Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADAT	51166	hgsc.bcm.edu;bcgsc.ca	37	4	170999725	170999725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AADAT	NM_182662	exon5	c.A379G	p.M127V	.	.	67	4	102	0	.	90
ABCA12	26154	hgsc.bcm.edu;bcgsc.ca	37	2	215797448	215797448	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA12	NM_173076	exon53	c.C7698A	p.A2566A	.	.	96	4	106	0	.	99
ABCA13	154664	hgsc.bcm.edu;bcgsc.ca	37	7	48312768	48312768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA13	NM_152701	exon17	c.A3505G	p.M1169V	.	.	97	5	113	0	.	521
ABCA4	24	hgsc.bcm.edu;bcgsc.ca	37	1	94517230	94517230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA4	NM_000350	exon17	c.G2612T	p.W871L	.	.	102	5	154	0	.	162
ABCC8	6833	hgsc.bcm.edu	37	11	17428527	17428527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCC8	NM_000352	exon25	c.A3070G	p.M1024V	.	.	95	4	151	0	.	91
ACAN	176	hgsc.bcm.edu	37	15	89398363	89398363	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ACAN	NM_001135	exon12	c.C2547T	p.P849P	.	.	110	5	142	0	.	25
ACE	1636	hgsc.bcm.edu	37	17	61561702	61561702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ACE	NM_000789	exon12	c.A1721G	p.Q574R	.	.	78	4	97	0	.	94
ACIN1	22985	bcgsc.ca	37	14	23548913	23548913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ACIN1	NM_001164814	exon6	c.G1805T	p.R602L	.	.	228	6	375	1	.	156
ACOT11	26027	hgsc.bcm.edu	37	1	55050328	55050328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ACOT11	NM_147161	exon2	c.G34T	p.G12C	.	.	87	4	148	0	.	90
ACSM5	54988	bcgsc.ca	37	16	20439177	20439177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ACSM5	NM_017888	exon7	c.A989G	p.E330G	.	.	68	4	112	0	.	70
ADAM18	8749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39495084	39495084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM18	NM_014237	exon9	c.T689C	p.I230T	.	.	182	81	173	0	.	228
ADAM20	8748	hgsc.bcm.edu;bcgsc.ca	37	14	70989894	70989894	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM20	NM_003814	exon2	c.T1731C	p.S577S	.	.	85	5	125	0	.	226
ADAM33	80332	hgsc.bcm.edu	37	20	3655209	3655209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM33	NM_025220	exon6	c.A542G	p.H181R	.	.	57	4	48	0	.	291
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28296553	28296553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAMTS5	NM_007038	exon8	c.G2612T	p.G871V	.	.	133	51	104	0	.	229
ADCK2	90956	bcgsc.ca	37	7	140386944	140386944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADCK2	NM_052853	exon5	c.T1460C	p.L487P	.	.	146	6	188	1	.	333
ADCK2	90956	hgsc.bcm.edu	37	7	140373468	140373468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADCK2	NM_052853	exon1	c.T338C	p.L113P	.	.	68	4	83	0	.	333
ADHFE1	137872	bcgsc.ca	37	8	67357462	67357462	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADHFE1	NM_144650	exon6	c.A363G	p.E121E	.	.	205	6	149	1	.	290
AFTPH	54812	hgsc.bcm.edu	37	2	64779485	64779485	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AFTPH	NM_017657	exon2	c.G877T	p.G293X	.	.	148	6	154	0	.	70
AGBL5	60509	hgsc.bcm.edu	37	2	27279548	27279548	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGBL5	NM_021831	exon8	c.C1423T	p.Q475X	.	.	76	4	63	0	.	154
AGGF1	55109	bcgsc.ca	37	5	76332464	76332464	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGGF1	NM_018046	exon4	c.G600T	p.A200A	.	.	286	10	234	1	.	117
AGL	178	hgsc.bcm.edu	37	1	100366213	100366213	+	Silent	SNP	G	G	T	rs149393587	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGL	NM_000644	exon26	c.G3384T	p.A1128A	.	.	106	6	163	0	G|0.997;A|0.003	92
AGMAT	79814	hgsc.bcm.edu;bcgsc.ca	37	1	15901266	15901266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGMAT	NM_024758	exon6	c.C971A	p.P324Q	.	.	64	4	83	0	.	91
AGO2	27161	hgsc.bcm.edu	37	8	141542567	141542567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_012154	exon18	c.C2419A	p.H807N	.	.	95	4	72	0	.	.
AGO3	192669	hgsc.bcm.edu;bcgsc.ca	37	1	36439085	36439085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_024852	exon5	c.A631G	p.M211V	.	.	139	6	236	0	.	.
AGO4	192670	hgsc.bcm.edu	37	1	36298149	36298149	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_017629	exon11	c.C1357T	p.Q453X	.	.	82	4	119	0	.	.
AGRN	375790	hgsc.bcm.edu	37	1	981185	981185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGRN	NM_198576	exon15	c.C2609T	p.P870L	.	.	79	4	149	0	.	136
AGTRAP	57085	bcgsc.ca	37	1	11808515	11808515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGTRAP	NM_001040194	exon4	c.A212G	p.H71R	.	.	64	4	137	1	.	91
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	15	86286858	86286858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AKAP13	NM_006738	exon36	c.A8206G	p.N2736D	.	.	78	4	129	0	.	258
AKAP9	10142	hgsc.bcm.edu	37	7	91712764	91712764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AKAP9	NM_005751	exon33	c.C8441A	p.S2814X	.	.	73	4	118	0	.	755
ALDH2	217	hgsc.bcm.edu	37	12	112204899	112204899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALDH2	NM_001204889	exon1	c.A113G	p.Q38R	.	.	14	5	5	0	.	228
ALMS1	7840	bcgsc.ca	37	2	73680249	73680249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALMS1	NM_015120	exon8	c.T6592C	p.S2198P	.	.	182	7	199	0	.	142
ALMS1	7840	hgsc.bcm.edu	37	2	73680043	73680043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALMS1	NM_015120	exon8	c.A6386G	p.Q2129R	.	.	99	4	94	0	.	142
ALPK1	80216	hgsc.bcm.edu	37	4	113360847	113360847	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALPK1	NM_001102406	exon14	c.A3357G	p.L1119L	.	.	89	4	148	0	.	337
ALPL	249	hgsc.bcm.edu	37	1	21894730	21894730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALPL	NM_000478	exon7	c.C782A	p.P261Q	.	.	101	5	159	0	.	94
ALS2CR8	79800	bcgsc.ca	37	2	203836340	203836340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALS2CR8	NM_024744	exon12	c.A1210G	p.T404A	.	.	150	5	170	0	.	136
ANK2	287	hgsc.bcm.edu	37	4	114095576	114095576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANK2	NM_001148	exon2	c.A89G	p.D30G	.	.	95	4	200	0	.	583
ANK2	287	hgsc.bcm.edu;bcgsc.ca	37	4	114279607	114279607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANK2	NM_001148	exon38	c.C9833A	p.P3278Q	.	.	116	6	146	0	.	583
ANKIB1	54467	bcgsc.ca	37	7	91936683	91936683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKIB1	NM_019004	exon3	c.G199T	p.G67C	.	.	100	4	153	1	.	432
ANKK1	255239	hgsc.bcm.edu	37	11	113266922	113266922	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKK1	NM_178510	exon5	c.C816A	p.P272P	.	.	104	5	121	0	.	628
ANKLE2	23141	hgsc.bcm.edu;bcgsc.ca	37	12	133313525	133313525	+	Missense_Mutation	SNP	G	G	T	rs201586661	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKLE2	NM_015114	exon8	c.C1547A	p.P516Q	.	.	76	4	64	0	.	68
ANKRD27	84079	hgsc.bcm.edu	37	19	33140643	33140643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKRD27	NM_032139	exon3	c.T158C	p.F53S	.	.	99	4	72	0	.	95
ANKS1A	23294	hgsc.bcm.edu	37	6	35047653	35047653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKS1A	NM_015245	exon16	c.A2492G	p.D831G	.	.	91	4	71	0	.	94
ANO6	196527	bcgsc.ca	37	12	45833493	45833493	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANO6	NM_001142679	exon20	c.C2562T	p.G854G	.	.	76	5	88	1	.	516
ANPEP	290	hgsc.bcm.edu	37	15	90346884	90346884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANPEP	NM_001150	exon8	c.C1431A	p.Y477X	.	.	96	4	111	0	.	94
ANXA13	312	bcgsc.ca	37	8	124710696	124710696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANXA13	NM_001003954	exon5	c.A413G	p.K138R	.	.	160	5	154	0	.	93
ANXA13	312	hgsc.bcm.edu;bcgsc.ca	37	8	124693533	124693533	+	Missense_Mutation	SNP	G	G	T	rs201212750	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANXA13	NM_001003954	exon12	c.C1021A	p.R341S	.	.	124	5	153	0	G|0.999;A|0.000	93
ANXA2P3	305	bcgsc.ca	37	10	66586245	66586245	+	RNA	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	.	.	.	.	.	.	65	4	57	0	.	.
AP1AR	55435	hgsc.bcm.edu;bcgsc.ca	37	4	113174413	113174413	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP1AR	NM_001128426	exon2	c.132+1G>A	.	.	.	83	5	126	0	.	90
AP3D1	8943	hgsc.bcm.edu;bcgsc.ca	37	19	2138617	2138617	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP3D1	NM_003938	exon3	c.192+1G>A	.	.	.	101	7	72	0	.	90
AP4M1	9179	hgsc.bcm.edu	37	7	99701748	99701748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP4M1	NM_004722	exon7	c.G577T	p.E193X	.	.	84	4	122	0	.	90
APIP	51074	ucsc.edu;bcgsc.ca	37	11	34904914	34904914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	APIP	NM_015957	exon6	c.G599T	p.W200L	.	.	528	179	537	3	.	226
AQP3	360	bcgsc.ca	37	9	33443839	33443839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AQP3	NM_004925	exon2	c.G160T	p.G54C	.	.	144	6	89	3	.	90
AQP5	362	bcgsc.ca	37	12	50357276	50357276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AQP5	NM_001651	exon2	c.T365C	p.L122P	.	.	136	5	123	0	.	90
AR	367	hgsc.bcm.edu;bcgsc.ca	37	X	66766306	66766306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AR	NM_000044	exon1	c.A1318G	p.T440A	.	.	43	4	45	0	.	661
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47430811	47430811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARAF	NM_001256196	exon16	c.T1785A	p.D595E	.	.	146	73	137	0	.	1557
ARFGEF2	10564	bcgsc.ca	37	20	47630100	47630100	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARFGEF2	NM_006420	exon29	c.3919-1G>T	.	.	.	166	5	100	0	.	358
ARHGAP11A	9824	bcgsc.ca	37	15	32928757	32928757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGAP11A	NM_014783	exon12	c.A1783G	p.T595A	.	.	130	5	162	0	.	292
ARHGAP20	57569	hgsc.bcm.edu;bcgsc.ca	37	11	110479748	110479748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGAP20	NM_020809	exon9	c.G735T	p.W245C	.	.	102	5	124	0	.	230
ARHGEF11	9826	hgsc.bcm.edu	37	1	156908262	156908262	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGEF11	NM_198236	exon38	c.T4140C	p.S1380S	.	.	117	6	106	0	.	233
ARHGEF28	64283	hgsc.bcm.edu	37	5	73163834	73163834	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001080479	exon19	c.C2286T	p.T762T	.	.	93	4	103	0	.	.
ARHGEF2	9181	bcgsc.ca	37	1	155931957	155931957	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGEF2	NM_001162383	exon10	c.G1158T	p.L386L	.	.	131	5	85	0	.	228
ARHGEF37	389337	hgsc.bcm.edu	37	5	148980735	148980735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGEF37	NM_001001669	exon3	c.G251T	p.R84I	.	.	89	4	85	0	.	90
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106505	27106506	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARID1A	NM_006015	exon20	c.6116_6117insT	p.Q2039fs	.	.	171	126	276	0	.	584
ART1	417	hgsc.bcm.edu;broad.mit.edu	37	11	3681383	3681383	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ART1	NM_004314	exon3	c.C634T	p.Q212X	.	.	138	6	124	0	.	90
ASIC3	9311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150747908	150747908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_020322	exon4	c.C877G	p.P293A	.	.	66	15	64	0	.	.
ASTE1	28990	hgsc.bcm.edu	37	3	130735171	130735171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ASTE1	NM_014065	exon5	c.T1526C	p.L509P	.	.	119	5	119	0	.	90
ATAD3A	55210	bcgsc.ca	37	1	1455608	1455608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATAD3A	NM_018188	exon6	c.G746T	p.R249L	.	.	217	7	367	0	.	91
ATG2B	55102	hgsc.bcm.edu	37	14	96781572	96781572	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATG2B	NM_018036	exon24	c.3562-1G>T	.	.	.	98	4	205	0	.	93
ATHL1	80162	hgsc.bcm.edu	37	11	292027	292027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATHL1	NM_025092	exon5	c.G958A	p.A320T	.	.	55	4	78	0	.	516
ATP11B	23200	broad.mit.edu	37	3	182598747	182598747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP11B	NM_014616	exon21	c.A2487G	p.I829M	.	.	1056	9	1050	0	.	93
ATP12A	479	hgsc.bcm.edu	37	13	25276160	25276160	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP12A	NM_001185085	exon14	c.G1987T	p.E663X	.	.	107	5	112	0	.	137
ATP13A5	344905	bcgsc.ca	37	3	193028471	193028471	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP13A5	NM_198505	exon21	c.T2481C	p.S827S	.	.	80	4	98	1	.	144
ATP2A1	487	hgsc.bcm.edu;bcgsc.ca	37	16	28914131	28914131	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A1	NM_004320	exon19	c.C2643A	p.T881T	.	.	121	5	160	0	.	93
ATP2A2	488	bcgsc.ca	37	12	110729920	110729920	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A2	NM_001681	exon4	c.T315C	p.G105G	.	.	161	6	178	1	.	94
ATP2A2	488	hgsc.bcm.edu;bcgsc.ca	37	12	110729905	110729905	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A2	NM_001681	exon4	c.C300A	p.A100A	.	.	200	8	217	0	.	94
ATP4B	496	broad.mit.edu	37	13	114307744	114307744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP4B	NM_000705	exon3	c.A247G	p.T83A	.	.	366	6	367	1	.	91
ATP5J2-PTCD1	100526740	hgsc.bcm.edu	37	7	99032620	99032620	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001198879	exon3	c.C393T	p.D131D	.	.	83	4	114	0	.	.
ATP6V0C	527	hgsc.bcm.edu	37	16	2564163	2564163	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP6V0C	NM_001198569	exon2	c.C59A	p.S20X	.	.	88	5	98	0	.	91
ATP7B	540	bcgsc.ca	37	13	52515351	52515351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP7B	NM_000053	exon16	c.C3422A	p.P1141H	.	.	127	5	148	0	.	92
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26273474	26273474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP8A2	NM_016529	exon25	c.T2375C	p.I792T	.	.	90	48	91	0	.	138
ATR	545	hgsc.bcm.edu;bcgsc.ca	37	3	142281918	142281918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATR	NM_001184	exon4	c.G326T	p.R109L	.	.	83	4	87	0	.	1139
ATRIP	84126	hgsc.bcm.edu	37	3	48502119	48502119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATRIP	NM_130384	exon8	c.C1666T	p.L556F	.	.	87	5	105	0	.	23
B4GALNT4	338707	hgsc.bcm.edu	37	11	377296	377296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	B4GALNT4	NM_178537	exon14	c.T2173C	p.Y725H	.	.	91	4	79	0	.	91
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104130448	104130448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAAT	NM_001127610	exon3	c.T623C	p.L208S	.	.	142	65	118	0	.	228
BAG6	7917	hgsc.bcm.edu	37	6	31608658	31608658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAG6	NM_004639	exon20	c.G2755A	p.G919R	.	.	83	4	61	0	.	154
BAI3	577	hgsc.bcm.edu	37	6	69684659	69684659	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAI3	NM_001704	exon9	c.T1530C	p.P510P	.	.	147	6	112	0	.	1148
BAZ2A	11176	hgsc.bcm.edu	37	12	56992704	56992704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAZ2A	NM_013449	exon28	c.A5500G	p.I1834V	.	.	65	4	64	0	.	22
BCAS3	54828	hgsc.bcm.edu	37	17	59024696	59024696	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BCAS3	NM_001099432	exon14	c.G1204T	p.G402X	.	.	65	4	78	0	.	495
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;bcgsc.ca	37	14	23794468	23794468	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001199864	exon9	c.A975G	p.R325R	.	.	109	5	201	0	.	.
BEND4	389206	hgsc.bcm.edu	37	4	42127600	42127600	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BEND4	NM_001159547	exon4	c.G1146A	p.E382E	.	.	78	4	137	0	.	90
BHLHA15	168620	hgsc.bcm.edu;bcgsc.ca	37	7	97842082	97842082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BHLHA15	NM_177455	exon1	c.A461G	p.Q154R	.	.	73	4	102	0	.	90
BIRC3	330	hgsc.bcm.edu	37	11	102206786	102206786	+	Nonsense_Mutation	SNP	G	G	T	rs145025961	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BIRC3	NM_001165	exon7	c.G1414T	p.G472X	.	.	127	7	115	0	G|1.000;A|0.000	662
BLM	641	hgsc.bcm.edu;bcgsc.ca	37	15	91304196	91304196	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BLM	NM_000057	exon7	c.A1593G	p.K531K	.	.	93	4	112	0	.	664
BMP2	650	bcgsc.ca	37	20	6759431	6759431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BMP2	NM_001200	exon3	c.T886C	p.C296R	.	.	255	8	235	2	.	1044
BMPER	168667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34101636	34101636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BMPER	NM_133468	exon12	c.G1055T	p.G352V	.	.	102	44	151	1	.	92
BOD1L1	259282	hgsc.bcm.edu;bcgsc.ca	37	4	13602619	13602619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_148894	exon10	c.A5905G	p.T1969A	.	.	63	4	99	0	.	.
BPNT1	10380	bcgsc.ca	37	1	220247413	220247413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BPNT1	NM_006085	exon3	c.A121G	p.T41A	.	.	175	7	86	2	.	91
BRCA2	675	hgsc.bcm.edu	37	13	32950834	32950834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BRCA2	NM_000059	exon21	c.C8660T	p.S2887L	.	.	89	4	89	0	.	3153
BRD8	10902	broad.mit.edu	37	5	137497515	137497515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BRD8	NM_006696	exon18	c.T2438C	p.I813T	.	.	306	5	270	0	.	91
BTRC	8945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103281409	103281409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BTRC	NM_033637	exon5	c.A338T	p.N113I	.	.	148	53	99	0	.	659
C10orf118	55088	broad.mit.edu	37	10	115910854	115910854	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C10orf118	NM_018017	exon4	c.A885G	p.E295E	.	.	677	9	459	0	.	92
C10orf12	26148	hgsc.bcm.edu;bcgsc.ca	37	10	98741962	98741962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C10orf12	NM_015652	exon1	c.T815C	p.V272A	.	.	108	6	86	0	.	92
C12orf50	160419	hgsc.bcm.edu	37	12	88376940	88376940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C12orf50	NM_152589	exon12	c.G1159A	p.A387T	.	.	82	4	94	0	.	93
C14orf159	80017	hgsc.bcm.edu	37	14	91655256	91655256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C14orf159	NM_001102368	exon9	c.A937G	p.N313D	.	.	45	4	68	0	.	92
C14orf166	51637	hgsc.bcm.edu	37	14	52471128	52471128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C14orf166	NM_016039	exon8	c.A629G	p.E210G	.	.	96	5	144	0	.	90
C17orf104	284071	hgsc.bcm.edu	37	17	42744141	42744141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C17orf104	NM_001145080	exon5	c.T862C	p.Y288H	.	.	100	4	74	0	.	22
C17orf75	64149	hgsc.bcm.edu	37	17	30666839	30666839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C17orf75	NM_022344	exon3	c.G340T	p.E114X	.	.	88	4	82	0	.	23
C18orf42	642597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	5145618	5145618	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145194	exon2	c.C153T	p.N51N	.	.	257	145	283	2	.	.
C19orf21	126353	ucsc.edu	37	19	758007	758007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C19orf21	NM_173481	exon2	c.A1061G	p.D354G	.	.	27	4	25	1	.	91
C1orf87	127795	hgsc.bcm.edu	37	1	60503758	60503758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C1orf87	NM_152377	exon6	c.T769C	p.W257R	.	.	86	4	154	0	.	154
C22orf29	79680	hgsc.bcm.edu	37	22	19839039	19839039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C22orf29	NM_024627	exon3	c.T746C	p.V249A	.	.	88	4	102	0	.	90
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27803792	27803792	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C2orf16	NM_032266	exon1	c.T4353C	p.P1451P	.	.	73	4	68	0	.	67
C2orf54	79919	hgsc.bcm.edu	37	2	241826548	241826548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C2orf54	NM_001085437	exon5	c.G1283T	p.R428L	.	.	71	4	93	0	.	90
C2orf81	388963	hgsc.bcm.edu;bcgsc.ca	37	2	74643206	74643206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145054	exon2	c.G190T	p.G64W	.	.	64	4	82	0	.	.
C8A	731	bcgsc.ca	37	1	57383356	57383356	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C8A	NM_000562	exon11	c.T1722C	p.C574C	.	.	197	6	314	4	.	92
C8B	732	hgsc.bcm.edu	37	1	57406626	57406626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C8B	NM_000066	exon9	c.A1294G	p.S432G	.	.	98	3	134	0	.	92
CACNA1I	8911	bcgsc.ca	37	22	40059803	40059803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CACNA1I	NM_021096	exon19	c.T3554C	p.I1185T	.	.	291	8	378	1	.	135
CACNA1I	8911	hgsc.bcm.edu;bcgsc.ca	37	22	39994207	39994207	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CACNA1I	NM_001003406	exon2	c.T288C	p.L96L	.	.	98	4	140	0	.	135
CACTIN	58509	hgsc.bcm.edu	37	19	3626642	3626642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_021231	exon1	c.G119A	p.R40Q	.	.	36	5	29	0	.	.
CADM2	253559	hgsc.bcm.edu;bcgsc.ca	37	3	85932563	85932563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADM2	NM_001167675	exon4	c.361delA	p.K121fs	.	.	126	29	161	0	.	228
CADM2	253559	hgsc.bcm.edu;bcgsc.ca	37	3	85932567	85932567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADM2	NM_001167675	exon4	c.C365T	p.T122I	.	.	121	31	157	0	.	228
CADPS	8618	hgsc.bcm.edu	37	3	62459862	62459862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADPS	NM_003716	exon24	c.G3463A	p.E1155K	.	.	70	4	64	0	.	281
CAMK2G	818	hgsc.bcm.edu	37	10	75607747	75607747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CAMK2G	NM_172169	exon9	c.A695G	p.D232G	.	.	102	5	70	0	.	358
CAND1	55832	hgsc.bcm.edu;bcgsc.ca	37	12	67699020	67699020	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CAND1	NM_018448	exon10	c.G1572T	p.V524V	.	.	173	7	163	0	.	516
CAPN13	92291	bcgsc.ca	37	2	30975945	30975945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CAPN13	NM_144575	exon10	c.A1061G	p.K354R	.	.	175	5	182	0	.	136
CARHSP1	23589	bcgsc.ca	37	16	8952273	8952273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CARHSP1	NM_001042476	exon3	c.G215T	p.R72L	.	.	51	4	77	0	.	90
CBL	867	bcgsc.ca	37	11	119103321	119103321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CBL	NM_005188	exon2	c.A359G	p.E120G	.	.	193	6	166	1	.	4020
CBLB	868	bcgsc.ca	37	3	105586370	105586370	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CBLB	NM_170662	exon2	c.C52A	p.R18R	.	.	124	5	125	1	.	849
CBLN1	869	hgsc.bcm.edu;bcgsc.ca	37	16	49313350	49313350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CBLN1	NM_004352	exon3	c.T547C	p.S183P	.	.	133	6	214	0	.	90
CC2D2A	57545	bcgsc.ca	37	4	15559008	15559008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CC2D2A	NM_001080522	exon22	c.C2707A	p.Q903K	.	.	130	5	198	1	.	25
CCDC134	79879	hgsc.bcm.edu	37	22	42205910	42205910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC134	NM_024821	exon3	c.G131T	p.R44L	.	.	95	4	131	0	.	92
CCDC141	285025	bcgsc.ca	37	2	179718221	179718221	+	Missense_Mutation	SNP	G	G	T	rs150440298	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC141	NM_173648	exon20	c.C3191A	p.P1064Q	.	.	186	6	247	0	G|0.999;A|0.001	78
CCDC158	339965	hgsc.bcm.edu;bcgsc.ca	37	4	77255317	77255317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC158	NM_001042784	exon18	c.T2668C	p.S890P	.	.	124	5	174	0	.	96
CCDC19	25790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159846466	159846466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC19	NM_012337	exon10	c.G1232A	p.R411Q	.	.	1191	239	851	1	.	91
CCDC88A	55704	bcgsc.ca	37	2	55546115	55546115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC88A	NM_018084	exon19	c.A3188G	p.Q1063R	.	.	165	5	220	0	.	94
CCDC9	26093	hgsc.bcm.edu	37	19	47764057	47764057	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC9	NM_015603	exon5	c.T423C	p.S141S	.	.	143	6	146	0	.	90
CCIN	881	hgsc.bcm.edu;bcgsc.ca	37	9	36170794	36170794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCIN	NM_005893	exon1	c.G1295T	p.R432L	.	.	92	5	86	0	.	92
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	91230222	91230222	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145065	exon2	c.T787C	p.L263L	.	.	31	4	46	0	.	.
