083444	44083444	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRF	NM_002840	exon25	c.C4233A	p.I1411I	.	.	116	6	144	0	.	232
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8378411	8378411	+	Missense_Mutation	SNP	G	G	T	rs202020478	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRM	NM_001105244	exon27	c.G3611T	p.R1204L	.	.	87	4	156	0	G|0.999;A|0.001	228
PTPRN2	5799	hgsc.bcm.edu	37	7	157959974	157959974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRN2	NM_130843	exon6	c.C559A	p.R187S	.	.	95	5	71	0	.	295
PTPRS	5802	hgsc.bcm.edu;bcgsc.ca	37	19	5208037	5208037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRS	NM_002850	exon37	c.A5674G	p.T1892A	.	.	52	4	63	0	.	357
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5216748	5216748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRS	NM_002850	exon26	c.C4079T	p.P1360L	.	.	369	69	460	0	.	357
PTPRT	11122	bcgsc.ca	37	20	41306603	41306603	+	Silent	SNP	G	G	T	rs190523853	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRT	NM_007050	exon7	c.C1056A	p.P352P	.	.	247	7	286	1	G|0.999;A|0.000	664
PTPRT	11122	bcgsc.ca	37	20	41306607	41306607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRT	NM_007050	exon7	c.A1052G	p.D351G	.	.	250	9	290	1	.	664
PTRF	284119	bcgsc.ca	37	17	40556750	40556750	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTRF	NM_012232	exon2	c.C1128A	p.T376T	.	.	46	4	51	0	.	153
PTS	5805	hgsc.bcm.edu;bcgsc.ca	37	11	112104184	112104184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTS	NM_000317	exon6	c.G344T	p.W115L	.	.	93	5	114	0	.	90
PUF60	22827	hgsc.bcm.edu;bcgsc.ca	37	8	144904074	144904074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_078480	exon3	c.T121C	p.S41P	.	.	61	4	61	0	.	.
PUS7L	83448	broad.mit.edu	37	12	44148315	44148315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PUS7L	NM_001098614	exon2	c.T734C	p.V245A	.	.	1118	10	794	5	.	91
QTRTD1	79691	hgsc.bcm.edu	37	3	113789666	113789666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	QTRTD1	NM_001256835	exon5	c.G563T	p.R188L	.	.	93	4	57	0	.	91
R3HCC1L	27291	bcgsc.ca	37	10	99969034	99969034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001256620	exon4	c.A1163G	p.H388R	.	.	136	5	143	0	.	.
RAB15	376267	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	65417736	65417736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAB15	NM_198686	exon4	c.C380A	p.A127E	.	.	35	5	31	0	.	228
RABEP1	9135	hgsc.bcm.edu	37	17	5283729	5283729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RABEP1	NM_004703	exon16	c.A2342G	p.E781G	.	.	75	4	107	0	.	659
RAD23B	5887	hgsc.bcm.edu	37	9	110045933	110045933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAD23B	NM_002874	exon1	c.T23C	p.L8P	.	.	39	4	76	0	.	228
RAD51D	5892	hgsc.bcm.edu	37	17	33445530	33445530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAD51D	NM_002878	exon3	c.G253T	p.G85C	.	.	79	4	62	0	.	228
RADIL	55698	hgsc.bcm.edu;bcgsc.ca	37	7	4917718	4917718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RADIL	NM_018059	exon2	c.A53G	p.K18R	.	.	83	4	98	0	.	994
RALGPS1	9649	bcgsc.ca	37	9	129831511	129831511	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RALGPS1	NM_001190729	exon8	c.T486C	p.L162L	.	.	84	4	110	1	.	227
RALGPS2	55103	bcgsc.ca	37	1	178745915	178745915	+	Missense_Mutation	SNP	G	G	T	rs139533001	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RALGPS2	NM_152663	exon2	c.G16T	p.G6W	.	.	223	7	198	0	G|1.000;C|0.000	226
RAP1GAP2	23108	hgsc.bcm.edu	37	17	2921396	2921396	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAP1GAP2	NM_015085	exon18	c.G1536A	p.V512V	.	.	54	4	77	0	.	1
RAPGEF3	10411	bcgsc.ca	37	12	48143257	48143257	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAPGEF3	NM_001098531	exon10	c.A957G	p.A319A	.	.	51	5	43	1	.	660
RASA3	22821	hgsc.bcm.edu;bcgsc.ca	37	13	114780788	114780788	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASA3	NM_007368	exon14	c.G1302A	p.V434V	.	.	59	4	81	0	.	658
RASGEF1A	221002	hgsc.bcm.edu	37	10	43698747	43698747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASGEF1A	NM_145313	exon3	c.A320G	p.K107R	.	.	100	4	91	0	.	227
RASGRP4	115727	hgsc.bcm.edu	37	19	38903605	38903605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASGRP4	NM_170604	exon12	c.G1501A	p.A501T	.	.	42	4	81	0	.	660
RASSF6	166824	broad.mit.edu	37	4	74447986	74447986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASSF6	NM_201431	exon7	c.T685C	p.F229L	.	.	414	8	305	1	.	319
RBCK1	10616	hgsc.bcm.edu	37	20	400215	400215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBCK1	NM_031229	exon6	c.G596A	p.C199Y	.	.	60	3	95	0	.	522
RBL2	5934	bcgsc.ca	37	16	53513086	53513086	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBL2	NM_005611	exon18	c.C2724A	p.S908S	.	.	86	5	115	1	.	841
RBM14	10432	hgsc.bcm.edu	37	11	66392658	66392658	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBM14	NM_006328	exon2	c.C1311A	p.A437A	.	.	75	4	40	0	.	92
RBM14	10432	hgsc.bcm.edu;bcgsc.ca	37	11	66392968	66392968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBM14	NM_006328	exon2	c.C1621A	p.R541S	.	.	126	6	88	0	.	92
RBM19	9904	bcgsc.ca	37	12	114364944	114364944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBM19	NM_001146699	exon17	c.A2159G	p.E720G	.	.	158	6	180	2	.	95
RBMS2	5939	broad.mit.edu	37	12	56956208	56956208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBMS2	NM_002898	exon2	c.T74C	p.V25A	.	.	567	7	461	0	.	90
RBP3	5949	bcgsc.ca	37	10	48389790	48389790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBP3	NM_002900	exon1	c.T1088C	p.V363A	.	.	102	5	123	1	.	153
RC3H2	54542	bcgsc.ca	37	9	125639761	125639761	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RC3H2	NM_018835	exon9	c.A1314G	p.E438E	.	.	63	4	50	0	.	523
RDH11	51109	hgsc.bcm.edu	37	14	68157901	68157901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RDH11	NM_001252650	exon4	c.A410G	p.K137R	.	.	89	4	129	0	.	91
RECQL5	9400	hgsc.bcm.edu	37	17	73657713	73657713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RECQL5	NM_001003715	exon5	c.G847T	p.G283C	.	.	56	4	73	0	.	538
REPS2	9185	bcgsc.ca	37	X	17080580	17080580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	REPS2	NM_004726	exon9	c.G1134T	p.W378C	.	.	150	5	253	0	.	131
RFX8	731220	hgsc.bcm.edu	37	2	102031354	102031354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001145664	exon7	c.A523G	p.R175G	.	.	76	4	115	0	.	.
RGS12	6002	hgsc.bcm.edu	37	4	3424105	3424105	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RGS12	NM_002926	exon11	c.G2841T	p.S947S	.	.	122	5	141	0	.	226
RGS3	5998	bcgsc.ca	37	9	116357203	116357203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RGS3	NM_144488	exon24	c.A3187G	p.T1063A	.	.	140	5	207	1	.	227
RIMBP2	23504	bcgsc.ca	37	12	130919375	130919375	+	Silent	SNP	G	G	T	rs149905625	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RIMBP2	NM_015347	exon11	c.C2106A	p.A702A	.	.	61	4	74	0	G|1.000;A|0.000	142
RIMS2	9699	hgsc.bcm.edu	37	8	105026769	105026769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	RIMS2_ENST00000436393,neck,malignant_melanoma,+1	RIMS2	NM_001100117	exon19	c.C3260A	p.P1087Q	.	.	73	3	99	0	.	279
RIPK3	11035	hgsc.bcm.edu	37	14	24808320	24808320	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RIPK3	NM_006871	exon3	c.G372T	p.V124V	.	.	67	4	103	0	.	946
RLTPR	146206	hgsc.bcm.edu;bcgsc.ca	37	16	67679452	67679452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RLTPR	NM_001013838	exon2	c.C50T	p.T17I	.	.	75	4	109	0	.	67
RMDN2	151393	hgsc.bcm.edu;bcgsc.ca	37	2	38178622	38178622	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_144713	exon2	c.T264A	p.A88A	.	.	54	4	76	0	.	.
RNASE1	6035	hgsc.bcm.edu	37	14	21270132	21270132	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNASE1	NM_198235	exon3	c.G96T	p.R32R	.	.	96	4	92	0	.	90
RNASET2	8635	bcgsc.ca	37	6	167352457	167352457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNASET2	NM_003730	exon6	c.G372T	p.Q124H	.	.	48	4	39	0	.	90
RNASET2	8635	hgsc.bcm.edu	37	6	167356557	167356557	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNASET2	NM_003730	exon5	c.G282A	p.R94R	.	.	70	4	72	0	.	90
RNF111	54778	bcgsc.ca	37	15	59323066	59323066	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF111	NM_017610	exon2	c.A45G	p.K15K	.	.	161	6	191	0	.	92
RNF112	7732	hgsc.bcm.edu;bcgsc.ca	37	17	19314770	19314770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF112	NM_007148	exon1	c.A49G	p.K17E	.	.	28	4	35	0	.	92
RNF146	81847	hgsc.bcm.edu	37	6	127607967	127607967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF146	NM_001242850	exon3	c.G209T	p.R70L	.	.	200	9	243	0	.	226
RNF213	57674	hgsc.bcm.edu;bcgsc.ca	37	17	78341922	78341922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF213	NM_001256071	exon44	c.C12134A	p.P4045Q	.	.	110	5	138	0	.	577
RNF220	55182	hgsc.bcm.edu	37	1	45115396	45115396	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF220	NM_018150	exon13	c.A1509G	p.E503E	.	.	97	4	122	0	.	228
RNF5	6048	hgsc.bcm.edu	37	6	32148076	32148076	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF5	NM_006913	exon6	c.C516T	p.F172F	.	.	63	4	44	0	.	226
RNU6-71	100873774	bcgsc.ca	37	6	56296764	56296764	+	RNA	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	184	7	198	0	.	.
