Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AANAT	15	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74465363	74465363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	AANAT	NM_001166579	exon6	c.T407A	p.V136E	.	.	50	19	133	0	.	90
ACAD8	27034	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134131672	134131672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ACAD8	NM_014384	exon9	c.T980C	p.V327A	.	.	29	11	145	0	.	90
ACAD9	28976	ucsc.edu	37	3	128623265	128623265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ACAD9	NM_014049	exon11	c.A1066G	p.M356V	.	.	41	5	84	0	.	92
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	44072129	44072129	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ACCSL	NM_001031854	exon3	c.G592T	p.E198X	.	.	63	27	217	0	.	95
ACTR10	55860	ucsc.edu	37	14	58675801	58675801	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ACTR10	NM_018477	exon4	c.T318C	p.T106T	.	.	32	4	62	0	.	90
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74284003	74284003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ALB	NM_000477	exon12	c.A1627G	p.K543E	.	.	21	8	80	1	.	96
ALPP	250	hgsc.bcm.edu	37	2	233245689	233245690	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ALPP	NM_001632	exon9	c.1140_1141insT	p.H380fs	.	.	67	14	261	0	.	91
ARHGEF39	84904	ucsc.edu	37	9	35664034	35664034	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_032818	exon4	c.G444A	p.L148L	.	.	37	4	126	0	.	.
ARID2	196528	ucsc.edu	37	12	46246431	46246431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ARID2	NM_152641	exon15	c.A4525G	p.T1509A	.	.	35	4	160	1	.	100
ASIC4	55515	broad.mit.edu;ucsc.edu	37	2	220379297	220379297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_182847	exon1	c.G232A	p.G78S	.	.	48	4	182	0	.	.
ASS1	445	ucsc.edu;bcgsc.ca	37	9	133333853	133333853	+	Missense_Mutation	SNP	C	C	A	rs147910468	byfrequency;alternate_allele	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ASS1	NM_054012	exon4	c.C240A	p.S80R	.	.	31	4	94	0	C|1.000;T|0.000	91
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193174846	193174846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ATP13A4	NM_032279	exon16	c.C1858A	p.L620M	.	.	62	22	168	0	.	92
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99021404	99021404	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_001198879	exon8	c.T2061C	p.F687F	.	.	66	25	132	0	.	.
AXDND1	126859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179339142	179339142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	AXDND1	NM_144696	exon4	c.G303T	p.W101C	.	.	69	50	129	0	.	93
AZU1	566	broad.mit.edu	37	19	830863	830863	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	AZU1	NM_001700	exon4	c.G516T	p.V172V	.	.	15	5	54	0	.	91
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187447378	187447378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BCL6	NM_001134738	exon4	c.A815T	p.D272V	.	.	37	10	121	0	.	848
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187447392	187447392	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BCL6	NM_001134738	exon4	c.A801G	p.E267E	.	.	41	11	121	0	.	848
BRF2	55290	ucsc.edu	37	8	37702177	37702177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BRF2	NM_018310	exon4	c.A1091G	p.K364R	.	.	32	4	159	1	.	90
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1466531	1466531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BRSK2	NM_001256630	exon10	c.A958G	p.K320E	.	.	33	19	137	0	.	333
C4orf17	84103	ucsc.edu	37	4	100458901	100458901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	C4orf17	NM_032149	exon6	c.T622C	p.S208P	.	.	28	4	53	0	.	90
CA5BP1	340591	ucsc.edu	37	X	15720954	15720954	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CA5BP1	.	.	.	.	.	.	25	4	77	0	.	108
CACNA2D1	781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81588622	81588622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CACNA2D1	NM_000722	exon38	c.G3128A	p.G1043E	.	.	39	5	88	0	.	96
CAD	790	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27460320	27460320	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CAD	NM_004341	exon28	c.C4470T	p.A1490A	.	.	59	14	205	2	.	295
CAPN5	726	ucsc.edu	37	11	76823693	76823693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CAPN5	NM_004055	exon4	c.G356A	p.G119D	.	.	49	2	179	0	.	90
CAPNS1	826	ucsc.edu	37	19	36637106	36637106	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CAPNS1	NM_001749	exon9	c.C613T	p.L205L	.	.	29	4	98	0	.	90
CBFA2T3	863	bcgsc.ca	37	16	88943532	88943532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CBFA2T3	NM_005187	exon12	c.A1814G	p.D605G	.	.	15	4	60	0	.	722
CCNE1	898	ucsc.edu	37	19	30303896	30303896	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CCNE1	NM_001238	exon4	c.A132G	p.E44E	.	.	43	5	116	0	.	1270
CCT6P1	643253	broad.mit.edu;ucsc.edu	37	7	65224875	65224875	+	RNA	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	.	.	.	17	9	68	0	.	.