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17072001	17072001	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCT8L2	NM_014406	exon1	c.G1440T	p.V480V	.	.	155	113	285	0	.	69
CD37	951	hgsc.bcm.edu	37	19	49842011	49842011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CD37	NM_001774	exon6	c.A502G	p.R168G	.	.	85	4	76	0	.	90
CDC27	996	bcgsc.ca	37	17	45234327	45234327	+	Missense_Mutation	SNP	C	C	T	rs7350889	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDC27	NM_001114091	exon7	c.G794A	p.G265D	.	.	135	12	120	1	C|1.000;|0.000	291
CDC27	996	bcgsc.ca	37	17	45234397	45234397	+	Missense_Mutation	SNP	G	G	A	rs7350908	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDC27	NM_001114091	exon7	c.C724T	p.P242S	.	.	107	14	103	1	G|1.000;|0.000	291
CDC42	998	hgsc.bcm.edu;bcgsc.ca	37	1	22417973	22417973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDC42	NM_001791	exon6	c.C539T	p.P180L	.	.	77	4	167	0	.	1084
CDH7	1005	bcgsc.ca	37	18	63430172	63430172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDH7	NM_004361	exon2	c.T94C	p.S32P	.	.	135	5	137	3	.	94
CDHR3	222256	hgsc.bcm.edu;bcgsc.ca	37	7	105621574	105621574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDHR3	NM_152750	exon3	c.C410A	p.A137E	.	.	83	4	128	0	.	23
CDK14	5218	hgsc.bcm.edu;bcgsc.ca	37	7	90747440	90747440	+	Missense_Mutation	SNP	G	G	T	rs74839397	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDK14	NM_012395	exon13	c.G1301T	p.R434L	.	.	93	4	115	0	G|0.999;A|0.001	970
CDKL5	6792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18606124	18606124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDKL5	NM_003159	exon9	c.G605T	p.G202V	.	.	503	267	666	3	.	838
CDRT15	146822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	14139241	14139241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDRT15	NM_001007530	exon3	c.T499C	p.W167R	.	.	357	81	311	0	.	90
CDS1	1040	hgsc.bcm.edu;bcgsc.ca	37	4	85562071	85562071	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDS1	NM_001263	exon10	c.A960G	p.E320E	.	.	98	4	167	0	.	155
CELSR2	1952	hgsc.bcm.edu;bcgsc.ca	37	1	109794818	109794818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CELSR2	NM_001408	exon1	c.A2117G	p.N706S	.	.	61	4	99	0	.	526
CENPE	1062	broad.mit.edu	37	4	104037825	104037825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CENPE	NM_001813	exon45	c.A7351G	p.K2451E	.	.	330	6	470	0	.	277
CEP192	55125	hgsc.bcm.edu;bcgsc.ca	37	18	13015339	13015339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP192	NM_032142	exon6	c.G532T	p.D178Y	.	.	89	4	89	0	.	27
CEP250	11190	hgsc.bcm.edu	37	20	34086433	34086433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP250	NM_007186	exon27	c.G3665T	p.G1222V	.	.	54	4	42	0	.	27
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34067549	34067549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP250	NM_007186	exon19	c.G2367T	p.Q789H	.	.	127	41	170	0	.	27
CEP350	9857	hgsc.bcm.edu;bcgsc.ca	37	1	180013222	180013222	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP350	NM_014810	exon21	c.A4536G	p.E1512E	.	.	96	5	70	0	.	26
CEP55	55165	hgsc.bcm.edu;bcgsc.ca	37	10	95275260	95275260	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP55	NM_001127182	exon5	c.G627T	p.T209T	.	.	148	6	111	0	.	90
CETP	1071	hgsc.bcm.edu	37	16	57007309	57007309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CETP	NM_000078	exon9	c.G817T	p.G273W	.	.	91	4	109	0	.	91
CFTR	1080	bcgsc.ca	37	7	117307076	117307076	+	Silent	SNP	C	C	A	rs4148725	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CFTR	NM_000492	exon27	c.C4357A	p.R1453R	.	.	143	5	227	0	C|0.996;T|0.004	518
CHADL	150356	hgsc.bcm.edu;bcgsc.ca	37	22	41634867	41634867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHADL	NM_138481	exon3	c.A209G	p.Q70R	.	.	56	4	89	0	.	68
CHD1L	9557	hgsc.bcm.edu	37	1	146724367	146724367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD1L	NM_004284	exon2	c.A217G	p.M73V	.	.	120	5	99	0	.	231
CHD2	1106	hgsc.bcm.edu	37	15	93498741	93498741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD2	NM_001271	exon15	c.A1808G	p.K603R	.	.	98	4	147	0	.	229
CHD7	55636	hgsc.bcm.edu	37	8	61765453	61765453	+	Missense_Mutation	SNP	C	C	A	rs192260844	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD7	NM_017780	exon31	c.C6169A	p.R2057S	.	.	72	4	57	0	C|0.999;T|0.000	141
CHD7	55636	hgsc.bcm.edu;bcgsc.ca	37	8	61757431	61757431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD7	NM_017780	exon22	c.G4859T	p.R1620L	.	.	110	5	70	0	.	141
CHD9	80205	bcgsc.ca	37	16	53288443	53288443	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD9	NM_025134	exon18	c.C3955A	p.R1319R	.	.	131	5	246	1	.	272
CHD9	80205	hgsc.bcm.edu	37	16	53358168	53358168	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD9	NM_025134	exon39	c.G8007A	p.L2669L	.	.	96	5	124	0	.	272
CHIA	27159	hgsc.bcm.edu	37	1	111857937	111857937	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHIA	NM_201653	exon6	c.C360A	p.I120I	.	.	96	4	138	0	.	91
CHIC1	53344	bcgsc.ca	37	X	72804404	72804404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHIC1	NM_001039840	exon3	c.A503G	p.K168R	.	.	150	5	168	0	.	130
CHSY1	22856	hgsc.bcm.edu;bcgsc.ca	37	15	101718547	101718547	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHSY1	NM_014918	exon3	c.T1455C	p.H485H	.	.	81	4	93	0	.	90
CIRBP	1153	bcgsc.ca	37	19	1271184	1271184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CIRBP	NM_001280	exon3	c.G149T	p.G50V	.	.	295	9	282	0	.	226
CIZ1	25792	hgsc.bcm.edu	37	9	130947925	130947925	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CIZ1	NM_001257975	exon5	c.T579C	p.P193P	.	.	119	5	125	0	.	92
CKAP5	9793	bcgsc.ca	37	11	46785126	46785126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CKAP5	NM_001008938	exon29	c.A3592G	p.T1198A	.	.	226	6	212	2	.	92
CLASP1	23332	bcgsc.ca	37	2	122144797	122144797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLASP1	NM_015282	exon31	c.C3275A	p.P1092Q	.	.	173	6	158	1	.	91
CLCA2	9635	hgsc.bcm.edu;bcgsc.ca	37	1	86900325	86900325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLCA2	NM_006536	exon6	c.C869T	p.P290L	.	.	89	4	131	0	.	155
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143016896	143016896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLCN1	NM_000083	exon2	c.G229A	p.G77R	.	.	88	39	91	0	.	156
CLSPN	63967	broad.mit.edu	37	1	36215325	36215325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLSPN	NM_022111	exon11	c.A2116G	p.I706V	.	.	257	5	379	0	.	293
CLTCL1	8218	hgsc.bcm.edu	37	22	19222036	19222036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLTCL1	NM_001835	exon7	c.C1163A	p.P388Q	.	.	83	4	138	0	.	230
CMTM7	112616	bcgsc.ca	37	3	32490967	32490967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CMTM7	NM_138410	exon3	c.G355T	p.G119C	.	.	319	8	360	3	.	226
COG4	25839	hgsc.bcm.edu	37	16	70546324	70546324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COG4	NM_015386	exon5	c.G556A	p.D186N	.	.	57	4	83	0	.	90
COL17A1	1308	bcgsc.ca	37	10	105809177	105809177	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL17A1	NM_000494	exon29	c.A2217G	p.K739K	.	.	191	6	119	0	.	95
COL1A2	1278	hgsc.bcm.edu	37	7	94043018	94043018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL1A2	NM_000089	exon27	c.A1574G	p.D525G	.	.	59	4	119	0	.	521
COL4A4	1286	hgsc.bcm.edu;bcgsc.ca	37	2	227895215	227895215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL4A4	NM_000092	exon41	c.C3917T	p.P1306L	.	.	72	4	77	0	.	142
COL5A1	1289	bcgsc.ca	37	9	137658300	137658300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL5A1	NM_000093	exon22	c.G2089T	p.G697C	.	.	153	5	162	0	.	524
COL5A3	50509	hgsc.bcm.edu;bcgsc.ca	37	19	10106242	10106242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL5A3	NM_015719	exon16	c.A1585G	p.M529V	.	.	80	4	55	0	.	99
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	3	48625362	48625362	+	Silent	SNP	T	T	C	rs201566458		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL7A1	NM_000094	exon21	c.A2721G	p.E907E	.	.	69	4	60	0	.	160
COMMD6	170622	hgsc.bcm.edu	37	13	76104273	76104273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COMMD6	NM_203495	exon3	c.G184A	p.E62K	.	.	79	5	81	0	.	90
COMTD1	118881	hgsc.bcm.edu	37	10	76995129	76995129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COMTD1	NM_144589	exon3	c.T224C	p.L75P	.	.	38	4	28	0	.	90
COQ10B	80219	bcgsc.ca	37	2	198338554	198338554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COQ10B	NM_025147	exon5	c.T623C	p.M208T	.	.	166	5	161	0	.	90
CORO1A	11151	hgsc.bcm.edu	37	16	30196584	30196584	+	Silent	SNP	G	G	T	rs61736363	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CORO1A	NM_001193333	exon3	c.G54T	p.P18P	.	.	93	4	127	0	G|0.986;C|0.014	226
CORO1B	57175	hgsc.bcm.edu	37	11	67210003	67210003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CORO1B,NS,carcinoma,0	CORO1B	NM_020441	exon2	c.C97A	p.R33S	.	.	149	6	123	1	.	108
COX5A	9377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75221502	75221502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COX5A	NM_004255	exon2	c.A172G	p.T58A	.	.	121	39	183	0	.	90
CPE	1363	bcgsc.ca	37	4	166414405	166414405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CPE	NM_001873	exon7	c.A1196G	p.D399G	.	.	98	5	192	2	.	155
CPEB2	132864	hgsc.bcm.edu	37	4	15005655	15005655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CPEB2	NM_001177381	exon1	c.T1358C	p.L453P	.	.	79	5	119	0	.	91
CPS1	1373	hgsc.bcm.edu	37	2	211455601	211455601	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CPS1	NM_001122633	exon10	c.C936T	p.A312A	.	.	70	4	53	0	.	162
CPT1B	1375	hgsc.bcm.edu	37	22	51008052	51008052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CPT1B	NM_001145135	exon18	c.A2188G	p.N730D	.	.	97	4	138	0	.	116
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207890960	207890960	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CR1L	NM_175710	exon11	c.C1566T	p.I522I	.	.	546	77	361	0	.	46
CRB1	23418	hgsc.bcm.edu	37	1	197391072	197391072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRB1	NM_001257966	exon6	c.C2114A	p.P705H	.	.	92	4	67	0	.	161
CRB2	286204	hgsc.bcm.edu;bcgsc.ca	37	9	126133645	126133645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRB2	NM_173689	exon8	c.G2224T	p.G742W	.	.	143	6	124	0	.	91
CRHR2	1395	hgsc.bcm.edu	37	7	30728894	30728894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRHR2	NM_001202475	exon2	c.G97T	p.G33W	.	.	95	4	148	0	.	524
CRLF3	51379	bcgsc.ca	37	17	29111435	29111435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRLF3	NM_015986	exon8	c.A1099G	p.M367V	.	.	163	6	137	0	.	90
CRNKL1	51340	broad.mit.edu	37	20	20024142	20024142	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRNKL1	NM_016652	exon8	c.A1449G	p.E483E	.	.	649	10	593	2	.	137
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2949044	2949044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSMD1	NM_033225	exon48	c.T7279C	p.Y2427H	.	.	76	4	92	0	.	86
CSPG4	1464	hgsc.bcm.edu;bcgsc.ca	37	15	75982391	75982391	+	Missense_Mutation	SNP	G	G	T	rs200187536	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSPG4	NM_001897	exon3	c.C1015A	p.R339S	.	.	62	4	63	0	G|0.999;A|0.001	229
CSPG5	10675	hgsc.bcm.edu	37	3	47618664	47618664	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSPG5	NM_006574	exon2	c.T852C	p.D284D	.	.	82	4	84	0	.	91
CSRP2	1466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	77253334	77253334	+	Silent	SNP	A	A	G	rs202057442		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSRP2	NM_001321	exon5	c.T498C	p.Y166Y	.	.	332	161	333	1	A|0.999;G|0.001	91
CTDP1	9150	hgsc.bcm.edu	37	18	77488935	77488935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CTDP1	NM_004715	exon11	c.T2446C	p.F816L	.	.	73	4	63	0	.	90
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CTGF	NM_001901	exon2	c.A219C	p.P73P	.	.	5	5	0	0	T|0.000;G|1.000	90
CTNNA2	1496	hgsc.bcm.edu	37	2	80085187	80085187	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CTNNA2	NM_001164883	exon4	c.C347A	p.S116X	.	.	96	4	102	0	.	368
CTNNA2	1496	hgsc.bcm.edu	37	2	80085274	80085274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CTNNA2	NM_001164883	exon4	c.A434G	p.D145G	.	.	72	4	88	0	.	368
CTNND2	1501	bcgsc.ca	37	5	11346514	11346514	+	Missense_Mutation	SNP	G	G	T	rs201675268	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CTNND2	NM_001332	exon9	c.C1598A	p.P533Q	.	.	164	5	158	0	G|1.000;A|0.000	293
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17142090	17142090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CUBN	NM_001081	exon14	c.G1679C	p.S560T	.	.	264	116	205	0	.	166
CUL7	9820	hgsc.bcm.edu	37	6	43010877	43010877	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CUL7	NM_001168370	exon18	c.C3649A	p.R1217R	.	.	59	4	47	0	.	229
CXADR	1525	hgsc.bcm.edu;bcgsc.ca	37	21	18919456	18919456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CXADR	NM_001207065	exon2	c.C155A	p.P52Q	.	.	57	4	67	0	.	227
CXorf22	170063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	35971756	35971756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CXorf22	NM_152632	exon7	c.A1094G	p.D365G	.	.	362	122	433	2	.	131
CYP17A1	1586	hgsc.bcm.edu	37	10	104590471	104590471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP17A1	NM_000102	exon8	c.G1515T	p.E505D	.	.	92	4	73	0	.	90
CYP19A1	1588	hgsc.bcm.edu	37	15	51504537	51504537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP19A1	NM_031226	exon10	c.C1243A	p.L415I	.	.	107	6	194	0	.	93
CYP2B6	1555	hgsc.bcm.edu	37	19	41518302	41518302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP2B6	NM_000767	exon7	c.A1064G	p.E355G	.	.	97	4	93	0	.	92
CYP4A11	1579	hgsc.bcm.edu;bcgsc.ca	37	1	47406949	47406949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP4A11	NM_000778	exon1	c.T157C	p.C53R	.	.	71	4	159	0	.	94
DACH2	117154	hgsc.bcm.edu;bcgsc.ca	37	X	85404070	85404070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DACH2	NM_001139514	exon1	c.G446T	p.R149M	.	.	59	4	61	0	.	136
DACT1	51339	hgsc.bcm.edu	37	14	59112097	59112097	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DACT1	NM_016651	exon4	c.C756A	p.P252P	.	.	106	5	151	0	.	291
DALRD3	55152	hgsc.bcm.edu	37	3	49053675	49053675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DALRD3	NM_001009996	exon9	c.G1245T	p.E415D	.	.	82	4	78	0	.	90
DALRD3	55152	hgsc.bcm.edu;bcgsc.ca	37	3	49053492	49053492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DALRD3	NM_001009996	exon10	c.A1357G	p.I453V	.	.	88	4	93	0	.	90
DAPP1	27071	hgsc.bcm.edu;bcgsc.ca	37	4	100756811	100756811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DAPP1	NM_014395	exon2	c.G133T	p.A45S	.	.	100	5	124	0	.	93
DBT	1629	bcgsc.ca	37	1	100672189	100672189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DBT	NM_001918	exon9	c.T1021C	p.S341P	.	.	51	4	77	0	.	91
DCAF7	10238	hgsc.bcm.edu;bcgsc.ca	37	17	61666468	61666468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DCAF7	NM_005828	exon8	c.G963T	p.W321C	.	.	124	5	107	0	.	91
DCDC5	100506627	hgsc.bcm.edu;bcgsc.ca	37	11	30938424	30938424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DCDC5	NM_020869	exon7	c.A766G	p.K256E	.	.	146	6	152	0	.	23
DCUN1D4	23142	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	52740446	52740446	+	Missense_Mutation	SNP	G	G	T	rs142966675		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	DCUN1D4,NS,carcinoma,0	DCUN1D4	NM_015115	exon4	c.G146T	p.R49L	.	.	32	4	39	0	G|1.000;T|0.000	92
DDB1	1642	bcgsc.ca	37	11	61083760	61083760	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DDB1	NM_001923	exon12	c.C1407A	p.I469I	.	.	55	4	66	0	.	661
DDX51	317781	hgsc.bcm.edu	37	12	132626881	132626881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DDX51	NM_175066	exon4	c.T757C	p.C253R	.	.	49	4	33	0	.	227
DECR2	26063	hgsc.bcm.edu	37	16	461574	461574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DECR2	NM_020664	exon8	c.T875C	p.L292P	.	.	98	4	158	0	.	90
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90023996	90023996	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEF8	NM_207514	exon5	c.C483A	p.P161P	.	.	273	232	421	0	.	68
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153906108	153906108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DENND4B	NM_014856	exon20	c.C3181T	p.L1061F	.	.	379	219	220	0	.	69
DEPDC5	9681	hgsc.bcm.edu;bcgsc.ca	37	22	32217607	32217607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEPDC5	NM_001136029	exon22	c.C1990T	p.H664Y	.	.	74	4	88	0	.	519
DEPTOR	64798	hgsc.bcm.edu;bcgsc.ca	37	8	120977517	120977517	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEPTOR	NM_022783	exon4	c.A471G	p.E157E	.	.	86	4	72	0	.	227
DGKQ	1609	bcgsc.ca	37	4	955829	955829	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DGKQ	NM_001347	exon19	c.G2256A	p.A752A	.	.	50	4	76	1	.	537
DHX58	79132	hgsc.bcm.edu	37	17	40255722	40255722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DHX58	NM_024119	exon12	c.A1658G	p.Q553R	.	.	81	4	54	0	.	90
DHX9	1660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182847265	182847265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DHX9	NM_001357	exon20	c.C2308G	p.P770A	.	.	256	27	174	1	.	92
DLEC1	9940	hgsc.bcm.edu	37	3	38150965	38150965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLEC1	NM_007337	exon22	c.A3172G	p.M1058V	.	.	91	4	95	0	.	161
DLG2	1740	bcgsc.ca	37	11	84865608	84865608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLG2	NM_001142699	exon5	c.A274G	p.T92A	.	.	149	5	146	0	.	96
DLG4	1742	hgsc.bcm.edu;bcgsc.ca	37	17	7097797	7097797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLG4	NM_001365	exon14	c.A1448G	p.D483G	.	.	56	4	56	0	.	24
DLG5	9231	hgsc.bcm.edu	37	10	79614037	79614037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLG5	NM_004747	exon4	c.A628G	p.T210A	.	.	98	4	71	0	.	98
DLGAP4	22839	bcgsc.ca	37	20	35128079	35128079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLGAP4	NM_183006	exon3	c.G482T	p.R161L	.	.	271	11	226	3	.	94
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	32715997	32715997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DMD	NM_004006	exon9	c.T950A	p.F317Y	.	.	177	88	232	2	.	265
DNAH17	8632	hgsc.bcm.edu	37	17	76456313	76456313	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH17	NM_173628	exon59	c.T9366C	p.C3122C	.	.	116	5	96	0	.	142
DNAH2	146754	broad.mit.edu	37	17	7626975	7626975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH2	NM_020877	exon2	c.A196G	p.S66G	.	.	329	7	321	3	.	102
DNAH3	55567	bcgsc.ca	37	16	20976606	20976606	+	Missense_Mutation	SNP	G	G	T	rs147804108	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH3	NM_017539	exon53	c.C8600A	p.P2867Q	.	.	134	5	180	2	G|0.999;A|0.001	167
DNAH5	1767	broad.mit.edu	37	5	13769148	13769148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH5	NM_001369	exon58	c.T9818C	p.I3273T	.	.	286	7	250	1	.	182
DNAH6	1768	bcgsc.ca	37	2	84822832	84822832	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH6	NM_001370	exon18	c.T2787C	p.F929F	.	.	101	4	102	0	.	69
DNAH9	1770	hgsc.bcm.edu;bcgsc.ca	37	17	11661007	11661007	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH9	NM_001372	exon35	c.C6993T	p.T2331T	.	.	143	6	148	0	.	168
DNAI1	27019	hgsc.bcm.edu	37	9	34506838	34506838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAI1	NM_012144	exon13	c.C1277T	p.A426V	.	.	95	4	73	0	.	90
DNAI2	64446	bcgsc.ca	37	17	72278031	72278031	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAI2	NM_001172810	exon2	c.C75A	p.A25A	.	.	188	6	169	0	.	92
DNAJB5	25822	hgsc.bcm.edu;bcgsc.ca	37	9	34990809	34990809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJB5	NM_001135004	exon2	c.G308T	p.R103L	.	.	59	4	69	0	.	226
DNAJC5B	85479	bcgsc.ca	37	8	66988991	66988991	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJC5B	NM_033105	exon4	c.C216A	p.T72T	.	.	274	7	261	1	.	226
DNAJC8	22826	hgsc.bcm.edu;bcgsc.ca	37	1	28536549	28536549	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJC8	NM_014280	exon5	c.G333A	p.L111L	.	.	74	4	132	0	.	90
DNASE1	1773	hgsc.bcm.edu	37	16	3705477	3705477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNASE1	NM_005223	exon2	c.G103A	p.E35K	.	.	82	4	139	0	.	90
DNHD1	144132	hgsc.bcm.edu	37	11	6591490	6591490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNHD1	NM_144666	exon41	c.C12969A	p.Y4323X	.	.	97	4	96	0	.	24
DNTTIP2	30836	bcgsc.ca	37	1	94342223	94342223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_014597	exon2	c.A1268G	p.D423G	.	.	318	7	469	0	.	.
DOCK10	55619	hgsc.bcm.edu	37	2	225652004	225652004	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK10	NM_014689	exon49	c.A5529G	p.Q1843Q	.	.	99	4	112	0	.	92
DOCK11	139818	hgsc.bcm.edu	37	X	117744275	117744275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK11	NM_144658	exon28	c.T2990C	p.V997A	.	.	99	4	88	0	.	93
DOCK3	1795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51297588	51297588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK3	NM_004947	exon23	c.C2186A	p.A729D	.	.	182	8	193	0	.	22
DOCK7	85440	bcgsc.ca	37	1	62979276	62979276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK7	NM_001271999	exon33	c.G4121A	p.G1374E	.	.	138	5	191	0	.	92
DOCK8	81704	hgsc.bcm.edu	37	9	304685	304685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK8	NM_203447	exon5	c.G509A	p.C170Y	.	.	81	4	62	0	.	517
DPH1	1801	hgsc.bcm.edu	37	17	1943643	1943643	+	Missense_Mutation	SNP	G	G	A	rs201983229		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DPH1	NM_001383	exon8	c.G896A	p.R299H	.	.	86	4	76	0	.	181
DSPP	1834	bcgsc.ca	37	4	88537285	88537285	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DSPP	NM_014208	exon5	c.C3471T	p.S1157S	.	.	276	19	289	4	.	90
DST	667	hgsc.bcm.edu	37	6	56346864	56346864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DST	NM_015548	exon71	c.T13646C	p.L4549P	.	.	71	4	30	0	.	523
DST	667	hgsc.bcm.edu	37	6	56358808	56358808	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DST	NM_015548	exon64	c.A12525G	p.K4175K	.	.	138	6	121	0	.	523
DST	667	hgsc.bcm.edu	37	6	56436957	56436957	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DST	NM_015548	exon34	c.T5793C	p.L1931L	.	.	54	4	40	0	.	523
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103152947	103152947	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DYNC2H1	NM_001080463	exon73	c.T10822C	p.L3608L	.	.	76	4	106	0	.	68
DZIP1	22873	hgsc.bcm.edu	37	13	96293971	96293971	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DZIP1	NM_014934	exon5	c.C175T	p.Q59X	.	.	18	4	13	0	.	92
ECT2L	345930	hgsc.bcm.edu	37	6	139135640	139135640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ECT2L	NM_001195037	exon3	c.A79G	p.R27G	.	.	65	4	66	0	.	22
EDEM2	55741	bcgsc.ca	37	20	33725709	33725709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EDEM2	NM_018217	exon5	c.A464G	p.E155G	.	.	73	4	80	3	.	90
EFCAB14	9813	hgsc.bcm.edu;bcgsc.ca	37	1	47149060	47149060	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_014774	exon10	c.G1224A	p.L408L	.	.	59	4	106	0	.	.