ROBO2	6092	hgsc.bcm.edu	37	3	77617564	77617564	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ROBO2	NM_002942	exon13	c.C1950A	p.T650T	.	.	95	4	108	0	.	328
RORC	6097	hgsc.bcm.edu	37	1	151779983	151779983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RORC	NM_005060	exon11	c.A1522G	p.T508A	.	.	76	4	73	0	.	227
RPAP2	79871	broad.mit.edu	37	1	92789251	92789251	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPAP2	NM_024813	exon8	c.C774A	p.S258S	.	.	345	8	438	1	.	91
RPF1	80135	bcgsc.ca	37	1	84955383	84955383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPF1	NM_025065	exon4	c.T434C	p.L145P	.	.	152	6	187	0	.	90
RPF1	80135	bcgsc.ca	37	1	84961925	84961925	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPF1	NM_025065	exon8	c.882-2A>G	.	.	.	146	6	170	1	.	90
RPF1	80135	bcgsc.ca	37	1	84962041	84962041	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPF1	NM_025065	exon8	c.A996G	p.E332E	.	.	237	8	262	0	.	90
RPL13A	23521	hgsc.bcm.edu	37	19	49994320	49994320	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPL13A	NM_012423	exon6	c.T366C	p.A122A	.	.	85	4	100	0	.	90
RPL26L1	51121	bcgsc.ca	37	5	172386869	172386869	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPL26L1	.	.	.	.	.	.	151	5	119	0	.	90
RPS6KC1	26750	hgsc.bcm.edu	37	1	213349823	213349823	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPS6KC1	NM_012424	exon8	c.G1032T	p.G344G	.	.	123	5	111	0	.	417
RPTN	126638	broad.mit.edu	37	1	152129120	152129120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPTN	NM_001122965	exon3	c.A455G	p.Q152R	.	.	648	8	761	1	.	68
RPTOR	57521	bcgsc.ca	37	17	78936749	78936749	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPTOR	NM_020761	exon33	c.C3831A	p.T1277T	.	.	200	6	197	1	.	847
RRNAD1	51093	hgsc.bcm.edu	37	1	156703277	156703277	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RRNAD1	NM_015997	exon5	c.C601T	p.Q201X	.	.	75	4	77	0	.	90
RRS1	23212	hgsc.bcm.edu	37	8	67342183	67342183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RRS1	NM_015169	exon1	c.C817T	p.R273C	.	.	73	5	58	0	.	90
RSAD1	55316	bcgsc.ca	37	17	48562113	48562113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RSAD1	NM_018346	exon9	c.G1220T	p.R407L	.	.	114	5	198	2	.	90
RTBDN	83546	bcgsc.ca	37	19	12945658	12945658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RTBDN	NM_001270440	exon2	c.A19G	p.T7A	.	.	219	6	250	0	.	90
RYR1	6261	hgsc.bcm.edu	37	19	38959769	38959769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RYR1	NM_001042723	exon26	c.A3545G	p.E1182G	.	.	86	4	96	0	.	100
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33855056	33855056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RYR3	NM_001243996	exon11	c.G991T	p.D331Y	.	.	86	30	120	0	.	520
SAA2-SAA4	100528017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18253136	18253136	+	Silent	SNP	C	C	A	rs201938371	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001199744	exon6	c.G540T	p.S180S	.	.	111	28	169	0	C|0.999;T|0.000	.
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23908202	23908202	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SACS	NM_014363	exon10	c.T9813C	p.V3271V	.	.	84	4	98	0	.	298
SATB1	6304	hgsc.bcm.edu;bcgsc.ca	37	3	18393620	18393620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SATB1	NM_002971	exon10	c.A1643G	p.N548S	.	.	146	6	220	0	.	228
SCAF4	57466	hgsc.bcm.edu	37	21	33068944	33068944	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCAF4	NM_020706	exon8	c.C897A	p.T299T	.	.	114	5	147	0	.	90
SCAI	286205	hgsc.bcm.edu	37	9	127781126	127781126	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCAI	NM_173690	exon10	c.A882G	p.G294G	.	.	82	4	105	0	.	138
SCD5	79966	hgsc.bcm.edu	37	4	83582036	83582036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCD5	NM_024906	exon4	c.T764C	p.V255A	.	.	99	4	114	0	.	91
SCN4A	6329	hgsc.bcm.edu;bcgsc.ca	37	17	62022891	62022891	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCN4A	NM_000334	exon19	c.C3549A	p.A1183A	.	.	136	6	204	0	.	93
SDC2	6383	bcgsc.ca	37	8	97605722	97605722	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SDC2	NM_002998	exon2	c.A75G	p.T25T	.	.	102	4	35	0	.	516
SDF2L1	23753	hgsc.bcm.edu	37	22	21998435	21998435	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SDF2L1	NM_022044	exon3	c.G637T	p.E213X	.	.	87	4	110	0	.	90
SEC16A	9919	hgsc.bcm.edu;bcgsc.ca	37	9	139370230	139370230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_014866	exon3	c.C1838A	p.P613Q	.	.	51	4	84	0	.	.
SEC24C	9632	hgsc.bcm.edu;bcgsc.ca	37	10	75526220	75526220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEC24C	NM_004922	exon13	c.T1720C	p.S574P	.	.	50	4	69	0	.	92
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49320786	49320786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SECISBP2L	NM_001193489	exon5	c.C758G	p.P253R	.	.	140	50	218	0	.	136
SEH1L	81929	broad.mit.edu	37	18	12955540	12955540	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEH1L	NM_001013437	exon3	c.C241A	p.R81R	.	.	453	9	627	1	.	90
SENP1	29843	hgsc.bcm.edu;bcgsc.ca	37	12	48491823	48491823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP1	NM_001267594	exon3	c.C89T	p.P30L	.	.	73	4	106	0	.	660
SENP1	29843	hgsc.bcm.edu;bcgsc.ca	37	12	48491866	48491866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP1	NM_001267594	exon3	c.A46G	p.T16A	.	.	81	4	117	0	.	660
SENP2	59343	hgsc.bcm.edu;bcgsc.ca	37	3	185316214	185316214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP2	NM_021627	exon3	c.C172A	p.Q58K	.	.	175	7	186	0	.	658
SENP3	26168	hgsc.bcm.edu	37	17	7466514	7466514	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP3	NM_015670	exon2	c.C121A	p.R41R	.	.	83	4	91	0	.	659
SEPHS1	22929	bcgsc.ca	37	10	13375941	13375941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEPHS1	NM_001195604	exon5	c.C436A	p.Q146K	.	.	212	6	223	0	.	116
SEPN1	57190	bcgsc.ca	37	1	26136290	26136290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEPN1	.	.	.	.	.	.	155	5	132	0	.	92
SEPT11	55752	broad.mit.edu	37	4	77949861	77949861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEPT11	NM_018243	exon8	c.T1033C	p.F345L	.	.	328	7	330	0	.	68
SERINC4	619189	hgsc.bcm.edu	37	15	44089116	44089116	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SERINC4	NM_001258031	exon7	c.A867T	p.L289L	.	.	121	4	175	0	.	90
SERPINB3	6317	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61324552	61324552	+	Missense_Mutation	SNP	C	C	A	rs150385073	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SERPINB3	NM_006919	exon6	c.G564T	p.K188N	.	.	852	227	955	1	C|0.997;A|0.003	228
SETD1A	9739	hgsc.bcm.edu;bcgsc.ca	37	16	30976649	30976649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD1A	NM_014712	exon7	c.A1586G	p.E529G	.	.	101	5	133	0	.	93
SETD1B	23067	hgsc.bcm.edu	37	12	122257551	122257551	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD1B	NM_015048	exon11	c.G3531T	p.P1177P	.	.	79	4	106	0	.	86
SETD1B	23067	hgsc.bcm.edu	37	12	122261465	122261465	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD1B	NM_015048	exon12	c.C4851A	p.P1617P	.	.	81	4	68	0	.	86
SETD8	387893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123880916	123880924	+	In_Frame_Del	DEL	TCGCAAACT	TCGCAAACT	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	TCGCAAACT	TCGCAAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD8	NM_020382	exon5	c.534_542del	p.178_181del	.	.	54	16	93	0	.	90
SETX	23064	hgsc.bcm.edu	37	9	135218087	135218087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETX	NM_015046	exon5	c.C488A	p.P163H	.	.	74	5	104	0	.	93
SFSWAP	6433	hgsc.bcm.edu	37	12	132283969	132283969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SFSWAP	NM_001261411	exon19	c.A2948G	p.D983G	.	.	81	4	140	0	.	91
SFXN5	94097	hgsc.bcm.edu	37	2	73247367	73247367	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SFXN5	NM_144579	exon7	c.357+1G>A	.	.	.	89	4	126	0	.	91
SGK223	0	hgsc.bcm.edu	37	8	8185764	8185764	+	Missense_Mutation	SNP	G	G	T	rs150737128	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001080826	exon4	c.C2528A	p.P843H	.	.	72	4	149	0	G|0.999;A|0.000	.