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157805798	157805798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CD5L	NM_005894	exon3	c.G203T	p.G68V	.	.	82	49	244	1	.	91
CDH22	64405	ucsc.edu	37	20	44841786	44841786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CDH22	NM_021248	exon6	c.A880G	p.T294A	.	.	35	4	149	0	.	95
CDHR5	53841	bcgsc.ca	37	11	618647	618647	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CDHR5	NM_021924	exon13	c.C1912G	p.P638A	.	.	66	7	295	1	.	90
COL4A5	1287	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107834316	107834316	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	COL4A5	NM_000495	exon20	c.T1194C	p.P398P	.	.	37	26	124	1	.	133
COL9A3	1299	broad.mit.edu	37	20	61470062	61470062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	COL9A3	NM_001853	exon31	c.G1813A	p.G605S	.	.	95	5	284	0	.	514
CPE	1363	ucsc.edu	37	4	166385714	166385714	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CPE	NM_001873	exon2	c.T480C	p.D160D	.	.	36	4	112	0	.	155
CPNE8	144402	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39161460	39161460	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CPNE8	NM_153634	exon8	c.T552A	p.F184L	.	.	31	6	123	0	.	91
CSMD3	114788	broad.mit.edu	37	8	113364726	113364726	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CSMD3	NM_198123	exon39	c.T6174C	p.P2058P	.	.	79	5	132	0	.	1132
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	.	.	117	18	347	2	.	24361
CUL2	8453	ucsc.edu	37	10	35349841	35349841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CUL2	NM_001198778	exon4	c.A335G	p.E112G	.	.	34	4	96	0	.	229
CYFIP2	26999	ucsc.edu	37	5	156714053	156714053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CYFIP2	NM_001037332	exon3	c.A143G	p.D48G	.	.	34	4	124	1	.	22
CYP2C8	1558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96802834	96802834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CYP2C8	NM_000770	exon7	c.C962G	p.A321G	.	.	39	14	163	0	.	90
CYP4F24P	388514	broad.mit.edu;bcgsc.ca	37	19	15870968	15870968	+	RNA	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	.	.	.	9	7	20	0	.	.
DAG1	1605	ucsc.edu;bcgsc.ca	37	3	49569129	49569129	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DAG1	NM_001177642	exon4	c.C1185T	p.T395T	.	.	42	6	138	0	.	92
DERA	51071	ucsc.edu	37	12	16115769	16115769	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_015954	exon5	c.A396G	p.G132G	.	.	43	5	116	1	.	.
DFNB59	494513	ucsc.edu	37	2	179319186	179319186	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DFNB59	NM_001042702	exon3	c.A339G	p.K113K	.	.	34	4	59	1	.	22
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52428551	52428551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH1	NM_015512	exon67	c.T10697C	p.L3566P	.	.	86	28	228	0	.	67
DNAH14	127602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225586911	225586911	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH14	NM_001373	exon84	c.A13488G	p.K4496K	.	.	53	10	127	0	.	23
DNAH5	1767	bcgsc.ca	37	5	13922417	13922417	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH5	NM_001369	exon5	c.A459G	p.L153L	.	.	34	4	124	0	.	182
DNAH6	1768	ucsc.edu	37	2	84784882	84784882	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH6	NM_001370	exon11	c.T1626C	p.N542N	.	.	29	4	78	0	.	69
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196729549	196729549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH7	NM_018897	exon41	c.A6830G	p.K2277R	.	.	48	5	202	0	.	102
DNAJB4	11080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78481825	78481825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAJB4	NM_007034	exon3	c.A908G	p.N303S	.	.	42	12	94	0	.	226
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62971484	62971484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DOCK7	NM_001271999	exon36	c.G4453A	p.V1485I	.	.	20	6	69	0	.	92
DYNC1LI2	1783	ucsc.edu	37	16	66776481	66776481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DYNC1LI2	NM_006141	exon4	c.A389G	p.E130G	.	.	34	4	107	0	.	93
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139202242	139202242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ECT2L	NM_001195037	exon14	c.C1814T	p.A605V	.	.	62	17	106	0	.	22
ELP2	55250	ucsc.edu	37	18	33747152	33747152	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ELP2	NM_001242875	exon20	c.C2238T	p.S746S	.	.	31	4	104	0	.	290