EFHA1	221154	bcgsc.ca	37	13	22077193	22077193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EFHA1	NM_152726	exon9	c.C805A	p.L269I	.	.	131	5	152	0	.	90
EGFR	1956	hgsc.bcm.edu;bcgsc.ca	37	7	55224338	55224338	+	Silent	SNP	G	G	T	rs2302536	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EGFR	NM_201283	exon9	c.G1119T	p.P373P	.	.	120	5	162	0	G|0.997;A|0.003	44910
EHF	26298	hgsc.bcm.edu	37	11	34673334	34673334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EHF	NM_001206616	exon6	c.A592G	p.T198A	.	.	57	4	85	0	.	226
EIF2B1	1967	hgsc.bcm.edu	37	12	124111608	124111608	+	Silent	SNP	T	T	C	rs199625718		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EIF2B1	NM_001414	exon5	c.A465G	p.S155S	.	.	90	4	87	0	T|0.999;C|0.000	90
EIF2D	1939	broad.mit.edu	37	1	206765179	206765179	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EIF2D	NM_001201478	exon14	c.1313-2A>G	.	.	.	573	8	434	0	.	92
EIF3A	8661	bcgsc.ca	37	10	120796778	120796778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EIF3A	NM_003750	exon21	c.A3772G	p.S1258G	.	.	130	5	80	0	.	226
ELAC2	60528	hgsc.bcm.edu	37	17	12899257	12899257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ELAC2	NM_018127	exon18	c.G1698T	p.L566F	.	.	80	4	74	0	.	90
ELF2	1998	hgsc.bcm.edu	37	4	139981781	139981781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ELF2	NM_006874	exon6	c.A674C	p.H225P	.	.	96	4	154	0	.	228
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	79404924	79404924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ELTD1	NM_022159	exon4	c.C345A	p.C115X	.	.	278	219	450	1	.	24
EML3	256364	hgsc.bcm.edu	37	11	62375157	62375157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EML3	NM_153265	exon11	c.G1343T	p.R448L	.	.	90	4	102	0	.	91
EML3	256364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62370651	62370651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EML3	NM_153265	exon20	c.T2326C	p.Y776H	.	.	62	4	51	0	.	91
EML6	400954	hgsc.bcm.edu	37	2	55194149	55194149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001039753	exon38	c.C5507T	p.A1836V	.	.	89	4	113	0	.	.
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14765979	14765979	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EMR3	NM_032571	exon7	c.394-2A>T	.	.	.	309	135	259	1	.	528
ENGASE	64772	hgsc.bcm.edu;bcgsc.ca	37	17	77073755	77073755	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ENGASE	NM_001042573	exon3	c.T225C	p.Y75Y	.	.	78	4	61	0	.	91
EP300	2033	hgsc.bcm.edu	37	22	41572904	41572904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EP300	NM_001429	exon31	c.C5189A	p.S1730Y	.	.	92	4	95	0	.	2011
EPHA3	2042	bcgsc.ca	37	3	89480397	89480397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EPHA3	NM_005233	exon13	c.G2234T	p.R745L	.	.	216	7	211	1	.	1500
EPHB1	2047	bcgsc.ca	37	3	134968313	134968313	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EPHB1	NM_004441	exon15	c.G2826T	p.L942L	.	.	78	4	80	0	.	1492
EPRS	2058	hgsc.bcm.edu	37	1	220170686	220170686	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EPRS	NM_004446	exon19	c.2182-2A>G	.	.	.	49	4	42	0	.	92
ERAP2	64167	bcgsc.ca	37	5	96239264	96239264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERAP2	NM_001130140	exon13	c.G2012T	p.G671V	.	.	144	5	98	0	.	68
ERC2	26059	hgsc.bcm.edu;bcgsc.ca	37	3	56207475	56207475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERC2	NM_015576	exon4	c.A1148G	p.K383R	.	.	93	4	89	0	.	24
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128051105	128051105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERCC3	NM_000122	exon2	c.C218T	p.S73F	.	.	172	54	174	0	.	723
ESRP2	80004	hgsc.bcm.edu	37	16	68265144	68265144	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ESRP2	NM_024939	exon12	c.C1648A	p.R550R	.	.	98	4	110	0	.	91
ESYT1	23344	hgsc.bcm.edu;bcgsc.ca	37	12	56530663	56530663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ESYT1	NM_001184796	exon16	c.A1798G	p.K600E	.	.	77	4	88	0	.	95
EWSR1	2130	hgsc.bcm.edu	37	22	29692342	29692342	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EWSR1	NM_013986	exon13	c.C1293A	p.A431A	.	.	82	4	102	0	.	3375
EXOC7	23265	bcgsc.ca	37	17	74084912	74084912	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EXOC7	NM_001145297	exon10	c.C1293A	p.T431T	.	.	128	5	124	1	.	90
EXOSC8	11340	bcgsc.ca	37	13	37583329	37583329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EXOSC8	NM_181503	exon11	c.G724T	p.G242W	.	.	195	6	194	0	.	91
F5	2153	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169515769	169515769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	F5	NM_000130	exon11	c.A1673G	p.Y558C	.	.	239	22	153	1	.	157
FAM111B	374393	hgsc.bcm.edu;bcgsc.ca	37	11	58877115	58877115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM111B	NM_198947	exon3	c.C17A	p.T6N	.	.	64	4	61	0	.	92
FAM162A	26355	bcgsc.ca	37	3	122128604	122128604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM162A	NM_014367	exon5	c.A391G	p.T131A	.	.	182	6	233	0	.	159
FAM188A	80013	hgsc.bcm.edu;bcgsc.ca	37	10	15883432	15883432	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM188A	NM_024948	exon4	c.A402G	p.E134E	.	.	89	6	71	0	.	228
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56658883	56658883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001112736	exon22	c.C4291G	p.Q1431E	.	.	326	167	360	1	.	.
FAM217A	222826	hgsc.bcm.edu;bcgsc.ca	37	6	4070154	4070154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_173563	exon7	c.G303T	p.R101S	.	.	100	4	68	0	.	.
FAM69C	125704	hgsc.bcm.edu	37	18	72114420	72114420	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM69C	NM_001044369	exon2	c.A297G	p.R99R	.	.	55	4	50	0	.	68
FAM71E1	112703	hgsc.bcm.edu;bcgsc.ca	37	19	50971076	50971076	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM71E1	NM_138411	exon4	c.T502C	p.L168L	.	.	77	4	61	0	.	44
FAM83G	644815	hgsc.bcm.edu	37	17	18881095	18881095	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM83G	NM_001039999	exon5	c.T1884C	p.P628P	.	.	86	4	65	0	.	69
FAM98C	147965	hgsc.bcm.edu	37	19	38897603	38897603	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM98C	NM_174905	exon7	c.C804A	p.T268T	.	.	96	5	80	0	.	91
FANCF	2188	hgsc.bcm.edu	37	11	22646564	22646564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FANCF	NM_022725	exon1	c.A793G	p.S265G	.	.	79	4	102	0	.	1083
FANCM	57697	bcgsc.ca	37	14	45636268	45636268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FANCM	NM_020937	exon11	c.C1904T	p.P635L	.	.	161	5	217	0	.	569
FARP2	9855	hgsc.bcm.edu;bcgsc.ca	37	2	242432429	242432429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FARP2	NM_014808	exon25	c.T2873C	p.L958S	.	.	98	4	81	0	.	93
FASN	2194	hgsc.bcm.edu	37	17	80038328	80038328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FASN	NM_004104	exon40	c.A6965G	p.Q2322R	.	.	110	5	74	0	.	90
FAT3	120114	hgsc.bcm.edu;bcgsc.ca	37	11	92087868	92087868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAT3	NM_001008781	exon1	c.G2590T	p.G864C	.	.	98	4	73	0	.	73
FBF1	85302	hgsc.bcm.edu;bcgsc.ca	37	17	73916127	73916127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBF1	NM_001080542	exon18	c.A1847G	p.Q616R	.	.	115	5	96	0	.	205
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45943008	45943008	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBLN1	NM_006487	exon12	c.C1365T	p.A455A	.	.	45	33	80	0	.	515
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127704892	127704892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBN2	NM_001999	exon16	c.G2231A	p.C744Y	.	.	38	15	42	0	.	146
FBP1	2203	bcgsc.ca	37	9	97382623	97382623	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBP1	NM_000507	exon2	c.A321G	p.E107E	.	.	158	5	184	0	.	226
FBXO11	80204	bcgsc.ca	37	2	48036787	48036787	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBXO11	NM_001190274	exon20	c.C2398A	p.R800R	.	.	158	6	183	1	.	659
FBXW5	54461	hgsc.bcm.edu	37	9	139836076	139836076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBXW5	NM_018998	exon7	c.G1157T	p.R386L	.	.	124	5	97	0	.	226
FCGBP	8857	hgsc.bcm.edu;bcgsc.ca	37	19	40440523	40440523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FCGBP	NM_003890	exon1	c.G3T	p.M1I	.	.	57	4	51	0	.	98
FCHO1	23149	hgsc.bcm.edu	37	19	17892040	17892040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FCHO1	NM_001161358	exon20	c.A1628G	p.D543G	.	.	74	4	49	0	.	90
FER1L6	654463	hgsc.bcm.edu	37	8	124989814	124989814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FER1L6	NM_001039112	exon10	c.T1028C	p.L343P	.	.	124	5	143	0	.	100
FETUB	26998	hgsc.bcm.edu;bcgsc.ca	37	3	186358341	186358341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FETUB	NM_014375	exon1	c.T92C	p.L31P	.	.	129	6	174	0	.	92
FLG2	388698	bcgsc.ca	37	1	152329943	152329943	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FLG2	NM_001014342	exon3	c.C319A	p.R107R	.	.	935	16	699	1	.	151
FLNC	2318	hgsc.bcm.edu	37	7	128477572	128477572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FLNC	NM_001127487	exon4	c.A820G	p.N274D	.	.	69	4	121	0	.	141
FMN2	56776	hgsc.bcm.edu	37	1	240371184	240371184	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FMN2	NM_020066	exon5	c.T3072A	p.P1024P	.	.	226	16	173	0	.	145
FMO4	2329	bcgsc.ca	37	1	171310833	171310833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FMO4	NM_002022	exon10	c.T1532C	p.M511T	.	.	198	6	154	2	.	537
FNDC3A	22862	hgsc.bcm.edu	37	13	49781309	49781309	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FNDC3A	NM_001079673	exon26	c.A3375G	p.Q1125Q	.	.	85	4	77	0	.	278
FOXR2	139628	bcgsc.ca	37	X	55650695	55650695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FOXR2	NM_198451	exon1	c.A551G	p.N184S	.	.	124	5	122	0	.	227
FRAS1	80144	hgsc.bcm.edu	37	4	79284759	79284759	+	Missense_Mutation	SNP	G	G	T	rs199918192	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRAS1	NM_001166133	exon21	c.G2515T	p.G839W	.	.	77	4	134	0	.	68
FRAS1	80144	hgsc.bcm.edu;bcgsc.ca	37	4	79455681	79455681	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRAS1	NM_025074	exon71	c.C11004A	p.L3668L	.	.	79	4	139	0	.	68
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRG1B	.	.	.	.	.	.	891	34	934	22	.	22
FRMD4A	55691	bcgsc.ca	37	10	13789813	13789813	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRMD4A	NM_018027	exon9	c.A471G	p.E157E	.	.	57	4	39	0	.	229
FRMPD4	9758	bcgsc.ca	37	X	12701706	12701706	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	FRMPD4,brain,glioma,0	FRMPD4	NM_014728	exon6	c.G573T	p.S191S	.	.	218	6	307	1	.	263
FRY	10129	hgsc.bcm.edu	37	13	32776658	32776658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRY	NM_023037	exon31	c.T4012C	p.F1338L	.	.	84	5	72	0	.	142
FURIN	5045	hgsc.bcm.edu	37	15	91423173	91423173	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FURIN	NM_002569	exon12	c.C1335A	p.A445A	.	.	68	4	117	0	.	1083
FXYD6-FXYD2	100533181	hgsc.bcm.edu;bcgsc.ca	37	11	117712509	117712509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001243598	exon4	c.C169A	p.L57I	.	.	87	5	112	0	.	.
FYN	2534	hgsc.bcm.edu;bcgsc.ca	37	6	112021440	112021440	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	FYN,NS,carcinoma,-2	FYN	NM_002037	exon9	c.A729G	p.V243V	.	.	78	4	112	0	.	1000
G3BP2	9908	bcgsc.ca	37	4	76579177	76579177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	G3BP2	NM_012297	exon8	c.C815A	p.P272Q	.	.	99	4	164	1	.	153
GABPB2	126626	bcgsc.ca	37	1	151079685	151079685	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GABPB2	NM_144618	exon7	c.A909G	p.Q303Q	.	.	105	4	69	1	.	90
GABRA5	2558	bcgsc.ca	37	15	27126023	27126023	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GABRA5	NM_001165037	exon4	c.A117G	p.K39K	.	.	193	6	255	0	.	91
GABRB3	2562	bcgsc.ca	37	15	26812845	26812845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GABRB3	NM_021912	exon7	c.A718G	p.K240E	.	.	75	4	91	0	.	518
GABRR1	2569	bcgsc.ca	37	6	89891765	89891765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GABRR1	NM_002042	exon8	c.C808A	p.R270S	.	.	156	5	187	0	.	91
GALNS	2588	bcgsc.ca	37	16	88880918	88880918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GALNS	NM_000512	exon14	c.G1498T	p.G500C	.	.	144	5	226	0	.	153
GALNT13	114805	hgsc.bcm.edu;bcgsc.ca	37	2	155295139	155295139	+	Silent	SNP	C	C	A	rs182009673	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GALNT13	NM_052917	exon12	c.C1431A	p.T477T	.	.	117	5	141	0	C|0.999;T|0.001	95
GANAB	23193	bcgsc.ca	37	11	62400736	62400736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GANAB	NM_198335	exon8	c.A704G	p.E235G	.	.	325	8	360	0	.	94
GAPDHS	26330	hgsc.bcm.edu	37	19	36033226	36033226	+	Missense_Mutation	SNP	A	A	G	rs148474705	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GAPDHS	NM_014364	exon5	c.A455G	p.E152G	.	.	121	5	82	0	A|0.999;C|0.001	226
GAPDHS	26330	hgsc.bcm.edu	37	19	36033313	36033313	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GAPDHS	NM_014364	exon5	c.540+2T>C	.	.	.	84	4	70	0	.	226
GARNL3	84253	bcgsc.ca	37	9	130119532	130119532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GARNL3	NM_032293	exon21	c.C1970A	p.T657N	.	.	171	6	165	0	.	516
GAS2L2	246176	hgsc.bcm.edu;bcgsc.ca	37	17	34074044	34074044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GAS2L2	NM_139285	exon5	c.C1076A	p.P359Q	.	.	80	5	86	0	.	227
GATAD2A	54815	bcgsc.ca	37	19	19576158	19576158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GATAD2A	NM_017660	exon2	c.A4G	p.T2A	.	.	206	6	189	1	.	90
GBP5	115362	hgsc.bcm.edu	37	1	89729496	89729496	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GBP5	NM_052942	exon9	c.G1285T	p.G429X	.	.	137	6	209	0	.	91
GBP6	163351	hgsc.bcm.edu;bcgsc.ca	37	1	89843997	89843997	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GBP6	NM_198460	exon5	c.A450G	p.E150E	.	.	64	4	95	0	.	92
GFM1	85476	hgsc.bcm.edu;bcgsc.ca	37	3	158364696	158364696	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GFM1	NM_024996	exon4	c.C532A	p.R178R	.	.	92	4	93	0	.	93
GFRA1	2674	hgsc.bcm.edu;bcgsc.ca	37	10	117853332	117853332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GFRA1	NM_005264	exon8	c.C896A	p.P299H	.	.	123	5	101	0	.	93
GGA3	23163	bcgsc.ca	37	17	73238436	73238436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GGA3	NM_138619	exon8	c.G728T	p.G243V	.	.	216	7	211	0	.	154
GIMAP8	155038	hgsc.bcm.edu	37	7	150171349	150171349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GIMAP8	NM_175571	exon4	c.A932G	p.N311S	.	.	94	4	85	0	.	95
GIT2	9815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110390999	110390999	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GIT2	NM_001135213	exon14	c.C1146T	p.H382H	.	.	467	195	448	0	.	226
GLE1	2733	hgsc.bcm.edu;bcgsc.ca	37	9	131277857	131277857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GLE1	NM_001499	exon3	c.G371T	p.R124L	.	.	51	4	93	0	.	22
GLI1	2735	hgsc.bcm.edu	37	12	57864991	57864991	+	Missense_Mutation	SNP	G	G	T	rs149553839	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GLI1	NM_005269	exon12	c.G2468T	p.G823V	.	.	84	4	69	0	G|0.999;A|0.001	722
GLRX2	51022	broad.mit.edu;bcgsc.ca	37	1	193070282	193070282	+	Missense_Mutation	SNP	T	T	C	rs113145293		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GLRX2	NM_016066	exon2	c.A175G	p.N59D	.	.	271	7	183	2	T|0.500;C|0.500	186
GLTSCR1	29998	hgsc.bcm.edu	37	19	48184474	48184474	+	Missense_Mutation	SNP	C	C	T	rs3745762		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GLTSCR1	NM_015711	exon6	c.C2047T	p.P683S	.	.	7	4	1	0	C|0.684;T|0.316	48
GLTSCR1L	23506	bcgsc.ca	37	6	42796910	42796910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_015349	exon5	c.T839C	p.V280A	.	.	189	7	178	0	.	.
GPIHBP1	338328	hgsc.bcm.edu;bcgsc.ca	37	8	144296897	144296897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPIHBP1	NM_178172	exon3	c.G191T	p.R64L	.	.	122	6	94	0	.	68
GPR107	57720	hgsc.bcm.edu	37	9	132897357	132897357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPR107	NM_001136557	exon20	c.A1760G	p.N587S	.	.	71	5	46	0	.	91
GPR155	151556	hgsc.bcm.edu	37	2	175324698	175324698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPR155	NM_001033045	exon11	c.A1679G	p.H560R	.	.	78	4	81	0	.	91
GPR50	9248	hgsc.bcm.edu	37	X	150345211	150345211	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPR50	NM_004224	exon1	c.G18T	p.A6A	.	.	98	4	104	0	.	176
GPR98	84059	broad.mit.edu	37	5	90281259	90281259	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPR98	NM_032119	exon85	c.G18072T	p.V6024V	.	.	769	10	550	1	.	103
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105781253	105781253	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIA4	NM_001077244	exon10	c.G1251T	p.V417V	.	.	158	49	209	0	.	230
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9857312	9857312	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon14	c.C4089A	p.S1363S	.	.	63	4	120	0	.	349
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9862782	9862782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon13	c.T2521C	p.F841L	.	.	54	4	77	0	.	349
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9943750	9943750	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon6	c.C1191A	p.S397S	.	.	62	4	120	0	.	349
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86415661	86415661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRM3	NM_000840	exon3	c.G553C	p.D185H	.	.	224	89	294	0	.	528
GRPEL2	134266	bcgsc.ca	37	5	148729226	148729226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRPEL2	NM_152407	exon3	c.C241A	p.Q81K	.	.	210	7	188	0	.	91
GSDMC	56169	bcgsc.ca	37	8	130764113	130764113	+	Missense_Mutation	SNP	G	G	T	rs201857986		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GSDMC	NM_031415	exon9	c.C911A	p.P304Q	.	.	161	6	127	0	.	93
GSE1	23199	hgsc.bcm.edu	37	16	85694992	85694992	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	KIAA0182,rectum,carcinoma,+2	.	NM_014615	exon9	c.G1881T	p.R627R	.	.	71	3	104	0	.	.
GSTM5	2949	bcgsc.ca	37	1	110260002	110260002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GSTM5	NM_000851	exon8	c.T611C	p.L204P	.	.	120	5	217	1	.	514
GSX2	170825	bcgsc.ca	37	4	54966852	54966852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GSX2	NM_133267	exon1	c.G341T	p.G114V	.	.	53	4	90	0	.	492
GTF3C1	2975	hgsc.bcm.edu	37	16	27506736	27506736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GTF3C1	NM_001520	exon15	c.C2428A	p.L810I	.	.	88	4	134	0	.	94
GTF3C2	2976	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	27550059	27550059	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GTF3C2	NM_001521	exon19	c.C2502T	p.N834N	.	.	44	4	64	0	.	92
GTSF1	121355	hgsc.bcm.edu	37	12	54858950	54858950	+	Silent	SNP	G	G	T	rs146835334	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GTSF1	NM_144594	exon3	c.C18A	p.T6T	.	.	87	4	82	0	G|1.000;A|0.000	90
GYG2	8908	hgsc.bcm.edu;bcgsc.ca	37	X	2774545	2774545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GYG2	NM_003918	exon7	c.A587G	p.D196G	.	.	80	4	108	0	.	132
HCFC2	29915	hgsc.bcm.edu	37	12	104495757	104495757	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HCFC2	NM_013320	exon14	c.A1890G	p.A630A	.	.	95	4	91	0	.	92
HCRTR1	3061	hgsc.bcm.edu;bcgsc.ca	37	1	32087137	32087137	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HCRTR1	NM_001525	exon6	c.C682T	p.L228L	.	.	75	4	115	0	.	523
HDX	139324	bcgsc.ca	37	X	83616593	83616593	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HDX	NM_144657	exon5	c.C1333A	p.R445R	.	.	245	7	265	0	.	132
HEATR4	399671	bcgsc.ca	37	14	73974847	73974847	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HEATR4	NM_203309	exon8	c.T1872C	p.S624S	.	.	75	4	95	0	.	91
HECTD4	283450	bcgsc.ca	37	12	112701921	112701921	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001109662	exon17	c.C2283T	p.D761D	.	.	157	5	169	0	.	.
HECTD4	283450	hgsc.bcm.edu	37	12	112622466	112622466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001109662	exon61	c.C9902T	p.P3301L	.	.	88	4	94	0	.	.
HEPHL1	341208	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93803697	93803697	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HEPHL1	NM_001098672	exon6	c.C1221T	p.N407N	.	.	133	40	149	0	.	71
HERC1	8925	hgsc.bcm.edu	37	15	63918224	63918224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HERC1	NM_003922	exon71	c.A13235T	p.Y4412F	.	.	60	4	97	0	.	666
HERC1	8925	hgsc.bcm.edu;bcgsc.ca	37	15	63916007	63916007	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HERC1	NM_003922	exon73	c.C13528A	p.R4510R	.	.	50	4	75	0	.	666
HERC3	8916	hgsc.bcm.edu	37	4	89591124	89591124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HERC3	NM_014606	exon15	c.T1747C	p.F583L	.	.	81	4	136	0	.	660
HEXB	3074	bcgsc.ca	37	5	74009453	74009453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HEXB	NM_000521	exon7	c.G894T	p.W298C	.	.	246	6	171	1	.	91
HGSNAT	138050	hgsc.bcm.edu	37	8	43054663	43054663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HGSNAT	NM_152419	exon18	c.T1859C	p.V620A	.	.	87	4	70	0	.	68
HID1	283987	hgsc.bcm.edu	37	17	72955014	72955014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_030630	exon9	c.T1141C	p.F381L	.	.	120	5	103	0	.	.
HIRIP3	8479	bcgsc.ca	37	16	30005363	30005363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HIRIP3	NM_003609	exon4	c.A1103G	p.E368G	.	.	128	5	224	3	.	90
HMGB4	127540	hgsc.bcm.edu	37	1	34330051	34330051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HMGB4	NM_145205	exon2	c.A259G	p.K87E	.	.	94	4	178	0	.	90
HNF1B	6928	hgsc.bcm.edu	37	17	36070598	36070598	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HNF1B	NM_000458	exon5	c.C1119A	p.A373A	.	.	96	4	102	0	.	71
HNF1B	6928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	36091619	36091619	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HNF1B	NM_000458	exon4	c.C1012T	p.Q338X	.	.	431	174	421	0	.	71
HNRNPA3P1	10151	bcgsc.ca	37	10	44285481	44285481	+	RNA	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	.	.	.	.	.	.	45	4	34	0	.	.