SGMS1	259230	hgsc.bcm.edu	37	10	52066912	52066912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGMS1	NM_147156	exon11	c.A1232G	p.N411S	.	.	149	6	223	0	.	227
SGMS2	166929	hgsc.bcm.edu	37	4	108824505	108824505	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGMS2	NM_001136257	exon4	c.G690T	p.T230T	.	.	98	4	91	0	.	226
SGSM1	129049	bcgsc.ca	37	22	25251319	25251319	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGSM1	NM_001098497	exon7	c.T591C	p.A197A	.	.	56	4	76	0	.	27
SGSM1	129049	hgsc.bcm.edu	37	22	25280066	25280066	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGSM1	NM_133454	exon16	c.A1707G	p.S569S	.	.	68	4	72	0	.	27
SGSM3	27352	hgsc.bcm.edu	37	22	40803030	40803030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGSM3	NM_015705	exon11	c.C1195A	p.R399S	.	.	70	4	108	0	.	494
SGSM3	27352	hgsc.bcm.edu;bcgsc.ca	37	22	40803251	40803251	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGSM3	NM_015705	exon12	c.G1287T	p.T429T	.	.	94	6	113	0	.	494
SH3D19	152503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152060939	152060939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SH3D19	NM_001009555	exon14	c.G1513A	p.D505N	.	.	91	21	157	1	.	92
SH3D21	79729	hgsc.bcm.edu	37	1	36785547	36785547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SH3D21	NM_001162530	exon14	c.T1283C	p.I428T	.	.	69	5	83	0	.	91
SH3GL2	6456	hgsc.bcm.edu	37	9	17791315	17791315	+	Silent	SNP	G	G	T	rs150625805	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SH3GL2	NM_003026	exon7	c.G711T	p.T237T	.	.	91	4	234	0	G|0.998;A|0.002	91
SHANK2	22941	hgsc.bcm.edu;bcgsc.ca	37	11	70332784	70332784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHANK2	NM_133266	exon10	c.T1850C	p.L617P	.	.	101	5	87	0	.	94
SHANK3	85358	hgsc.bcm.edu	37	22	51143419	51143419	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHANK3	NM_033517	exon16	c.G1882T	p.G628X	.	.	72	5	117	0	.	69
SHCBP1	79801	hgsc.bcm.edu;bcgsc.ca	37	16	46633834	46633834	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHCBP1	NM_024745	exon9	c.C1254A	p.G418G	.	.	70	4	110	0	.	154
SHMT2	6472	hgsc.bcm.edu;bcgsc.ca	37	12	57627867	57627867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHMT2	NM_005412	exon11	c.T1361C	p.I454T	.	.	94	5	98	0	.	91
SIK3	23387	hgsc.bcm.edu;bcgsc.ca	37	11	116746722	116746722	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SIK3	NM_025164	exon9	c.T925C	p.L309L	.	.	76	4	101	0	.	919
SIL1	64374	bcgsc.ca	37	5	138463491	138463491	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SIL1	NM_001037633	exon3	c.G42T	p.L14L	.	.	193	6	168	3	.	90
SKAP2	8935	hgsc.bcm.edu	37	7	26779530	26779530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SKAP2	NM_003930	exon5	c.G361A	p.G121S	.	.	99	4	162	0	.	91
SLAIN2	57606	hgsc.bcm.edu	37	4	48422205	48422205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020846	exon7	c.T1424C	p.V475A	.	.	96	4	178	0	.	.
SLC12A1	6557	hgsc.bcm.edu	37	15	48519318	48519318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A1	NM_001184832	exon5	c.C671T	p.T224I	.	.	99	4	155	0	.	24
SLC12A1	6557	hgsc.bcm.edu	37	15	48539187	48539187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A1	NM_001184832	exon12	c.C1534T	p.L512F	.	.	98	4	138	0	.	24
SLC12A5	57468	hgsc.bcm.edu;bcgsc.ca	37	20	44676618	44676618	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A5	NM_001134771	exon16	c.1977-2A>G	.	.	.	42	4	60	0	.	156
SLC12A9	56996	hgsc.bcm.edu	37	7	100454532	100454532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A9	NM_001267812	exon5	c.A491G	p.Y164C	.	.	84	4	83	0	.	90
SLC15A3	51296	bcgsc.ca	37	11	60709523	60709523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC15A3	NM_016582	exon4	c.A1091G	p.Q364R	.	.	98	5	158	1	.	90
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73100204	73100204	+	Silent	SNP	G	G	C	rs141647560	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SLC16A5,brain,glioma,+2	SLC16A5	NM_001271765	exon6	c.G1293C	p.A431A	.	.	133	39	176	0	G|0.999;A|0.001	90
SLC22A23	63027	hgsc.bcm.edu;bcgsc.ca	37	6	3416016	3416016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC22A23	NM_015482	exon2	c.G728A	p.G243D	.	.	104	5	174	0	.	23
SLC22A2	6582	hgsc.bcm.edu	37	6	160663434	160663434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC22A2	NM_003058	exon8	c.A1280G	p.D427G	.	.	61	4	124	0	.	154
SLC22A2	6582	hgsc.bcm.edu	37	6	160666525	160666525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC22A2	NM_003058	exon6	c.A1010G	p.D337G	.	.	79	4	85	0	.	154
SLC24A1	9187	bcgsc.ca	37	15	65918018	65918018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_004727	exon2	c.T1600C	p.F534L	.	.	351	8	415	2	.	.
SLC25A23	79085	hgsc.bcm.edu	37	19	6456473	6456473	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC25A23	NM_024103	exon4	c.G441A	p.L147L	.	.	64	4	103	0	.	92
SLC26A1	10861	hgsc.bcm.edu	37	4	984946	984946	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC26A1	NM_022042	exon2	c.C546A	p.T182T	.	.	121	5	155	0	.	91
SLC26A6	65010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	48669737	48669737	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC26A6	NM_022911	exon5	c.A526T	p.R176X	.	.	262	109	340	0	.	946
SLC26A8	116369	hgsc.bcm.edu	37	6	35918964	35918964	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC26A8	NM_052961	exon19	c.G2448T	p.R816R	.	.	99	4	146	0	.	92
SLC2A13	114134	hgsc.bcm.edu	37	12	40158289	40158289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC2A13	NM_052885	exon9	c.C1693T	p.H565Y	.	.	89	4	158	0	.	515
SLC38A6	145389	hgsc.bcm.edu	37	14	61550393	61550393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC38A6	NM_001172702	exon17	c.T1529C	p.I510T	.	.	92	4	99	0	.	92
SLC38A6	145389	hgsc.bcm.edu	37	14	61550399	61550399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC38A6	NM_001172702	exon17	c.A1535G	p.H512R	.	.	84	5	96	0	.	92
SLC38A6	145389	hgsc.bcm.edu	37	14	61550409	61550409	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC38A6	NM_001172702	exon17	c.C1545A	p.T515T	.	.	79	4	87	0	.	92
SLC39A7	7922	hgsc.bcm.edu	37	6	33170874	33170874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC39A7	NM_006979	exon6	c.C1128A	p.S376R	.	.	84	3	119	0	.	67
SLC46A3	283537	hgsc.bcm.edu	37	13	29286871	29286871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC46A3	NM_181785	exon3	c.A1006G	p.M336V	.	.	112	5	154	0	.	69
SLC47A1	55244	hgsc.bcm.edu	37	17	19476161	19476161	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC47A1	NM_018242	exon16	c.T1473C	p.D491D	.	.	100	4	110	0	.	90
SLC51A	200931	hgsc.bcm.edu;bcgsc.ca	37	3	195944788	195944788	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_152672	exon2	c.A114G	p.T38T	.	.	43	5	85	0	.	.
SLC52A1	55065	hgsc.bcm.edu	37	17	4936582	4936582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017986	exon4	c.G1108T	p.G370C	.	.	88	4	105	0	.	.
SLC5A3	6526	hgsc.bcm.edu	37	21	35469094	35469094	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SLC5A3,NS,carcinoma,-1	SLC5A3	NM_006933	exon2	c.A1597T	p.T533S	.	.	100	5	146	0	.	92
SLC6A6	6533	hgsc.bcm.edu	37	3	14526411	14526411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC6A6	NM_003043	exon15	c.C1759T	p.R587C	.	.	68	4	117	0	.	91
SLC7A8	23428	hgsc.bcm.edu	37	14	23598939	23598939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC7A8	NM_012244	exon9	c.A1183G	p.N395D	.	.	80	4	165	0	.	91
SLC9C1	285335	hgsc.bcm.edu;bcgsc.ca	37	3	111985087	111985089	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_183061	exon8	c.874_876del	p.292_292del	.	.	413	145	407	0	.	.
SLITRK2	84631	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144906050	144906050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLITRK2	NM_001144005	exon5	c.C2107A	p.Q703K	.	.	101	23	114	1	.	136
SLITRK2	84631	hgsc.bcm.edu	37	X	144905572	144905572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLITRK2	NM_001144005	exon5	c.G1629T	p.W543C	.	.	97	4	163	0	.	136
SMARCA2	6595	hgsc.bcm.edu;bcgsc.ca	37	9	2056807	2056807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMARCA2	NM_139045	exon7	c.A1309G	p.K437E	.	.	65	4	107	0	.	653
SMARCA5	8467	bcgsc.ca	37	4	144464780	144464780	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMARCA5	NM_003601	exon15	c.C2022A	p.I674I	.	.	131	5	111	0	.	227
SMARCC2	6601	broad.mit.edu;bcgsc.ca	37	12	56558092	56558093	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMARCC2	NM_003075	exon27	c.3563_3564insAC	p.L1188fs	.	.	28	8	48	0	.	229
SMCO2	0	bcgsc.ca	37	12	27628626	27628626	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001145010	exon5	c.T474C	p.I158I	.	.	63	4	56	0	.	.
SMPD4	55627	broad.mit.edu	37	2	130911923	130911923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMPD4	NM_017951	exon16	c.A1703G	p.K568R	.	.	403	7	629	0	.	90
SNAP91	9892	hgsc.bcm.edu;bcgsc.ca	37	6	84300973	84300973	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNAP91	NM_001242792	exon21	c.T1971C	p.S657S	.	.	44	4	87	0	.	23
SNX12	29934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70282707	70282707	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNX12	NM_001256185	exon3	c.C258T	p.S86S	.	.	87	19	128	0	.	226
SNX17	9784	hgsc.bcm.edu	37	2	27597622	27597622	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNX17	NM_014748	exon8	c.T678C	p.A226A	.	.	89	4	110	0	.	651
SNX21	90203	bcgsc.ca	37	20	44469556	44469556	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNX21	NM_033421	exon4	c.G726T	p.P242P	.	.	90	5	99	2	.	290
SNX30	401548	bcgsc.ca	37	9	115613160	115613160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNX30	NM_001012994	exon7	c.C1036A	p.Q346K	.	.	111	4	209	0	.	68
SORCS2	57537	hgsc.bcm.edu	37	4	7735080	7735080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SORCS2	NM_020777	exon24	c.C3140T	p.A1047V	.	.	107	5	117	0	.	91
SORL1	6653	ucsc.edu	37	11	121477981	121477981	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SORL1	NM_003105	exon37	c.C5148T	p.N1716N	.	.	38	4	41	0	.	228
SOX4	6659	hgsc.bcm.edu	37	6	21595158	21595158	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SOX4	NM_003107	exon1	c.G393A	p.R131R	.	.	59	4	96	0	.	675
SPACA3	124912	hgsc.bcm.edu;bcgsc.ca	37	17	31323887	31323887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPACA3	NM_173847	exon3	c.G370T	p.G124C	.	.	123	5	141	0	.	92
SPAG5	10615	hgsc.bcm.edu	37	17	26907029	26907029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPAG5	NM_006461	exon16	c.A2795G	p.E932G	.	.	140	6	134	0	.	90
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172835323	172835323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA16	NM_031955	exon2	c.A199G	p.K67E	.	.	1219	190	696	0	.	94
SPATA20	64847	hgsc.bcm.edu	37	17	48628203	48628203	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA20	NM_022827	exon11	c.C1308A	p.T436T	.	.	125	5	169	0	.	90
SPATA31D1	389763	hgsc.bcm.edu	37	9	84608274	84608274	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001001670	exon4	c.C2889A	p.S963S	.	.	89	4	107	0	.	.