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184290761	184290761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	EPHB3	NM_004443	exon3	c.G653T	p.G218V	.	.	34	16	93	0	.	1455
EVI2B	2124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	29632211	29632211	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	EVI2B	NM_006495	exon2	c.A417G	p.P139P	.	.	292	23	617	0	.	92
EXOC7	23265	ucsc.edu	37	17	74081839	74081839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	EXOC7	NM_001145297	exon15	c.A1688G	p.K563R	.	.	38	4	125	0	.	90
FAM184A	79632	ucsc.edu	37	6	119297087	119297087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FAM184A	NM_024581	exon12	c.A2578G	p.R860G	.	.	37	4	106	0	.	519
FARP1	10160	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99037964	99037964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FARP1	NM_005766	exon8	c.G655T	p.A219S	.	.	22	7	55	0	.	290
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48802359	48802359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FBN1	NM_000138	exon14	c.T1596G	p.D532E	.	.	52	21	167	0	.	92
FBXO42	54455	ucsc.edu	37	1	16578171	16578171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FBXO42	NM_018994	exon10	c.T1148C	p.V383A	.	.	40	4	130	0	.	228
FGGY	55277	ucsc.edu	37	1	60104046	60104046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FGGY	NM_001113411	exon11	c.T1220C	p.M407T	.	.	38	4	180	0	.	69
FKBP11	51303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49317594	49317594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FKBP11	NM_016594	exon5	c.G359A	p.G120E	.	.	65	13	196	0	.	226
FRA10AC1	118924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	95436450	95436450	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FRA10AC1	NM_145246	exon13	c.788-2A>G	.	.	.	87	45	237	1	.	90
GARNL3	84253	ucsc.edu	37	9	130098445	130098445	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GARNL3	NM_032293	exon11	c.C912T	p.T304T	.	.	33	4	94	0	.	516
GEMIN5	25929	ucsc.edu	37	5	154315433	154315433	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GEMIN5	NM_015465	exon3	c.T477C	p.C159C	.	.	43	4	78	1	.	228
GLTSCR1	29998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	48204844	48204844	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GLTSCR1	NM_015711	exon15	c.G3855A	p.E1285E	.	.	13	6	60	0	.	48
GOLGA6L6	727832	broad.mit.edu	37	15	20739825	20739825	+	Missense_Mutation	SNP	G	G	A	rs28590435		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_001145004	exon8	c.C1925T	p.T642M	.	.	16	4	40	2	.	.
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45000561	45000561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GOSR2	NM_001012511	exon1	c.G3A	p.M1I	.	.	64	19	210	0	.	92
GPR141	353345	ucsc.edu	37	7	37780315	37780315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GPR141	NM_181791	exon1	c.T320C	p.V107A	.	.	44	4	143	0	.	93
HIST1H2BK	85236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27114511	27114511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	HIST1H2BK	NM_080593	exon1	c.C67A	p.Q23K	.	.	84	40	201	1	.	68
HK3	3101	ucsc.edu	37	5	176308691	176308691	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	HK3	NM_002115	exon18	c.2393+2T>C	.	.	.	40	4	43	0	.	294
ICA1L	130026	ucsc.edu	37	2	203644318	203644318	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ICA1L	NM_138468	exon14	c.T1387C	p.L463L	.	.	33	4	113	0	.	90
ITGAV	3685	ucsc.edu	37	2	187523873	187523873	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ITGAV	NM_002210	exon18	c.C1828T	p.Q610X	.	.	46	4	105	0	.	653
KALRN	8997	ucsc.edu;bcgsc.ca	37	3	124209558	124209558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KALRN	NM_003947	exon30	c.G4408A	p.D1470N	.	.	24	4	64	0	.	738
KBTBD3	143879	ucsc.edu	37	11	105929612	105929612	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KBTBD3	NM_152433	exon2	c.A213G	p.A71A	.	.	44	4	138	0	.	91
KCNB2	9312	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73480262	73480262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNB2	NM_004770	exon2	c.C293A	p.S98Y	.	.	63	8	114	0	.	158
KCNK12	56660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	47748598	47748598	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNK12	NM_022055	exon2	c.C741G	p.L247L	.	.	31	11	110	0	.	91
