Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABAT	18	bcgsc.ca	37	16	8873424	8873424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ABAT	NM_001127448	exon15	c.T1358C	p.L453P	.	.	47	4	60	0	.	91
ACOX1	51	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73975154	73975154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACOX1	NM_007292	exon1	c.A1C	p.M1L	.	.	36	8	61	0	.	91
ACOX3	8310	bcgsc.ca	37	4	8383307	8383307	+	Missense_Mutation	SNP	A	A	C	rs200650508		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACOX3	NM_001101667	exon14	c.T1565G	p.V522G	.	.	86	20	118	4	A|0.999;C|0.001	90
ACOX3	8310	ucsc.edu	37	4	8376713	8376713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACOX3	NM_001101667	exon15	c.T1820C	p.L607P	.	.	41	4	55	0	.	90
ACTR1A	10121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104247919	104247919	+	Silent	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACTR1A	NM_005736	exon4	c.T303G	p.T101T	.	.	73	17	129	0	.	90
ADAMTSL3	57188	ucsc.edu;bcgsc.ca	37	15	84611387	84611387	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ADAMTSL3	NM_207517	exon18	c.T2157C	p.C719C	.	.	35	4	60	0	.	1153
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	111883814	111883814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ADD3	NM_001121	exon10	c.C1183G	p.R395G	.	.	72	22	75	0	.	157
AFF1	4299	bcgsc.ca	37	4	87967906	87967906	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	AFF1	NM_001166693	exon4	c.A219G	p.E73E	.	.	96	4	140	0	.	289
AFMID	125061	bcgsc.ca	37	17	76187098	76187098	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	AFMID	NM_001145526	exon2	c.A111G	p.G37G	.	.	116	6	162	0	.	136
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74274387	74274388	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALB	NM_000477	exon4	c.347_348insA	p.A116fs	.	.	77	19	141	0	.	96
ALG5	29880	bcgsc.ca	37	13	37539774	37539774	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALG5	NM_013338	exon8	c.G711A	p.G237G	.	.	80	4	115	0	.	90
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45939709	45939709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALOX5	NM_000698	exon13	c.C1820T	p.A607V	.	.	118	11	102	0	.	228
AMOT	154796	bcgsc.ca	37	X	112021838	112021838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	AMOT	NM_001113490	exon11	c.T3212C	p.L1071P	.	.	54	4	50	0	.	131
AMPD1	270	bcgsc.ca	37	1	115215738	115215738	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	AMPD1	NM_000036	exon16	c.A2340G	p.E780E	.	.	66	4	124	0	.	293
AMPD2	271	bcgsc.ca	37	1	110169528	110169528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	AMPD2	NM_004037	exon6	c.T874C	p.S292P	.	.	61	4	110	0	.	292
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4224480	4224480	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ANKRD24	NM_133475	exon22	c.G3419C	p.R1140T	.	.	48	15	84	0	.	68
ANXA2P3	305	bcgsc.ca	37	10	66585988	66585988	+	RNA	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	.	.	.	.	.	.	56	4	123	0	.	.
APOB	338	bcgsc.ca	37	2	21232457	21232461	+	Frame_Shift_Del	DEL	TTTAA	TTTAA	-	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	TTTAA	TTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	APOB	NM_000384	exon26	c.7279_7283del	p.2427_2428del	.	.	32	4	71	0	.	175
ARAP1	116985	bcgsc.ca	37	11	72406039	72406039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ARAP1	NM_001040118	exon27	c.A3680G	p.E1227G	.	.	65	4	83	0	.	91
ARG1	383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	131904974	131904974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ARG1	NM_001244438	exon8	c.A919G	p.I307V	.	.	78	44	85	0	.	91
ARHGAP12	94134	bcgsc.ca	37	10	32128571	32128571	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ARHGAP12	NM_018287	exon8	c.A1365G	p.Q455Q	.	.	70	4	70	0	.	227
ARHGAP9	64333	bcgsc.ca	37	12	57867467	57867467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ARHGAP9	NM_032496	exon17	c.T1943C	p.L648P	.	.	161	6	164	0	.	651
ATRX	546	ucsc.edu	37	X	76953096	76953096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ATRX	NM_138270	exon4	c.T217C	p.S73P	.	.	40	4	46	0	.	248
ATXN1	6310	hgsc.bcm.edu	37	6	16327903	16327904	+	In_Frame_Ins	INS	-	-	TGA	rs71806515	alternate_allele	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ATXN1	NM_000332	exon8	c.639_640insTCA	p.Q213delinsHQ	.	.	44	30	55	0	.	93
ATXN7	6314	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	63898497	63898497	+	Missense_Mutation	SNP	A	A	G	rs199663915		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ATXN7	NM_000333	exon3	c.A223G	p.M75V	.	.	48	15	57	0	A|0.996;G|0.004	90
BAI3	577	bcgsc.ca	37	6	69949053	69949053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BAI3	NM_001704	exon20	c.T2749C	p.F917L	.	.	77	4	133	0	.	1148
BAIAP2L1	55971	bcgsc.ca	37	7	97944792	97944792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BAIAP2L1	NM_018842	exon7	c.A619G	p.I207V	.	.	78	5	91	0	.	91
BARD1	580	bcgsc.ca	37	2	215645518	215645518	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BARD1	NM_000465	exon4	c.T1080C	p.P360P	.	.	65	4	105	0	.	415
BARD1	580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215646146	215646146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BARD1	NM_000465	exon4	c.G452A	p.S151N	.	.	42	7	102	0	.	415
BCAM	4059	ucsc.edu	37	19	45316695	45316695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BCAM	NM_001013257	exon6	c.A602G	p.E201G	.	.	34	4	16	0	.	91
BCAN	63827	bcgsc.ca	37	1	156622526	156622526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BCAN	NM_198427	exon8	c.T1784C	p.L595P	.	.	95	5	91	0	.	516