SPATA5L1	79029	hgsc.bcm.edu;bcgsc.ca	37	15	45713246	45713246	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA5L1	NM_024063	exon8	c.T2100C	p.A700A	.	.	60	4	43	0	.	94
SPATS2	65244	hgsc.bcm.edu	37	12	49854820	49854820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATS2	NM_023071	exon3	c.G25T	p.D9Y	.	.	211	9	272	0	.	135
SPECC1	92521	bcgsc.ca	37	17	20130725	20130725	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPECC1	NM_001243439	exon5	c.1864-1G>T	.	.	.	172	6	136	0	.	639
SPECC1	92521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	20107661	20107661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPECC1	NM_001033553	exon4	c.C299G	p.T100S	.	.	63	26	102	0	.	639
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44876208	44876208	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPG11	NM_025137	exon30	c.T5670C	p.C1890C	.	.	98	5	102	0	.	95
SPN	6693	hgsc.bcm.edu;bcgsc.ca	37	16	29675060	29675060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPN	NM_001030288	exon2	c.T11C	p.L4P	.	.	104	5	122	0	.	514
SPON1	10418	bcgsc.ca	37	11	14287226	14287226	+	RNA	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPON1	.	.	.	.	.	.	99	4	143	0	.	1
SPRR2A	6700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153029108	153029108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPRR2A	NM_005988	exon2	c.C104A	p.P35H	.	.	183	34	183	0	.	69
SPTA1	6708	hgsc.bcm.edu	37	1	158641151	158641151	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPTA1	NM_003126	exon12	c.C1581A	p.A527A	.	.	203	9	141	0	.	142
SPTAN1	6709	hgsc.bcm.edu	37	9	131337065	131337065	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPTAN1	NM_003127	exon4	c.G475T	p.E159X	.	.	100	4	124	0	.	158
SPTBN4	57731	hgsc.bcm.edu	37	19	41038617	41038617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SPTBN4,NS,carcinoma,0	SPTBN4	NM_020971	exon19	c.G4034A	p.R1345Q	.	.	69	3	118	0	.	94
SPTBN5	51332	hgsc.bcm.edu	37	15	42182404	42182404	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPTBN5	NM_016642	exon5	c.280-1G>T	.	.	.	90	4	147	0	.	91
SREBF2	6721	bcgsc.ca	37	22	42273383	42273383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SREBF2	NM_004599	exon8	c.C1537A	p.P513T	.	.	158	7	165	1	.	154
SRP14	6727	bcgsc.ca	37	15	40328591	40328591	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRP14	NM_003134	exon5	c.C354A	p.A118A	.	.	381	12	509	6	.	514
SRPX	8406	hgsc.bcm.edu;bcgsc.ca	37	X	38013812	38013812	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRPX	NM_006307	exon9	c.C1114A	p.R372R	.	.	81	4	79	0	.	130
SRRM2	23524	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2812361	2812361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRRM2	NM_016333	exon11	c.G1832T	p.R611L	.	.	54	5	89	0	.	93
SRSF11	9295	hgsc.bcm.edu;bcgsc.ca	37	1	70710417	70710417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRSF11	NM_001190987	exon9	c.G851T	p.R284L	.	.	115	5	129	0	.	227
SSRP1	6749	bcgsc.ca	37	11	57098343	57098343	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SSRP1	NM_003146	exon10	c.C1282A	p.R428R	.	.	158	5	185	1	.	228
STAP1	26228	bcgsc.ca	37	4	68456604	68456604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STAP1	NM_012108	exon7	c.T662C	p.I221T	.	.	135	5	157	0	.	68
STARD13	90627	hgsc.bcm.edu	37	13	33681005	33681005	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STARD13	NM_178006	exon13	c.A3114G	p.E1038E	.	.	97	4	132	0	.	94
STBD1	8987	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77230621	77230621	+	Missense_Mutation	SNP	G	G	T	rs147970715	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STBD1	NM_003943	exon2	c.G545T	p.R182I	.	.	128	34	150	1	G|0.999;A|0.001	69
STIP1	10963	hgsc.bcm.edu	37	11	63962047	63962047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STIP1	NM_006819	exon4	c.G458T	p.R153L	.	.	93	5	134	0	.	93
STK32B	55351	bcgsc.ca	37	4	5332949	5332949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STK32B	NM_018401	exon4	c.A263G	p.Y88C	.	.	59	6	81	0	.	1002
STK32B	55351	hgsc.bcm.edu	37	4	5399971	5399971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STK32B	NM_018401	exon5	c.G472T	p.G158X	.	.	96	4	146	0	.	1002
STK38L	23012	hgsc.bcm.edu;bcgsc.ca	37	12	27475143	27475143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STK38L	NM_015000	exon13	c.C1243T	p.P415S	.	.	58	5	75	0	.	980
STOX1	219736	hgsc.bcm.edu	37	10	70645469	70645469	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STOX1	NM_152709	exon3	c.T1917C	p.H639H	.	.	54	4	60	0	.	92
STOX2	56977	hgsc.bcm.edu	37	4	184930350	184930350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STOX2	NM_020225	exon3	c.T359C	p.L120P	.	.	86	5	91	0	.	22
STX19	415117	hgsc.bcm.edu;bcgsc.ca	37	3	93733245	93733245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STX19	NM_001001850	exon2	c.G869A	p.C290Y	.	.	84	5	99	0	.	90
STXBP4	252983	hgsc.bcm.edu	37	17	53150293	53150293	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STXBP4	NM_178509	exon13	c.C1044A	p.A348A	.	.	74	5	102	0	.	91
STXBP5L	9515	bcgsc.ca	37	3	120941888	120941888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STXBP5L	NM_014980	exon11	c.A995G	p.D332G	.	.	130	5	213	1	.	77
SULT1A2	6799	ucsc.edu	37	16	28607228	28607228	+	Silent	SNP	A	A	G	rs1690407		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SULT1A2	NM_001054	exon2	c.T24C	p.S8S	.	.	95	14	98	7	A|0.992;G|0.008	90
SUPT6H	6830	hgsc.bcm.edu	37	17	27022398	27022398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SUPT6H	NM_003170	exon29	c.T3803C	p.M1268T	.	.	158	7	113	0	.	93
SUPT6H	6830	hgsc.bcm.edu	37	17	27027431	27027431	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SUPT6H	NM_003170	exon35	c.G4707T	p.A1569A	.	.	94	4	86	0	.	93
SWI5	375757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131038431	131038431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001040011	exon1	c.C7T	p.R3W	.	.	49	17	61	1	.	.
SWT1	54823	bcgsc.ca	37	1	185153961	185153961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SWT1	NM_017673	exon9	c.C1327A	p.Q443K	.	.	212	8	226	0	.	91
SYCP2	10388	hgsc.bcm.edu	37	20	58468228	58468228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SYCP2	NM_014258	exon21	c.T1762C	p.S588P	.	.	84	4	87	0	.	525
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64641845	64641845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SYNE2	NM_182914	exon95	c.A17419G	p.S5807G	.	.	113	5	88	0	.	164
TAF15	8148	bcgsc.ca	37	17	34144728	34144728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAF15	NM_003487	exon2	c.A16G	p.S6G	.	.	289	9	239	0	.	723
TAF15	8148	hgsc.bcm.edu;bcgsc.ca	37	17	34171487	34171487	+	Missense_Mutation	SNP	G	G	T	rs71381481	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAF15	NM_139215	exon15	c.G1184T	p.R395L	.	.	182	8	158	0	G|0.999;A|0.001	723
TAF1C	9013	hgsc.bcm.edu	37	16	84212983	84212983	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAF1C	NM_005679	exon14	c.G2174A	p.W725X	.	.	84	4	122	0	.	91
TAF6	6878	hgsc.bcm.edu	37	7	99709449	99709449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAF6	NM_001190415	exon9	c.C913A	p.R305S	.	.	125	5	154	0	.	91
TANGO2	128989	bcgsc.ca	37	22	20049138	20049138	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_152906	exon7	c.A537G	p.E179E	.	.	239	8	176	1	.	.
TAOK2	9344	hgsc.bcm.edu	37	16	30002499	30002499	+	Silent	SNP	G	G	T	rs138517482	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAOK2	NM_004783	exon19	c.G2760T	p.L920L	.	.	79	4	97	0	G|1.000;C|0.000	521
TAS2R43	259289	hgsc.bcm.edu;bcgsc.ca	37	12	11244577	11244577	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAS2R43	NM_176884	exon1	c.T252C	p.A84A	.	.	107	6	152	0	.	1
TASP1	55617	hgsc.bcm.edu	37	20	13371068	13371068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TASP1	NM_017714	exon14	c.T1202C	p.V401A	.	.	65	4	77	0	.	90
TBC1D1	23216	bcgsc.ca	37	4	38117541	38117541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D1	NM_001253912	exon18	c.G3050T	p.R1017L	.	.	222	8	256	1	.	91
TBC1D13	54662	bcgsc.ca	37	9	131565572	131565572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D13	NM_018201	exon8	c.A587G	p.E196G	.	.	154	5	258	0	.	90
TBC1D4	9882	bcgsc.ca	37	13	75936679	75936679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D4	NM_014832	exon2	c.C563A	p.P188H	.	.	143	5	234	0	.	95
TBC1D5	9779	hgsc.bcm.edu;bcgsc.ca	37	3	17333464	17333464	+	Missense_Mutation	SNP	C	C	A	rs143029277	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D5	NM_014744	exon15	c.G1168T	p.G390C	.	.	72	4	103	0	C|1.000;T|0.000	91
TBC1D7	51256	hgsc.bcm.edu	37	6	13316857	13316857	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D7	NM_001143965	exon5	c.C465A	p.T155T	.	.	96	4	101	0	.	91
TBCCD1	55171	broad.mit.edu;bcgsc.ca	37	3	186272432	186272432	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBCCD1	NM_001134415	exon6	c.T1155C	p.H385H	.	.	156	6	211	0	.	108
TBL3	10607	hgsc.bcm.edu	37	16	2027159	2027159	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBL3	NM_006453	exon15	c.T1545C	p.G515G	.	.	40	4	57	0	.	90
TCEA3	6920	hgsc.bcm.edu	37	1	23710837	23710837	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_003196	exon11	c.1038+2T>C	.	.	.	55	4	91	0	.	.