KCNK5	8645	ucsc.edu;bcgsc.ca	37	6	39159107	39159107	+	Silent	SNP	G	G	T	rs146316205	byfrequency;alternate_allele	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNK5	NM_003740	exon5	c.C1059A	p.P353P	.	.	34	5	85	0	G|1.000;A|0.000	227
KCTD9	54793	ucsc.edu	37	8	25303692	25303692	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCTD9	NM_017634	exon2	c.T123C	p.S41S	.	.	45	4	234	2	.	90
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	8934018	8934018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KIDINS220	NM_020738	exon12	c.C1198T	p.P400S	.	.	24	12	62	0	.	93
KLHL24	54800	ucsc.edu	37	3	183397011	183397011	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KLHL24	NM_017644	exon8	c.G1740A	p.R580R	.	.	32	4	87	0	.	91
KRTAP29-1	100533177	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39458417	39458417	+	Silent	SNP	C	C	T	rs201973633		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_001257309	exon1	c.G687A	p.S229S	.	.	44	12	130	0	C|0.998;T|0.002	.
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7017348	7017348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LAMA1	NM_005559	exon20	c.G2737T	p.V913L	.	.	21	11	91	0	.	149
LEMD3	23592	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	65563533	65563533	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LEMD3	NM_001167614	exon1	c.C157G	p.Q53E	.	.	24	5	79	0	.	516
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	44089715	44089715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_144612	exon34	c.5277delG	p.K1759fs	.	.	46	18	171	0	.	.
LPCAT2	54947	ucsc.edu	37	16	55616959	55616959	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LPCAT2	NM_017839	exon14	c.A1584G	p.K528K	.	.	35	4	126	0	.	90
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	82409304	82409304	+	Missense_Mutation	SNP	G	G	A	rs139129579	byfrequency	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LPHN2	NM_012302	exon5	c.G1049A	p.R350Q	.	.	27	13	164	0	G|1.000;A|0.000	525
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133812144	133812144	+	Silent	SNP	C	C	T	rs199883304		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRGUK	NM_144648	exon1	c.C24T	p.L8L	.	.	37	10	69	0	C|0.999;T|0.000	227
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	170147487	170147487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRP2	NM_004525	exon8	c.C790T	p.H264Y	.	.	51	14	186	0	.	175
LRRC39	127495	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100623869	100623869	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRRC39	NM_144620	exon6	c.T431A	p.V144D	.	.	40	22	164	1	.	93
LTV1	84946	ucsc.edu	37	6	144183343	144183343	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LTV1	NM_032860	exon8	c.A1026G	p.E342E	.	.	29	4	63	0	.	91
MALT1	10892	ucsc.edu	37	18	56400765	56400765	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MALT1	NM_006785	exon11	c.A1359G	p.E453E	.	.	46	4	103	0	.	660
MAML1	9794	ucsc.edu	37	5	179192371	179192371	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MAML1	NM_014757	exon2	c.C360T	p.S120S	.	.	38	4	153	0	.	848
MCM6	4175	ucsc.edu	37	2	136598523	136598523	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MCM6	NM_005915	exon18	c.2350-2A>G	.	.	.	36	4	114	0	.	227
MCTP2	55784	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	94841767	94841767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MCTP2	NM_001159643	exon1	c.C273A	p.S91R	.	.	16	4	44	0	.	93
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	191301480	191301501	+	Frame_Shift_Del	DEL	TGAACTCAAGCACAGCAACCCC	TGAACTCAAGCACAGCAACCCC	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TGAACTCAAGCACAGCAACCCC	TGAACTCAAGCACAGCAACCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MFSD6	NM_017694	exon3	c.725_746del	p.242_249del	.	.	23	8	163	0	.	92
MGAM	8972	ucsc.edu	37	7	141727486	141727486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MGAM	NM_004668	exon10	c.A1172G	p.D391G	.	.	29	4	38	0	.	70
MID1IP1	58526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38664209	38664209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MID1IP1	NM_021242	exon2	c.A10G	p.I4V	.	.	49	39	183	0	.	130
MIR597	693182	ucsc.edu	37	8	9599239	9599239	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	.	.	.	34	4	136	0	.	.