BIN1	274	bcgsc.ca	37	2	127827666	127827666	+	Missense_Mutation	SNP	T	T	C	rs11554585		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BIN1	NM_139346	exon5	c.A316G	p.N106D	.	.	73	4	53	0	.	655
BPTF	2186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65822352	65822352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BPTF	NM_004459	exon1	c.A512G	p.D171G	.	.	114	17	222	1	.	94
BRWD1	54014	bcgsc.ca	37	21	40630411	40630411	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BRWD1	NM_018963	exon19	c.2071+2T>C	.	.	.	80	5	195	0	.	94
C14orf183	196913	bcgsc.ca	37	14	50559360	50559360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	C14orf183	NM_001014830	exon1	c.T2C	p.M1T	.	.	87	4	96	0	.	90
C1QBP	708	bcgsc.ca	37	17	5341544	5341544	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	C1QBP	NM_001212	exon2	c.A282G	p.R94R	.	.	71	4	137	0	.	91
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37226698	37226698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	C5orf42	NM_023073	exon12	c.A1999T	p.T667S	.	.	184	41	142	0	.	94
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179753268	179753268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC141	NM_173648	exon9	c.G1393T	p.G465C	.	.	78	19	162	0	.	78
CCDC36	339834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49294178	49294178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC36	NM_001135197	exon8	c.G1248A	p.M416I	.	.	81	17	145	0	.	92
CCDC54	84692	bcgsc.ca	37	3	107096859	107096859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC54	NM_032600	exon1	c.A425G	p.E142G	.	.	145	5	192	0	.	90
CCDC71	64925	ucsc.edu	37	3	49200734	49200734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC71	NM_022903	exon2	c.A908G	p.Q303R	.	.	44	4	71	0	.	91
CCNG1	900	bcgsc.ca	37	5	162868277	162868277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCNG1	NM_199246	exon4	c.C458T	p.T153I	.	.	99	4	151	0	.	725
CCT6A	908	bcgsc.ca	37	7	56130719	56130719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCT6A	NM_001762	exon14	c.A1537G	p.T513A	.	.	141	5	198	0	.	91
CD163L1	283316	bcgsc.ca	37	12	7551063	7551063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD163L1	NM_174941	exon7	c.A1526G	p.N509S	.	.	128	5	193	0	.	100
CD200R1L	344807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112548190	112548190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD200R1L	NM_001008784	exon2	c.A88G	p.N30D	.	.	157	34	231	0	.	91
CD2	914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117311336	117311336	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD2	NM_001767	exon5	c.C987A	p.P329P	.	.	109	35	148	0	.	153
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72539019	72539019	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD300C	NM_006678	exon3	c.G508T	p.E170X	.	.	118	37	144	0	.	90
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72539020	72539020	+	Silent	SNP	G	G	T	rs147705680	alternate_allele	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD300C	NM_006678	exon3	c.C507A	p.P169P	.	.	121	37	145	0	G|1.000;A|0.000	90
CDH13	1012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83816877	83816877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CDH13	NM_001220488	exon14	c.G2075T	p.S692I	.	.	49	14	92	1	.	67
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19483500	19483500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CDH18	NM_004934	exon12	c.C1792T	p.R598W	.	.	322	61	234	0	.	159
CDHR5	53841	bcgsc.ca	37	11	618647	618647	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CDHR5	NM_021924	exon13	c.C1912G	p.P638A	.	.	175	10	281	3	.	90
CDKL1	8814	bcgsc.ca	37	14	50862513	50862513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CDKL1	NM_004196	exon1	c.A77G	p.D26G	.	.	81	4	139	0	.	335
CEP95	90799	bcgsc.ca	37	17	62528972	62528972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CEP95	NM_138363	exon15	c.A1688G	p.H563R	.	.	121	5	142	0	.	23
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61978128	61978128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CHRNA4	NM_000744	exon6	c.G1846T	p.G616C	.	.	72	29	57	0	.	91
CIZ1	25792	bcgsc.ca	37	9	130928520	130928520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CIZ1	NM_001257975	exon18	c.T2821C	p.S941P	.	.	88	18	107	13	.	92
CLCA1	1179	bcgsc.ca	37	1	86939174	86939174	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CLCA1	NM_001285	exon2	c.T237C	p.I79I	.	.	83	4	139	0	.	91
COL19A1	1310	bcgsc.ca	37	6	70859929	70859929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	COL19A1	NM_001858	exon30	c.G2029A	p.G677S	.	.	67	4	110	0	.	156
CROCC	9696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17256975	17256975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CROCC	NM_014675	exon7	c.G735T	p.Q245H	.	.	123	25	150	0	.	137
CRTC3	64784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91150628	91150628	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CRTC3	NM_022769	exon6	c.T495C	p.A165A	.	.	38	5	58	0	.	393
CTCF	10664	bcgsc.ca	37	16	67671762	67671762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CTCF	NM_006565	exon12	c.T2171C	p.M724T	.	.	72	4	105	0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274911	41274911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CTNNB1	NM_001098209	exon8	c.T1161A	p.N387K	.	.	100	22	162	0	.	24361
CYB5RL	606495	bcgsc.ca	37	1	54640412	54640412	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_001031672	exon8	c.G828A	p.L276L	.	.	31	5	48	0	.	.