TCF3	6929	hgsc.bcm.edu;bcgsc.ca	37	19	1611812	1611812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCF3	NM_003200	exon19	c.G1859T	p.R620L	.	.	122	5	168	0	.	721
TCF4	6925	hgsc.bcm.edu	37	18	52895541	52895541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCF4	NM_001243226	exon20	c.A2237G	p.K746R	.	.	44	4	62	0	.	523
TCF4	6925	hgsc.bcm.edu	37	18	52921728	52921728	+	Missense_Mutation	SNP	C	C	T	rs11660217	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCF4	NM_001243226	exon16	c.G1656A	p.M552I	.	.	66	4	97	0	C|0.995;T|0.005	523
TCHP	84260	hgsc.bcm.edu	37	12	110340853	110340853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCHP	NM_001143852	exon2	c.T22C	p.S8P	.	.	87	4	149	0	.	91
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67818045	67818045	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCIRG1	NM_006019	exon19	c.C2328A	p.I776I	.	.	386	167	433	1	.	227
TCP11L2	255394	hgsc.bcm.edu	37	12	106740234	106740234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCP11L2	NM_152772	exon10	c.G1486T	p.A496S	.	.	69	4	109	0	.	93
TDP2	51567	bcgsc.ca	37	6	24653317	24653317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TDP2	NM_016614	exon6	c.C701A	p.A234D	.	.	101	4	132	1	.	660
TDRD9	122402	hgsc.bcm.edu;bcgsc.ca	37	14	104470585	104470585	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TDRD9	NM_153046	exon14	c.A1494G	p.G498G	.	.	91	4	137	0	.	70
TEAD1	7003	hgsc.bcm.edu	37	11	12904610	12904610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEAD1	NM_021961	exon9	c.A637G	p.T213A	.	.	97	4	137	0	.	90
TEK	7010	hgsc.bcm.edu	37	9	27212778	27212778	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEK	NM_000459	exon17	c.G2760T	p.L920L	.	.	84	4	141	0	.	1584
TEKT1	83659	hgsc.bcm.edu;bcgsc.ca	37	17	6716342	6716342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEKT1	NM_053285	exon6	c.C660A	p.F220L	.	.	65	4	95	0	.	92
TENM2	57451	hgsc.bcm.edu	37	5	167675305	167675305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001122679	exon27	c.C7334T	p.P2445L	.	.	98	4	144	0	.	.
TENM2	57451	hgsc.bcm.edu;bcgsc.ca	37	5	167689229	167689229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001122679	exon29	c.G7712T	p.R2571L	.	.	89	6	115	0	.	.
TEP1	7011	hgsc.bcm.edu	37	14	20848600	20848600	+	Silent	SNP	G	G	T	rs200043242	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEP1	NM_007110	exon34	c.C4797A	p.P1599P	.	.	54	4	70	0	G|0.999;A|0.000	95
TEP1	7011	hgsc.bcm.edu	37	14	20872802	20872802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEP1	NM_007110	exon5	c.T1000C	p.S334P	.	.	92	4	114	0	.	95
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106155605	106155605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TET2	NM_001127208	exon3	c.A506T	p.H169L	.	.	149	43	220	0	.	4618
TEX10	54881	hgsc.bcm.edu	37	9	103090232	103090232	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEX10	NM_001161584	exon8	c.A1647G	p.K549K	.	.	113	5	113	0	.	92
TEX14	56155	hgsc.bcm.edu;bcgsc.ca	37	17	56690838	56690838	+	Missense_Mutation	SNP	G	G	T	rs150820263	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TEX14,NS,carcinoma,+1	TEX14	NM_001201457	exon9	c.C967A	p.R323S	.	.	144	7	198	1	G|1.000;A|0.000	810
TFCP2L1	29842	hgsc.bcm.edu	37	2	121991665	121991665	+	Splice_Site	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TFCP2L1	NM_014553	exon13	c.1198+2T>A	.	.	.	56	4	61	0	.	93
TFEC	22797	broad.mit.edu	37	7	115582012	115582012	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TFEC	NM_012252	exon7	c.C598A	p.R200R	.	.	785	9	468	1	.	153
TFPI	7035	bcgsc.ca	37	2	188368422	188368422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TFPI	NM_001032281	exon2	c.C74A	p.P25H	.	.	248	7	261	1	.	91
TGM2	7052	hgsc.bcm.edu	37	20	36766769	36766769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TGM2	NM_198951	exon10	c.A1361G	p.E454G	.	.	94	4	127	0	.	155
TGM2	7052	ucsc.edu;bcgsc.ca	37	20	36769692	36769692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TGM2	NM_198951	exon8	c.A1091G	p.K364R	.	.	32	4	65	0	.	155
THBS4	7060	hgsc.bcm.edu	37	5	79351663	79351663	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	THBS4	NM_003248	exon3	c.C348T	p.N116N	.	.	82	4	151	0	.	90
THBS4	7060	hgsc.bcm.edu	37	5	79355537	79355537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	THBS4	NM_003248	exon7	c.T796C	p.F266L	.	.	54	4	95	0	.	90
THEMIS	387357	hgsc.bcm.edu	37	6	128134090	128134090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	THEMIS	NM_001010923	exon4	c.A1696G	p.T566A	.	.	95	4	88	0	.	94
TIAM1	7074	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	32639202	32639202	+	Silent	SNP	G	G	T	rs139712298	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TIAM1	NM_003253	exon5	c.C87A	p.S29S	.	.	41	4	87	0	G|0.999;A|0.001	724
TICRR	90381	hgsc.bcm.edu	37	15	90142664	90142664	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_152259	exon8	c.C2010A	p.T670T	.	.	92	4	144	0	.	.
TIMD4	91937	hgsc.bcm.edu	37	5	156349214	156349214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TIMD4	NM_138379	exon7	c.C908A	p.P303H	.	.	82	5	125	0	.	92
TIMM44	10469	hgsc.bcm.edu	37	19	7999080	7999080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TIMM44	NM_006351	exon5	c.A437G	p.K146R	.	.	93	4	119	0	.	91
TJP2	9414	hgsc.bcm.edu	37	9	71842715	71842715	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TJP2	NM_001170416	exon8	c.T1338C	p.S446S	.	.	91	5	142	0	.	115
TKT	7086	bcgsc.ca	37	3	53269000	53269000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TKT	NM_001258028	exon6	c.G652T	p.G218C	.	.	70	4	90	0	.	92
TKT	7086	hgsc.bcm.edu	37	3	53289863	53289863	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TKT	NM_001258028	exon1	c.G96A	p.A32A	.	.	80	4	148	0	.	92
TLR4	7099	bcgsc.ca	37	9	120476594	120476594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TLR4	NM_138554	exon3	c.A2188G	p.S730G	.	.	188	7	192	2	.	577
TM9SF1	10548	hgsc.bcm.edu	37	14	24662037	24662037	+	Silent	SNP	G	G	T	rs143770715	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TM9SF1	NM_001014842	exon3	c.C784A	p.R262R	.	.	100	4	144	0	G|1.000;A|0.000	91
TM9SF4	9777	hgsc.bcm.edu	37	20	30734649	30734649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TM9SF4	NM_014742	exon9	c.G945T	p.E315D	.	.	95	5	108	0	.	514
TMEM110-MUSTN1	100526772	hgsc.bcm.edu	37	3	52874604	52874604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001198974	exon8	c.A791G	p.E264G	.	.	55	4	66	0	.	.
TMEM123	114908	hgsc.bcm.edu	37	11	102272281	102272281	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM123	NM_052932	exon4	c.G591A	p.R197R	.	.	90	5	108	0	.	135
TMEM173	340061	bcgsc.ca	37	5	138858024	138858024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM173	NM_198282	exon6	c.G590T	p.R197L	.	.	266	7	188	1	.	69
TMEM183B	653659	hgsc.bcm.edu	37	1	202976622	202976622	+	Missense_Mutation	SNP	G	G	T	rs199910238		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001079809	exon1	c.G29T	p.R10M	.	.	8	6	0	0	.	.
TMEM201	199953	hgsc.bcm.edu	37	1	9662234	9662234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM201	NM_001010866	exon6	c.T1064C	p.L355P	.	.	97	4	185	0	.	68
TMEM214	54867	hgsc.bcm.edu	37	2	27258128	27258128	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM214	NM_017727	exon3	c.A477G	p.E159E	.	.	96	4	150	0	.	115
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75970580	75970580	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM30A	NM_018247	exon4	c.A501G	p.P167P	.	.	189	69	263	0	.	90
TMEM72	643236	hgsc.bcm.edu	37	10	45429084	45429084	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM72	NM_001123376	exon4	c.210-1G>T	.	.	.	52	4	63	0	.	90
TMEM87A	25963	hgsc.bcm.edu	37	15	42529654	42529654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM87A	NM_015497	exon9	c.A844G	p.N282D	.	.	89	4	101	0	.	91
TMPRSS11BNL	401136	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	69078095	69078095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001129907	exon2	c.C109A	p.H37N	.	.	306	89	437	0	.	.
TMPRSS13	84000	hgsc.bcm.edu	37	11	117780678	117780678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMPRSS13	NM_001206790	exon8	c.G952T	p.G318X	.	.	73	5	97	0	.	91
TMPRSS9	360200	hgsc.bcm.edu	37	19	2413833	2413833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMPRSS9	NM_182973	exon9	c.T1288C	p.W430R	.	.	96	4	115	0	.	91
TMTC2	160335	hgsc.bcm.edu	37	12	83526015	83526015	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMTC2	NM_152588	exon12	c.A2358G	p.G786G	.	.	124	5	139	0	.	92
TMUB2	79089	hgsc.bcm.edu	37	17	42266555	42266555	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMUB2	NM_001076674	exon3	c.G201A	p.L67L	.	.	94	4	114	0	.	91
TNF	7124	hgsc.bcm.edu	37	6	31544346	31544346	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNF	NM_000594	exon2	c.C222A	p.A74A	.	.	74	4	73	0	.	1085
TNFRSF10D	8793	hgsc.bcm.edu	37	8	23003279	23003279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNFRSF10D	NM_003840	exon5	c.T638C	p.L213P	.	.	56	4	101	0	.	651
TNK1	8711	hgsc.bcm.edu	37	17	7290400	7290400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNK1	NM_001251902	exon9	c.G1339T	p.G447C	.	.	67	4	97	0	.	547
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57069548	57069548	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNKS1BP1	NM_033396	exon8	c.G4834T	p.E1612X	.	.	82	4	94	0	.	91
TNRC6C	57690	hgsc.bcm.edu	37	17	76045435	76045435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNRC6C	NM_018996	exon4	c.C292A	p.L98I	.	.	114	5	188	0	.	24
TNRC6C	57690	hgsc.bcm.edu;bcgsc.ca	37	17	76046560	76046560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNRC6C	NM_018996	exon4	c.G1417A	p.D473N	.	.	76	4	99	0	.	24
TNXB	7148	hgsc.bcm.edu	37	6	32029479	32029479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNXB	NM_019105	exon21	c.C7187A	p.P2396H	.	.	115	5	131	0	.	90
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32038106	32038106	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNXB	NM_019105	exon14	c.C5076A	p.L1692L	.	.	166	31	187	0	.	90
TOM1L2	146691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17801962	17801962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TOM1L2	NM_001033551	exon3	c.A164G	p.K55R	.	.	295	119	314	1	.	90
TONSL	4796	hgsc.bcm.edu	37	8	145659654	145659654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TONSL	NM_013432	exon21	c.C3094A	p.Q1032K	.	.	90	4	125	0	.	92
TOR4A	54863	hgsc.bcm.edu	37	9	140173587	140173587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017723	exon2	c.A446G	p.D149G	.	.	67	4	97	0	.	.