MTMR6	9107	ucsc.edu	37	13	25840017	25840017	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MTMR6	NM_004685	exon5	c.T531C	p.S177S	.	.	38	4	54	0	.	94
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11316988	11316988	+	Splice_Site	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MTOR	NM_004958	exon5	c.504+2T>A	.	.	.	28	19	79	0	.	1439
NAPEPLD	222236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102760530	102760530	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NAPEPLD	NM_001122838	exon3	c.C435T	p.L145L	.	.	56	35	169	0	.	227
NAV2	89797	ucsc.edu	37	11	20114738	20114738	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NAV2	NM_001244963	exon31	c.G6086A	p.W2029X	.	.	37	4	170	0	.	96
NBEA	26960	ucsc.edu	37	13	35734109	35734109	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NBEA	NM_015678	exon22	c.T3801C	p.S1267S	.	.	20	4	50	0	.	144
NEK7	140609	ucsc.edu	37	1	198262080	198262080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NEK7	NM_133494	exon8	c.A595G	p.T199A	.	.	32	4	53	0	.	358
NELFA	7469	ucsc.edu	37	4	1991571	1991571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_005663	exon3	c.G441A	p.M147I	.	.	32	4	111	0	.	.
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155776225	155776225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NOX3	NM_015718	exon2	c.C87A	p.D29E	.	.	101	52	199	0	.	91
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84498384	84498384	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NRG3	NM_001165972	exon3	c.T1005C	p.T335T	.	.	68	21	158	0	.	522
NRG3	10718	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84745054	84745054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NRG3	NM_001010848	exon9	c.T1784C	p.V595A	.	.	30	6	120	0	.	522
NSFL1C	55968	broad.mit.edu;ucsc.edu	37	20	1433676	1433676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NSFL1C	NM_016143	exon6	c.G647T	p.G216V	.	.	41	4	71	0	.	90
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62560160	62560160	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NXF1	NM_006362	exon20	c.A1774T	p.N592Y	.	.	53	16	177	0	.	228
NYNRIN	57523	hgsc.bcm.edu	37	14	24878976	24878976	+	Missense_Mutation	SNP	C	C	T	rs8008203	byfrequency	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NYNRIN	NM_025081	exon4	c.C1976T	p.A659V	.	.	36	11	106	0	C|0.988;T|0.012	3
OAT	4942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126092375	126092375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	OAT	NM_000274	exon6	c.A763T	p.R255W	.	.	41	12	152	0	.	68
OR52E8	390079	ucsc.edu	37	11	5878229	5878229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	OR52E8	NM_001005168	exon1	c.C704G	p.S235C	.	.	48	4	110	0	.	70
OR8D2	283160	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124189177	124189177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	OR8D2	NM_001002918	exon1	c.G917T	p.R306M	.	.	34	9	70	0	.	113
OR8J3	81168	ucsc.edu	37	11	55905137	55905137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	OR8J3	NM_001004064	exon1	c.T58C	p.C20R	.	.	43	4	130	0	.	70
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	9546904	9546904	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PAK7	NM_177990	exon5	c.A1118T	p.Y373F	.	.	20	9	52	0	.	1434
PAMR1	25891	ucsc.edu	37	11	35492261	35492261	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PAMR1	NM_001001991	exon5	c.C600A	p.G200G	.	.	51	4	185	0	.	70
PCDH11X	27328	bcgsc.ca	37	X	91134054	91134054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCDH11X	NM_001168363	exon2	c.T2815C	p.Y939H	.	.	75	6	194	0	.	193
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215321	140215321	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCDHA7	NM_031852	exon1	c.C1353T	p.N451N	.	.	113	55	379	0	.	94
PCED1A	64773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2819099	2819099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_022760	exon6	c.G620T	p.R207L	.	.	23	11	78	0	.	.