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50918256	50918256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DCC	NM_005215	exon17	c.A2687G	p.K896R	.	.	49	20	52	0	.	225
DCHS1	8642	bcgsc.ca	37	11	6650041	6650041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DCHS1	NM_003737	exon13	c.T5182C	p.S1728P	.	.	91	6	124	1	.	73
DHX37	57647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	125451669	125451669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DHX37	NM_032656	exon11	c.G1504A	p.E502K	.	.	87	7	103	0	.	227
DMXL2	23312	bcgsc.ca	37	15	51806725	51806725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DMXL2	NM_001174117	exon15	c.T2558C	p.F853S	.	.	46	4	86	0	.	99
DNAH10	196385	bcgsc.ca	37	12	124387618	124387618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DNAH10	NM_207437	exon56	c.T9419C	p.L3140P	.	.	79	4	82	0	.	95
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13794081	13794081	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DNAH5	NM_001369	exon48	c.T7974C	p.D2658D	.	.	225	118	243	0	.	182
DND1	373863	mdanderson.org	37	5	140052469	140052469	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DND1	NM_194249	exon3	c.A165G	p.P55P	.	.	26	8	26	2	.	90
DNER	92737	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230231627	230231627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DNER	NM_139072	exon12	c.C2064A	p.S688R	.	.	65	14	120	1	.	524
DOCK5	80005	bcgsc.ca	37	8	25174575	25174575	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DOCK5	NM_024940	exon14	c.A1371G	p.K457K	.	.	71	4	119	0	.	71
DPP6	1804	bcgsc.ca	37	7	154672644	154672644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DPP6	NM_130797	exon21	c.T2125C	p.F709L	.	.	82	5	155	0	.	652
DPY19L4	286148	broad.mit.edu	37	8	95738631	95738631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DPY19L4	NM_181787	exon2	c.A89G	p.K30R	.	.	254	5	189	0	.	92
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	21	38865436	38865436	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DYRK1A	NM_001396	exon7	c.G1069T	p.G357X	.	.	73	16	132	0	.	792
DZIP3	9666	bcgsc.ca	37	3	108373113	108373113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DZIP3	NM_014648	exon19	c.T2155C	p.F719L	.	.	74	4	112	0	.	91
EFNB2	1948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	107164993	107164993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EFNB2	NM_004093	exon2	c.C290T	p.P97L	.	.	123	36	225	0	.	91
EHMT1	79813	bcgsc.ca	37	9	140648673	140648673	+	Silent	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EHMT1	NM_001145527	exon8	c.C1299G	p.T433T	.	.	81	5	162	1	.	154
ELK4	2005	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205589534	205589534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ELK4	NM_021795	exon3	c.A640T	p.I214F	.	.	177	21	186	1	.	658
EML5	161436	bcgsc.ca	37	14	89220976	89220976	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EML5	NM_183387	exon2	c.A237G	p.G79G	.	.	61	4	73	0	.	93
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71508497	71508497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ENAM	NM_031889	exon9	c.A1354G	p.K452E	.	.	46	12	92	0	.	93
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212543852	212543852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ERBB4	NM_001042599	exon13	c.G1547T	p.G516V	.	.	172	43	256	0	.	1461
EVPL	2125	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74011082	74011082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EVPL	NM_001988	exon17	c.T2137A	p.F713I	.	.	52	5	38	0	.	93
EXOC4	60412	broad.mit.edu	37	7	133164852	133164852	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EXOC4	NM_021807	exon9	c.A1377G	p.E459E	.	.	202	4	240	0	.	159
FAM104B	90736	broad.mit.edu	37	X	55172572	55172572	+	Missense_Mutation	SNP	G	G	A	rs111573608		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAM104B	NM_001166700	exon3	c.C296T	p.T99I	.	.	14	4	33	0	.	130
FAM120A	23196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96318785	96318785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAM120A	NM_014612	exon13	c.G2396T	p.W799L	.	.	132	34	180	0	.	90
FAM186A	121006	bcgsc.ca	37	12	50749713	50749713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAM186A	NM_001145475	exon4	c.T902C	p.L301P	.	.	84	4	134	0	.	68
FAM194A	131831	bcgsc.ca	37	3	150391772	150391772	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAM194A	NM_152394	exon11	c.T1314C	p.T438T	.	.	52	4	68	0	.	93
FAM83G	644815	broad.mit.edu	37	17	18874946	18874946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAM83G	NM_001039999	exon6	c.A2198G	p.N733S	.	.	60	4	85	1	.	69
FANCC	2176	bcgsc.ca	37	9	97869536	97869536	+	Missense_Mutation	SNP	C	C	T	rs1800367	byfrequency	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FANCC	NM_001243743	exon14	c.G1345A	p.V449M	.	.	72	6	105	1	C|0.976;T|0.024	970
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126367520	126367520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAT4	NM_024582	exon8	c.G7266T	p.L2422F	.	.	48	13	110	1	.	108
FGD4	121512	bcgsc.ca	37	12	32786596	32786596	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FGD4	NM_139241	exon15	c.A1875G	p.E625E	.	.	25	3	47	0	.	229
FIGNL1	63979	bcgsc.ca	37	7	50513038	50513038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FIGNL1	NM_001042762	exon4	c.A1948G	p.T650A	.	.	118	5	145	0	.	93