TOX	9760	bcgsc.ca	37	8	59727910	59727910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TOX	NM_014729	exon7	c.C1379A	p.P460H	.	.	223	7	215	4	.	227
TP63	8626	bcgsc.ca	37	3	189604224	189604224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TP63	NM_003722	exon11	c.C1391A	p.P464Q	.	.	142	5	203	0	.	421
TPH2	121278	hgsc.bcm.edu;bcgsc.ca	37	12	72416258	72416258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TPH2	NM_173353	exon9	c.C1148A	p.S383Y	.	.	74	4	111	0	.	93
TPM3	7170	bcgsc.ca	37	1	154142941	154142941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TPM3	NM_152263	exon8	c.A710G	p.E237G	.	.	130	5	75	0	.	416
TPRG1L	127262	hgsc.bcm.edu	37	1	3544177	3544177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TPRG1L	NM_182752	exon4	c.C584A	p.P195Q	.	.	95	4	118	0	.	68
TPTE2	93492	bcgsc.ca	37	13	20000613	20000613	+	Silent	SNP	A	A	G	rs76654056		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TPTE2	NM_199254	exon19	c.T1347C	p.Y449Y	.	.	172	15	231	7	.	92
TRAK1	22906	bcgsc.ca	37	3	42236354	42236354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRAK1	NM_001265608	exon10	c.A1034G	p.E345G	.	.	60	4	98	0	.	91
TRAPPC10	7109	bcgsc.ca	37	21	45496477	45496477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRAPPC10	NM_003274	exon10	c.T1345C	p.S449P	.	.	71	5	88	0	.	92
TRAPPC5	126003	hgsc.bcm.edu	37	19	7747234	7747234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRAPPC5	NM_001042461	exon2	c.T95C	p.L32P	.	.	45	4	83	0	.	68
TREM2	54209	hgsc.bcm.edu	37	6	41130810	41130810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TREM2	NM_018965	exon1	c.T11C	p.L4P	.	.	88	4	139	0	.	91
TRIM41	90933	hgsc.bcm.edu	37	5	180651055	180651055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM41	NM_201627	exon1	c.T56C	p.V19A	.	.	100	4	115	0	.	226
TRIM47	91107	bcgsc.ca	37	17	73870632	73870632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM47	NM_033452	exon6	c.A1849G	p.S617G	.	.	107	5	145	1	.	659
TRIM59	286827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160155954	160155954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM59	NM_173084	exon3	c.G1018C	p.V340L	.	.	271	85	299	0	.	658
TRIM66	9866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8642090	8642090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM66	NM_014818	exon16	c.G3047A	p.S1016N	.	.	132	34	167	0	.	68
TRIP12	9320	hgsc.bcm.edu	37	2	230643664	230643664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIP12	NM_004238	exon34	c.G4912A	p.V1638I	.	.	82	4	106	0	.	572
TRMT10C	54931	bcgsc.ca	37	3	101283690	101283690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017819	exon2	c.T65C	p.V22A	.	.	141	5	158	0	.	.
TRMT10C	54931	hgsc.bcm.edu	37	3	101284095	101284095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017819	exon2	c.G470T	p.R157M	.	.	50	4	69	0	.	.
TRPC4AP	26133	bcgsc.ca	37	20	33592350	33592350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRPC4AP	NM_015638	exon17	c.C1960A	p.R654S	.	.	164	6	201	1	.	91
TRPC7	57113	hgsc.bcm.edu	37	5	135692571	135692571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001167576	exon2	c.A505G	p.I169V	.	.	93	4	116	0	.	.
TRPM1	4308	hgsc.bcm.edu	37	15	31360167	31360167	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRPM1	NM_001252020	exon4	c.C459T	p.P153P	.	.	99	4	101	0	.	94
TRPM6	140803	bcgsc.ca	37	9	77442730	77442730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRPM6	NM_017662	exon7	c.C805A	p.L269M	.	.	144	5	194	0	.	335
TRPV6	55503	hgsc.bcm.edu	37	7	142574527	142574527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRPV6	NM_018646	exon5	c.A551G	p.E184G	.	.	119	4	148	0	.	92
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135779080	135779080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSC1	NM_000368	exon17	c.G2166T	p.K722N	.	.	82	33	94	0	.	1906
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	18	72999514	72999514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSHZ1	NM_005786	exon2	c.C2017A	p.P673T	.	.	64	4	85	0	.	90
TSNARE1	203062	hgsc.bcm.edu	37	8	143436037	143436037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSNARE1	NM_145003	exon2	c.C49T	p.P17S	.	.	64	5	58	0	.	90
TSNAXIP1	55815	hgsc.bcm.edu	37	16	67859899	67859899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSNAXIP1	NM_018430	exon9	c.A902G	p.K301R	.	.	64	4	94	0	.	90
TSPAN14	81619	hgsc.bcm.edu	37	10	82275975	82275975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSPAN14	NM_030927	exon8	c.G637T	p.D213Y	.	.	82	3	154	0	.	91
TTC40	54777	hgsc.bcm.edu;bcgsc.ca	37	10	134694527	134694527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001200049	exon28	c.A3637G	p.M1213V	.	.	51	4	91	0	.	.
TTF2	8458	bcgsc.ca	37	1	117603146	117603146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTF2	NM_003594	exon2	c.G98T	p.R33L	.	.	164	6	207	1	.	91
TTLL9	164395	hgsc.bcm.edu	37	20	30521650	30521650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTLL9	NM_001008409	exon11	c.C796A	p.H266N	.	.	98	4	123	0	.	92
TTN	7273	bcgsc.ca	37	2	179597439	179597439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTN	NM_001267550	exon56	c.C16349A	p.P5450H	.	.	133	5	98	0	.	636
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179577619	179577619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTN	NM_001267550	exon94	c.A27133G	p.T9045A	.	.	84	4	59	0	.	636
TUBGCP3	10426	hgsc.bcm.edu	37	13	113174218	113174218	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TUBGCP3	NM_006322	exon15	c.G1863A	p.L621L	.	.	92	4	97	0	.	90
TUBGCP5	114791	hgsc.bcm.edu	37	15	22873209	22873209	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TUBGCP5	NM_052903	exon23	c.T3036C	p.S1012S	.	.	100	4	100	0	.	91
TUFM	7284	hgsc.bcm.edu;bcgsc.ca	37	16	28856082	28856082	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TUFM,NS,carcinoma,-2	TUFM	NM_003321	exon5	c.C621A	p.T207T	.	.	100	4	126	0	.	91
TUT1	64852	hgsc.bcm.edu	37	11	62346379	62346379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TUT1	NM_022830	exon5	c.G928T	p.D310Y	.	.	91	4	140	0	.	91
TYRP1	7306	bcgsc.ca	37	9	12694262	12694262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TYRP1	NM_000550	exon2	c.T266C	p.V89A	.	.	54	4	137	1	.	226
UACA	55075	bcgsc.ca	37	15	70961745	70961745	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UACA	NM_018003	exon16	c.G1278T	p.L426L	.	.	160	6	230	0	.	94
UBA52	7311	bcgsc.ca	37	19	18685888	18685888	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBA52	NM_001033930	exon5	c.T315C	p.P105P	.	.	79	4	111	1	.	90
UBE3C	9690	hgsc.bcm.edu	37	7	156961778	156961778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBE3C	NM_014671	exon3	c.C157A	p.Q53K	.	.	73	4	90	0	.	704
UBN1	29855	bcgsc.ca	37	16	4909968	4909968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBN1	NM_001079514	exon6	c.G670T	p.G224C	.	.	219	6	212	0	.	92
UBR4	23352	bcgsc.ca	37	1	19403388	19403388	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon105	c.T15333C	p.P5111P	.	.	128	5	137	1	.	612
UBR4	23352	bcgsc.ca	37	1	19511778	19511778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon15	c.G1753T	p.D585Y	.	.	137	5	109	0	.	612
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19433073	19433073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon83	c.G12383T	p.W4128L	.	.	30	4	46	0	.	612
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19501462	19501462	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon21	c.C2839A	p.R947R	.	.	109	5	133	0	.	612
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19407897	19407897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon103	c.G15179A	p.R5060Q	.	.	103	11	94	0	.	612
UBXN6	80700	hgsc.bcm.edu;bcgsc.ca	37	19	4448329	4448329	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBXN6	NM_025241	exon5	c.G525T	p.V175V	.	.	65	4	71	0	.	90
UIMC1	51720	hgsc.bcm.edu	37	5	176396709	176396709	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UIMC1	NM_016290	exon6	c.358-2A>G	.	.	.	89	4	107	0	.	208
UNC13A	23025	hgsc.bcm.edu	37	19	17785490	17785490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UNC13A	NM_001080421	exon3	c.C128A	p.P43H	.	.	75	4	90	0	.	25
UNC13A	23025	hgsc.bcm.edu	37	19	17785532	17785532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UNC13A	NM_001080421	exon3	c.A86G	p.Q29R	.	.	87	4	131	0	.	25
UNC5C	8633	hgsc.bcm.edu	37	4	96104119	96104119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UNC5C	NM_003728	exon14	c.G2380A	p.V794I	.	.	98	4	155	0	.	94
UNC5D	137970	bcgsc.ca	37	8	35606089	35606089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UNC5D	NM_080872	exon12	c.C1811T	p.T604I	.	.	56	5	91	0	.	96
UNC79	57578	hgsc.bcm.edu;bcgsc.ca	37	14	94158258	94158258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020818	exon47	c.C7022A	p.P2341H	.	.	138	8	173	0	.	.