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82581541	82581541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCLO	NM_014510	exon5	c.G8728A	p.V2910I	.	.	37	24	81	0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82784846	82784846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCLO	NM_014510	exon2	c.C1111A	p.P371T	.	.	117	16	251	0	.	29
PDRG1	81572	ucsc.edu	37	20	30538147	30538147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PDRG1	NM_030815	exon2	c.T131C	p.L44P	.	.	20	4	79	0	.	90
PHKG2	5261	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	30768227	30768227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PHKG2	NM_001172432	exon10	c.C1030T	p.R344W	.	.	13	3	57	0	.	334
PIKFYVE	200576	ucsc.edu	37	2	209218713	209218713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PIKFYVE	NM_015040	exon40	c.T5936C	p.L1979P	.	.	39	4	82	0	.	583
PLB1	151056	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28812636	28812636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PLB1	NM_153021	exon28	c.T2015C	p.M672T	.	.	21	8	50	0	.	141
PLEKHG6	55200	ucsc.edu	37	12	6435610	6435610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PLEKHG6	NM_001144856	exon14	c.T1541C	p.L514P	.	.	44	4	120	0	.	295
POC1A	25886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52179895	52179895	+	Missense_Mutation	SNP	C	C	T	rs139462706	byfrequency	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	POC1A	NM_015426	exon6	c.G646A	p.V216M	.	.	36	10	56	0	C|0.999;T|0.001	90
PPFIBP2	8495	bcgsc.ca	37	11	7662731	7662731	+	Missense_Mutation	SNP	A	A	G	rs77484205		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PPFIBP2	NM_003621	exon16	c.A1397G	p.D466G	.	.	35	12	155	12	.	273
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113519408	113519408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	PPP1R3A,NS,carcinoma,0	PPP1R3A	NM_002711	exon4	c.A1739G	p.D580G	.	.	83	48	228	0	.	832
PRPF4	9128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116049016	116049016	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PRPF4	NM_004697	exon9	c.C843T	p.F281F	.	.	37	10	145	0	.	93
PSG1	5669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43382065	43382065	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PSG1	NM_001184826	exon2	c.C430T	p.L144L	.	.	46	10	182	0	.	70
PUS7	54517	ucsc.edu	37	7	105146447	105146447	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PUS7	NM_019042	exon4	c.A540G	p.E180E	.	.	43	4	100	0	.	90
PZP	5858	ucsc.edu	37	12	9301585	9301585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PZP	NM_002864	exon36	c.G4432T	p.E1478X	.	.	24	4	125	0	.	157
QSER1	79832	ucsc.edu	37	11	32954127	32954127	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	QSER1	NM_001076786	exon4	c.T936C	p.P312P	.	.	36	4	164	1	.	95
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109695030	109695030	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RGAG1	NM_020769	exon3	c.T1185A	p.S395S	.	.	17	12	57	0	.	132
RGPD8	727851	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	G	C	rs15849		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_001164463	exon23	c.C5278G	p.P1760A	.	.	254	5	586	0	C|1.000;|0.000	.
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78328357	78328357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RNF213	NM_001256071	exon36	c.C10843A	p.Q3615K	.	.	41	9	73	0	.	577
RNF220	55182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	45111114	45111114	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RNF220	NM_018150	exon12	c.A1399T	p.K467X	.	.	29	14	148	0	.	228
RNR2	6053	broad.mit.edu	37	MT	2008	2008	+	RNA	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	.	.	.	432	12	12	0	.	.
RPRD1A	55197	bcgsc.ca	37	18	33647503	33647503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RPRD1A	.	.	.	.	.	.	5	3	22	0	.	154
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2013233	2013233	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RPS2	NM_002952	exon4	c.C292T	p.L98L	.	.	34	14	129	0	.	90
RPS6KL1	83694	bcgsc.ca	37	14	75376447	75376455	+	In_Frame_Del	DEL	CTAGCACCG	CTAGCACCG	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	CTAGCACCG	CTAGCACCG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RPS6KL1	NM_031464	exon7	c.1061_1069del	p.354_357del	.	.	23	4	81	0	.	359
RUNX3	864	ucsc.edu;bcgsc.ca	37	1	25291022	25291022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RUNX3	NM_001031680	exon1	c.C41T	p.S14L	.	.	29	4	65	0	.	414
SCN10A	6336	ucsc.edu	37	3	38805020	38805020	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SCN10A	NM_006514	exon5	c.T667C	p.L223L	.	.	40	4	103	0	.	99
SGCZ	137868	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	13959983	13959983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SGCZ	NM_139167	exon7	c.A646G	p.I216V	.	.	13	8	62	0	.	93
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38694768	38694768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SIPA1L3	NM_015073	exon21	c.G5122A	p.E1708K	.	.	18	6	46	0	.	91
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26779584	26779584	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SKAP2	NM_003930	exon6	c.308-1G>A	.	.	.	24	6	43	0	.	91
SLC1A5	6510	broad.mit.edu;ucsc.edu	37	19	47280545	47280545	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SLC1A5	NM_005628	exon6	c.C1176T	p.L392L	.	.	25	5	98	0	.	90
SLC2A10	81031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45354541	45354541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SLC2A10	NM_030777	exon2	c.G866A	p.G289E	.	.	25	12	118	0	.	91
SLCO1B7	338821	broad.mit.edu	37	12	21168632	21168632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_001009562	exon1	c.G3A	p.M1I	.	.	12	3	52	0	.	.