FOXK2	3607	bcgsc.ca	37	17	80540690	80540690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FOXK2	NM_004514	exon5	c.A983G	p.K328R	.	.	65	4	86	0	.	226
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	39261907	39261907	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FREM2	NM_207361	exon1	c.C426A	p.G142G	.	.	42	17	12	0	.	100
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17450871	17450871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GAB4	NM_001037814	exon4	c.C899A	p.T300N	.	.	77	29	152	0	.	91
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30827899	30827899	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GADL1	NM_207359	exon14	c.1251-1G>A	.	.	.	52	16	105	0	.	90
GBGT1	26301	bcgsc.ca	37	9	136029343	136029343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GBGT1	NM_021996	exon7	c.A665G	p.D222G	.	.	51	4	86	0	.	90
GOLGA5	9950	bcgsc.ca	37	14	93273204	93273204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GOLGA5	NM_005113	exon3	c.A668G	p.E223G	.	.	77	4	123	0	.	677
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89989829	89989829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GPR98	NM_032119	exon33	c.C7256A	p.P2419H	.	.	109	31	169	0	.	103
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153149817	153149817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GRIA1	NM_001258021	exon13	c.G2142A	p.M714I	.	.	122	63	181	0	.	96
GRIP1	23426	bcgsc.ca	37	12	66788012	66788012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GRIP1	NM_001178074	exon16	c.T1949C	p.L650P	.	.	72	4	103	0	.	494
HAVCR1	26762	bcgsc.ca	37	5	156469670	156469670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	HAVCR1	NM_001099414	exon6	c.T805C	p.S269P	.	.	87	5	134	0	.	92
HDAC6	10013	bcgsc.ca	37	X	48675752	48675752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	HDAC6	NM_006044	exon20	c.T1811C	p.V604A	.	.	88	4	93	0	.	230
HIST2H2AC	8338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858529	149858529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	HIST2H2AC	NM_003517	exon1	c.C5G	p.S2C	.	.	155	67	86	1	.	92
HOOK1	51361	ucsc.edu;bcgsc.ca	37	1	60287594	60287594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	HOOK1	NM_015888	exon2	c.T128C	p.M43T	.	.	38	4	41	0	.	154
IFRD1	3475	bcgsc.ca	37	7	112098953	112098953	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	IFRD1	NM_001007245	exon6	c.A447G	p.A149A	.	.	80	4	115	0	.	91
INPP5B	3633	bcgsc.ca	37	1	38348570	38348570	+	Missense_Mutation	SNP	T	T	C	rs201236404		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	INPP5B	NM_005540	exon14	c.A1340G	p.D447G	.	.	187	41	284	17	.	227
INSRR	3645	broad.mit.edu	37	1	156812965	156812965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	INSRR	NM_014215	exon17	c.G2957A	p.G986D	.	.	188	4	178	0	.	1403
INTU	27152	bcgsc.ca	37	4	128627821	128627821	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	INTU	NM_015693	exon12	c.T1968C	p.C656C	.	.	197	6	302	0	.	91
ITGA2B	3674	bcgsc.ca	37	17	42451753	42451753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ITGA2B	NM_000419	exon29	c.T3029C	p.L1010P	.	.	77	4	103	0	.	228
KDELC2	143888	bcgsc.ca	37	11	108352099	108352099	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KDELC2	NM_153705	exon5	c.T906C	p.P302P	.	.	21	3	65	0	.	91
KDM4D	55693	bcgsc.ca	37	11	94731491	94731491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KDM4D	NM_018039	exon3	c.T955C	p.F319L	.	.	64	4	140	0	.	226
KIAA1009	22832	bcgsc.ca	37	6	84879131	84879131	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KIAA1009	NM_014895	exon18	c.T2301C	p.R767R	.	.	53	4	87	0	.	91
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113720527	113720527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KIAA1407	NM_020817	exon13	c.A2078G	p.Q693R	.	.	211	63	319	0	.	92
KIAA2018	205717	bcgsc.ca	37	3	113377115	113377115	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KIAA2018	NM_001009899	exon7	c.A3414G	p.R1138R	.	.	97	4	102	0	.	93
KIF17	57576	bcgsc.ca	37	1	21041996	21041996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KIF17	NM_020816	exon2	c.A368G	p.E123G	.	.	46	4	66	0	.	94
KIF5B	3799	bcgsc.ca	37	10	32337430	32337430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KIF5B	NM_004521	exon2	c.A176G	p.E59G	.	.	74	4	107	0	.	399
KLK8	11202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51503826	51503826	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KLK8	NM_144505	exon3	c.A219T	p.A73A	.	.	74	28	101	0	.	604
KRTAP4-3	85290	mdanderson.org	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	217	75	200	1	A|0.046;T|0.954	22
KRTAP4-6	81871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39296423	39296423	+	Missense_Mutation	SNP	C	C	T	rs349790		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_030976	exon1	c.G317A	p.R106H	.	.	58	13	83	0	C|0.989;T|0.011	.
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	102	27	117	1	T|0.717;C|0.283	91
KRTAP5-10	387273	mdanderson.org	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KRTAP5-10	NM_001012710	exon1	c.C69T	p.G23G	.	.	86	15	85	0	C|0.500;T|0.500	91
LDLRAD4	753	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13645383	13645383	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_181482	exon6	c.T594C	p.S198S	.	.	64	18	91	1	.	.