UQCC	55245	hgsc.bcm.edu	37	20	33981955	33981955	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UQCC	NM_018244	exon2	c.A69G	p.R23R	.	.	98	4	132	0	.	153
URB2	9816	broad.mit.edu	37	1	229773282	229773282	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	URB2	NM_014777	exon4	c.A2922G	p.V974V	.	.	442	8	421	2	.	174
USP1	7398	bcgsc.ca	37	1	62907279	62907279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP1	NM_001017415	exon3	c.G291T	p.Q97H	.	.	83	4	86	1	.	659
USP20	10868	hgsc.bcm.edu;bcgsc.ca	37	9	132642472	132642472	+	Missense_Mutation	SNP	C	C	A	rs200854092	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP20	NM_001008563	exon25	c.C2665A	p.R889S	.	.	50	4	112	0	C|0.999;T|0.000	658
USP25	29761	bcgsc.ca	37	21	17177489	17177489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP25	NM_013396	exon7	c.T692C	p.L231P	.	.	192	7	209	0	.	663
USP28	57646	hgsc.bcm.edu	37	11	113694377	113694377	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP28	NM_020886	exon12	c.T1233C	p.C411C	.	.	89	4	92	0	.	706
USP31	57478	hgsc.bcm.edu	37	16	23080589	23080589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon16	c.A2837G	p.E946G	.	.	96	5	103	0	.	663
USP31	57478	hgsc.bcm.edu;bcgsc.ca	37	16	23091273	23091273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon13	c.T2170C	p.Y724H	.	.	75	4	116	0	.	663
USP31	57478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23080459	23080459	+	Silent	SNP	G	G	T	rs201814190	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon16	c.C2967A	p.I989I	.	.	27	4	50	0	G|0.999;A|0.000	663
USP39	10713	broad.mit.edu;ucsc.edu	37	2	85843340	85843340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP39	NM_001256725	exon1	c.G22A	p.E8K	.	.	68	12	53	2	.	658
USP5	8078	hgsc.bcm.edu	37	12	6968664	6968664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP5	NM_003481	exon9	c.G1089T	p.Q363H	.	.	84	4	106	0	.	659
USP6	9098	broad.mit.edu	37	17	5049437	5049437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP6	NM_004505	exon20	c.C2287A	p.L763I	.	.	730	7	945	2	.	662
USP7	7874	hgsc.bcm.edu;bcgsc.ca	37	16	9015082	9015082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP7	NM_003470	exon4	c.C454A	p.R152S	.	.	134	7	148	0	.	661
VARS2	57176	broad.mit.edu	37	6	30884692	30884692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VARS2	NM_001167734	exon8	c.G799T	p.G267C	.	.	494	10	563	1	.	26
VGLL3	389136	bcgsc.ca	37	3	87027890	87027890	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VGLL3	NM_016206	exon2	c.A189G	p.Q63Q	.	.	64	5	105	0	.	90
VILL	50853	hgsc.bcm.edu;bcgsc.ca	37	3	38044030	38044030	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VILL	NM_015873	exon13	c.G1623T	p.L541L	.	.	119	7	87	0	.	90
VIM	7431	hgsc.bcm.edu	37	10	17277380	17277380	+	Missense_Mutation	SNP	G	G	T	rs150986868	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	VIM,NS,carcinoma,+2	VIM	NM_003380	exon7	c.G1221T	p.E407D	.	.	45	3	60	1	G|1.000;A|0.000	291
VNN2	8875	hgsc.bcm.edu;bcgsc.ca	37	6	133071001	133071001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VNN2	NM_004665	exon6	c.T1204C	p.C402R	.	.	93	4	115	0	.	90
VPRBP	9730	hgsc.bcm.edu	37	3	51505002	51505002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPRBP	NM_014703	exon4	c.A130G	p.K44E	.	.	99	4	119	0	.	92
VPS13C	54832	bcgsc.ca	37	15	62155702	62155702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13C	NM_020821	exon82	c.A10889G	p.E3630G	.	.	209	6	342	0	.	92
VPS13C	54832	hgsc.bcm.edu;bcgsc.ca	37	15	62202491	62202491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13C	NM_020821	exon64	c.G8729T	p.W2910L	.	.	78	4	100	0	.	92
VPS13D	55187	hgsc.bcm.edu;bcgsc.ca	37	1	12516140	12516140	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13D	NM_015378	exon66	c.C12420A	p.A4140A	.	.	62	4	84	0	.	95
VPS18	57617	hgsc.bcm.edu	37	15	41187016	41187016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS18	NM_020857	exon1	c.T50C	p.V17A	.	.	48	4	127	0	.	155
VPS25	84313	hgsc.bcm.edu;bcgsc.ca	37	17	40928289	40928289	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS25	NM_032353	exon5	c.C369A	p.S123S	.	.	121	5	174	0	.	90
VPS33B	26276	hgsc.bcm.edu;bcgsc.ca	37	15	91549273	91549273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS33B	NM_018668	exon12	c.G869A	p.R290Q	.	.	110	5	113	0	.	92
VPS37A	137492	hgsc.bcm.edu;bcgsc.ca	37	8	17126365	17126365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS37A	NM_152415	exon4	c.T316C	p.F106L	.	.	79	4	117	0	.	90
VPS41	27072	hgsc.bcm.edu	37	7	38798051	38798051	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS41	NM_014396	exon18	c.G1453T	p.G485X	.	.	95	4	150	0	.	93
VPS72	6944	hgsc.bcm.edu	37	1	151150609	151150609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS72	NM_001271087	exon5	c.G575T	p.R192L	.	.	78	4	71	0	.	154
VTCN1	79679	hgsc.bcm.edu	37	1	117690333	117690333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VTCN1	NM_024626	exon5	c.T796C	p.F266L	.	.	58	4	94	0	.	90
VWA2	340706	hgsc.bcm.edu	37	10	116045927	116045927	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VWA2	NM_001272046	exon11	c.C1227T	p.S409S	.	.	85	4	159	0	.	156
VWF	7450	bcgsc.ca	37	12	6091085	6091085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VWF	NM_000552	exon42	c.A7154G	p.K2385R	.	.	54	4	72	0	.	163
WASF1	8936	hgsc.bcm.edu;bcgsc.ca	37	6	110426738	110426738	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WASF1	NM_001024935	exon7	c.A585G	p.R195R	.	.	95	4	103	0	.	90
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70880904	70880904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WBSCR17	NM_022479	exon4	c.G619A	p.V207I	.	.	86	21	154	0	.	96
WDHD1	11169	hgsc.bcm.edu	37	14	55434060	55434060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDHD1	NM_007086	exon17	c.G2116A	p.V706I	.	.	82	4	101	0	.	91
WDR1	9948	hgsc.bcm.edu	37	4	10100740	10100740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR1	NM_017491	exon4	c.T253C	p.W85R	.	.	99	4	173	0	.	48
WDR3	10885	bcgsc.ca	37	1	118491030	118491030	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR3	NM_006784	exon13	c.A1425G	p.T475T	.	.	160	5	268	0	.	91
WDR35	57539	hgsc.bcm.edu	37	2	20133274	20133274	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR35	NM_020779	exon23	c.2548-2A>G	.	.	.	91	4	63	0	.	91
WDR60	55112	bcgsc.ca	37	7	158698748	158698748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR60	NM_018051	exon11	c.C1426A	p.R476S	.	.	151	7	115	1	.	92
WDR6	11180	hgsc.bcm.edu	37	3	49049708	49049708	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR6	NM_018031	exon2	c.G831T	p.R277R	.	.	117	5	147	0	.	90
WDR6	11180	hgsc.bcm.edu	37	3	49051271	49051271	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR6	NM_018031	exon2	c.A2394G	p.T798T	.	.	84	4	99	0	.	90
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	54349915	54349915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR7	NM_052834	exon5	c.351delC	p.Y117fs	.	.	167	41	223	0	.	93
WDR87	83889	broad.mit.edu	37	19	38380736	38380736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_031951	exon6	c.T3458C	p.V1153A	.	.	261	5	392	2	.	.
WDR88	126248	hgsc.bcm.edu	37	19	33647426	33647426	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR88	NM_173479	exon7	c.T975C	p.S325S	.	.	100	4	93	0	.	154
WDTC1	23038	hgsc.bcm.edu;bcgsc.ca	37	1	27627864	27627864	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDTC1	NM_001276252	exon13	c.A1380G	p.K460K	.	.	74	4	116	0	.	91
WFIKKN2	124857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48913333	48913333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WFIKKN2	NM_175575	exon1	c.G35A	p.R12H	.	.	110	41	127	0	.	93
WIZ	58525	hgsc.bcm.edu	37	19	15533977	15533977	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WIZ	NM_021241	exon8	c.C2295T	p.H765H	.	.	55	4	72	0	.	68
WNK1	65125	hgsc.bcm.edu	37	12	988759	988759	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WNK1	NM_018979	exon11	c.A2394G	p.V798V	.	.	98	4	103	0	.	916
WNK2	65268	hgsc.bcm.edu	37	9	96079837	96079837	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WNK2	NM_006648	exon28	c.T6552C	p.R2184R	.	.	96	4	131	0	.	765
WNT7A	7476	hgsc.bcm.edu	37	3	13860913	13860913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WNT7A	NM_004625	exon4	c.A578G	p.E193G	.	.	59	4	62	0	.	948
WNT7B	7477	hgsc.bcm.edu	37	22	46319021	46319021	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WNT7B	NM_058238	exon4	c.A765G	p.K255K	.	.	86	4	149	0	.	522
WT1	7490	hgsc.bcm.edu	37	11	32452076	32452076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WT1	NM_001198551	exon1	c.G10A	p.G4S	.	.	63	4	104	0	.	6891
WWP1	11059	hgsc.bcm.edu	37	8	87439874	87439874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WWP1	NM_007013	exon11	c.G1160T	p.W387L	.	.	130	6	129	0	.	659
XIRP1	165904	hgsc.bcm.edu;bcgsc.ca	37	3	39229162	39229162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XIRP1	NM_001198621	exon2	c.A1775G	p.Q592R	.	.	134	8	189	0	.	158
XIRP2	129446	hgsc.bcm.edu	37	2	168107554	168107554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XIRP2	NM_152381	exon9	c.C9652T	p.P3218S	.	.	101	4	140	0	.	104
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28167437	28167437	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XPO6	NM_015171	exon7	c.A1055T	p.N352I	.	.	544	173	773	0	.	227
XPR1	9213	broad.mit.edu	37	1	180794021	180794021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XPR1	NM_004736	exon8	c.A896G	p.H299R	.	.	482	7	475	1	.	90
XRCC2	7516	bcgsc.ca	37	7	152345917	152345917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XRCC2	NM_005431	exon3	c.A653G	p.D218G	.	.	127	5	157	1	.	1084
YEATS2	55689	hgsc.bcm.edu	37	3	183521785	183521785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	YEATS2	NM_018023	exon27	c.C3593A	p.A1198E	.	.	111	5	129	0	.	138
YY2	404281	bcgsc.ca	37	X	21875562	21875562	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	YY2	NM_206923	exon1	c.A960G	p.K320K	.	.	98	6	141	1	.	193
ZAP70	7535	hgsc.bcm.edu	37	2	98349776	98349776	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZAP70	NM_001079	exon7	c.A807G	p.T269T	.	.	124	6	191	0	.	955
ZBTB42	100128927	bcgsc.ca	37	14	105267670	105267670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001137601	exon2	c.A136G	p.S46G	.	.	29	6	65	0	.	.