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217280006	217280006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SMARCAL1	NM_014140	exon3	c.G579C	p.K193N	.	.	35	8	116	0	.	293
SMCR7	125170	ucsc.edu;bcgsc.ca	37	17	18166172	18166172	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SMCR7	NM_148886	exon2	c.C171T	p.A57A	.	.	12	4	78	0	.	90
SMIM3	85027	ucsc.edu;bcgsc.ca	37	5	150175100	150175100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_032947	exon2	c.T98C	p.I33T	.	.	25	4	80	1	.	.
SON	6651	ucsc.edu	37	21	34926969	34926969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SON	NM_032195	exon3	c.A5432G	p.K1811R	.	.	33	4	72	0	.	97
SOS2	6655	ucsc.edu	37	14	50641256	50641256	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SOS2	NM_006939	exon8	c.T984C	p.G328G	.	.	46	5	118	0	.	849
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	26912926	26912926	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SPAG5	NM_006461	exon7	c.G1696T	p.E566X	.	.	71	19	206	0	.	90
SPEN	23013	ucsc.edu	37	1	16203096	16203096	+	Silent	SNP	C	C	T	rs150763835	alternate_allele	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SPEN	NM_015001	exon3	c.C804T	p.S268S	.	.	40	4	154	0	C|1.000;A|0.000	298
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883534	228883534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SPHKAP	NM_030623	exon7	c.C2036T	p.S679F	.	.	63	22	194	0	.	167
STAM2	10254	ucsc.edu	37	2	152982782	152982782	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	STAM2	NM_005843	exon12	c.T1137C	p.P379P	.	.	43	4	125	1	.	187
STAT1	6772	ucsc.edu	37	2	191859850	191859850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	STAT1	NM_007315	exon10	c.T881C	p.I294T	.	.	47	4	111	0	.	1335
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32816536	32816536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TAP1	NM_000593	exon7	c.C1639T	p.R547C	.	.	37	8	94	0	.	91
TCN1	6947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	59620709	59620709	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TCN1	NM_001062	exon8	c.G1207T	p.E403X	.	.	70	8	198	0	.	92
THAP7-AS1	439931	broad.mit.edu;ucsc.edu	37	22	21363434	21363434	+	RNA	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	.	.	.	36	18	150	0	.	.