HOOK3	84376	bcgsc.ca	37	8	42812286	42812286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HOOK3	NM_032410	exon7	c.A518G	p.D173G	.	.	242	6	222	1	.	154
HOOK3	84376	hgsc.bcm.edu	37	8	42819578	42819578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HOOK3	NM_032410	exon9	c.T740C	p.L247P	.	.	91	4	86	0	.	154
HOXA11	3207	hgsc.bcm.edu;bcgsc.ca	37	7	27222608	27222608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HOXA11	NM_005523	exon2	c.A749G	p.K250R	.	.	72	4	102	0	.	1082
HPGD	3248	hgsc.bcm.edu;bcgsc.ca	37	4	175443106	175443106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HPGD	NM_000860	exon2	c.A206G	p.Q69R	.	.	57	4	85	0	.	90
HPS3	84343	hgsc.bcm.edu	37	3	148880655	148880655	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HPS3	NM_032383	exon13	c.C2471A	p.S824X	.	.	79	4	74	0	.	158
HSD17B1	3292	hgsc.bcm.edu;bcgsc.ca	37	17	40706435	40706435	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSD17B1	NM_000413	exon5	c.C552T	p.I184I	.	.	60	4	39	0	.	90
HSPA13	6782	bcgsc.ca	37	21	15750536	15750536	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSPA13	NM_006948	exon3	c.A564G	p.E188E	.	.	207	7	164	0	.	226
HSPA4	3308	bcgsc.ca	37	5	132409689	132409689	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSPA4	NM_002154	exon6	c.T534C	p.A178A	.	.	79	4	68	0	.	226
HSPG2	3339	hgsc.bcm.edu;bcgsc.ca	37	1	22180694	22180694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSPG2	NM_005529	exon50	c.A6431G	p.Y2144C	.	.	58	4	109	0	.	141
IFI27L1	122509	hgsc.bcm.edu;bcgsc.ca	37	14	94568841	94568841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFI27L1	NM_145249	exon5	c.T242C	p.V81A	.	.	83	4	136	0	.	90
IFNG	3458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	68551870	68551870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFNG	NM_000619	exon3	c.T189A	p.S63R	.	.	112	37	93	0	.	90
IFNLR1	163702	broad.mit.edu;bcgsc.ca	37	1	24485563	24485563	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_170743	exon6	c.G780A	p.R260R	.	.	272	8	439	1	.	.
IFT57	55081	bcgsc.ca	37	3	107937414	107937414	+	Silent	SNP	T	T	C	rs143516795	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFT57	NM_018010	exon3	c.A462G	p.E154E	.	.	189	6	190	1	T|1.000;G|0.000	227
IGSF10	285313	hgsc.bcm.edu	37	3	151174848	151174848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IGSF10	NM_178822	exon2	c.C290T	p.P97L	.	.	91	4	88	0	.	102
IL16	3603	hgsc.bcm.edu	37	15	81592606	81592606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IL16	NM_001172128	exon14	c.T2939C	p.L980P	.	.	98	4	133	0	.	653
IL16	3603	mdanderson.org	37	15	81591736	81591736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IL16	NM_001172128	exon14	c.C2069A	p.P690Q	.	.	8	2	18	0	.	653
IL23R	149233	bcgsc.ca	37	1	67648525	67648525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IL23R	NM_144701	exon4	c.C374T	p.P125L	.	.	81	4	113	1	.	90
IL31RA	133396	hgsc.bcm.edu	37	5	55164685	55164685	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IL31RA	NM_001242637	exon3	c.G221A	p.W74X	.	.	81	4	66	0	.	91
IL4R	3566	bcgsc.ca	37	16	27374016	27374016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IL4R	NM_000418	exon11	c.T1343C	p.F448S	.	.	49	4	65	0	.	227
ILF3	3609	hgsc.bcm.edu	37	19	10793837	10793837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ILF3	NM_017620	exon14	c.G1585T	p.G529C	.	.	99	4	84	0	.	93
INADL	10207	hgsc.bcm.edu	37	1	62626601	62626601	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	INADL	NM_176877	exon43	c.C5400A	p.A1800A	.	.	51	4	85	0	.	94
INPP5K	51763	hgsc.bcm.edu	37	17	1399994	1399994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	INPP5K	NM_016532	exon9	c.C1067A	p.P356H	.	.	145	6	165	0	.	68
INSIG1	3638	bcgsc.ca	37	7	155100023	155100023	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	INSIG1	NM_198336	exon6	c.A492G	p.E164E	.	.	75	4	102	0	.	90
IQSEC2	23096	hgsc.bcm.edu	37	X	53277936	53277936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IQSEC2	NM_001111125	exon6	c.A2426G	p.N809S	.	.	95	4	111	0	.	178
IQUB	154865	bcgsc.ca	37	7	123092831	123092831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IQUB	NM_178827	exon13	c.C2342A	p.P781H	.	.	223	6	249	0	.	156
IRF2BPL	64207	hgsc.bcm.edu;bcgsc.ca	37	14	77491917	77491917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IRF2BPL	NM_024496	exon1	c.T2219C	p.F740S	.	.	79	4	115	0	.	90
IRF8	3394	hgsc.bcm.edu;bcgsc.ca	37	16	85946744	85946744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IRF8	NM_002163	exon5	c.T455C	p.V152A	.	.	68	4	132	0	.	154
ITFG3	83986	hgsc.bcm.edu;bcgsc.ca	37	16	312091	312091	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITFG3	NM_032039	exon7	c.709-1G>T	.	.	.	113	5	243	0	.	90
ITGA11	22801	hgsc.bcm.edu;bcgsc.ca	37	15	68631922	68631922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGA11	NM_001004439	exon11	c.A1192G	p.T398A	.	.	58	5	85	0	.	538
ITGA2	3673	hgsc.bcm.edu	37	5	52376343	52376343	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGA2	NM_002203	exon25	c.A2931G	p.V977V	.	.	99	4	92	0	.	226
ITGA3	3675	hgsc.bcm.edu	37	17	48166578	48166578	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGA3	NM_005501	exon25	c.C3150A	p.P1050P	.	.	87	4	110	0	.	229
ITGB2	3689	hgsc.bcm.edu	37	21	46321640	46321640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB2	NM_000211	exon6	c.T508C	p.S170P	.	.	67	5	63	0	.	717
ITGB2	3689	hgsc.bcm.edu;bcgsc.ca	37	21	46330223	46330223	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB2	NM_000211	exon3	c.C123A	p.P41P	.	.	143	6	104	0	.	717
ITGB3	3690	hgsc.bcm.edu	37	17	45368371	45368371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB3	NM_000212	exon9	c.T1177C	p.S393P	.	.	113	5	92	0	.	714
ITGB4	3691	bcgsc.ca	37	17	73723747	73723747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB4	NM_001005731	exon5	c.A280G	p.T94A	.	.	103	6	72	1	.	227
ITIH6	347365	hgsc.bcm.edu	37	X	54784888	54784888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_198510	exon8	c.A1619G	p.N540S	.	.	98	4	77	0	.	.
JAKMIP1	152789	hgsc.bcm.edu;bcgsc.ca	37	4	6087187	6087187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JAKMIP1	NM_001099433	exon4	c.C794A	p.P265Q	.	.	63	4	95	0	.	292
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	15497298	15497298	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JARID2	NM_004973	exon7	c.C1842T	p.I614I	.	.	156	65	155	0	.	228
JHDM1D	80853	broad.mit.edu	37	7	139799801	139799801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JHDM1D	NM_030647	exon13	c.A1661G	p.N554S	.	.	313	7	438	0	.	91
KAT6B	23522	broad.mit.edu	37	10	76781942	76781942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_012330	exon16	c.T3325C	p.S1109P	.	.	604	8	491	4	.	.
KAT6B	23522	hgsc.bcm.edu	37	10	76790465	76790465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_012330	exon18	c.G5883A	p.M1961I	.	.	84	4	48	0	.	.
KBTBD13	390594	hgsc.bcm.edu	37	15	65370197	65370197	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001101362	exon1	c.C1044A	p.A348A	.	.	85	4	103	0	.	.
KCNH8	131096	hgsc.bcm.edu;bcgsc.ca	37	3	19575099	19575099	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCNH8	NM_144633	exon16	c.T2832C	p.Y944Y	.	.	120	5	125	0	.	524
KCNT1	57582	hgsc.bcm.edu	37	9	138594134	138594134	+	Silent	SNP	G	G	T	rs139034501	by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCNT1	NM_001272003	exon1	c.G30T	p.P10P	.	.	95	4	96	0	G|0.996;A|0.004	137
KCTD2	23510	hgsc.bcm.edu	37	17	73059137	73059137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCTD2	NM_015353	exon6	c.A787G	p.M263V	.	.	125	5	64	0	.	226
KCTD7	154881	hgsc.bcm.edu	37	7	66098342	66098342	+	Silent	SNP	C	C	T	rs150589535	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCTD7	NM_001167961	exon2	c.C225T	p.T75T	.	.	75	4	116	0	C|1.000;G|0.000	92
KDM5B	10765	bcgsc.ca	37	1	202719900	202719900	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KDM5B	NM_006618	exon13	c.C1708A	p.R570R	.	.	257	6	202	0	.	273
KIAA0020	9933	hgsc.bcm.edu;bcgsc.ca	37	9	2807906	2807906	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0020	NM_014878	exon18	c.1724-2A>G	.	.	.	73	4	42	0	.	91
KIAA0196	9897	hgsc.bcm.edu	37	8	126040930	126040930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0196	NM_014846	exon28	c.C3355A	p.P1119T	.	.	99	4	61	0	.	92
KIAA0232	9778	hgsc.bcm.edu	37	4	6882546	6882546	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0232	NM_014743	exon10	c.A4041G	p.G1347G	.	.	78	4	89	0	.	92
KIAA0319L	79932	hgsc.bcm.edu;bcgsc.ca	37	1	35928256	35928256	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0319L	NM_024874	exon8	c.T1260C	p.S420S	.	.	56	4	96	0	.	92
KIAA0556	23247	bcgsc.ca	37	16	27772734	27772734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0556	NM_015202	exon19	c.G3632A	p.C1211Y	.	.	29	3	58	0	.	141
KIAA0895L	653319	bcgsc.ca	37	16	67210787	67210787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0895L	NM_001040715	exon7	c.G1343T	p.R448L	.	.	156	6	250	1	.	68
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154524546	154524546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0922	NM_001131007	exon24	c.A2731G	p.S911G	.	.	170	147	247	0	.	92
KIAA0947	23379	hgsc.bcm.edu;bcgsc.ca	37	5	5489287	5489287	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0947	NM_015325	exon19	c.A6645G	p.A2215A	.	.	83	4	76	0	.	48
KIAA1524	57650	broad.mit.edu	37	3	108279556	108279556	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA1524	NM_020890	exon14	c.A1767G	p.K589K	.	.	495	6	462	1	.	92
KIAA1549L	25758	bcgsc.ca	37	11	33565826	33565826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_012194	exon1	c.T1826C	p.F609S	.	.	49	4	58	0	.	.
KIAA1549L	25758	hgsc.bcm.edu;bcgsc.ca	37	11	33573676	33573676	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_012194	exon5	c.G2853T	p.A951A	.	.	75	4	103	0	.	.
KIAA1586	57691	hgsc.bcm.edu	37	6	56917800	56917800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA1586	NM_020931	exon4	c.G503T	p.R168L	.	.	97	4	75	0	.	44
KIAA1755	85449	hgsc.bcm.edu	37	20	36851952	36851952	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA1755	NM_001029864	exon9	c.T2256C	p.P752P	.	.	79	4	66	0	.	95
KIDINS220	57498	broad.mit.edu	37	2	8873630	8873630	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIDINS220	NM_020738	exon29	c.C3997T	p.L1333L	.	.	259	8	255	0	.	93
KIF16B	55614	hgsc.bcm.edu;bcgsc.ca	37	20	16492142	16492142	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIF16B	NM_001199865	exon6	c.A477G	p.R159R	.	.	94	4	106	0	.	291
KIF17	57576	hgsc.bcm.edu;bcgsc.ca	37	1	21014288	21014288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIF17	NM_020816	exon8	c.G1531T	p.D511Y	.	.	73	4	124	0	.	94
KL	9365	hgsc.bcm.edu;bcgsc.ca	37	13	33635814	33635814	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KL	NM_004795	exon4	c.C2598T	p.L866L	.	.	83	4	88	0	.	155
KLF17	128209	bcgsc.ca	37	1	44595538	44595538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLF17	NM_173484	exon2	c.A595G	p.T199A	.	.	63	5	73	1	.	92
KLF17	128209	hgsc.bcm.edu;bcgsc.ca	37	1	44595054	44595054	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLF17	NM_173484	exon2	c.C111T	p.N37N	.	.	84	4	144	0	.	92
KLHDC1	122773	bcgsc.ca	37	14	50176456	50176456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLHDC1	NM_172193	exon3	c.C197A	p.P66Q	.	.	76	4	116	0	.	91
KLHDC1	122773	bcgsc.ca	37	14	50218334	50218334	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLHDC1	NM_172193	exon13	c.T1065C	p.S355S	.	.	101	4	136	0	.	91
KLHL2	11275	hgsc.bcm.edu	37	4	166226800	166226800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLHL2	NM_001161521	exon9	c.G974T	p.R325L	.	.	99	4	152	0	.	226
KLHL8	57563	hgsc.bcm.edu;bcgsc.ca	37	4	88098001	88098001	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLHL8	NM_020803	exon6	c.T1116C	p.G372G	.	.	97	4	156	0	.	90
KNDC1	85442	hgsc.bcm.edu	37	10	135025267	135025267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KNDC1	NM_152643	exon23	c.G4141T	p.G1381C	.	.	89	4	44	0	.	229
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	123055607	123055607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KNTC1	NM_014708	exon24	c.G1953C	p.E651D	.	.	232	15	254	0	.	543
KPNA7	402569	hgsc.bcm.edu;bcgsc.ca	37	7	98792707	98792707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KPNA7	NM_001145715	exon4	c.T539C	p.L180P	.	.	73	4	129	0	.	158
KRCC1	51315	broad.mit.edu	37	2	88327465	88327465	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRCC1	NM_016618	exon4	c.C618A	p.T206T	.	.	784	13	852	1	.	69
KRT1	3848	hgsc.bcm.edu;bcgsc.ca	37	12	53069530	53069530	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT1	NM_006121	exon9	c.1476-2A>G	.	.	.	139	6	153	0	.	92
KRT2	3849	hgsc.bcm.edu	37	12	53040547	53040547	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT2	NM_000423	exon7	c.A1446G	p.K482K	.	.	67	4	66	0	.	92
KRT77	374454	hgsc.bcm.edu;bcgsc.ca	37	12	53086273	53086273	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT77	NM_175078	exon7	c.G1359A	p.L453L	.	.	100	5	102	0	.	187
KRT82	3888	bcgsc.ca	37	12	52799730	52799730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT82	NM_033033	exon1	c.C332A	p.P111Q	.	.	200	6	168	0	.	92
KRTAP13-4	284827	bcgsc.ca	37	21	31802670	31802670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRTAP13-4	NM_181600	exon1	c.C77A	p.P26H	.	.	242	10	241	1	.	90
KRTAP4-9	100132386	bcgsc.ca	37	17	39262096	39262096	+	Silent	SNP	C	C	T	rs76327324	byfrequency	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001146041	exon1	c.C456T	p.P152P	.	.	123	20	98	6	C|0.500;T|0.500	.
KTI12	112970	hgsc.bcm.edu	37	1	52499377	52499377	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KTI12	NM_138417	exon1	c.A57G	p.E19E	.	.	78	5	100	0	.	91
L3MBTL3	84456	bcgsc.ca	37	6	130454666	130454666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	L3MBTL3	NM_032438	exon21	c.C2036A	p.P679Q	.	.	66	4	42	0	.	96
LAMA2	3908	hgsc.bcm.edu	37	6	129722435	129722435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LAMA2	NM_000426	exon38	c.A5512G	p.I1838V	.	.	97	4	111	0	.	162
LAMA3	3909	hgsc.bcm.edu;bcgsc.ca	37	18	21355846	21355846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LAMA3	NM_001127717	exon10	c.A1364G	p.E455G	.	.	101	5	122	0	.	100
LANCL1	10314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211341073	211341073	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LANCL1	NM_001136574	exon2	c.C48G	p.S16S	.	.	322	163	374	0	.	90
LAS1L	81887	bcgsc.ca	37	X	64734730	64734730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LAS1L	NM_031206	exon13	c.G2051T	p.R684L	.	.	225	6	212	0	.	196
LATS2	26524	hgsc.bcm.edu	37	13	21555762	21555762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LATS2	NM_014572	exon6	c.G2508T	p.M836I	.	.	90	4	64	0	.	1404
LDHD	197257	hgsc.bcm.edu	37	16	75149474	75149474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LDHD	NM_194436	exon2	c.C157A	p.Q53K	.	.	101	5	153	0	.	90
LDOC1L	84247	hgsc.bcm.edu;bcgsc.ca	37	22	44893427	44893427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LDOC1L	NM_032287	exon2	c.C10T	p.P4S	.	.	66	4	119	0	.	69
LEPR	3953	hgsc.bcm.edu;bcgsc.ca	37	1	66067256	66067256	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LEPR	NM_001003680	exon9	c.T1176C	p.T392T	.	.	90	4	166	0	.	91
LHCGR	3973	hgsc.bcm.edu	37	2	48914978	48914978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LHCGR	NM_000233	exon11	c.G1958T	p.R653M	.	.	113	5	121	0	.	589
LHX1	3975	hgsc.bcm.edu	37	17	35300345	35300345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LHX1	NM_005568	exon5	c.T1138C	p.S380P	.	.	82	5	68	0	.	92
LIG1	3978	hgsc.bcm.edu	37	19	48630537	48630537	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIG1	NM_000234	exon21	c.A2001G	p.G667G	.	.	98	4	89	0	.	722
LIG3	3980	hgsc.bcm.edu	37	17	33319691	33319691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIG3	NM_013975	exon8	c.A1435G	p.T479A	.	.	95	4	90	0	.	728
LILRA5	353514	hgsc.bcm.edu	37	19	54822783	54822783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LILRA5	NM_181879	exon5	c.A613G	p.T205A	.	.	132	6	157	0	.	91
LIMD1	8994	hgsc.bcm.edu	37	3	45637017	45637017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIMD1	NM_014240	exon1	c.C646A	p.P216T	.	.	61	4	66	0	.	279
LIN7C	55327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27523454	27523454	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIN7C	NM_018362	exon2	c.A51G	p.A17A	.	.	87	28	94	0	.	90
LIPA	3988	hgsc.bcm.edu	37	10	90974647	90974647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIPA	NM_000235	exon10	c.G1138T	p.G380C	.	.	95	4	57	0	.	90
LIPH	200879	hgsc.bcm.edu	37	3	185236957	185236957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIPH	NM_139248	exon6	c.T859C	p.S287P	.	.	99	4	117	0	.	92
LLGL2	3993	hgsc.bcm.edu	37	17	73566143	73566143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LLGL2	NM_004524	exon15	c.C1681A	p.H561N	.	.	88	4	83	0	.	251
LMO2	4005	hgsc.bcm.edu;bcgsc.ca	37	11	33890910	33890910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LMO2	NM_005574	exon4	c.A230G	p.K77R	.	.	45	4	41	0	.	658
LNP1	348801	broad.mit.edu	37	3	100174750	100174750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LNP1	NM_001085451	exon4	c.T517C	p.F173L	.	.	765	9	736	3	.	22
LOC642236	0	bcgsc.ca	37	9	68433548	68433548	+	RNA	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	.	.	.	.	.	.	1025	40	797	33	.	.
LOC642236	0	bcgsc.ca	37	9	68433550	68433550	+	RNA	SNP	A	A	G	rs144797473		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	.	.	.	.	.	.	1048	41	826	35	.	.
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	19	14273762	14273762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LPHN1	NM_001008701	exon6	c.G866T	p.R289L	.	.	89	4	62	0	.	523
LPPR1	0	hgsc.bcm.edu	37	9	104079680	104079680	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_207299	exon7	c.C847T	p.Q283X	.	.	68	4	97	0	.	.
LRGUK	136332	hgsc.bcm.edu;bcgsc.ca	37	7	133876488	133876488	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRGUK	NM_144648	exon12	c.T1416C	p.D472D	.	.	87	4	154	0	.	227
LRP1	4035	hgsc.bcm.edu	37	12	57539101	57539101	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRP1	NM_002332	exon6	c.A669G	p.T223T	.	.	87	4	84	0	.	596
LRP1	4035	hgsc.bcm.edu	37	12	57599189	57599189	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRP1	NM_002332	exon74	c.C11391A	p.R3797R	.	.	93	4	66	0	.	596
LRP2	4036	bcgsc.ca	37	2	170058269	170058269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRP2	NM_004525	exon44	c.G8321T	p.G2774V	.	.	68	4	55	1	.	175
LRP2	4036	hgsc.bcm.edu	37	2	170104009	170104009	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRP2	NM_004525	exon20	c.T2787C	p.T929T	.	.	86	4	77	0	.	175
LRP2BP	55805	bcgsc.ca	37	4	186299238	186299238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRP2BP	NM_018409	exon1	c.A103G	p.T35A	.	.	187	6	263	0	.	90
LRRC15	131578	hgsc.bcm.edu	37	3	194080638	194080638	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC15	NM_001135057	exon3	c.C1153T	p.Q385X	.	.	91	4	117	0	.	71
LRRC16B	90668	hgsc.bcm.edu	37	14	24523712	24523712	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC16B	NM_138360	exon5	c.T354C	p.P118P	.	.	71	4	79	0	.	139
LRRC17	10234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102584705	102584705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC17	NM_001031692	exon4	c.A977G	p.N326S	.	.	78	33	109	0	.	91
LRRC46	90506	bcgsc.ca	37	17	45913819	45913819	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC46	NM_033413	exon7	c.T573C	p.S191S	.	.	165	6	172	0	.	91
LRRC56	115399	hgsc.bcm.edu;bcgsc.ca	37	11	540775	540775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC56	NM_198075	exon4	c.C91T	p.P31S	.	.	69	4	67	0	.	91
LRRC8D	55144	hgsc.bcm.edu	37	1	90399028	90399028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC8D	NM_018103	exon3	c.C401A	p.P134Q	.	.	95	4	136	0	.	92
LRRIQ4	344657	hgsc.bcm.edu	37	3	169546665	169546665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001080460	exon2	c.G1139T	p.G380V	.	.	88	4	69	0	.	.