ZBTB4	57659	hgsc.bcm.edu	37	17	7370026	7370026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZBTB4	NM_001128833	exon3	c.T95C	p.V32A	.	.	67	4	113	0	.	93
ZBTB7C	201501	hgsc.bcm.edu	37	18	45566520	45566520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZBTB7C	NM_001039360	exon2	c.G959T	p.G320V	.	.	57	4	58	0	.	91
ZC3H12D	340152	mdanderson.org	37	6	149772165	149772165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_207360	exon6	c.C1238A	p.P413Q	.	.	18	3	36	0	.	.
ZC3HAV1	56829	bcgsc.ca	37	7	138749735	138749735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZC3HAV1	NM_024625	exon8	c.G1883T	p.R628L	.	.	168	6	121	0	.	91
ZDHHC1	29800	hgsc.bcm.edu;bcgsc.ca	37	16	67432186	67432186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZDHHC1	NM_013304	exon8	c.C856A	p.R286S	.	.	61	4	78	0	.	90
ZIC3	7547	hgsc.bcm.edu;bcgsc.ca	37	X	136649847	136649847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZIC3	NM_003413	exon1	c.C997A	p.P333T	.	.	125	5	199	0	.	195
ZKSCAN7	55888	bcgsc.ca	37	3	44611434	44611434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_018651	exon6	c.G832T	p.G278C	.	.	197	6	286	0	.	.
ZNF107	51427	hgsc.bcm.edu;bcgsc.ca	37	7	64166707	64166707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF107	NM_016220	exon7	c.T25C	p.S9P	.	.	63	4	78	0	.	69
ZNF10	7556	hgsc.bcm.edu	37	12	133732852	133732852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF10	NM_015394	exon5	c.G1020T	p.Q340H	.	.	75	4	100	0	.	154
ZNF132	7691	hgsc.bcm.edu;bcgsc.ca	37	19	58945140	58945140	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF132	NM_003433	exon3	c.T1671C	p.T557T	.	.	91	4	166	0	.	92
ZNF175	7728	bcgsc.ca	37	19	52090055	52090055	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF175	NM_007147	exon5	c.T471C	p.S157S	.	.	143	5	196	2	.	90
ZNF185	7739	hgsc.bcm.edu	37	X	152128427	152128427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF185	NM_001178106	exon18	c.A1687G	p.S563G	.	.	53	4	73	0	.	133
ZNF18	7566	hgsc.bcm.edu	37	17	11896054	11896054	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF18	NM_144680	exon4	c.A93G	p.Q31Q	.	.	95	4	96	0	.	90
ZNF208	7757	hgsc.bcm.edu	37	19	22155050	22155050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF208	NM_007153	exon4	c.T2786C	p.L929S	.	.	127	6	179	0	.	7
ZNF229	7772	hgsc.bcm.edu;bcgsc.ca	37	19	44934658	44934658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF229	NM_014518	exon6	c.C298A	p.H100N	.	.	95	4	118	0	.	94
ZNF234	10780	bcgsc.ca	37	19	44661365	44661365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_006630	exon6	c.C1196T	p.P399L	.	.	102	4	205	0	.	.
ZNF248	57209	hgsc.bcm.edu;bcgsc.ca	37	10	38126943	38126943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF248	NM_001267606	exon2	c.C112A	p.L38M	.	.	96	4	148	0	.	91
ZNF337	26152	hgsc.bcm.edu	37	20	25656557	25656557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF337	NM_015655	exon5	c.A1367G	p.E456G	.	.	96	4	136	0	.	90
ZNF33A	7581	hgsc.bcm.edu	37	10	38343701	38343701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF33A	NM_006954	exon5	c.C649A	p.H217N	.	.	118	5	142	0	.	93
ZNF33B	7582	hgsc.bcm.edu;bcgsc.ca	37	10	43088543	43088543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF33B	NM_006955	exon5	c.T1855C	p.C619R	.	.	121	5	129	0	.	90
ZNF341	84905	hgsc.bcm.edu;bcgsc.ca	37	20	32328755	32328755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF341	NM_032819	exon2	c.C79A	p.Q27K	.	.	55	4	105	0	.	92
ZNF345	25850	hgsc.bcm.edu	37	19	37368101	37368101	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF345	NM_001242476	exon4	c.T369C	p.C123C	.	.	99	4	98	0	.	91
ZNF346	23567	hgsc.bcm.edu;bcgsc.ca	37	5	176477805	176477805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF346	NM_012279	exon5	c.C571T	p.H191Y	.	.	71	4	129	0	.	90
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178506014	178506014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF354C	NM_014594	exon5	c.G581T	p.G194V	.	.	70	5	71	0	.	91
ZNF37BP	100129482	ucsc.edu;bcgsc.ca	37	10	43015384	43015384	+	RNA	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	.	.	.	.	.	.	71	22	129	0	.	.
ZNF418	147686	hgsc.bcm.edu	37	19	58438656	58438656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF418	NM_133460	exon4	c.A893G	p.K298R	.	.	100	4	117	0	.	90
ZNF429	353088	hgsc.bcm.edu;bcgsc.ca	37	19	21712459	21712459	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF429	NM_001001415	exon2	c.4-1G>T	.	.	.	59	4	109	0	.	516
ZNF431	170959	hgsc.bcm.edu	37	19	21366793	21366793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF431	NM_133473	exon5	c.T1687C	p.W563R	.	.	99	4	157	0	.	514
ZNF446	55663	hgsc.bcm.edu	37	19	58988926	58988926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF446	NM_017908	exon2	c.G341T	p.W114L	.	.	90	4	105	0	.	91
ZNF460	10794	hgsc.bcm.edu	37	19	57802158	57802158	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF460	NM_006635	exon3	c.A249G	p.G83G	.	.	80	4	111	0	.	90
ZNF521	25925	hgsc.bcm.edu;bcgsc.ca	37	18	22806400	22806400	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF521,NS,carcinoma,-2	ZNF521	NM_015461	exon4	c.A1482G	p.E494E	.	.	135	6	183	0	.	275
ZNF557	79230	hgsc.bcm.edu	37	19	7083073	7083073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF557	NM_001044387	exon8	c.G611T	p.G204V	.	.	99	4	158	0	.	92
ZNF565	147929	bcgsc.ca	37	19	36674361	36674361	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF565	NM_001042474	exon5	c.T507C	p.C169C	.	.	193	6	295	0	.	92
ZNF565	147929	hgsc.bcm.edu	37	19	36685225	36685225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF565	NM_001042474	exon4	c.T142C	p.S48P	.	.	73	4	104	0	.	92
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37677107	37677107	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF585B	NM_152279	exon5	c.G1332A	p.G444G	.	.	198	61	243	0	.	91
ZNF609	23060	bcgsc.ca	37	15	64970622	64970622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF609	NM_015042	exon5	c.A3710G	p.Y1237C	.	.	93	5	185	0	.	92
ZNF629	23361	hgsc.bcm.edu	37	16	30793344	30793344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001080417	exon3	c.C2305A	p.R769S	.	.	89	4	89	0	.	.
ZNF655	79027	hgsc.bcm.edu;bcgsc.ca	37	7	99169920	99169920	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF655	NM_001085368	exon4	c.G294T	p.S98S	.	.	123	5	64	0	.	91
ZNF675	171392	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23836432	23836432	+	Silent	SNP	G	G	T	rs199957959	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF675	NM_138330	exon4	c.C1303A	p.R435R	.	.	33	4	54	0	G|0.999;A|0.001	228
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3367499	3367499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF75A	NM_153028	exon6	c.C521G	p.S174C	.	.	199	62	220	0	.	153
ZNF763	284390	bcgsc.ca	37	19	12089662	12089662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF763	NM_001012753	exon4	c.G932T	p.G311V	.	.	148	5	232	0	.	90
ZNF766	90321	broad.mit.edu;bcgsc.ca	37	19	52793363	52793363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001010851	exon4	c.A319G	p.T107A	.	.	236	7	311	0	.	.
ZNF813	126017	bcgsc.ca	37	19	53995033	53995033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF813	NM_001004301	exon4	c.T1547C	p.L516P	.	.	128	5	149	0	.	67
ZNF831	128611	bcgsc.ca	37	20	57767078	57767078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF831	NM_178457	exon1	c.G1004T	p.R335L	.	.	61	5	65	0	.	126
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102805186	102805186	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF839	NM_018335	exon6	c.C1693A	p.R565R	.	.	149	35	217	0	.	91
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca	37	19	52569527	52569527	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001136499	exon7	c.C1608A	p.T536T	.	.	79	4	74	0	.	.
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca	37	19	52570470	52570470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001136499	exon7	c.C665A	p.P222Q	.	.	76	4	103	0	.	.
ZNF85	7639	hgsc.bcm.edu;bcgsc.ca	37	19	21132473	21132473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF85	NM_001256171	exon5	c.C1243A	p.L415I	.	.	72	4	82	0	.	514
ZNF90	7643	hgsc.bcm.edu	37	19	20228952	20228952	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF90	NM_007138	exon4	c.G589T	p.G197X	.	.	58	4	86	0	.	48
ZNF91	7644	hgsc.bcm.edu	37	19	23544210	23544210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF91	NM_003430	exon4	c.G1571A	p.G524D	.	.	89	4	77	0	.	90
ZNF99	7652	bcgsc.ca	37	19	22952127	22952127	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF99	NM_001080409	exon3	c.4-1G>T	.	.	.	152	6	197	0	.	24
ZNRF3	84133	hgsc.bcm.edu	37	22	29445350	29445350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNRF3	NM_001206998	exon8	c.T1181C	p.V394A	.	.	101	5	81	0	.	69
ZUFSP	221302	hgsc.bcm.edu	37	6	116988328	116988328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZUFSP	NM_145062	exon2	c.A28G	p.T10A	.	.	99	4	120	0	.	69