TMBIM1	64114	ucsc.edu	37	2	219144043	219144043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TMBIM1	NM_022152	exon4	c.A337G	p.T113A	.	.	37	4	110	0	.	90
TMC7	79905	ucsc.edu	37	16	19020664	19020664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TMC7	NM_024847	exon2	c.A238G	p.R80G	.	.	26	4	103	0	.	93
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	94800156	94800156	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TMEM67	NM_153704	exon14	c.T1497C	p.D499D	.	.	95	31	147	0	.	92
TNF	7124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31544935	31544935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TNF	NM_000594	exon4	c.G323A	p.R108Q	.	.	25	5	66	0	.	1085
TP53I11	9537	ucsc.edu;bcgsc.ca	37	11	44959105	44959105	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TP53I11	NM_001258323	exon5	c.188+1G>T	.	.	.	48	5	222	0	.	227
TPH2	121278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72388234	72388234	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TPH2	NM_173353	exon8	c.A957G	p.E319E	.	.	41	13	142	0	.	93
TRIO	7204	ucsc.edu	37	5	14419919	14419919	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TRIO	NM_007118	exon34	c.C4992T	p.I1664I	.	.	44	4	172	0	.	562
TRIP11	9321	ucsc.edu	37	14	92442483	92442483	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TRIP11	NM_004239	exon17	c.T5311C	p.L1771L	.	.	34	4	56	0	.	1400
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230723949	230723949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TRIP12	NM_004238	exon3	c.A440T	p.Q147L	.	.	50	21	101	0	.	572
TRMT61B	55006	ucsc.edu	37	2	29087907	29087907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TRMT61B	NM_017910	exon2	c.A778G	p.M260V	.	.	40	4	77	0	.	90
TSC22D2	9819	ucsc.edu	37	3	150128958	150128958	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TSC22D2	NM_014779	exon1	c.T1821C	p.S607S	.	.	38	4	150	0	.	91
TTC17	55761	ucsc.edu	37	11	43418974	43418974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TTC17	NM_018259	exon7	c.T851C	p.V284A	.	.	27	4	67	0	.	95
TTN	7273	ucsc.edu	37	2	179597201	179597201	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TTN	NM_001267550	exon56	c.A16587G	p.G5529G	.	.	40	4	105	0	.	636
TUBGCP4	27229	ucsc.edu;bcgsc.ca	37	15	43675659	43675659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TUBGCP4	NM_014444	exon7	c.T680C	p.I227T	.	.	19	4	72	0	.	93
UBA52	7311	ucsc.edu	37	19	18685748	18685748	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	UBA52	NM_001033930	exon4	c.C259T	p.Q87X	.	.	34	4	83	0	.	90
UGT1A5	54579	ucsc.edu	37	2	234622419	234622419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	UGT1A5	NM_019078	exon1	c.T782C	p.F261S	.	.	59	1	222	1	.	3
UNC13B	10497	ucsc.edu	37	9	35375180	35375180	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	UNC13B	NM_006377	exon13	c.T1350C	p.S450S	.	.	36	4	110	0	.	157
WDR36	134430	ucsc.edu	37	5	110443007	110443007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	WDR36	NM_139281	exon12	c.A1363G	p.S455G	.	.	34	4	98	1	.	92
WDR96	80217	bcgsc.ca	37	10	105991999	105991999	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	WDR96	NM_025145	exon1	c.G6A	p.A2A	.	.	17	4	125	0	.	95
WISP2	8839	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	43344036	43344036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	WISP2	NM_003881	exon1	c.G5A	p.R2K	.	.	12	5	47	0	.	130
WNT8A	7478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137426639	137426639	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	WNT8A	NM_058244	exon6	c.C933T	p.S311S	.	.	49	25	121	0	.	524
YME1L1	10730	hgsc.bcm.edu;bcgsc.ca	37	10	27436456	27436456	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	YME1L1	NM_139312	exon3	c.310delC	p.R104fs	.	.	92	43	284	0	.	91
ZNF185	7739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152106689	152106689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF185	NM_001178106	exon16	c.C1286T	p.A429V	.	.	33	26	102	0	.	133
ZNF248	57209	bcgsc.ca	37	10	38126562	38126562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF248	NM_001267606	exon3	c.C221A	p.P74Q	.	.	69	9	182	0	.	91
ZNF398	57541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148863347	148863347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF398	NM_170686	exon3	c.A518G	p.K173R	.	.	62	25	145	0	.	91
ZNF536	9745	ucsc.edu	37	19	30934568	30934568	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF536	NM_014717	exon2	c.T99C	p.S33S	.	.	37	4	112	2	.	144
ZNF667	63934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952618	56952618	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF667	NM_022103	exon5	c.C1746T	p.P582P	.	.	29	11	95	0	.	91
ZNF70	7621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24086004	24086004	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF70	NM_021916	exon2	c.T1324A	p.S442T	.	.	40	23	166	0	.	92
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	88964537	88964537	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF804B	NM_181646	exon4	c.C2241T	p.H747H	.	.	58	6	131	0	.	101
MEIS3	56917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47912456	47912457	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TC	TC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	p.D341L	.	.	.	.	.	.	.	
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32724674	32724675	+	Silent	DNP	TC	TC	AT	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	p.F2842F	.	.	.	.	.	.	.	