LRRN1	57633	broad.mit.edu;bcgsc.ca	37	3	3888147	3888147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRN1	NM_020873	exon2	c.T1822C	p.S608P	.	.	143	5	145	2	.	90
LSR	51599	hgsc.bcm.edu	37	19	35757273	35757273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LSR	NM_205834	exon6	c.G934T	p.G312C	.	.	98	4	105	0	.	90
LYST	1130	broad.mit.edu;bcgsc.ca	37	1	235884034	235884034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LYST	NM_000081	exon40	c.T9487C	p.Y3163H	.	.	273	7	173	0	.	143
MAGEC1	9947	bcgsc.ca	37	X	140996399	140996399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAGEC1	NM_005462	exon4	c.T3209C	p.L1070P	.	.	138	5	175	0	.	133
MAGEC1	9947	broad.mit.edu;bcgsc.ca	37	X	140994144	140994144	+	Silent	SNP	T	T	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAGEC1	NM_005462	exon4	c.T954G	p.L318L	.	.	494	13	489	1	.	133
MAMDC2	256691	hgsc.bcm.edu	37	9	72659502	72659502	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAMDC2	NM_153267	exon2	c.C37T	p.L13L	.	.	99	4	86	0	.	91
MAN2C1	4123	hgsc.bcm.edu	37	15	75649212	75649212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAN2C1	NM_001256494	exon22	c.A2630G	p.E877G	.	.	86	4	115	0	.	90
MAP1B	4131	hgsc.bcm.edu	37	5	71492350	71492350	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP1B	NM_005909	exon5	c.T3168C	p.G1056G	.	.	78	4	100	0	.	155
MAP3K13	9175	hgsc.bcm.edu	37	3	185198180	185198180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP3K13	NM_004721	exon13	c.C2662A	p.L888M	.	.	73	4	134	0	.	548
MAP3K6	9064	hgsc.bcm.edu	37	1	27691344	27691344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP3K6	NM_004672	exon2	c.G400A	p.G134S	.	.	123	5	165	0	.	1523
MAP4	4134	bcgsc.ca	37	3	47956351	47956351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP4	NM_001134364	exon8	c.A1955G	p.K652R	.	.	196	6	233	1	.	93
MAP4K3	8491	hgsc.bcm.edu	37	2	39535144	39535144	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP4K3	NM_003618	exon15	c.C1059T	p.P353P	.	.	75	4	88	0	.	550
MAP4K4	9448	hgsc.bcm.edu	37	2	102486261	102486261	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP4K4	NM_145686	exon20	c.2306+2T>C	.	.	.	112	5	78	0	.	547
MAPK3	5595	bcgsc.ca	37	16	30128526	30128526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAPK3	NM_001040056	exon6	c.T856C	p.S286P	.	.	142	5	267	1	.	1402
MAPK4	5596	hgsc.bcm.edu	37	18	48255833	48255833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAPK4	NM_002747	exon6	c.T1373C	p.L458P	.	.	66	4	63	0	.	1404
MARCH7	64844	hgsc.bcm.edu	37	2	160605076	160605076	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARCH7	NM_022826	exon5	c.A1275G	p.R425R	.	.	87	4	77	0	.	68
MARK2	2011	hgsc.bcm.edu	37	11	63666539	63666539	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARK2	NM_001163296	exon7	c.C490T	p.Q164X	.	.	103	5	93	0	.	766
MARK4	57787	hgsc.bcm.edu	37	19	45801087	45801087	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARK4	NM_001199867	exon15	c.T1752C	p.G584G	.	.	88	7	46	0	.	782
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57910119	57910119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARS	NM_004990	exon20	c.A2555C	p.Q852P	.	.	156	69	163	0	.	654
MCM7	4176	hgsc.bcm.edu	37	7	99691801	99691801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MCM7	NM_005916	exon13	c.G1843A	p.A615T	.	.	75	4	91	0	.	651
MCMBP	79892	hgsc.bcm.edu	37	10	121608999	121608999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MCMBP	NM_024834	exon7	c.T664C	p.S222P	.	.	94	4	51	0	.	93
MDFIC	29969	hgsc.bcm.edu;bcgsc.ca	37	7	114619590	114619590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDFIC	NM_199072	exon4	c.A574G	p.T192A	.	.	87	4	140	0	.	91
MDN1	23195	hgsc.bcm.edu	37	6	90428309	90428309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDN1	NM_014611	exon43	c.A6359G	p.K2120R	.	.	78	4	71	0	.	100
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90368429	90368429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDN1	NM_014611	exon89	c.A14921C	p.E4974A	.	.	314	149	319	1	.	100
MED12L	116931	hgsc.bcm.edu;bcgsc.ca	37	3	151107911	151107911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MED12L	NM_053002	exon36	c.T5491C	p.S1831P	.	.	55	4	52	0	.	576
MED14	9282	broad.mit.edu	37	X	40586074	40586074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MED14	NM_004229	exon3	c.G272T	p.R91L	.	.	441	8	488	1	.	289
MEFV	4210	hgsc.bcm.edu	37	16	3306411	3306411	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MEFV	NM_000243	exon1	c.C177A	p.T59T	.	.	87	4	136	0	.	228
MFSD2A	84879	hgsc.bcm.edu	37	1	40430920	40430920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MFSD2A	NM_001136493	exon4	c.T430C	p.F144L	.	.	95	4	116	0	.	92
MGRN1	23295	hgsc.bcm.edu;bcgsc.ca	37	16	4715144	4715144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MGRN1	NM_001142291	exon7	c.T670C	p.F224L	.	.	61	4	154	0	.	92
MIB1	57534	hgsc.bcm.edu	37	18	19383906	19383906	+	Silent	SNP	T	T	C	rs144652547		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MIB1	NM_020774	exon10	c.T1410C	p.A470A	.	.	88	4	66	0	T|1.000;C|0.000	526
MID2	11043	hgsc.bcm.edu	37	X	107097839	107097839	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MID2	NM_012216	exon3	c.C721T	p.Q241X	.	.	101	5	106	0	.	227
MLC1	23209	hgsc.bcm.edu	37	22	50515343	50515343	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MLC1	NM_139202	exon8	c.526-2A>G	.	.	.	99	4	134	0	.	91
MMAA	166785	hgsc.bcm.edu;bcgsc.ca	37	4	146575291	146575291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMAA	NM_172250	exon6	c.C965A	p.P322Q	.	.	76	4	94	0	.	91
MMGT1	93380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135053250	135053250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMGT1	NM_173470	exon2	c.A99T	p.L33F	.	.	484	245	578	0	.	130
MMP19	4327	hgsc.bcm.edu	37	12	56234938	56234938	+	Missense_Mutation	SNP	C	C	A	rs202159629	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMP19	NM_001272101	exon3	c.G256T	p.G86C	.	.	45	4	35	0	C|0.999;T|0.001	227
MMP21	118856	hgsc.bcm.edu	37	10	127462611	127462611	+	Silent	SNP	G	G	A	rs150375911		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMP21	NM_147191	exon2	c.C486T	p.Y162Y	.	.	4	4	0	0	G|0.989;A|0.011	228
MPI	4351	hgsc.bcm.edu	37	15	75182887	75182887	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MPI	NM_002435	exon2	c.G36T	p.A12A	.	.	66	4	108	0	.	92
MPO	4353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	56355209	56355209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MPO	NM_000250	exon7	c.C1183T	p.R395C	.	.	37	15	38	0	.	156
MPP6	51678	hgsc.bcm.edu	37	7	24690104	24690104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MPP6	NM_016447	exon6	c.G424T	p.G142C	.	.	84	5	108	0	.	90
MRI1	84245	bcgsc.ca	37	19	13876795	13876795	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MRI1	NM_001031727	exon3	c.G399T	p.L133L	.	.	151	5	129	0	.	91
MRPL38	64978	broad.mit.edu	37	17	73895267	73895267	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MRPL38	NM_032478	exon8	c.C978A	p.S326S	.	.	414	6	338	0	.	46
MRPS35	60488	bcgsc.ca	37	12	27908356	27908356	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MRPS35	NM_021821	exon8	c.C945A	p.S315S	.	.	248	6	229	1	.	90
MSANTD3	91283	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103212870	103212870	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001198805	exon3	c.C450T	p.C150C	.	.	195	86	173	0	.	.
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu;bcgsc.ca	37	9	103312401	103312401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001198812	exon7	c.G956A	p.G319E	.	.	63	4	65	0	.	.
MSH6	2956	hgsc.bcm.edu	37	2	48027261	48027261	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MSH6	NM_000179	exon4	c.T2139C	p.D713D	.	.	100	4	95	0	.	3014
MTBP	27085	hgsc.bcm.edu	37	8	121528368	121528368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MTBP	NM_022045	exon18	c.G2183T	p.R728L	.	.	100	4	106	0	.	228
MTCH1	23787	bcgsc.ca	37	6	36938203	36938203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MTCH1	NM_001271641	exon10	c.T1001C	p.L334P	.	.	175	6	147	0	.	227
MTHFD1	4522	bcgsc.ca	37	14	64882212	64882212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MTHFD1	NM_005956	exon5	c.G377T	p.G126V	.	.	202	7	318	0	.	92
MUC17	140453	bcgsc.ca	37	7	100682909	100682909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUC17	NM_001040105	exon3	c.G8212T	p.G2738C	.	.	158	5	230	1	.	95
MUC2	4583	bcgsc.ca	37	11	1093147	1093147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUC2	NM_002457	exon30	c.A4966T	p.T1656S	.	.	347	14	335	12	.	90
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195517320	195517320	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUC4	NM_018406	exon2	c.C1131G	p.T377T	.	.	377	117	394	0	.	90
MUC6	4588	bcgsc.ca	37	11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUC6	NM_005961	exon31	c.C6000G	p.H2000Q	.	.	3505	99	3764	85	.	23
MUM1L1	139221	hgsc.bcm.edu	37	X	105450466	105450466	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUM1L1	NM_152423	exon5	c.A1041G	p.E347E	.	.	100	4	104	0	.	133
MUTYH	4595	hgsc.bcm.edu	37	1	45800108	45800108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUTYH	NM_012222	exon2	c.A112G	p.K38E	.	.	79	4	133	0	.	1083
MYH14	79784	hgsc.bcm.edu	37	19	50775107	50775107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYH14	NM_001145809	exon26	c.A3173G	p.E1058G	.	.	90	4	73	0	.	23
MYLK2	85366	hgsc.bcm.edu;bcgsc.ca	37	20	30419870	30419870	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYLK2	NM_033118	exon12	c.C1641A	p.A547A	.	.	98	6	77	0	.	760
MYO16	23026	hgsc.bcm.edu	37	13	109318307	109318307	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYO16	NM_001198950	exon2	c.C102A	p.P34P	.	.	63	4	50	0	.	142
MYO5C	55930	hgsc.bcm.edu	37	15	52532010	52532010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYO5C	NM_018728	exon21	c.T2623C	p.F875L	.	.	100	4	129	0	.	145
MYO9A	4649	hgsc.bcm.edu;bcgsc.ca	37	15	72196317	72196317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYO9A	NM_006901	exon21	c.A2830G	p.T944A	.	.	91	4	125	0	.	93
MYOC	4653	bcgsc.ca	37	1	171605266	171605266	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOC	NM_000261	exon3	c.C1314A	p.T438T	.	.	472	11	380	0	.	226
MYOM1	8736	bcgsc.ca	37	18	3089558	3089558	+	Missense_Mutation	SNP	C	C	A	rs112504951	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOM1	NM_003803	exon28	c.G4046T	p.R1349L	.	.	62	4	55	0	C|0.999;T|0.001	94
MYOM1	8736	hgsc.bcm.edu	37	18	3071875	3071875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOM1	NM_003803	exon37	c.T4721C	p.V1574A	.	.	95	4	86	0	.	94
MYOM1	8736	hgsc.bcm.edu;bcgsc.ca	37	18	3187546	3187546	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOM1	NM_003803	exon5	c.G861T	p.T287T	.	.	89	4	115	0	.	94
MYOZ2	51778	hgsc.bcm.edu;bcgsc.ca	37	4	120079175	120079175	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOZ2	NM_016599	exon4	c.247-2A>G	.	.	.	75	4	146	0	.	90
MYOZ3	91977	hgsc.bcm.edu	37	5	150056368	150056368	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOZ3	NM_001122853	exon7	c.T687C	p.R229R	.	.	82	4	77	0	.	91
MZT2A	653784	hgsc.bcm.edu	37	2	132249809	132249809	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MZT2A	NM_001085365	exon1	c.G141T	p.A47A	.	.	42	4	39	0	.	68
NAA16	79612	hgsc.bcm.edu	37	13	41897285	41897285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAA16	NM_001110798	exon5	c.A496G	p.M166V	.	.	94	4	97	0	.	90
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41892974	41892974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAA16	NM_001110798	exon3	c.T172C	p.C58R	.	.	82	4	84	0	.	90
NAB1	4664	hgsc.bcm.edu;bcgsc.ca	37	2	191548468	191548468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAB1	NM_005966	exon7	c.G1010T	p.G337V	.	.	80	5	91	0	.	226
NADKD1	133686	bcgsc.ca	37	5	36200345	36200345	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NADKD1	NM_001085411	exon10	c.A1050G	p.R350R	.	.	161	5	121	0	.	92
NAP1L5	266812	hgsc.bcm.edu	37	4	89618533	89618533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAP1L5	NM_153757	exon1	c.G373A	p.G125S	.	.	100	4	173	0	.	91
NBAS	51594	bcgsc.ca	37	2	15374847	15374847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NBAS	NM_015909	exon46	c.C5968A	p.L1990I	.	.	241	6	201	0	.	94
NBEA	26960	hgsc.bcm.edu;bcgsc.ca	37	13	35517180	35517180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NBEA	NM_015678	exon1	c.G223T	p.A75S	.	.	116	5	165	0	.	144
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	19359573	19359573	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NCAN	NM_004386	exon14	c.C3702A	p.Y1234X	.	.	126	60	129	0	.	94
NCKAP1L	3071	bcgsc.ca	37	12	54893233	54893233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NCKAP1L	NM_005337	exon2	c.A197G	p.D66G	.	.	175	6	177	0	.	93
NCKIPSD	51517	hgsc.bcm.edu	37	3	48720411	48720411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NCKIPSD	NM_184231	exon2	c.G206A	p.R69Q	.	.	99	4	94	0	.	1082
NDOR1	27158	hgsc.bcm.edu	37	9	140109380	140109380	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NDOR1	NM_001144026	exon8	c.G975A	p.L325L	.	.	98	4	56	0	.	90
NDUFA10	4705	broad.mit.edu	37	2	240900598	240900598	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NDUFA10	NM_004544	exon10	c.G1005T	p.P335P	.	.	164	5	200	0	.	514
NDUFAF1	51103	hgsc.bcm.edu	37	15	41689120	41689120	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NDUFAF1	NM_016013	exon2	c.T138C	p.P46P	.	.	100	4	188	0	.	91
NEB	4703	broad.mit.edu	37	2	152518687	152518687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NEB	NM_004543	exon46	c.A5932G	p.M1978V	.	.	665	11	743	2	.	145
NEK10	152110	bcgsc.ca	37	3	27387636	27387636	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NEK10	NM_199347	exon5	c.A204G	p.G68G	.	.	119	5	130	1	.	695
NEU4	129807	hgsc.bcm.edu	37	2	242756144	242756144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NEU4	NM_001167599	exon3	c.A296G	p.N99S	.	.	99	4	115	0	.	44
NF1	4763	hgsc.bcm.edu	37	17	29676237	29676237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NF1	NM_001042492	exon49	c.A7289G	p.E2430G	.	.	72	5	66	0	.	3353
NHEJ1	79840	bcgsc.ca	37	2	220011437	220011437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NHEJ1	NM_024782	exon5	c.G553A	p.E185K	.	.	182	6	185	1	.	227
NHLRC3	387921	hgsc.bcm.edu	37	13	39613731	39613731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NHLRC3	NM_001012754	exon3	c.T268C	p.F90L	.	.	84	4	81	0	.	91
NKD1	85407	hgsc.bcm.edu;bcgsc.ca	37	16	50667325	50667325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NKD1	NM_033119	exon10	c.C1046T	p.P349L	.	.	149	7	275	0	.	226
NKX6-3	157848	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	41503971	41503971	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NKX6-3	NM_152568	exon2	c.C405T	p.V135V	.	.	97	43	97	1	.	90
NLRP7	199713	bcgsc.ca	37	19	55439069	55439069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NLRP7	NM_001127255	exon10	c.A2885G	p.E962G	.	.	180	7	161	0	.	291
NLRP9	338321	hgsc.bcm.edu	37	19	56244026	56244026	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NLRP9	NM_176820	exon2	c.C1171A	p.R391R	.	.	90	4	62	0	.	294
NOBOX	135935	hgsc.bcm.edu	37	7	144096261	144096261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NOBOX	NM_001080413	exon8	c.G1251A	p.M417I	.	.	61	4	99	0	.	69
NOS1	4842	hgsc.bcm.edu	37	12	117653120	117653120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NOS1	NM_001204218	exon30	c.C4401A	p.S1467R	.	.	86	4	92	0	.	154
NPM1	4869	hgsc.bcm.edu	37	5	170827199	170827199	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPM1	NM_199185	exon7	c.A567G	p.K189K	.	.	125	5	137	0	.	12448
NPPC	4880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	232790144	232790144	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPPC	NM_024409	exon2	c.G372A	p.L124L	.	.	110	22	90	0	.	90
NPTX1	4884	hgsc.bcm.edu;bcgsc.ca	37	17	78445639	78445639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPTX1	NM_002522	exon4	c.G970T	p.G324W	.	.	84	4	74	0	.	90
NRCAM	4897	bcgsc.ca	37	7	107831705	107831705	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NRCAM	NM_001037132	exon16	c.C1926A	p.P642P	.	.	243	8	337	0	.	156
NRG2	9542	broad.mit.edu;bcgsc.ca	37	5	139232521	139232521	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NRG2	NM_013982	exon8	c.C1408A	p.R470R	.	.	163	8	164	1	.	526
NSUN7	79730	hgsc.bcm.edu	37	4	40762502	40762502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NSUN7	NM_024677	exon3	c.C350T	p.T117I	.	.	94	4	124	0	.	90
NUDT13	25961	bcgsc.ca	37	10	74879886	74879886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUDT13	NM_015901	exon3	c.A194G	p.Q65R	.	.	163	6	110	0	.	90
NUDT15	55270	hgsc.bcm.edu;bcgsc.ca	37	13	48611895	48611895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUDT15	NM_018283	exon1	c.G13A	p.A5T	.	.	61	4	74	0	.	90
NUP210	23225	hgsc.bcm.edu	37	3	13364885	13364885	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUP210	NM_024923	exon34	c.C4692T	p.P1564P	.	.	89	4	89	0	.	256
NUP98	4928	hgsc.bcm.edu;bcgsc.ca	37	11	3716712	3716712	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUP98	NM_016320	exon26	c.A4134G	p.R1378R	.	.	71	4	57	0	.	703
OAS2	4939	hgsc.bcm.edu;bcgsc.ca	37	12	113444238	113444238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OAS2	NM_002535	exon8	c.A1489G	p.T497A	.	.	98	4	131	0	.	91
OR10G9	219870	broad.mit.edu	37	11	123894261	123894261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR10G9	NM_001001953	exon1	c.C542A	p.P181Q	.	.	525	10	534	0	.	92
OR10V1	390201	bcgsc.ca	37	11	59481079	59481079	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR10V1	NM_001005324	exon1	c.G240A	p.L80L	.	.	165	6	146	0	.	68
OR1K1	392392	hgsc.bcm.edu	37	9	125562726	125562726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR1K1	NM_080859	exon1	c.G325T	p.G109W	.	.	64	4	51	0	.	69
OR1N1	138883	bcgsc.ca	37	9	125289536	125289536	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR1N1	NM_012363	exon1	c.C37A	p.R13R	.	.	174	6	141	0	.	133
OR2B3	442184	hgsc.bcm.edu;bcgsc.ca	37	6	29054566	29054566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2B3	NM_001005226	exon1	c.G460T	p.G154C	.	.	102	5	72	0	.	1
OR2T2	401992	broad.mit.edu;bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	rs199823862		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	TGCTGCG	TGCTGCG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2T2	NM_001004136	exon1	c.607_613del	p.203_205del	.	.	251	5	389	0	.	23
OR2T2	401992	ucsc.edu	37	1	248616749	248616749	+	Silent	SNP	C	C	G	rs1770044	byfrequency	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2T2	NM_001004136	exon1	c.C651G	p.V217V	.	.	57	11	300	0	C|0.500;G|0.500	23
OR2T3	343173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248637025	248637025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2T3	NM_001005495	exon1	c.A374G	p.Y125C	.	.	787	209	545	0	.	69
OR2V1	26693	bcgsc.ca	37	5	180552184	180552184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001258283	exon1	c.T121C	p.C41R	.	.	188	6	168	0	.	.
OR4D9	390199	bcgsc.ca	37	11	59283169	59283169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR4D9	NM_001004711	exon1	c.T784C	p.F262L	.	.	209	7	215	1	.	68
OR51F1	256892	broad.mit.edu	37	11	4790219	4790219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR51F1	NM_001004752	exon1	c.T929C	p.L310P	.	.	83	4	81	0	.	70
OR8A1	390275	hgsc.bcm.edu;bcgsc.ca	37	11	124440852	124440852	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR8A1	NM_001005194	exon1	c.G888T	p.T296T	.	.	154	8	180	0	.	69
OR8J3	81168	broad.mit.edu	37	11	55904793	55904793	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR8J3	NM_001004064	exon1	c.G402T	p.V134V	.	.	360	7	339	1	.	70
OR9G4	283189	hgsc.bcm.edu	37	11	56511197	56511197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR9G4	NM_001005284	exon1	c.G91T	p.G31C	.	.	95	4	138	0	.	71
ORC5	5001	hgsc.bcm.edu	37	7	103808900	103808900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ORC5	NM_181747	exon9	c.A898G	p.T300A	.	.	80	4	112	0	.	206
OSBPL3	26031	hgsc.bcm.edu	37	7	24870476	24870476	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OSBPL3	NM_015550	exon16	c.C1795A	p.R599R	.	.	80	4	119	0	.	204
OSBPL6	114880	hgsc.bcm.edu;bcgsc.ca	37	2	179197627	179197627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OSBPL6	NM_001201482	exon8	c.G516T	p.W172C	.	.	122	5	126	0	.	69
OTOF	9381	hgsc.bcm.edu	37	2	26690270	26690270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OTOF	NM_194248	exon34	c.C4190T	p.A1397V	.	.	117	5	129	0	.	135
OTOL1	131149	hgsc.bcm.edu	37	3	161221475	161221475	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001080440	exon4	c.T1179C	p.H393H	.	.	72	4	71	0	.	.
OTX2	5015	hgsc.bcm.edu	37	14	57271044	57271044	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OTX2	NM_001270525	exon2	c.A135G	p.K45K	.	.	89	4	127	0	.	205
OXCT1	5019	bcgsc.ca	37	5	41731865	41731865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OXCT1	NM_000436	exon17	c.C1529A	p.P510Q	.	.	361	8	371	0	.	133
PABPN1L	390748	hgsc.bcm.edu	37	16	88932215	88932215	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001080487	exon2	c.G390A	p.V130V	.	.	124	5	198	0	.	.
PALM2-AKAP2	445815	hgsc.bcm.edu	37	9	112900259	112900259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PALM2-AKAP2	NM_007203	exon8	c.C2435A	p.A812D	.	.	90	4	73	0	.	475
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	102237061	102237061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAM	NM_138822	exon3	c.C212A	p.S71Y	.	.	382	137	380	1	.	68
PANX1	24145	bcgsc.ca	37	11	93913408	93913408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PANX1	NM_015368	exon4	c.A1186G	p.T396A	.	.	208	6	243	0	.	68
PANX2	56666	hgsc.bcm.edu	37	22	50609290	50609290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PANX2	NM_052839	exon1	c.T131C	p.L44P	.	.	55	4	88	0	.	131
PAPD4	167153	hgsc.bcm.edu	37	5	78938677	78938677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAPD4	NM_173797	exon8	c.A695G	p.K232R	.	.	125	5	121	0	.	69
PAPLN	89932	hgsc.bcm.edu	37	14	73719406	73719406	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PAPLN,NS,malignant_melanoma,+1	PAPLN	NM_173462	exon10	c.C936A	p.P312P	.	.	60	4	117	0	.	70
PAPSS1	9061	hgsc.bcm.edu	37	4	108576006	108576006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAPSS1	NM_005443	exon8	c.G946A	p.D316N	.	.	95	4	151	0	.	94
PARP6	56965	hgsc.bcm.edu	37	15	72552968	72552968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PARP6	NM_020214	exon9	c.C607A	p.L203I	.	.	67	4	109	0	.	522
PATL1	219988	hgsc.bcm.edu	37	11	59406813	59406813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PATL1	NM_152716	exon17	c.A2093G	p.D698G	.	.	91	4	109	0	.	1
PATL2	197135	bcgsc.ca	37	15	44961753	44961753	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145112	exon10	c.A885G	p.E295E	.	.	25	3	35	0	.	.
PATZ1	23598	hgsc.bcm.edu	37	22	31724792	31724792	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PATZ1	NM_032052	exon4	c.C1561T	p.Q521X	.	.	73	4	105	0	.	590
PC	5091	hgsc.bcm.edu	37	11	66639568	66639568	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PC	NM_000920	exon3	c.C63A	p.T21T	.	.	89	4	89	0	.	228
PC	5091	hgsc.bcm.edu;bcgsc.ca	37	11	66639169	66639169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PC	NM_000920	exon4	c.A310G	p.K104E	.	.	88	4	86	0	.	228
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	140579924	140579924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCDHB11	NM_018931	exon1	c.G577T	p.E193X	.	.	262	123	196	0	.	96
PCDHB15	56121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140626597	140626597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCDHB15	NM_018935	exon1	c.C1451G	p.A484G	.	.	277	125	240	0	.	156
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140735864	140735864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_018917	exon1	c.T1097C	p.I366T	.	.	114	45	91	0	.	.
PCNX	22990	bcgsc.ca	37	14	71413676	71413676	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCNX	NM_014982	exon2	c.G198T	p.V66V	.	.	141	6	213	2	.	91
PCNX	22990	hgsc.bcm.edu	37	14	71517418	71517418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCNX	NM_014982	exon23	c.C4388T	p.P1463L	.	.	97	4	152	0	.	91
PCNXL2	80003	hgsc.bcm.edu	37	1	233136202	233136202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCNXL2	NM_014801	exon30	c.T5177C	p.V1726A	.	.	97	4	77	0	.	91
PCSK9	255738	bcgsc.ca	37	1	55525242	55525242	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCSK9	NM_174936	exon10	c.A1587G	p.L529L	.	.	80	6	123	1	.	93
PDCD6IP	10015	broad.mit.edu;bcgsc.ca	37	3	33870347	33870347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDCD6IP	NM_001162429	exon7	c.G735T	p.E245D	.	.	1058	49	1129	2	.	228
PDE2A	5138	hgsc.bcm.edu	37	11	72292016	72292016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDE2A	NM_002599	exon24	c.G2047A	p.D683N	.	.	71	4	89	0	.	156
PDS5A	23244	hgsc.bcm.edu;bcgsc.ca	37	4	39910134	39910134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001100399	exon11	c.C1114A	p.P372T	.	.	68	4	92	0	.	.