LILRA6	79168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54746124	54746124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRA6	NM_024318	exon3	c.G133A	p.V45M	.	.	379	57	601	0	.	24
LILRB1	10859	bcgsc.ca	37	19	55146200	55146200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRB1	NM_001081637	exon10	c.A1472G	p.K491R	.	.	93	4	83	0	.	137
LILRB4	11006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55176617	55176617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRB4	NM_006847	exon6	c.C743T	p.S248L	.	.	162	38	225	0	.	93
LTBP1	4052	broad.mit.edu	37	2	33500133	33500133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LTBP1	NM_206943	exon17	c.A2845T	p.S949C	.	.	77	9	106	2	.	230
LZTS3	0	bcgsc.ca	37	20	3146968	3146968	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_014731	exon2	c.T498C	p.P166P	.	.	71	4	61	0	.	.
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71489897	71489897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MAP1B	NM_005909	exon5	c.G715A	p.V239I	.	.	83	13	144	0	.	155
MATR3	9782	bcgsc.ca	37	5	138643308	138643308	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MATR3	NM_018834	exon2	c.A204G	p.G68G	.	.	169	6	215	0	.	91
MBD3L3	653657	bcgsc.ca	37	19	7056595	7056595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_001164425	exon2	c.C365T	p.T122M	.	.	163	23	234	0	.	.
MEN1	4221	bcgsc.ca	37	11	64573168	64573168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MEN1	NM_130800	exon8	c.T1139C	p.L380P	.	.	84	5	153	0	.	3017
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36220117	36220117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MLL4	NM_014727	exon22	c.A4837G	p.I1613V	.	.	132	37	153	1	.	697
MMD2	221938	broad.mit.edu	37	7	4955685	4955685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MMD2	NM_198403	exon4	c.T316C	p.F106L	.	.	178	5	187	0	.	514
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90856345	90856345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MMRN1	NM_007351	exon6	c.C1514A	p.S505Y	.	.	134	26	216	0	.	94
MNS1	55329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56748716	56748716	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MNS1	NM_018365	exon3	c.G229C	p.E77Q	.	.	104	32	279	0	.	91
MS4A15	219995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60543106	60543106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MS4A15	NM_001098835	exon7	c.G641A	p.S214N	.	.	45	17	99	0	.	69
MS4A4A	51338	bcgsc.ca	37	11	60075606	60075606	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MS4A4A	NM_148975	exon7	c.T675C	p.S225S	.	.	88	4	139	0	.	90
MSH5	4439	bcgsc.ca	37	6	31728477	31728477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MSH5	NM_025259	exon20	c.T1874C	p.I625T	.	.	101	5	104	0	.	661
MTTP	4547	broad.mit.edu	37	4	100496086	100496086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MTTP	NM_000253	exon2	c.T20C	p.L7P	.	.	338	6	619	0	.	93
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8994178	8994178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MUC16	NM_024690	exon65	c.G41507T	p.G13836V	.	.	93	22	123	0	.	566
MURC	347273	bcgsc.ca	37	9	103348072	103348072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MURC	NM_001018116	exon2	c.T434C	p.L145P	.	.	62	4	80	0	.	69
MXRA5	25878	broad.mit.edu;bcgsc.ca	37	X	3240953	3240953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MXRA5	NM_015419	exon5	c.C2773G	p.H925D	.	.	227	6	203	0	.	136
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108220704	108220704	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MYH15	NM_014981	exon5	c.256-2A>G	.	.	.	77	19	148	0	.	73
NBEA	26960	bcgsc.ca	37	13	35733968	35733968	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NBEA	NM_015678	exon22	c.T3660C	p.I1220I	.	.	57	4	124	0	.	144
NCOA3	8202	hgsc.bcm.edu	37	20	46279860	46279860	+	Silent	SNP	G	G	A	rs151060280	byfrequency	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NCOA3	NM_181659	exon20	c.G3786A	p.Q1262Q	.	.	90	7	94	0	G|0.997;A|0.003	229
NCOA3	8202	mdanderson.org	37	20	46279827	46279827	+	Silent	SNP	G	G	A	rs6018623	byfrequency	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NCOA3	NM_181659	exon20	c.G3753A	p.Q1251Q	.	.	95	20	90	0	G|0.861;A|0.139	229
NEUROG3	50674	ucsc.edu	37	10	71332204	71332204	+	Missense_Mutation	SNP	A	A	G	rs4536103	byfrequency	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NEUROG3	NM_020999	exon2	c.T596C	p.F199S	.	.	13	5	11	1	A|0.573;G|0.427	90
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	35871997	35872005	+	In_Frame_Del	DEL	CCAAGGACA	CCAAGGACA	-	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	CCAAGGACA	CCAAGGACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NFKBIA	NM_020529	exon4	c.608_616del	p.203_206del	.	.	77	12	110	0	.	721
NLRP8	126205	hgsc.bcm.edu	37	19	56473481	56473482	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NLRP8	NM_176811	exon4	c.2091_2092del	p.697_698del	.	.	142	15	176	0	.	361
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	139428887	139428887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NXPH2	NM_007226	exon2	c.A400G	p.I134V	.	.	113	30	191	0	.	72
OGFOD3	79701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80373361	80373361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_175902	exon2	c.G217A	p.V73I	.	.	77	25	74	0	.	.