PDXDC1	23042	bcgsc.ca	37	16	15112711	15112711	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDXDC1	NM_015027	exon12	c.T978C	p.G326G	.	.	119	5	294	1	.	91
PDZD2	23037	bcgsc.ca	37	5	32088364	32088364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDZD2	NM_178140	exon19	c.A4810G	p.T1604A	.	.	69	5	81	0	.	563
PDZRN3	23024	bcgsc.ca	37	3	73433320	73433320	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDZRN3	NM_015009	exon10	c.A2397G	p.E799E	.	.	80	4	105	1	.	232
PDZRN3	23024	hgsc.bcm.edu	37	3	73433257	73433257	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDZRN3	NM_015009	exon10	c.T2460C	p.P820P	.	.	73	4	82	0	.	232
PDZRN4	29951	hgsc.bcm.edu	37	12	41946515	41946515	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDZRN4	NM_001164595	exon6	c.C1261A	p.R421R	.	.	96	4	122	0	.	296
PET112	5188	hgsc.bcm.edu	37	4	152679945	152679945	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PET112	NM_004564	exon2	c.A306G	p.A102A	.	.	89	4	100	0	.	90
PHF21A	51317	hgsc.bcm.edu;bcgsc.ca	37	11	46098351	46098351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF21A	NM_016621	exon5	c.A107G	p.Q36R	.	.	89	4	105	0	.	92
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45291935	45291935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF21B	NM_138415	exon6	c.T860C	p.L287P	.	.	98	67	139	0	.	93
PHF2	5253	hgsc.bcm.edu	37	9	96428080	96428080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF2	NM_005392	exon15	c.G2050T	p.G684C	.	.	106	5	98	0	.	91
PHKB	5257	hgsc.bcm.edu;bcgsc.ca	37	16	47545621	47545621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHKB	NM_000293	exon5	c.T451C	p.S151P	.	.	86	4	138	0	.	154
PI4KA	5297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21167781	21167781	+	Silent	SNP	G	G	A	rs146943439	byfrequency	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PI4KA	NM_058004	exon8	c.C870T	p.P290P	.	.	98	11	135	1	G|0.997;A|0.003	454
PIEZO1	9780	hgsc.bcm.edu	37	16	88792799	88792799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001142864	exon27	c.G3861T	p.W1287C	.	.	96	4	155	0	.	.
PIGM	93183	hgsc.bcm.edu	37	1	160000609	160000609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIGM	NM_145167	exon1	c.C921A	p.F307L	.	.	94	4	75	0	.	228
PIK3CD	5293	hgsc.bcm.edu;bcgsc.ca	37	1	9782115	9782115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIK3CD	NM_005026	exon17	c.A2138G	p.E713G	.	.	82	4	147	0	.	1311
PIK3CD	5293	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	9781914	9781914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIK3CD	NM_005026	exon16	c.A2051G	p.K684R	.	.	28	4	33	0	.	1311
PILRA	29992	hgsc.bcm.edu	37	7	99971978	99971978	+	Silent	SNP	C	C	A	rs141936238	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PILRA	NM_013439	exon2	c.C376A	p.R126R	.	.	89	4	98	0	C|1.000;G|0.000	91
PIP4K2B	8396	hgsc.bcm.edu	37	17	36935671	36935671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIP4K2B	NM_003559	exon5	c.C619T	p.H207Y	.	.	98	4	74	0	.	266
PJA1	64219	hgsc.bcm.edu	37	X	68381880	68381880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PJA1	NM_145119	exon2	c.A1202G	p.E401G	.	.	93	4	74	0	.	130
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81185495	81185495	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PKD1L2	.	.	.	.	.	.	90	72	194	0	.	92
PKP4	8502	hgsc.bcm.edu	37	2	159519916	159519916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PKP4	NM_001005476	exon15	c.T2536C	p.S846P	.	.	118	5	126	0	.	97
PLAGL1	5325	hgsc.bcm.edu;bcgsc.ca	37	6	144263706	144263706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLAGL1	NM_001080953	exon7	c.A247G	p.T83A	.	.	55	4	42	0	.	91
PLAU	5328	hgsc.bcm.edu	37	10	75676286	75676286	+	Missense_Mutation	SNP	G	G	A	rs148650588		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLAU	NM_002658	exon11	c.G1259A	p.R420H	.	.	94	4	95	0	G|1.000;A|0.000	118
PLCG2	5336	hgsc.bcm.edu	37	16	81972412	81972412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLCG2	NM_002661	exon29	c.G3205A	p.G1069S	.	.	99	4	152	0	.	892
PLCXD2	257068	hgsc.bcm.edu;bcgsc.ca	37	3	111427204	111427204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLCXD2	NM_001185106	exon2	c.C595A	p.L199M	.	.	118	5	141	0	.	227
PLEKHA7	144100	hgsc.bcm.edu	37	11	16838667	16838667	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHA7	NM_175058	exon11	c.C1546A	p.R516R	.	.	100	4	77	0	.	227
PLEKHG2	64857	hgsc.bcm.edu	37	19	39907025	39907025	+	Missense_Mutation	SNP	G	G	T	rs138517241		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHG2	NM_022835	exon5	c.G517T	p.G173W	.	.	100	4	124	0	G|1.000;T|0.000	274
PLEKHG2	64857	hgsc.bcm.edu	37	19	39907052	39907052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHG2	NM_022835	exon5	c.A544G	p.R182G	.	.	97	4	83	0	.	274
PLEKHG3	26030	bcgsc.ca	37	14	65194397	65194397	+	Silent	SNP	G	G	T	rs148339393	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHG3	NM_015549	exon2	c.G48T	p.P16P	.	.	170	6	241	0	G|1.000;A|0.000	91
PLEKHH3	79990	hgsc.bcm.edu	37	17	40823547	40823547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHH3	NM_024927	exon8	c.T1106C	p.L369P	.	.	77	4	74	0	.	158
PLIN1	5346	hgsc.bcm.edu	37	15	90210232	90210232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLIN1	NM_001145311	exon8	c.T1144C	p.S382P	.	.	87	4	120	0	.	91
PLSCR1	5359	hgsc.bcm.edu	37	3	146246440	146246440	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLSCR1	NM_021105	exon4	c.T273C	p.P91P	.	.	99	4	141	0	.	92
PLXNA2	5362	hgsc.bcm.edu	37	1	208202173	208202173	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLXNA2	NM_025179	exon31	c.5438+2T>C	.	.	.	84	4	81	0	.	92
PMS1	5378	hgsc.bcm.edu	37	2	190656664	190656664	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PMS1	NM_001128143	exon2	c.A129G	p.K43K	.	.	95	4	109	0	.	1396
PNPLA1	285848	hgsc.bcm.edu	37	6	36270243	36270243	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PNPLA1	NM_001145717	exon6	c.C1381T	p.Q461X	.	.	79	4	57	0	.	137
POLE	5426	bcgsc.ca	37	12	133253952	133253952	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLE	NM_006231	exon8	c.A798G	p.R266R	.	.	183	6	202	0	.	233
POLG	5428	hgsc.bcm.edu;bcgsc.ca	37	15	89876764	89876764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLG	NM_002693	exon2	c.G222T	p.L74F	.	.	70	4	85	0	.	228
POLR3B	55703	hgsc.bcm.edu;bcgsc.ca	37	12	106824192	106824192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLR3B	NM_018082	exon14	c.C1405T	p.R469C	.	.	91	4	115	0	.	91
POTEC	388468	broad.mit.edu	37	18	14542693	14542693	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POTEC	NM_001137671	exon1	c.G453A	p.K151K	.	.	1088	13	1185	1	.	3
PPFIA3	8541	hgsc.bcm.edu	37	19	49640052	49640052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PPFIA3	NM_003660	exon15	c.G1737T	p.E579D	.	.	109	5	75	0	.	226
PPM1E	22843	hgsc.bcm.edu	37	17	57058078	57058078	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PPM1E	NM_014906	exon7	c.T1954C	p.L652L	.	.	100	4	92	0	.	291
PPP1R1B	84152	bcgsc.ca	37	17	37785796	37785796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PPP1R1B	NM_032192	exon3	c.A146G	p.E49G	.	.	51	4	49	0	.	658
PPP1R36	145376	hgsc.bcm.edu	37	14	65054066	65054066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_172365	exon10	c.A866G	p.K289R	.	.	78	4	92	0	.	.
PPP1R9A	55607	hgsc.bcm.edu	37	7	94540701	94540701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PPP1R9A	NM_017650	exon2	c.G1276T	p.D426Y	.	.	92	4	127	0	.	208
PRDX5	25824	bcgsc.ca	37	11	64087297	64087297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRDX5	NM_181651	exon2	c.T263C	p.V88A	.	.	199	6	213	2	.	153
PRICKLE3	4007	bcgsc.ca	37	X	49032156	49032156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRICKLE3	NM_006150	exon9	c.C1714A	p.P572T	.	.	161	6	156	0	.	193
PROX1	5629	hgsc.bcm.edu;bcgsc.ca	37	1	214170676	214170676	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PROX1	NM_001270616	exon2	c.G798T	p.S266S	.	.	88	4	69	0	.	654
PRPH	5630	hgsc.bcm.edu	37	12	49690226	49690226	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRPH	NM_006262	exon3	c.T618C	p.D206D	.	.	77	4	74	0	.	90
PRR22	163154	hgsc.bcm.edu	37	19	5783322	5783322	+	Silent	SNP	C	C	A	rs188791439	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRR22	NM_001134316	exon3	c.G936T	p.P312P	.	.	85	4	66	0	C|0.997;T|0.003	90
PRR23A	729627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	138725110	138725110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001134659	exon1	c.A1G	p.M1V	.	.	12	8	19	0	.	.
PRRT4	401399	broad.mit.edu	37	7	127990957	127990957	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001174164	exon6	c.C2653A	p.R885R	.	.	168	5	267	0	.	.
PRSS12	8492	hgsc.bcm.edu;bcgsc.ca	37	4	119203115	119203115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRSS12	NM_003619	exon13	c.G2604T	p.W868C	.	.	64	4	81	0	.	91
PRSS35	167681	hgsc.bcm.edu	37	6	84234261	84234261	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRSS35	NM_153362	exon2	c.T1101C	p.I367I	.	.	87	4	59	0	.	91
PTCH2	8643	hgsc.bcm.edu	37	1	45292710	45292710	+	Silent	SNP	G	G	T	rs148265788	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PTCH2,upper_back,malignant_melanoma,-1	PTCH2	NM_001166292	exon17	c.C2559A	p.P853P	.	.	73	3	103	0	G|1.000;A|0.000	851
PTGER2	5732	hgsc.bcm.edu	37	14	52781586	52781586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTGER2	NM_000956	exon1	c.G320T	p.R107L	.	.	91	4	128	0	.	658
PTGR2	145482	hgsc.bcm.edu;bcgsc.ca	37	14	74350824	74350824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTGR2	NM_152444	exon10	c.A1000G	p.T334A	.	.	91	4	106	0	.	90
PTPN4	5775	hgsc.bcm.edu	37	2	120720202	120720202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTPN4	NM_002830	exon24	c.A2291G	p.H764R	.	.	116	5	95	0	.	228
PTPN9	5780	hgsc.bcm.edu;bcgsc.ca	37	15	75761250	75761250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTPN9	NM_002833	exon13	c.T1642C	p.S548P	.	.	67	4	100	0	.	226
PTS	5805	hgsc.bcm.edu	37	11	112097190	112097190	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTS	NM_000317	exon1	c.T24C	p.R8R	.	.	76	4	77	0	.	90
PUS7	54517	bcgsc.ca	37	7	105098271	105098271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PUS7	NM_019042	exon16	c.A1952G	p.N651S	.	.	203	7	264	1	.	90
PXDNL	137902	bcgsc.ca	37	8	52370069	52370069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PXDNL	NM_144651	exon9	c.C971A	p.S324Y	.	.	143	5	84	0	.	70
PYCR1	5831	bcgsc.ca	37	17	79893365	79893365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PYCR1	NM_153824	exon3	c.A166G	p.N56D	.	.	155	6	117	1	.	68
PYCR1	5831	hgsc.bcm.edu	37	17	79892336	79892336	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PYCR1	NM_153824	exon6	c.A663G	p.E221E	.	.	58	4	59	0	.	68
RAB27A	5873	hgsc.bcm.edu	37	15	55520885	55520885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RAB27A	NM_183235	exon5	c.T265C	p.F89L	.	.	94	4	127	0	.	228
RAB9B	51209	bcgsc.ca	37	X	103080440	103080440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RAB9B	NM_016370	exon3	c.G275T	p.R92L	.	.	74	4	58	2	.	659
RAPGEF6	51735	bcgsc.ca	37	5	130797645	130797645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RAPGEF6	NM_001164387	exon20	c.T2632C	p.F878L	.	.	226	6	146	0	.	661
RARS	5917	hgsc.bcm.edu	37	5	167945066	167945066	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RARS	NM_002887	exon14	c.T1872C	p.T624T	.	.	84	5	69	0	.	93
RASGRF1	5923	hgsc.bcm.edu;bcgsc.ca	37	15	79254552	79254552	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RASGRF1	NM_002891	exon28	c.T3756C	p.S1252S	.	.	54	4	92	0	.	662
RASSF9	9182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	86198974	86198974	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RASSF9	NM_005447	exon2	c.C814T	p.R272X	.	.	109	35	141	0	.	23
RBM20	282996	bcgsc.ca	37	10	112583335	112583335	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001134363	exon12	c.A3414G	p.E1138E	.	.	212	7	138	0	.	.
RBM47	54502	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40434757	40434757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RBM47	NM_001098634	exon6	c.G1453C	p.D485H	.	.	168	129	247	1	.	25
RBM47	54502	hgsc.bcm.edu	37	4	40439926	40439926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RBM47	NM_001098634	exon4	c.A985G	p.K329E	.	.	98	4	135	0	.	25
RBM5	10181	hgsc.bcm.edu	37	3	50154760	50154760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RBM5	NM_005778	exon24	c.G2270T	p.R757L	.	.	114	4	127	0	.	278
RBMS3	27303	bcgsc.ca	37	3	29977670	29977670	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RBMS3	NM_001177712	exon12	c.T1072C	p.L358L	.	.	242	6	283	1	.	90
RCN1	5954	hgsc.bcm.edu;bcgsc.ca	37	11	32125951	32125951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RCN1	NM_002901	exon6	c.A929G	p.N310S	.	.	115	5	139	0	.	153
RDH8	50700	hgsc.bcm.edu;bcgsc.ca	37	19	10131464	10131464	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RDH8	NM_015725	exon4	c.G582A	p.L194L	.	.	80	4	101	0	.	94
RGPD4	285190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108487607	108487607	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RGPD4	NM_182588	exon20	c.A3147G	p.E1049E	.	.	124	47	137	0	.	2
RHBDL3	162494	broad.mit.edu;bcgsc.ca	37	17	30611689	30611689	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RHBDL3	NM_138328	exon3	c.G147A	p.G49G	.	.	126	5	119	0	.	91
RHO	6010	hgsc.bcm.edu	37	3	129249881	129249881	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RHO	NM_000539	exon2	c.G524A	p.W175X	.	.	66	4	48	0	.	90
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33498926	33498926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RHPN2	NM_033103	exon7	c.G754T	p.A252S	.	.	159	60	118	0	.	516
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38950476	38950476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RICTOR	NM_152756	exon31	c.A3474T	p.Q1158H	.	.	427	190	309	1	.	849
RIF1	55183	bcgsc.ca	37	2	152324617	152324617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RIF1	NM_018151	exon31	c.C6704A	p.P2235H	.	.	211	6	288	1	.	300
RLBP1	6017	hgsc.bcm.edu	37	15	89753607	89753607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RLBP1	NM_000326	exon9	c.A863G	p.D288G	.	.	94	4	70	0	.	90
RLTPR	146206	hgsc.bcm.edu	37	16	67685847	67685847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RLTPR	NM_001013838	exon26	c.G2612T	p.G871V	.	.	62	4	78	0	.	67
RNASE4	6038	hgsc.bcm.edu;bcgsc.ca	37	14	21167714	21167714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNASE4	NM_002937	exon2	c.A184G	p.M62V	.	.	55	4	89	0	.	514
RNF123	63891	hgsc.bcm.edu;bcgsc.ca	37	3	49735904	49735904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF123	NM_022064	exon8	c.C515T	p.A172V	.	.	90	5	115	0	.	584
RNF128	79589	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	105970375	105970375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF128	NM_194463	exon1	c.G232T	p.E78X	.	.	208	75	192	0	.	227
RNF145	153830	bcgsc.ca	37	5	158630640	158630640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF145	NM_001199380	exon2	c.A76G	p.K26E	.	.	44	6	25	1	.	525
RNF168	165918	broad.mit.edu	37	3	196214332	196214332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF168	NM_152617	exon3	c.A496G	p.R166G	.	.	1118	9	1133	1	.	90
RNF220	55182	hgsc.bcm.edu	37	1	45092001	45092001	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF220	NM_018150	exon5	c.A837G	p.E279E	.	.	64	4	109	0	.	228
RNF5P1	286140	bcgsc.ca	37	8	38458615	38458615	+	RNA	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	.	.	.	.	.	.	84	5	68	0	.	.
RNF8	9025	bcgsc.ca	37	6	37336292	37336292	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF8	NM_003958	exon3	c.T273C	p.R91R	.	.	251	6	166	0	.	227
ROR2	4920	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	94495611	94495611	+	Missense_Mutation	SNP	G	G	A	rs148340413	byfrequency	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ROR2	NM_004560	exon6	c.C730T	p.R244W	.	.	227	107	159	1	G|1.000;A|0.000	1471
RP1L1	94137	hgsc.bcm.edu	37	8	10469337	10469337	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RP1L1	NM_178857	exon4	c.T2271C	p.A757A	.	.	125	5	105	0	.	139
RPGR	6103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38145015	38145015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RPGR	NM_001034853	exon15	c.G3237T	p.R1079S	.	.	745	365	834	1	.	131
RPS6KA3	6197	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20181109	20181109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RPS6KA3	NM_004586	exon19	c.G1814A	p.G605D	.	.	366	24	411	1	.	1504
RRBP1	6238	broad.mit.edu	37	20	17640796	17640796	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RRBP1	NM_004587	exon2	c.T357C	p.A119A	.	.	295	5	221	3	.	92
RRP12	23223	hgsc.bcm.edu	37	10	99150246	99150246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RRP12	NM_015179	exon6	c.G687T	p.W229C	.	.	57	4	52	0	.	92
RSL1D1	26156	hgsc.bcm.edu;bcgsc.ca	37	16	11935611	11935611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RSL1D1	NM_015659	exon7	c.T796C	p.S266P	.	.	122	5	135	0	.	90
RSPH6A	81492	hgsc.bcm.edu	37	19	46307718	46307718	+	Missense_Mutation	SNP	C	C	A	rs139803225	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RSPH6A	NM_030785	exon3	c.G1445T	p.R482L	.	.	113	6	113	0	C|1.000;G|0.000	91
RTL1	388015	hgsc.bcm.edu	37	14	101351053	101351053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RTL1	NM_001134888	exon1	c.T73C	p.S25P	.	.	68	4	76	0	.	46
RUNX3	864	bcgsc.ca	37	1	25291031	25291031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RUNX3	NM_001031680	exon1	c.C32A	p.P11Q	.	.	56	5	116	1	.	414
RXFP2	122042	bcgsc.ca	37	13	32363297	32363297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RXFP2	NM_130806	exon14	c.G1112T	p.R371L	.	.	100	4	100	0	.	90
RYR3	6263	hgsc.bcm.edu	37	15	33855061	33855061	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RYR3	NM_001243996	exon11	c.C996A	p.S332S	.	.	100	4	127	0	.	520
S100P	6286	bcgsc.ca	37	4	6698678	6698678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	S100P	NM_005980	exon2	c.A197G	p.D66G	.	.	151	6	265	1	.	514
SBNO1	55206	hgsc.bcm.edu;bcgsc.ca	37	12	123798234	123798234	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SBNO1	NM_001167856	exon23	c.A3153G	p.K1051K	.	.	68	4	66	0	.	292
SBNO2	22904	bcgsc.ca	37	19	1127736	1127736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_014963	exon5	c.A308G	p.N103S	.	.	206	6	185	0	.	.
SCAPER	49855	bcgsc.ca	37	15	77057690	77057690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCAPER	NM_020843	exon12	c.C1601A	p.P534H	.	.	157	6	223	0	.	137
SCD	6319	hgsc.bcm.edu	37	10	102112216	102112216	+	Missense_Mutation	SNP	G	G	T	rs145182376	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCD	NM_005063	exon3	c.G404T	p.R135L	.	.	97	4	68	0	G|1.000;A|0.000	90
SCEL	8796	hgsc.bcm.edu;bcgsc.ca	37	13	78130761	78130761	+	Missense_Mutation	SNP	G	G	T	rs200836262	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCEL	NM_003843	exon3	c.G74T	p.R25L	.	.	92	4	84	0	.	95
SCN10A	6336	bcgsc.ca	37	3	38768107	38768107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCN10A	NM_006514	exon16	c.C3077A	p.P1026H	.	.	120	5	110	1	.	99
SCN1A	6323	hgsc.bcm.edu	37	2	166900257	166900257	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCN1A	NM_001165963	exon11	c.T1965C	p.G655G	.	.	115	5	142	0	.	147
SCP2D1	140856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18794517	18794517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_178483	exon1	c.G58T	p.G20C	.	.	196	90	166	1	.	.
SCYL1	57410	hgsc.bcm.edu	37	11	65299085	65299085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCYL1	NM_020680	exon8	c.G1047T	p.K349N	.	.	89	4	69	0	.	333
SEC24B	10427	hgsc.bcm.edu	37	4	110384380	110384380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24B	NM_006323	exon2	c.T457C	p.S153P	.	.	103	5	140	0	.	137
SEC24B	10427	hgsc.bcm.edu;bcgsc.ca	37	4	110453794	110453794	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24B	NM_006323	exon21	c.3391-1G>T	.	.	.	49	4	85	0	.	137
SEC24D	9871	hgsc.bcm.edu;bcgsc.ca	37	4	119666159	119666159	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24D	NM_014822	exon14	c.A1764G	p.E588E	.	.	170	7	252	0	.	90
SEC31A	22872	bcgsc.ca	37	4	83740305	83740305	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC31A	NM_001077207	exon27	c.C3585A	p.T1195T	.	.	193	6	323	1	.	268
SEC31B	25956	bcgsc.ca	37	10	102258978	102258978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC31B	NM_015490	exon13	c.A1523G	p.E508G	.	.	156	5	97	0	.	91
SEL1L3	23231	hgsc.bcm.edu;bcgsc.ca	37	4	25849271	25849271	+	Silent	SNP	G	G	T	rs200467510	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_015187	exon2	c.C378A	p.P126P	.	.	97	4	172	0	G|0.996;A|0.004	.