OR10Q1	219960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57995759	57995759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	OR10Q1	NM_001004471	exon1	c.A589T	p.I197F	.	.	114	42	172	0	.	70
OR5B3	441608	bcgsc.ca	37	11	58170807	58170807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	OR5B3	NM_001005469	exon1	c.T76C	p.F26L	.	.	33	4	60	0	.	68
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4968507	4968507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_032972	exon2	c.A2888G	p.D963G	.	.	46	21	59	0	.	.
PCDHB12	56124	bcgsc.ca	37	5	140590495	140590495	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PCDHB12	NM_018932	exon1	c.T2016C	p.P672P	.	.	36	5	27	0	.	93
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95222151	95222151	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PDK4	NM_002612	exon4	c.C450T	p.V150V	.	.	129	35	189	0	.	358
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8051980	8051980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PER1	NM_002616	exon8	c.A1030G	p.I344V	.	.	72	19	64	0	.	723
PGAM5	192111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133291565	133291565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PGAM5	NM_138575	exon2	c.C313T	p.H105Y	.	.	112	25	185	0	.	90
PIGM	93183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160001525	160001525	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PIGM	NM_145167	exon1	c.G5C	p.G2A	.	.	104	17	105	0	.	228
PIK3CA	5290	bcgsc.ca	37	3	178916883	178916883	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PIK3CA	NM_006218	exon2	c.T270C	p.C90C	.	.	51	4	132	1	.	27752
PIK3CB	5291	bcgsc.ca	37	3	138374290	138374290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PIK3CB	NM_006219	exon22	c.A3154G	p.S1052G	.	.	83	4	150	1	.	1311
PIWIL3	440822	bcgsc.ca	37	22	25145743	25145743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PIWIL3	NM_001008496	exon10	c.T1133C	p.V378A	.	.	132	5	218	1	.	93
PLGRKT	55848	bcgsc.ca	37	9	5431911	5431911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_018465	exon3	c.A67G	p.N23D	.	.	96	4	140	0	.	.
PLS1	5357	broad.mit.edu	37	3	142395066	142395066	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PLS1	NM_001172312	exon5	c.T432C	p.H144H	.	.	150	4	247	0	.	91
POMC	5443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	25384548	25384548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	POMC	NM_001035256	exon4	c.C206G	p.P69R	.	.	80	19	113	0	.	91
PRDM16	63976	hgsc.bcm.edu	37	1	3322119	3322120	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRDM16	NM_022114	exon8	c.1093_1094insC	p.A365fs	.	.	83	10	38	0	.	660
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186277380	186277380	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.T2529A	p.A843A	.	.	261	23	277	0	.	91
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186277383	186277383	+	Silent	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.A2532C	p.P844P	.	.	266	29	275	0	.	91
PRKAA2	5563	bcgsc.ca	37	1	57158134	57158134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRKAA2	NM_006252	exon4	c.T434C	p.V145A	.	.	109	5	157	0	.	885
PSMD12	5718	bcgsc.ca	37	17	65346402	65346402	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PSMD12	NM_002816	exon4	c.A348G	p.T116T	.	.	76	4	77	0	.	90
PSRC1	84722	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109823808	109823808	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PSRC1	NM_001032291	exon5	c.G585T	p.S195S	.	.	66	14	115	1	.	90
PTPRQ	374462	bcgsc.ca;mdanderson.org	37	12	80839305	80839305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_001145026	exon3	c.A198G	p.R66R	.	.	12	3	30	0	.	.
RAD1	5810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34914840	34914840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RAD1	NM_002853	exon2	c.T158C	p.V53A	.	.	185	116	179	1	.	227
RASD2	23551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35947948	35947948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RASD2	NM_014310	exon3	c.G670A	p.E224K	.	.	54	15	74	0	.	659
RASGRP4	115727	broad.mit.edu;bcgsc.ca	37	19	38905729	38905729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RASGRP4	NM_170604	exon9	c.A989G	p.H330R	.	.	140	6	144	1	.	660
RNF138	51444	bcgsc.ca	37	18	29693743	29693743	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RNF138	NM_001191324	exon3	c.T312C	p.S104S	.	.	145	5	232	0	.	226
RNF169	254225	bcgsc.ca	37	11	74547158	74547158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RNF169	NM_001098638	exon6	c.T1510C	p.F504L	.	.	59	4	92	1	.	69
RNF207	388591	bcgsc.ca	37	1	6278358	6278358	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RNF207	NM_207396	exon17	c.A1662G	p.A554A	.	.	61	4	89	0	.	514
RNF219	79596	bcgsc.ca	37	13	79190165	79190165	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RNF219	NM_024546	exon6	c.T1731C	p.L577L	.	.	56	4	97	0	.	135
RUFY4	285180	bcgsc.ca	37	2	218940200	218940200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RUFY4	NM_198483	exon9	c.A985G	p.T329A	.	.	113	5	159	0	.	46
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237802427	237802427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RYR2	NM_001035	exon46	c.G7041A	p.M2347I	.	.	201	93	199	0	.	158
SACS	26278	bcgsc.ca	37	13	23909912	23909912	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SACS	NM_014363	exon10	c.T8103C	p.P2701P	.	.	77	5	98	0	.	298
SAMSN1	64092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15873032	15873032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SAMSN1	NM_001256370	exon7	c.T790C	p.C264R	.	.	98	12	180	0	.	94