SEMA3C	10512	hgsc.bcm.edu	37	7	80433423	80433423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEMA3C	NM_006379	exon8	c.C800A	p.P267H	.	.	120	5	154	0	.	515
SEMA4C	54910	hgsc.bcm.edu	37	2	97529483	97529483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEMA4C	NM_017789	exon12	c.T1379C	p.L460P	.	.	72	4	92	0	.	92
SEMA6A	57556	hgsc.bcm.edu;bcgsc.ca	37	5	115823894	115823894	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEMA6A	NM_020796	exon10	c.656-2A>G	.	.	.	139	6	126	0	.	92
SEPT3	55964	hgsc.bcm.edu;bcgsc.ca	37	22	42377812	42377812	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEPT3	NM_019106	exon2	c.C174A	p.T58T	.	.	72	6	83	0	.	68
SERPINE2	5270	hgsc.bcm.edu;bcgsc.ca	37	2	224856708	224856708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SERPINE2	NM_001136530	exon4	c.A533G	p.D178G	.	.	59	4	55	0	.	290
SERPINI1	5274	ucsc.edu	37	3	167506899	167506899	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SERPINI1	.	.	.	.	.	.	43	4	58	0	.	226
SETD3	84193	hgsc.bcm.edu;bcgsc.ca	37	14	99927679	99927679	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SETD3	NM_032233	exon5	c.197-2A>G	.	.	.	49	4	73	0	.	514
SEZ6	124925	hgsc.bcm.edu	37	17	27286199	27286199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEZ6	NM_001098635	exon10	c.G1951A	p.G651R	.	.	97	4	76	0	.	90
SEZ6L	23544	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	26690288	26690288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEZ6L	NM_021115	exon3	c.A866C	p.E289A	.	.	105	8	168	1	.	95
SFI1	9814	hgsc.bcm.edu;bcgsc.ca	37	22	31969140	31969140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SFI1	NM_001007467	exon9	c.A862G	p.R288G	.	.	53	4	50	0	.	90
SGPL1	8879	bcgsc.ca	37	10	72633282	72633282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SGPL1	NM_003901	exon12	c.G1234T	p.G412C	.	.	138	5	90	0	.	226
SH2B1	25970	hgsc.bcm.edu	37	16	28884047	28884047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SH2B1	NM_001145797	exon8	c.G1918T	p.G640W	.	.	96	4	181	0	.	92
SHANK2	22941	hgsc.bcm.edu;bcgsc.ca	37	11	70336441	70336441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHANK2	NM_133266	exon8	c.A727G	p.S243G	.	.	102	5	99	0	.	94
SHC2	25759	hgsc.bcm.edu	37	19	422413	422413	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHC2	NM_012435	exon11	c.G1353T	p.A451A	.	.	98	4	88	0	.	392
SHC4	399694	bcgsc.ca	37	15	49127098	49127098	+	Silent	SNP	C	C	A	rs141070519	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHC4	NM_203349	exon11	c.G1605T	p.A535A	.	.	132	5	167	1	C|0.999;T|0.001	95
SHROOM1	134549	bcgsc.ca;mdanderson.org	37	5	132161730	132161730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHROOM1	NM_133456	exon1	c.T103C	p.S35P	.	.	54	5	37	1	.	91
SHROOM3	57619	hgsc.bcm.edu;bcgsc.ca	37	4	77660862	77660862	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHROOM3	NM_020859	exon5	c.T1536C	p.A512A	.	.	54	4	93	0	.	93
SIGIRR	59307	hgsc.bcm.edu;bcgsc.ca	37	11	407512	407512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIGIRR	NM_021805	exon6	c.T538C	p.F180L	.	.	167	7	132	0	.	90
SIGLEC1	6614	hgsc.bcm.edu	37	20	3670895	3670895	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIGLEC1	NM_023068	exon18	c.C4608A	p.P1536P	.	.	47	4	46	0	.	167
SIK2	23235	hgsc.bcm.edu	37	11	111594228	111594228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIK2	NM_015191	exon15	c.A2156G	p.Q719R	.	.	88	4	87	0	.	783
SIM1	6492	hgsc.bcm.edu	37	6	100898180	100898180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIM1	NM_005068	exon3	c.T311C	p.I104T	.	.	90	4	57	0	.	94
SIRT6	51548	hgsc.bcm.edu;bcgsc.ca	37	19	4179153	4179153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIRT6	NM_016539	exon3	c.T325C	p.F109L	.	.	93	5	67	0	.	227
SKP2	6502	broad.mit.edu	37	5	36171710	36171710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SKP2	NM_032637	exon7	c.A776G	p.D259G	.	.	739	8	642	0	.	1084
SLC10A2	6555	hgsc.bcm.edu	37	13	103703608	103703608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC10A2	NM_000452	exon4	c.A760G	p.R254G	.	.	54	4	46	0	.	94
SLC12A6	9990	hgsc.bcm.edu;bcgsc.ca	37	15	34547524	34547524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC12A6	NM_133647	exon7	c.T815C	p.F272S	.	.	69	5	91	0	.	517
SLC12A7	10723	hgsc.bcm.edu	37	5	1088466	1088466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC12A7	NM_006598	exon5	c.A499G	p.T167A	.	.	122	5	100	0	.	138
SLC13A5	284111	hgsc.bcm.edu	37	17	6597477	6597477	+	Silent	SNP	G	G	T	rs139660928	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC13A5	NM_001143838	exon8	c.C1095A	p.T365T	.	.	80	4	65	0	G|1.000;C|0.000	90
SLC14A1	6563	hgsc.bcm.edu;bcgsc.ca	37	18	43310402	43310402	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC14A1	NM_001146037	exon2	c.C285A	p.T95T	.	.	97	5	99	0	.	515
SLC15A2	6565	hgsc.bcm.edu;bcgsc.ca	37	3	121647383	121647383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC15A2	NM_021082	exon15	c.A1322G	p.E441G	.	.	100	6	126	0	.	91
SLC16A4	9122	hgsc.bcm.edu;bcgsc.ca	37	1	110918150	110918150	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC16A4	NM_004696	exon8	c.A1266G	p.T422T	.	.	85	5	169	0	.	93
SLC17A9	63910	bcgsc.ca	37	20	61594022	61594022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC17A9	NM_022082	exon5	c.G544T	p.G182C	.	.	261	9	223	1	.	92
SLC24A3	57419	broad.mit.edu	37	20	19701759	19701759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC24A3	NM_020689	exon17	c.A1910G	p.N637S	.	.	404	10	353	2	.	91
SLC25A13	10165	hgsc.bcm.edu	37	7	95820553	95820553	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC25A13	NM_001160210	exon7	c.G622T	p.G208X	.	.	74	4	91	0	.	515
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62373570	62373570	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC2A4RG	NM_020062	exon5	c.C667T	p.L223L	.	.	137	62	126	0	.	90
SLC30A5	64924	broad.mit.edu	37	5	68411804	68411804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC30A5	NM_022902	exon9	c.T835C	p.F279L	.	.	1134	9	939	0	.	226
SLC34A2	10568	hgsc.bcm.edu;bcgsc.ca	37	4	25664190	25664190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC34A2	NM_001177998	exon2	c.G68A	p.G23D	.	.	90	4	124	0	.	95
SLC35E1	79939	bcgsc.ca	37	19	16666053	16666053	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC35E1	NM_024881	exon5	c.G912T	p.T304T	.	.	192	7	193	0	.	91
SLC37A1	54020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43979198	43979198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC37A1	NM_018964	exon12	c.C980A	p.P327Q	.	.	51	5	37	0	.	90
SLC37A3	84255	hgsc.bcm.edu;bcgsc.ca	37	7	140069457	140069457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC37A3	NM_207113	exon4	c.C224A	p.P75H	.	.	47	4	44	0	.	93
SLC39A9	55334	hgsc.bcm.edu	37	14	69922540	69922540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC39A9	NM_001252150	exon6	c.C650T	p.A217V	.	.	92	4	179	0	.	90
SLC40A1	30061	hgsc.bcm.edu	37	2	190426883	190426883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC40A1	NM_014585	exon8	c.G1437T	p.L479F	.	.	97	4	66	0	.	91
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142228278	142228278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC45A4	NM_001080431	exon4	c.G1308T	p.E436D	.	.	85	33	71	0	.	70
SLC46A3	283537	hgsc.bcm.edu	37	13	29287117	29287117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC46A3	NM_181785	exon3	c.G760T	p.G254C	.	.	95	4	89	0	.	69
SLC5A2	6524	hgsc.bcm.edu;bcgsc.ca	37	16	31499986	31499986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC5A2	NM_003041	exon10	c.G1173T	p.M391I	.	.	56	4	113	0	.	91
SLC5A5	6528	hgsc.bcm.edu	37	19	17988895	17988895	+	Missense_Mutation	SNP	C	C	A	rs149570759	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SLC5A5,arm,malignant_melanoma,0	SLC5A5	NM_000453	exon7	c.C962A	p.P321Q	.	.	35	3	36	0	.	93
SLC7A5	8140	hgsc.bcm.edu	37	16	87871523	87871523	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC7A5	NM_003486	exon7	c.A1068G	p.E356E	.	.	90	4	130	0	.	90
SLC7A7	9056	bcgsc.ca	37	14	23243674	23243674	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC7A7	NM_001126105	exon9	c.C1134A	p.I378I	.	.	139	5	203	0	.	154
SLC9A1	6548	bcgsc.ca	37	1	27436103	27436103	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC9A1	NM_003047	exon3	c.C979A	p.R327R	.	.	162	6	242	0	.	91
SLC9B2	133308	bcgsc.ca	37	4	103947560	103947560	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_178833	exon12	c.A1581G	p.E527E	.	.	144	5	203	0	.	.
SLIT2	9353	hgsc.bcm.edu	37	4	20618726	20618726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLIT2	NM_004787	exon35	c.G4041T	p.Q1347H	.	.	79	4	100	0	.	521
SLITRK1	114798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84453981	84453981	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLITRK1	NM_052910	exon1	c.C1662G	p.S554R	.	.	108	66	107	1	.	94
SLITRK6	84189	bcgsc.ca	37	13	86370570	86370570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLITRK6	NM_032229	exon2	c.T74C	p.L25P	.	.	257	7	226	0	.	137
SMAD2	4087	bcgsc.ca	37	18	45368253	45368253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMAD2	NM_005901	exon11	c.A1349G	p.D450G	.	.	178	6	158	1	.	1333
SMARCC2	6601	hgsc.bcm.edu	37	12	56580987	56580987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMARCC2	NM_139067	exon2	c.C215A	p.P72Q	.	.	71	4	89	0	.	229
SMEK1	55671	hgsc.bcm.edu;bcgsc.ca	37	14	91937188	91937188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMEK1	NM_032560	exon11	c.G1614T	p.L538F	.	.	93	4	142	0	.	226
SMG1	23049	hgsc.bcm.edu	37	16	18863750	18863750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMG1	NM_015092	exon32	c.G4803T	p.L1601F	.	.	88	4	109	0	.	1160
SMPD2	6610	hgsc.bcm.edu;bcgsc.ca	37	6	109764241	109764241	+	Missense_Mutation	SNP	A	A	G	rs145532915	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMPD2	NM_003080	exon8	c.A686G	p.K229R	.	.	124	6	105	0	A|0.999;T|0.001	90
SNAI1	6615	hgsc.bcm.edu;bcgsc.ca	37	20	48600493	48600493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAI1	NM_005985	exon2	c.T215C	p.I72T	.	.	86	5	72	0	.	227
SNAI2	6591	bcgsc.ca	37	8	49832916	49832916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAI2	NM_003068	exon2	c.C164A	p.P55H	.	.	460	9	435	1	.	188
SNAP29	9342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21235375	21235375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAP29	NM_004782	exon3	c.C473T	p.A158V	.	.	153	107	209	1	.	278
SNAP47	116841	hgsc.bcm.edu	37	1	227947130	227947130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAP47	NM_053052	exon3	c.T1067C	p.L356P	.	.	64	4	22	0	.	91
SNCAIP	9627	bcgsc.ca	37	5	121739550	121739550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNCAIP	NM_001242935	exon3	c.A74G	p.K25R	.	.	182	6	152	0	.	92
SNED1	25992	bcgsc.ca	37	2	241969713	241969713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNED1	NM_001080437	exon2	c.G226T	p.G76W	.	.	170	5	175	0	.	72
SNX15	29907	hgsc.bcm.edu;bcgsc.ca	37	11	64802421	64802421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNX15	NM_147777	exon4	c.A359G	p.K120R	.	.	105	5	89	0	.	227
SOX3	6658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	139587141	139587141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SOX3	NM_005634	exon1	c.C85A	p.P29T	.	.	125	31	126	0	.	1083
SPACA1	81833	hgsc.bcm.edu;bcgsc.ca	37	6	88768538	88768538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPACA1	NM_030960	exon4	c.C472A	p.Q158K	.	.	89	5	91	0	.	90
SPAG17	200162	hgsc.bcm.edu;bcgsc.ca	37	1	118550817	118550817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPAG17	NM_206996	exon31	c.G4437T	p.E1479D	.	.	77	4	78	0	.	158
SPATA19	219938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133714476	133714476	+	Missense_Mutation	SNP	C	C	G	rs138068697	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPATA19	NM_174927	exon3	c.G195C	p.Q65H	.	.	178	110	225	0	C|1.000;T|0.000	90
SPATA31A1	647060	hgsc.bcm.edu	37	9	39361559	39361559	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001085452	exon4	c.3797delC	p.A1266fs	.	.	38	14	36	0	.	.
SPATA31A1	647060	hgsc.bcm.edu	37	9	39890810	39890810	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001085452	exon4	c.3797delC	p.A1266fs	.	.	65	21	20	0	.	.
SPATA31E1	286234	hgsc.bcm.edu	37	9	90500432	90500432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_178828	exon4	c.C1030T	p.P344S	.	.	94	4	76	0	.	.
SPATA7	55812	hgsc.bcm.edu;bcgsc.ca	37	14	88892683	88892683	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPATA7	NM_018418	exon6	c.T480C	p.S160S	.	.	76	4	92	0	.	91
SPECC1	92521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	20163561	20163561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPECC1	NM_001033553	exon12	c.G2894A	p.R965H	.	.	136	60	118	0	.	639
SPEN	23013	bcgsc.ca	37	1	16255600	16255600	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPEN	NM_015001	exon11	c.A2865G	p.E955E	.	.	121	5	160	1	.	298
SPESP1	246777	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	69238897	69238897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPESP1	NM_145658	exon2	c.A1024G	p.R342G	.	.	38	4	41	0	.	90
SPG21	51324	hgsc.bcm.edu	37	15	65261628	65261628	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPG21	NM_001127889	exon7	c.T633C	p.P211P	.	.	71	4	85	0	.	90
SPG7	6687	hgsc.bcm.edu;bcgsc.ca	37	16	89616941	89616941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPG7	NM_003119	exon13	c.A1703G	p.Q568R	.	.	78	4	100	0	.	226
SPHKAP	80309	hgsc.bcm.edu	37	2	228881550	228881550	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPHKAP	NM_030623	exon7	c.T4020C	p.S1340S	.	.	99	4	111	0	.	167
SPTB	6710	broad.mit.edu;bcgsc.ca	37	14	65239468	65239468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTB	NM_001024858	exon25	c.G5383A	p.A1795T	.	.	76	66	152	3	.	100
SPTB	6710	hgsc.bcm.edu;bcgsc.ca	37	14	65252316	65252316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTB	NM_001024858	exon17	c.A3794G	p.E1265G	.	.	62	4	56	0	.	100
SPTBN2	6712	hgsc.bcm.edu;bcgsc.ca	37	11	66468660	66468660	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTBN2	NM_006946	exon16	c.C2910A	p.T970T	.	.	119	6	112	0	.	155
SRFBP1	153443	hgsc.bcm.edu;bcgsc.ca	37	5	121309963	121309963	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRFBP1	NM_152546	exon2	c.C109A	p.R37R	.	.	115	5	135	0	.	90
SRRM2	23524	hgsc.bcm.edu	37	16	2818026	2818026	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRRM2	NM_016333	exon11	c.T7497C	p.P2499P	.	.	80	4	121	0	.	93
SRRM5	100170229	bcgsc.ca	37	19	44117106	44117106	+	Missense_Mutation	SNP	C	C	A	rs78739853	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145641	exon1	c.C833A	p.P278Q	.	.	156	5	169	0	C|0.969;T|0.031	.
SRSF2	6427	hgsc.bcm.edu;bcgsc.ca	37	17	74732955	74732955	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRSF2	NM_001195427	exon1	c.G288A	p.P96P	.	.	38	4	33	0	.	226
SSBP3	23648	hgsc.bcm.edu	37	1	54717508	54717508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SSBP3	NM_145716	exon8	c.A533G	p.Q178R	.	.	111	5	233	0	.	90
SSTR2	6752	hgsc.bcm.edu;bcgsc.ca	37	17	71166524	71166524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SSTR2	NM_001050	exon2	c.A1066G	p.T356A	.	.	86	5	73	0	.	522
SSTR3	6753	hgsc.bcm.edu	37	22	37602782	37602782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SSTR3	NM_001051	exon2	c.A1061G	p.E354G	.	.	44	4	41	0	.	522
ST7	7982	hgsc.bcm.edu	37	7	116759658	116759658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ST7	NM_018412	exon3	c.T278C	p.I93T	.	.	100	4	133	0	.	515
STAT5A	6776	hgsc.bcm.edu;bcgsc.ca	37	17	40460208	40460208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	STAT5A	NM_003152	exon17	c.T1919C	p.L640P	.	.	149	6	144	0	.	846
STK33	65975	broad.mit.edu	37	11	8435222	8435222	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	STK33	NM_030906	exon13	c.G1164T	p.S388S	.	.	477	7	417	1	.	337
STOML2	30968	bcgsc.ca	37	9	35100610	35100610	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	STOML2	NM_013442	exon9	c.C918A	p.T306T	.	.	182	6	156	0	.	90
STX12	23673	hgsc.bcm.edu	37	1	28128323	28128323	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	STX12	NM_177424	exon4	c.T423C	p.L141L	.	.	99	4	135	0	.	153
SUCO	51430	hgsc.bcm.edu	37	1	172525148	172525148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_014283	exon4	c.C428A	p.P143Q	.	.	98	4	71	0	.	.
SUMF1	285362	hgsc.bcm.edu;bcgsc.ca	37	3	4458810	4458810	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SUMF1	NM_001164674	exon6	c.765+2T>C	.	.	.	77	4	83	0	.	91
SUN2	25777	hgsc.bcm.edu	37	22	39147022	39147022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SUN2	NM_001199580	exon5	c.G305T	p.R102L	.	.	53	4	52	0	.	154
SV2C	22987	bcgsc.ca	37	5	75597367	75597367	+	Missense_Mutation	SNP	G	G	T	rs202233851	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SV2C	NM_014979	exon12	c.G1997T	p.R666L	.	.	143	5	113	0	.	91
SVEP1	79987	hgsc.bcm.edu;bcgsc.ca	37	9	113169106	113169106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SVEP1	NM_153366	exon38	c.G8774A	p.G2925D	.	.	81	4	70	0	.	75
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33579155	33579155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYT10	NM_198992	exon2	c.G427A	p.E143K	.	.	621	234	675	2	.	92
SYT6	148281	hgsc.bcm.edu	37	1	114682411	114682411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYT6	NM_205848	exon2	c.G83A	p.G28D	.	.	63	4	91	0	.	94
SYTL1	84958	hgsc.bcm.edu	37	1	27677307	27677307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYTL1	NM_001193308	exon11	c.T1028C	p.L343P	.	.	100	4	137	0	.	91
SYTL5	94122	bcgsc.ca	37	X	37984619	37984619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYTL5	NM_001163334	exon16	c.C1976A	p.P659H	.	.	209	6	245	1	.	131
TACC1	6867	broad.mit.edu	37	8	38646247	38646247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC1	NM_006283	exon2	c.A187G	p.T63A	.	.	247	8	222	0	.	187
TACC2	10579	hgsc.bcm.edu	37	10	123845759	123845759	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC2	NM_206862	exon4	c.A3744G	p.A1248A	.	.	84	4	64	0	.	296
TACC2	10579	hgsc.bcm.edu	37	10	123996925	123996925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC2	NM_206862	exon17	c.C8143A	p.P2715T	.	.	87	4	52	0	.	296
TACC2	10579	hgsc.bcm.edu;bcgsc.ca	37	10	123848021	123848021	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC2	NM_206862	exon5	c.T5488C	p.L1830L	.	.	143	6	100	0	.	296
TACC3	10460	hgsc.bcm.edu	37	4	1725265	1725265	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC3	NM_006342	exon2	c.A117G	p.S39S	.	.	99	4	155	0	.	91
TAF2	6873	hgsc.bcm.edu	37	8	120793297	120793297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TAF2	NM_003184	exon17	c.A2249G	p.Q750R	.	.	119	5	123	0	.	274
TANC2	26115	bcgsc.ca	37	17	61417464	61417464	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TANC2	NM_025185	exon10	c.G1356T	p.V452V	.	.	101	4	117	0	.	24
TARBP2	6895	hgsc.bcm.edu;bcgsc.ca	37	12	53899518	53899518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TARBP2	NM_134323	exon8	c.T827C	p.I276T	.	.	61	4	46	0	.	226
TAS2R42	353164	hgsc.bcm.edu	37	12	11338858	11338858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TAS2R42	NM_181429	exon1	c.A686G	p.H229R	.	.	87	4	81	0	.	69
TAX1BP1	8887	bcgsc.ca	37	7	27833974	27833974	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TAX1BP1	NM_006024	exon11	c.G1443T	p.T481T	.	.	147	5	229	0	.	153
TBCD	6904	hgsc.bcm.edu	37	17	80897247	80897247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBCD	NM_005993	exon37	c.G3374A	p.R1125Q	.	.	70	4	75	0	.	22
TBCK	93627	hgsc.bcm.edu;bcgsc.ca	37	4	107154107	107154107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBCK	NM_001163436	exon17	c.G1627A	p.V543M	.	.	87	4	195	0	.	336
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	.	.	73	4	58	0	.	91
TBX3	6926	hgsc.bcm.edu	37	12	115114249	115114249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBX3	NM_016569	exon6	c.G968T	p.R323M	.	.	108	5	126	0	.	93
TC2N	123036	hgsc.bcm.edu	37	14	92258866	92258866	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TC2N	NM_001128596	exon9	c.A892T	p.K298X	.	.	81	4	108	0	.	69
TCF20	6942	hgsc.bcm.edu	37	22	42607070	42607070	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCF20	NM_181492	exon1	c.G4242T	p.S1414S	.	.	82	4	112	0	.	95
TCF7L2	6934	bcgsc.ca	37	10	114911540	114911540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCF7L2	NM_001146283	exon10	c.C1130A	p.P377H	.	.	138	5	95	0	.	586
TCHHL1	126637	broad.mit.edu	37	1	152057905	152057905	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCHHL1	NM_001008536	exon3	c.C2253A	p.P751P	.	.	935	10	607	1	.	92
TCP10	6953	hgsc.bcm.edu	37	6	167789461	167789461	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCP10	NM_004610	exon6	c.A681G	p.R227R	.	.	120	5	113	0	.	89
TCP11L2	255394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	106740125	106740125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCP11L2	NM_152772	exon10	c.G1377A	p.M459I	.	.	108	42	127	0	.	93
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	78437179	78437179	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001098816	exon23	c.G3495T	p.A1165A	.	.	372	138	431	0	.	.
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50740456	50740456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFAP2D	NM_172238	exon8	c.C1238T	p.T413I	.	.	120	43	85	0	.	159
TFIP11	24144	bcgsc.ca	37	22	26902423	26902423	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFIP11	NM_001008697	exon7	c.T366C	p.G122G	.	.	102	5	126	1	.	90
TFR2	7036	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	100226878	100226878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFR2	NM_003227	exon10	c.A1388G	p.N463S	.	.	30	4	62	0	.	92
TGFB2	7042	hgsc.bcm.edu	37	1	218520057	218520057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TGFB2	NM_003238	exon1	c.T14C	p.V5A	.	.	78	4	47	0	.	710
TGM2	7052	hgsc.bcm.edu	37	20	36760872	36760872	+	Missense_Mutation	SNP	T	T	C	rs148045565		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TGM2	NM_004613	exon11	c.A1646G	p.E549G	.	.	96	4	70	0	T|0.999;C|0.000	155
TH	7054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2190970	2190970	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TH	NM_199292	exon3	c.G315A	p.E105E	.	.	155	86	197	0	.	90
THBS1	7057	hgsc.bcm.edu;bcgsc.ca	37	15	39886569	39886569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	THBS1	NM_003246	exon21	c.G3433T	p.G1145C	.	.	98	4	106	0	.	653
THOC3	84321	broad.mit.edu	37	5	175395076	175395076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	THOC3	NM_032361	exon1	c.A136G	p.S46G	.	.	278	7	224	0	.	68
THOC6	79228	hgsc.bcm.edu	37	16	3076554	3076554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	THOC6	NM_001142350	exon7	c.T449C	p.L150S	.	.	88	4	95	0	.	116
TK2	7084	hgsc.bcm.edu;bcgsc.ca	37	16	66575828	66575828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TK2	NM_001172645	exon3	c.G185T	p.G62V	.	.	53	4	84	0	.	115
TMC1	117531	bcgsc.ca	37	9	75406810	75406810	+	Missense_Mutation	SNP	G	G	A	rs184603559		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMC1	NM_138691	exon16	c.G1233A	p.M411I	.	.	225	6	202	0	G|0.999;A|0.001	91
TMC4	147798	hgsc.bcm.edu	37	19	54664261	54664261	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMC4	NM_001145303	exon14	c.G2013T	p.V671V	.	.	100	4	88	0	.	91
TMC5	79838	bcgsc.ca	37	16	19505663	19505663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMC5	NM_001105248	exon20	c.T2906C	p.L969P	.	.	68	4	95	1	.	91
TMEM104	54868	hgsc.bcm.edu	37	17	72815910	72815910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM104	NM_017728	exon9	c.G658T	p.G220X	.	.	148	6	163	0	.	90
TMEM151A	256472	hgsc.bcm.edu	37	11	66062755	66062755	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM151A	NM_153266	exon2	c.C1038A	p.L346L	.	.	65	4	76	0	.	90
TMEM163	81615	hgsc.bcm.edu	37	2	135308182	135308182	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM163	NM_030923	exon4	c.C417T	p.Y139Y	.	.	100	4	119	0	.	90
TMEM175	84286	hgsc.bcm.edu	37	4	951958	951958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM175	NM_032326	exon11	c.G1189A	p.A397T	.	.	91	4	112	0	.	90
TMEM194A	23306	hgsc.bcm.edu	37	12	57472459	57472459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM194A	NM_015257	exon1	c.G70A	p.G24S	.	.	103	4	124	0	.	68
TMEM63A	9725	hgsc.bcm.edu	37	1	226059703	226059703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM63A	NM_014698	exon5	c.A317G	p.D106G	.	.	92	4	64	0	.	91
TNC	3371	hgsc.bcm.edu	37	9	117853209	117853209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TNC	NM_002160	exon2	c.G89T	p.R30L	.	.	94	4	71	0	.	517
TNKS	8658	hgsc.bcm.edu	37	8	9623750	9623750	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TNKS	NM_003747	exon25	c.T3555C	p.G1185G	.	.	71	4	61	0	.	660
TNRC18	84629	hgsc.bcm.edu	37	7	5427683	5427683	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TNRC18	NM_001080495	exon5	c.A1772T	p.Y591F	.	.	55	4	70	0	.	46
TNRC6C	57690	bcgsc.ca	37	17	76075481	76075481	+	Silent	SNP	G	G	T	rs143705154	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TNRC6C	NM_018996	exon11	c.G3216T	p.P1072P	.	.	103	4	77	0	G|0.999;A|0.000	24
TNS1	7145	hgsc.bcm.edu	37	2	218712394	218712394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TNS1	NM_022648	exon17	c.C2471A	p.P824Q	.	.	92	4	103	0	.	156
TOMM22	56993	hgsc.bcm.edu	37	22	39078943	39078943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TOMM22	NM_020243	exon3	c.T296C	p.V99A	.	.	95	4	130	0	.	90
TOP2A	7153	hgsc.bcm.edu;bcgsc.ca	37	17	38561112	38561112	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TOP2A	NM_001067	exon17	c.T1977C	p.D659D	.	.	68	4	68	0	.	655
TOPAZ1	375337	bcgsc.ca	37	3	44364720	44364720	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145030	exon18	c.T4608C	p.F1536F	.	.	177	6	224	0	.	.