SCN9A	6335	bcgsc.ca	37	2	167060668	167060668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SCN9A	NM_002977	exon26	c.T4538C	p.L1513P	.	.	90	4	133	1	.	181
SEC24B	10427	broad.mit.edu	37	4	110384125	110384125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SEC24B	NM_006323	exon2	c.T202C	p.S68P	.	.	23	3	46	0	.	137
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198267752	198267752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SF3B1	NM_012433	exon13	c.T1727C	p.V576A	.	.	90	23	149	0	.	140
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70595533	70595533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SF3B3	NM_012426	exon17	c.G2134A	p.V712I	.	.	46	8	79	0	.	91
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	7327859	7327859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SFMBT2	NM_001029880	exon5	c.C494A	p.S165X	.	.	179	31	233	0	.	141
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7327860	7327860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SFMBT2	NM_001029880	exon5	c.T493A	p.S165T	.	.	179	31	233	0	.	141
SGPP2	130367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223423159	223423159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SGPP2	NM_152386	exon5	c.C742T	p.L248F	.	.	211	55	356	0	.	91
SHC1	6464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154941042	154941042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SHC1	NM_183001	exon4	c.T679G	p.F227V	.	.	146	64	156	0	.	847
SLC22A3	6581	bcgsc.ca	37	6	160819109	160819109	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC22A3	NM_021977	exon2	c.A528G	p.A176A	.	.	63	4	99	1	.	517
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu	37	8	145641255	145641255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC39A4	NM_130849	exon2	c.C413T	p.P138L	.	.	111	7	19	0	.	90
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75684996	75684996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC44A5	NM_152697	exon16	c.A1212T	p.K404N	.	.	51	20	87	0	.	95
SLITRK6	84189	bcgsc.ca	37	13	86369567	86369567	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLITRK6	NM_032229	exon2	c.A1077G	p.R359R	.	.	93	4	135	0	.	137
SMARCAD1	56916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	95198291	95198291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SMARCAD1	NM_001128429	exon16	c.G2063T	p.R688I	.	.	84	19	125	0	.	229
SPATA32	124783	ucsc.edu	37	17	43331784	43331784	+	RNA	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	.	.	.	.	.	.	103	20	139	0	.	.
SPESP1	246777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69238762	69238762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPESP1	NM_145658	exon2	c.G889C	p.E297Q	.	.	51	12	127	0	.	90
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	117	50	88	0	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	114	25	103	0	A|0.010;C|0.001;T|0.988	45
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158612680	158612680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPTA1	NM_003126	exon32	c.A4529G	p.E1510G	.	.	292	13	276	0	.	142
SRBD1	55133	broad.mit.edu;bcgsc.ca	37	2	45616467	45616467	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SRBD1	NM_018079	exon21	c.C2970T	p.D990D	.	.	98	5	159	0	.	90
SRR	63826	bcgsc.ca	37	17	2222210	2222210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SRR	NM_021947	exon4	c.A386G	p.E129G	.	.	88	5	154	0	.	90
STAG1	10274	bcgsc.ca	37	3	136078013	136078013	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	STAG1	NM_005862	exon27	c.A2913G	p.R971R	.	.	61	4	81	0	.	228
STARD13	90627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33703451	33703451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	STARD13	NM_178006	exon5	c.C1363G	p.R455G	.	.	66	20	121	0	.	94
STRN4	29888	broad.mit.edu	37	19	47223988	47223988	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	STRN4	NM_001039877	exon17	c.A2154G	p.K718K	.	.	242	6	271	0	.	90
SYNE1	23345	bcgsc.ca	37	6	152737544	152737544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SYNE1	NM_033071	exon41	c.A6049C	p.T2017P	.	.	108	26	178	12	.	607
TBC1D21	161514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74177139	74177139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TBC1D21	NM_153356	exon5	c.A385C	p.I129L	.	.	88	33	109	0	.	92
TBC1D9B	23061	broad.mit.edu	37	5	179315168	179315168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TBC1D9B	NM_198868	exon7	c.A1189G	p.T397A	.	.	195	5	221	0	.	154
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	120989400	120989400	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TECTA	NM_005422	exon6	c.C1176T	p.I392I	.	.	54	12	89	0	.	225
TGDS	23483	bcgsc.ca	37	13	95233367	95233367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TGDS	NM_014305	exon6	c.A533G	p.Q178R	.	.	49	4	76	0	.	90
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69084238	69084238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TMF1	NM_007114	exon9	c.G2180T	p.R727L	.	.	122	41	183	0	.	90
TMPO	7112	ucsc.edu	37	12	98927136	98927136	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TMPO	NM_003276	exon4	c.A1101G	p.Q367Q	.	.	39	4	83	0	.	93
TMX3	54495	bcgsc.ca	37	18	66348306	66348306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TMX3	NM_019022	exon14	c.A947G	p.N316S	.	.	57	4	80	0	.	91
TNC	3371	bcgsc.ca	37	9	117848805	117848805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TNC	NM_002160	exon3	c.A1205G	p.D402G	.	.	70	4	119	0	.	517
TNRC6B	23112	bcgsc.ca	37	22	40642055	40642055	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TNRC6B	NM_001024843	exon5	c.A150G	p.E50E	.	.	73	4	117	0	.	22
TNRC6C	57690	bcgsc.ca	37	17	76069150	76069150	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TNRC6C	NM_018996	exon8	c.C2892T	p.N964N	.	.	80	4	116	0	.	24