TOR4A	54863	hgsc.bcm.edu	37	9	140173890	140173890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_017723	exon2	c.T749C	p.V250A	.	.	62	4	50	0	.	.
TP53	7157	hgsc.bcm.edu	37	17	7579549	7579549	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TP53,bladder,carcinoma,-1	TP53	NM_000546	exon4	c.C138A	p.S46S	.	.	72	3	54	0	.	70225
TP53I13	90313	hgsc.bcm.edu	37	17	27896100	27896100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TP53I13	NM_138349	exon2	c.C137T	p.P46L	.	.	80	4	27	0	.	90
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1440156	1440156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TPO	NM_175719	exon5	c.G482T	p.R161I	.	.	105	58	119	0	.	332
TRAF6	7189	bcgsc.ca	37	11	36520181	36520181	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRAF6	NM_004620	exon3	c.T306C	p.G102G	.	.	95	5	75	0	.	660
TRAK1	22906	bcgsc.ca	37	3	42264663	42264663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRAK1	NM_001042646	exon16	c.T2296C	p.S766P	.	.	98	6	93	4	.	91
TRAPPC11	60684	bcgsc.ca	37	4	184615787	184615787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_021942	exon23	c.A2539G	p.T847A	.	.	543	11	796	1	.	.
TRAPPC13	80006	bcgsc.ca	37	5	64931134	64931134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001243737	exon2	c.G53T	p.R18L	.	.	176	5	150	0	.	.
TRAPPC9	83696	hgsc.bcm.edu	37	8	141449296	141449296	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRAPPC9	NM_031466	exon3	c.A879G	p.R293R	.	.	93	4	57	0	.	228
TRIB3	57761	hgsc.bcm.edu	37	20	376998	376998	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIB3	NM_021158	exon4	c.G741T	p.L247L	.	.	96	4	98	0	.	359
TRIM10	10107	hgsc.bcm.edu	37	6	30121749	30121749	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIM10	NM_006778	exon7	c.C1443A	p.S481S	.	.	95	4	96	0	.	226
TRIM10	10107	hgsc.bcm.edu	37	6	30121896	30121896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIM10	NM_006778	exon7	c.G1296T	p.R432S	.	.	93	4	72	0	.	226
TRIM45	80263	hgsc.bcm.edu	37	1	117661332	117661332	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIM45	NM_001145635	exon2	c.C546A	p.Y182X	.	.	87	4	137	0	.	226
TRIM69	140691	hgsc.bcm.edu	37	15	45051022	45051022	+	Silent	SNP	G	G	T	rs148920822	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIM69	NM_182985	exon4	c.G783T	p.T261T	.	.	86	4	118	0	G|0.999;A|0.001	90
TRIM77	390231	bcgsc.ca	37	11	89447378	89447378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001146162	exon3	c.A526G	p.S176G	.	.	153	5	161	0	.	.
TROAP	10024	hgsc.bcm.edu;bcgsc.ca	37	12	49725141	49725141	+	Missense_Mutation	SNP	G	G	T	rs200487146	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TROAP	NM_005480	exon14	c.G2243T	p.R748L	.	.	123	5	97	0	G|0.999;A|0.001	91
TRPC7	57113	bcgsc.ca	37	5	135587455	135587455	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_020389	exon6	c.A1461G	p.T487T	.	.	176	8	167	0	.	.
TRPM3	80036	hgsc.bcm.edu;bcgsc.ca	37	9	73235023	73235023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRPM3	NM_001007471	exon15	c.G2062T	p.D688Y	.	.	82	4	73	0	.	521
TRRAP	8295	hgsc.bcm.edu;bcgsc.ca	37	7	98545947	98545947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRRAP	NM_001244580	exon33	c.G4631T	p.R1544L	.	.	99	4	112	0	.	923
TSEN54	283989	hgsc.bcm.edu	37	17	73518036	73518036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TSEN54	NM_207346	exon8	c.G874T	p.G292C	.	.	72	4	82	0	.	91
TSPAN5	10098	hgsc.bcm.edu	37	4	99408000	99408000	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TSPAN5	NM_005723	exon3	c.C168A	p.L56L	.	.	92	4	122	0	.	90
TSPEAR	54084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45953608	45953608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TSPEAR	NM_144991	exon3	c.G502A	p.V168I	.	.	188	74	124	0	.	244
TSPO2	222642	hgsc.bcm.edu	37	6	41011697	41011697	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TSPO2	NM_001010873	exon4	c.C334T	p.L112L	.	.	68	4	89	0	.	90
TTC29	83894	bcgsc.ca	37	4	147824736	147824736	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC29	NM_031956	exon6	c.C546A	p.A182A	.	.	137	5	209	1	.	90
TTC39A	22996	hgsc.bcm.edu;bcgsc.ca	37	1	51767296	51767296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39A	NM_001144832	exon12	c.A1013G	p.K338R	.	.	44	4	100	0	.	23
TTC39C	125488	bcgsc.ca	37	18	21694594	21694594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39C	NM_001135993	exon7	c.T1061C	p.V354A	.	.	170	5	180	0	.	91
TTC39C	125488	hgsc.bcm.edu;bcgsc.ca	37	18	21660556	21660556	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39C	NM_001135993	exon5	c.C468T	p.I156I	.	.	83	4	75	0	.	91
TTC7B	145567	hgsc.bcm.edu	37	14	91142948	91142948	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC7B	NM_001010854	exon9	c.C1071A	p.I357I	.	.	75	4	129	0	.	92
TTF1	7270	hgsc.bcm.edu	37	9	135277238	135277238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTF1	NM_007344	exon2	c.C971A	p.P324Q	.	.	98	4	69	0	.	94
TTN	7273	bcgsc.ca	37	2	179621352	179621352	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTN	NM_001267550	exon46	c.T10851C	p.S3617S	.	.	137	6	127	1	.	636
TTN	7273	hgsc.bcm.edu	37	2	179399454	179399454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTN	NM_001267550	exon358	c.C101888T	p.A33963V	.	.	99	4	153	0	.	636
TTN	7273	hgsc.bcm.edu	37	2	179476169	179476169	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTN	NM_001267550	exon269	c.A50787G	p.R16929R	.	.	122	5	121	0	.	636
TTN	7273	hgsc.bcm.edu	37	2	179647564	179647564	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTN	NM_001267550	exon18	c.C3069A	p.T1023T	.	.	97	4	120	0	.	636
TUBB	203068	bcgsc.ca	37	6	30690786	30690786	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TUBB	NM_178014	exon3	c.A258G	p.R86R	.	.	182	5	151	2	.	91
TUBGCP5	114791	hgsc.bcm.edu	37	15	22846911	22846911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TUBGCP5	NM_052903	exon8	c.G786T	p.R262S	.	.	99	4	127	0	.	91
TULP2	7288	hgsc.bcm.edu	37	19	49401098	49401098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TULP2	NM_003323	exon2	c.A28G	p.R10G	.	.	83	4	63	0	.	93
TWSG1	57045	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	9337333	9337333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TWSG1	NM_020648	exon2	c.A106G	p.S36G	.	.	44	4	35	0	.	92
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10476357	10476357	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TYK2	NM_003331	exon7	c.C847T	p.L283L	.	.	93	45	93	0	.	1009
UBA6	55236	hgsc.bcm.edu;bcgsc.ca	37	4	68534270	68534270	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBA6	NM_018227	exon9	c.G792T	p.T264T	.	.	114	5	153	0	.	90
UBC	7316	ucsc.edu	37	12	125396398	125396398	+	Silent	SNP	A	A	G	rs8023		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBC	NM_021009	exon2	c.T1920C	p.D640D	.	.	212	33	318	2	A|0.833;G|0.167	46
UBE4B	10277	hgsc.bcm.edu	37	1	10190866	10190866	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBE4B	NM_001105562	exon14	c.G1906T	p.G636X	.	.	77	4	116	0	.	229
UBP1	7342	hgsc.bcm.edu;bcgsc.ca	37	3	33444345	33444345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBP1	NM_014517	exon9	c.C979A	p.P327T	.	.	173	7	184	0	.	537
UBR2	23304	hgsc.bcm.edu	37	6	42573470	42573470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBR2	NM_001184801	exon6	c.A674G	p.D225G	.	.	98	4	94	0	.	94
UGT2A1	10941	hgsc.bcm.edu	37	4	70504773	70504773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UGT2A1	NM_001252274	exon3	c.C1189A	p.P397T	.	.	100	4	195	0	.	92
UHRF1BP1L	23074	hgsc.bcm.edu	37	12	100441351	100441351	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UHRF1BP1L	NM_015054	exon19	c.T4038C	p.H1346H	.	.	87	4	87	0	.	24
ULK4	54986	hgsc.bcm.edu;bcgsc.ca	37	3	41860960	41860960	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ULK4	NM_017886	exon19	c.T1803C	p.V601V	.	.	60	4	67	0	.	297
UNC79	57578	bcgsc.ca	37	14	93954056	93954056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_020818	exon5	c.G136T	p.A46S	.	.	104	4	152	1	.	.
UNC80	285175	hgsc.bcm.edu	37	2	210806147	210806147	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UNC80	NM_032504	exon43	c.C6651A	p.T2217T	.	.	94	4	90	0	.	90
UNK	85451	hgsc.bcm.edu	37	17	73811297	73811297	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UNK	NM_001080419	exon7	c.T924C	p.C308C	.	.	97	4	116	0	.	68
UPF1	5976	hgsc.bcm.edu;bcgsc.ca	37	19	18963017	18963017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UPF1	NM_002911	exon6	c.G884T	p.R295L	.	.	117	5	121	0	.	91
USH2A	7399	bcgsc.ca	37	1	215955473	215955473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USH2A	NM_206933	exon54	c.T10651C	p.F3551L	.	.	222	6	152	0	.	115
USHBP1	83878	ucsc.edu	37	19	17374810	17374810	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USHBP1	NM_031941	exon4	c.203+1G>A	.	.	.	27	4	18	0	.	91
USP32	84669	bcgsc.ca	37	17	58275802	58275802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP32	NM_032582	exon27	c.A3253G	p.R1085G	.	.	231	6	189	0	.	704
USP33	23032	bcgsc.ca	37	1	78181484	78181484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP33	NM_015017	exon19	c.T2081C	p.V694A	.	.	98	4	121	2	.	659
USP36	57602	hgsc.bcm.edu;bcgsc.ca	37	17	76810529	76810529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP36	NM_025090	exon11	c.A1129G	p.S377G	.	.	96	4	83	0	.	659
USP48	84196	hgsc.bcm.edu;bcgsc.ca	37	1	22084236	22084236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP48	NM_001032730	exon2	c.G175T	p.G59C	.	.	78	5	104	0	.	659
UTP20	27340	hgsc.bcm.edu	37	12	101736358	101736358	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UTP20	NM_014503	exon33	c.G4236T	p.T1412T	.	.	92	4	97	0	.	155
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82849183	82849183	+	Missense_Mutation	SNP	A	A	G	rs13184139	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VCAN	NM_004385	exon11	c.A9494G	p.D3165G	.	.	59	4	52	0	A|1.000;|0.000	238
VCX	26609	bcgsc.ca	37	X	7811759	7811759	+	Missense_Mutation	SNP	C	C	G	rs201088529		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VCX	NM_013452	exon3	c.C323G	p.A108G	.	.	77	6	134	0	.	22
VGLL4	9686	bcgsc.ca	37	3	11600257	11600257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VGLL4	NM_001128219	exon5	c.A664G	p.S222G	.	.	141	5	136	2	.	91
VPRBP	9730	hgsc.bcm.edu;bcgsc.ca	37	3	51456168	51456168	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPRBP	NM_014703	exon15	c.T3240C	p.C1080C	.	.	90	4	94	0	.	92
VPS13B	157680	hgsc.bcm.edu;bcgsc.ca	37	8	100654256	100654256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPS13B	NM_017890	exon34	c.A5513G	p.D1838G	.	.	64	4	51	0	.	301
VPS13C	54832	bcgsc.ca	37	15	62259585	62259585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPS13C	NM_020821	exon29	c.G2973T	p.L991F	.	.	180	5	251	0	.	92
VPS13D	55187	hgsc.bcm.edu	37	1	12389898	12389898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPS13D	NM_015378	exon37	c.T8210C	p.L2737P	.	.	68	4	116	0	.	95
VWA5B1	127731	hgsc.bcm.edu	37	1	20656794	20656794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001039500	exon10	c.T1376C	p.L459P	.	.	81	4	149	0	.	.
WDHD1	11169	bcgsc.ca	37	14	55429722	55429722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WDHD1	NM_007086	exon19	c.C2479A	p.Q827K	.	.	79	4	130	1	.	91
WDR13	64743	hgsc.bcm.edu	37	X	48458757	48458757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WDR13	NM_017883	exon5	c.T574C	p.S192P	.	.	61	4	69	0	.	132
WDR38	401551	hgsc.bcm.edu	37	9	127619818	127619818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WDR38	NM_001276374	exon9	c.C857A	p.P286Q	.	.	108	5	125	0	.	22
WDR4	10785	hgsc.bcm.edu	37	21	44274711	44274711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WDR4	NM_018669	exon8	c.T752C	p.F251S	.	.	55	4	51	0	.	91
WEE2	494551	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	141414139	141414139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WEE2	NM_001105558	exon2	c.T473C	p.F158S	.	.	43	4	83	0	.	305
WHSC1L1	54904	hgsc.bcm.edu	37	8	38173035	38173035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WHSC1L1	NM_023034	exon11	c.C2014A	p.P672T	.	.	95	4	83	0	.	658
WLS	79971	hgsc.bcm.edu;bcgsc.ca	37	1	68610266	68610266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WLS	NM_024911	exon10	c.T1348C	p.F450L	.	.	62	4	111	0	.	90
WNK3	65267	bcgsc.ca	37	X	54275996	54275996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WNK3	NM_001002838	exon17	c.C2785A	p.R929S	.	.	305	8	297	1	.	441
WNK3	65267	hgsc.bcm.edu	37	X	54335737	54335737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WNK3	NM_001002838	exon4	c.G722T	p.R241L	.	.	60	4	78	0	.	441
WWP1	11059	hgsc.bcm.edu	37	8	87479044	87479044	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WWP1	NM_007013	exon25	c.A2691G	p.P897P	.	.	83	4	90	0	.	659
XAB2	56949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7691045	7691045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XAB2	NM_020196	exon5	c.A634G	p.K212E	.	.	101	41	90	0	.	272
XIRP1	165904	hgsc.bcm.edu	37	3	39229651	39229651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XIRP1	NM_001198621	exon2	c.C1286A	p.P429H	.	.	86	4	68	0	.	158
XPO5	57510	hgsc.bcm.edu;bcgsc.ca	37	6	43515423	43515423	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XPO5	NM_020750	exon19	c.T2082C	p.A694A	.	.	103	5	85	0	.	271
YAE1D1	57002	hgsc.bcm.edu	37	7	39610225	39610225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_020192	exon2	c.A250G	p.S84G	.	.	75	4	102	0	.	.
YKT6	10652	hgsc.bcm.edu	37	7	44250697	44250697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	YKT6	NM_006555	exon6	c.A535G	p.T179A	.	.	99	4	146	0	.	90
YPEL4	219539	hgsc.bcm.edu;bcgsc.ca	37	11	57413467	57413467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	YPEL4	NM_145008	exon5	c.A371G	p.N124S	.	.	75	4	64	0	.	90
YTHDF2	51441	bcgsc.ca	37	1	29068969	29068969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	YTHDF2	NM_016258	exon4	c.T187C	p.S63P	.	.	177	6	298	1	.	92
ZBTB14	7541	hgsc.bcm.edu	37	18	5291320	5291320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001243702	exon4	c.A887G	p.E296G	.	.	95	4	76	0	.	.
ZC3H12C	85463	hgsc.bcm.edu;bcgsc.ca	37	11	110035709	110035709	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3H12C	NM_033390	exon6	c.C1899T	p.S633S	.	.	55	4	74	0	.	68
ZC3H15	55854	hgsc.bcm.edu	37	2	187366137	187366137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3H15	NM_018471	exon4	c.G427A	p.E143K	.	.	125	5	78	0	.	91
ZC3HAV1L	92092	hgsc.bcm.edu;bcgsc.ca	37	7	138719329	138719329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3HAV1L	NM_080660	exon2	c.G461T	p.R154L	.	.	80	4	93	0	.	90
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	16	72992020	72992020	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFHX3	NM_006885	exon2	c.G2025A	p.K675K	.	.	39	4	41	0	.	72
ZFHX4	79776	hgsc.bcm.edu	37	8	77618142	77618142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFHX4	NM_024721	exon2	c.G1819T	p.G607C	.	.	78	4	51	0	.	98
ZFP3	124961	hgsc.bcm.edu	37	17	4995559	4995559	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFP3	NM_153018	exon2	c.G760T	p.E254X	.	.	69	4	55	0	.	90
ZFP82	284406	bcgsc.ca	37	19	36884872	36884872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFP82	NM_133466	exon5	c.A370G	p.T124A	.	.	216	8	167	0	.	91
ZFP82	284406	hgsc.bcm.edu	37	19	36884281	36884281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFP82	NM_133466	exon5	c.T961C	p.C321R	.	.	117	5	92	0	.	91
ZFYVE21	79038	bcgsc.ca	37	14	104195485	104195485	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFYVE21	NM_024071	exon5	c.C492A	p.T164T	.	.	101	4	106	0	.	90
ZMYM2	7750	hgsc.bcm.edu	37	13	20659971	20659971	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZMYM2	NM_001190964	exon26	c.T3951C	p.N1317N	.	.	85	4	108	0	.	685
ZMYM3	9203	bcgsc.ca	37	X	70469408	70469408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZMYM3	NM_005096	exon7	c.T1373C	p.I458T	.	.	279	7	352	2	.	131
ZMYM3	9203	hgsc.bcm.edu;bcgsc.ca	37	X	70465850	70465850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZMYM3	NM_005096	exon16	c.T2671C	p.S891P	.	.	89	4	96	0	.	131
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133727625	133727625	+	Silent	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF10	NM_015394	exon3	c.C45G	p.T15T	.	.	208	84	206	0	.	154
ZNF136	7695	bcgsc.ca	37	19	12296605	12296605	+	Silent	SNP	G	G	T	rs117086249	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF136	NM_003437	exon2	c.G9T	p.S3S	.	.	270	7	255	1	G|0.997;A|0.003	92
ZNF20	7568	hgsc.bcm.edu;bcgsc.ca	37	19	12243683	12243683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF20	NM_021143	exon4	c.A1318G	p.I440V	.	.	89	4	75	0	.	22
ZNF221	7638	hgsc.bcm.edu	37	19	44471269	44471269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF221	NM_013359	exon6	c.T1615C	p.C539R	.	.	90	4	87	0	.	91
ZNF223	7766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	44570978	44570978	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF223	NM_013361	exon5	c.A997T	p.K333X	.	.	135	52	103	0	.	91
ZNF225	7768	hgsc.bcm.edu;bcgsc.ca	37	19	44635250	44635250	+	Silent	SNP	C	C	A	rs201221735	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_013362	exon5	c.C483A	p.S161S	.	.	121	5	103	0	C|0.999;T|0.000	.
ZNF263	10127	hgsc.bcm.edu	37	16	3334126	3334126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF263	NM_005741	exon1	c.A308G	p.E103G	.	.	125	5	134	0	.	94
ZNF311	282890	hgsc.bcm.edu;bcgsc.ca	37	6	28967374	28967374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF311	NM_001010877	exon5	c.A200G	p.E67G	.	.	91	4	84	0	.	22
ZNF333	84449	hgsc.bcm.edu;bcgsc.ca	37	19	14815924	14815924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF333	NM_032433	exon6	c.C365T	p.P122L	.	.	72	4	90	0	.	92
ZNF35	7584	hgsc.bcm.edu	37	3	44700749	44700749	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF35	NM_003420	exon4	c.A894G	p.K298K	.	.	62	4	63	0	.	90
ZNF423	23090	hgsc.bcm.edu	37	16	49670350	49670350	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF423	NM_015069	exon4	c.C2713A	p.R905R	.	.	81	4	95	0	.	228
ZNF426	79088	bcgsc.ca	37	19	9646890	9646890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF426	NM_024106	exon3	c.T19C	p.S7P	.	.	135	5	139	0	.	91
ZNF45	7596	bcgsc.ca	37	19	44423078	44423078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF45	NM_003425	exon9	c.A179G	p.E60G	.	.	194	6	172	0	.	91
ZNF462	58499	hgsc.bcm.edu	37	9	109689751	109689751	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF462	NM_021224	exon3	c.T3558C	p.P1186P	.	.	85	4	55	0	.	95
ZNF521	25925	bcgsc.ca	37	18	22804796	22804796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF521	NM_015461	exon4	c.T3086C	p.V1029A	.	.	62	4	68	0	.	275
ZNF532	55205	hgsc.bcm.edu	37	18	56586800	56586800	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF532	NM_018181	exon4	c.G1281T	p.A427A	.	.	97	4	103	0	.	154
ZNF559	84527	bcgsc.ca	37	19	9453173	9453173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF559	NM_001202406	exon6	c.G1238A	p.G413E	.	.	70	4	59	0	.	91
ZNF565	147929	bcgsc.ca	37	19	36685187	36685187	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF565	NM_001042474	exon4	c.A180G	p.Q60Q	.	.	143	5	185	0	.	92
ZNF592	9640	hgsc.bcm.edu	37	15	85327163	85327163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF592	NM_014630	exon4	c.C1257A	p.S419R	.	.	100	4	80	0	.	96
ZNF610	162963	hgsc.bcm.edu;bcgsc.ca	37	19	52856964	52856964	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZNF610,NS,carcinoma,0	ZNF610	NM_001161427	exon4	c.C93T	p.I31I	.	.	73	4	66	0	.	93
ZNF629	23361	hgsc.bcm.edu	37	16	30795164	30795164	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001080417	exon3	c.G485A	p.W162X	.	.	99	4	153	0	.	.
ZNF646	9726	hgsc.bcm.edu;bcgsc.ca	37	16	31088245	31088245	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF646	NM_014699	exon2	c.C600T	p.P200P	.	.	71	6	91	0	.	153
ZNF655	79027	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99170201	99170201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF655	NM_001085368	exon4	c.A575G	p.D192G	.	.	44	5	60	0	.	91
ZNF691	51058	hgsc.bcm.edu	37	1	43317025	43317025	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF691	NM_001242739	exon4	c.G489T	p.R163R	.	.	48	4	74	0	.	24
ZNF710	374655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90610374	90610374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF710	NM_198526	exon2	c.A5G	p.E2G	.	.	86	42	104	0	.	90
ZNF732	654254	bcgsc.ca	37	4	289864	289864	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF732	NM_001137608	exon1	c.G81A	p.L27L	.	.	207	14	343	8	.	22
ZNF732	654254	bcgsc.ca	37	4	289888	289888	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF732	NM_001137608	exon1	c.C57T	p.C19C	.	.	180	14	276	5	.	22
ZNF732	654254	bcgsc.ca	37	4	289928	289928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF732	NM_001137608	exon1	c.G17A	p.R6K	.	.	142	14	203	5	.	22
ZNF75D	7626	hgsc.bcm.edu	37	X	134426381	134426381	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF75D	NM_007131	exon3	c.G430T	p.G144X	.	.	82	4	90	0	.	130
ZNF827	152485	hgsc.bcm.edu	37	4	146744660	146744660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF827	NM_178835	exon8	c.A2297G	p.D766G	.	.	83	4	99	0	.	22
ZNF845	91664	hgsc.bcm.edu	37	19	53856000	53856000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_138374	exon4	c.A2072G	p.Y691C	.	.	94	4	77	0	.	.
ZSCAN1	284312	bcgsc.ca	37	19	58565326	58565326	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZSCAN1	NM_182572	exon6	c.A1134G	p.R378R	.	.	116	6	68	1	.	92
ZSWIM5	57643	hgsc.bcm.edu	37	1	45525908	45525908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZSWIM5	NM_020883	exon3	c.C964A	p.P322T	.	.	85	4	123	0	.	22
ZSWIM6	57688	hgsc.bcm.edu	37	5	60628341	60628341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_020928	exon1	c.C242T	p.A81V	.	.	95	4	74	0	.	.
ZYG11B	79699	hgsc.bcm.edu	37	1	53237069	53237069	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZYG11B	NM_024646	exon3	c.G574C	p.D192H	.	.	60	4	66	0	.	94
ZSWIM6	57688	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	60628300	60628301	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	.	.	.	p.P68S	.	.	.	.	.	.	.	