TRPC4	7223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38211433	38211433	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TRPC4	NM_003306	exon11	c.A2556G	p.L852L	.	.	72	26	141	0	.	159
TSTD2	158427	bcgsc.ca	37	9	100388146	100388146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TSTD2	NM_139246	exon3	c.A299G	p.H100R	.	.	91	4	122	0	.	92
TTBK2	146057	bcgsc.ca	37	15	43069429	43069429	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TTBK2	NM_173500	exon12	c.A1209G	p.E403E	.	.	50	4	73	0	.	338
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219619007	219619007	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TTLL4	NM_014640	exon20	c.T3495C	p.S1165S	.	.	136	29	190	0	.	93
TTN	7273	bcgsc.ca	37	2	179485690	179485690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TTN	NM_001267550	exon247	c.A45647G	p.D15216G	.	.	71	4	94	0	.	636
TUBGCP5	114791	bcgsc.ca	37	15	22868944	22868944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TUBGCP5	NM_052903	exon20	c.A2816G	p.D939G	.	.	80	4	150	1	.	91
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	93835640	93835640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	UBE2N	NM_003348	exon1	c.G21T	p.R7S	.	.	199	55	257	0	.	659
USP28	57646	bcgsc.ca	37	11	113675741	113675741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	USP28	NM_020886	exon20	c.T2428C	p.Y810H	.	.	79	4	157	1	.	706
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11963990	11963990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	USP47	NM_017944	exon19	c.C2218G	p.L740V	.	.	67	14	113	0	.	660
USP53	54532	bcgsc.ca	37	4	120177510	120177510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	USP53	NM_019050	exon7	c.A482G	p.E161G	.	.	99	4	150	0	.	660
VWA5A	4013	bcgsc.ca	37	11	123993760	123993760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	VWA5A	NM_014622	exon7	c.T854C	p.L285P	.	.	57	4	91	0	.	92
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	50025347	50025347	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDFY4	NM_020945	exon32	c.C5398T	p.Q1800X	.	.	63	19	83	0	.	22
WDR24	84219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	735892	735892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDR24	NM_032259	exon5	c.C1550T	p.S517L	.	.	93	30	132	0	.	91
WDR24	84219	ucsc.edu;bcgsc.ca	37	16	737415	737415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDR24	NM_032259	exon3	c.G661A	p.G221S	.	.	29	4	38	0	.	91
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38384931	38384931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_031951	exon4	c.G1295A	p.R432Q	.	.	68	16	153	0	.	.
ZBED4	9889	broad.mit.edu	37	22	50280609	50280609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZBED4	NM_014838	exon2	c.C3299T	p.P1100L	.	.	91	3	135	0	.	92
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81412172	81412172	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZBTB10	NM_023929	exon2	c.A1416G	p.P472P	.	.	77	16	68	0	.	522
ZCCHC7	84186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37302184	37302184	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZCCHC7	NM_032226	exon3	c.611-1G>A	.	.	.	38	7	75	0	.	92
ZDHHC11	79844	broad.mit.edu	37	5	840661	840661	+	Missense_Mutation	SNP	A	A	G	rs201008730		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	ZDHHC11_ENST00000424784,NS,carcinoid-endocrine_tumour,0	ZDHHC11	NM_024786	exon5	c.T733C	p.F245L	.	.	100	5	76	1	.	92
ZMYM1	79830	bcgsc.ca	37	1	35580193	35580193	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZMYM1	NM_024772	exon10	c.A2762T	p.Q921L	.	.	21	3	38	0	.	90
ZMYM5	9205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20411886	20411886	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZMYM5	NM_001039650	exon6	c.A948G	p.T316T	.	.	76	12	168	0	.	90
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97063227	97063227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF169	NM_194320	exon5	c.T1387C	p.C463R	.	.	77	17	99	0	.	92
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97063234	97063234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF169	NM_194320	exon5	c.G1394C	p.R465P	.	.	82	16	114	0	.	92
ZNF280C	55609	bcgsc.ca	37	X	129364549	129364549	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF280C	NM_017666	exon9	c.A924G	p.K308K	.	.	85	4	94	0	.	132
ZNF43	7594	bcgsc.ca	37	19	21992175	21992175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF43	NM_001256653	exon4	c.A691G	p.R231G	.	.	53	4	77	0	.	154
ZNF480	147657	bcgsc.ca	37	19	52803696	52803696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF480	NM_144684	exon2	c.A31G	p.R11G	.	.	70	4	107	0	.	153
ZNF655	79027	bcgsc.ca	37	7	99169321	99169321	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF655	NM_001085368	exon3	c.T147C	p.I49I	.	.	81	4	116	0	.	91
ZNF729	100287226	bcgsc.ca	37	19	22487539	22487539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF729	NM_001242680	exon3	c.A207T	p.K69N	.	.	72	28	130	0	.	24
ZNF812	729648	bcgsc.ca	37	19	9801367	9801367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF812	NM_001199814	exon6	c.A812G	p.H271R	.	.	67	4	108	1	.	1
ZNF814	730051	mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	111	54	115	1	.	.
ZNF814	730051	mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	95	35	108	1	.	.
ZSCAN16	80345	bcgsc.ca	37	6	28094579	28094579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZSCAN16	NM_025231	exon3	c.A406G	p.R136G	.	.	76	5	109	0	.	153
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	22162149	22162150	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	.	.	.	p.S1088*	.	.	.	.	.	.	.	
